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Network neighborhood for query Sequence : ZHX1_MOUSE

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ZHX1_MOUSE
SwissProt Accessions	P70121, Q8BQ68, Q8C6T4, Q8CJG3	Gene names	Zhx1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.
Rank Plots	Jump to hits sorted by θ Jump to hits sorted by NC score

Hits sorted by θ

ZHX1_HUMAN
θ value	0 (rank : 1)	NC score	0.986495 (rank : 2)
Query Neighborhood Hits	334	Target Neighborhood Hits	307	Shared Neighborhood Hits	267
SwissProt Accessions	Q9UKY1, Q8IWD8	Gene names	ZHX1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

ZHX1_MOUSE
θ value	0 (rank : 2)	NC score	0.999962 (rank : 1)
Query Neighborhood Hits	334	Target Neighborhood Hits	334	Shared Neighborhood Hits	334
SwissProt Accessions	P70121, Q8BQ68, Q8C6T4, Q8CJG3	Gene names	Zhx1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

ZHX2_HUMAN
θ value	2.19465e-147 (rank : 3)	NC score	0.915390 (rank : 3)
Query Neighborhood Hits	334	Target Neighborhood Hits	347	Shared Neighborhood Hits	186
SwissProt Accessions	Q9Y6X8	Gene names	ZHX2, AFR1, KIAA0854, RAF
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

ZHX2_MOUSE
θ value	3.16907e-146 (rank : 4)	NC score	0.905302 (rank : 6)
Query Neighborhood Hits	334	Target Neighborhood Hits	435	Shared Neighborhood Hits	188
SwissProt Accessions	Q8C0C0	Gene names	Zhx2, Afr1, Raf
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

ZHX3_HUMAN
θ value	2.61056e-124 (rank : 5)	NC score	0.908777 (rank : 4)
Query Neighborhood Hits	334	Target Neighborhood Hits	331	Shared Neighborhood Hits	188
SwissProt Accessions	Q9H4I2, O43145	Gene names	ZHX3, KIAA0395, TIX1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

ZHX3_MOUSE
θ value	5.82922e-116 (rank : 6)	NC score	0.906768 (rank : 5)
Query Neighborhood Hits	334	Target Neighborhood Hits	321	Shared Neighborhood Hits	183
SwissProt Accessions	Q8C0Q2, Q80U14	Gene names	Zhx3, Kiaa0395, Tix1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

HOMEZ_MOUSE
θ value	8.10077e-17 (rank : 7)	NC score	0.582713 (rank : 8)
Query Neighborhood Hits	334	Target Neighborhood Hits	61	Shared Neighborhood Hits	19
SwissProt Accessions	Q80W88	Gene names	Homez, Kiaa1443
Domain Architecture
Description	Homeobox and leucine zipper protein Homez (Homeodomain leucine zipper- containing factor).

HOMEZ_HUMAN
θ value	2.20605e-14 (rank : 8)	NC score	0.590163 (rank : 7)
Query Neighborhood Hits	334	Target Neighborhood Hits	110	Shared Neighborhood Hits	47
SwissProt Accessions	Q8IX15, Q6P049, Q86XB6, Q9P2A5	Gene names	HOMEZ, KIAA1443
Domain Architecture
Description	Homeobox and leucine zipper protein Homez (Homeodomain leucine zipper- containing factor).

ATBF1_HUMAN
θ value	3.41135e-07 (rank : 9)	NC score	0.248287 (rank : 23)
Query Neighborhood Hits	334	Target Neighborhood Hits	1547	Shared Neighborhood Hits	268
SwissProt Accessions	Q15911, O15101, Q13719	Gene names	ATBF1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

ATBF1_MOUSE
θ value	1.29631e-06 (rank : 10)	NC score	0.246453 (rank : 25)
Query Neighborhood Hits	334	Target Neighborhood Hits	1841	Shared Neighborhood Hits	277
SwissProt Accessions	Q61329	Gene names	Atbf1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

HXB2_HUMAN
θ value	0.00035302 (rank : 11)	NC score	0.186512 (rank : 179)
Query Neighborhood Hits	334	Target Neighborhood Hits	367	Shared Neighborhood Hits	197
SwissProt Accessions	P14652, P10913, P17485	Gene names	HOXB2, HOX2H
Domain Architecture
Description	Homeobox protein Hox-B2 (Hox-2H) (Hox-2.8) (K8).

PITX3_HUMAN
θ value	0.00134147 (rank : 12)	NC score	0.263829 (rank : 11)
Query Neighborhood Hits	334	Target Neighborhood Hits	366	Shared Neighborhood Hits	215
SwissProt Accessions	O75364	Gene names	PITX3, PTX3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

PITX3_MOUSE
θ value	0.00390308 (rank : 13)	NC score	0.262448 (rank : 12)
Query Neighborhood Hits	334	Target Neighborhood Hits	380	Shared Neighborhood Hits	216
SwissProt Accessions	O35160	Gene names	Pitx3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

PO2F1_HUMAN
θ value	0.00390308 (rank : 14)	NC score	0.171438 (rank : 232)
Query Neighborhood Hits	334	Target Neighborhood Hits	426	Shared Neighborhood Hits	203
SwissProt Accessions	P14859, Q5TBT7, Q6PK46, Q8NEU9, Q9BPV1	Gene names	POU2F1, OCT1, OTF1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

SIX4_MOUSE
θ value	0.00390308 (rank : 15)	NC score	0.252837 (rank : 20)
Query Neighborhood Hits	334	Target Neighborhood Hits	341	Shared Neighborhood Hits	187
SwissProt Accessions	Q61321, Q61322, Q61323	Gene names	Six4, Arec3
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4) (Skeletal muscle-specific ARE-binding protein AREC3).

ZN462_HUMAN
θ value	0.00509761 (rank : 16)	NC score	0.073002 (rank : 352)
Query Neighborhood Hits	334	Target Neighborhood Hits	740	Shared Neighborhood Hits	57
SwissProt Accessions	Q96JM2, Q8N408	Gene names	ZNF462, KIAA1803
Domain Architecture	No domain graphic available
Description	Zinc finger protein 462.

SIX4_HUMAN
θ value	0.00665767 (rank : 17)	NC score	0.256073 (rank : 19)
Query Neighborhood Hits	334	Target Neighborhood Hits	342	Shared Neighborhood Hits	190
SwissProt Accessions	Q9UIU6	Gene names	SIX4
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4).

LHX5_HUMAN
θ value	0.00869519 (rank : 18)	NC score	0.227652 (rank : 47)
Query Neighborhood Hits	334	Target Neighborhood Hits	453	Shared Neighborhood Hits	200
SwissProt Accessions	Q9H2C1	Gene names	LHX5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

HMX2_MOUSE
θ value	0.0113563 (rank : 19)	NC score	0.208873 (rank : 114)
Query Neighborhood Hits	334	Target Neighborhood Hits	354	Shared Neighborhood Hits	208
SwissProt Accessions	P43687, Q8R1Q2	Gene names	Hmx2, Nkx-5.2, Nkx5-2
Domain Architecture
Description	Homeobox protein HMX2 (Homeobox protein Nkx-5.2).

HXC13_HUMAN
θ value	0.0113563 (rank : 20)	NC score	0.222456 (rank : 68)
Query Neighborhood Hits	334	Target Neighborhood Hits	336	Shared Neighborhood Hits	204
SwissProt Accessions	P31276, Q96J32, Q9NR24, Q9NYD5	Gene names	HOXC13, HOX3G
Domain Architecture
Description	Homeobox protein Hox-C13 (Hox-3G).

HXC13_MOUSE
θ value	0.0113563 (rank : 21)	NC score	0.222425 (rank : 69)
Query Neighborhood Hits	334	Target Neighborhood Hits	337	Shared Neighborhood Hits	204
SwissProt Accessions	P50207, Q53Z78, Q920I7	Gene names	Hoxc13, Hoxc-13
Domain Architecture
Description	Homeobox protein Hox-C13.

TRPS1_HUMAN
θ value	0.0113563 (rank : 22)	NC score	0.136766 (rank : 310)
Query Neighborhood Hits	334	Target Neighborhood Hits	539	Shared Neighborhood Hits	51
SwissProt Accessions	Q9UHF7, Q9NWE1, Q9UHH6	Gene names	TRPS1
Domain Architecture
Description	Zinc finger transcription factor Trps1 (Zinc finger protein GC79) (Tricho-rhino-phalangeal syndrome type I protein).

TRPS1_MOUSE
θ value	0.0113563 (rank : 23)	NC score	0.115463 (rank : 321)
Query Neighborhood Hits	334	Target Neighborhood Hits	609	Shared Neighborhood Hits	55
SwissProt Accessions	Q925H1	Gene names	Trps1
Domain Architecture
Description	Zinc finger transcription factor Trps1.

PITX1_HUMAN
θ value	0.0193708 (rank : 24)	NC score	0.260846 (rank : 15)
Query Neighborhood Hits	334	Target Neighborhood Hits	353	Shared Neighborhood Hits	215
SwissProt Accessions	P78337, O14677, O60425, Q9BTI5	Gene names	PITX1, BFT, PTX1
Domain Architecture
Description	Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot).

PITX1_MOUSE
θ value	0.0193708 (rank : 25)	NC score	0.259625 (rank : 17)
Query Neighborhood Hits	334	Target Neighborhood Hits	362	Shared Neighborhood Hits	214
SwissProt Accessions	P70314, O54742, P70427	Gene names	Pitx1, Bft, Potx, Ptx1
Domain Architecture
Description	Pituitary homeobox 1 (Homeobox protein P-OTX) (Pituitary OTX-related factor) (Hindlimb expressed homeobox protein backfoot) (Ptx1).

PAX7_HUMAN
θ value	0.0252991 (rank : 26)	NC score	0.233255 (rank : 39)
Query Neighborhood Hits	334	Target Neighborhood Hits	456	Shared Neighborhood Hits	218
SwissProt Accessions	P23759	Gene names	PAX7, HUP1
Domain Architecture
Description	Paired box protein Pax-7 (HUP1).

PAX7_MOUSE
θ value	0.0252991 (rank : 27)	NC score	0.234953 (rank : 35)
Query Neighborhood Hits	334	Target Neighborhood Hits	422	Shared Neighborhood Hits	217
SwissProt Accessions	P47239, Q9ES16	Gene names	Pax7, Pax-7
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-7.

PITX2_HUMAN
θ value	0.0252991 (rank : 28)	NC score	0.262343 (rank : 13)
Query Neighborhood Hits	334	Target Neighborhood Hits	381	Shared Neighborhood Hits	214
SwissProt Accessions	Q99697, O60578, O60579, O60580, Q9BY17	Gene names	PITX2, ARP1, RGS, RIEG, RIEG1
Domain Architecture
Description	Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription factor) (Solurshin) (ALL1-responsive protein ARP1).

PITX2_MOUSE
θ value	0.0252991 (rank : 29)	NC score	0.262295 (rank : 14)
Query Neighborhood Hits	334	Target Neighborhood Hits	383	Shared Neighborhood Hits	214
SwissProt Accessions	P97474, O08646, O70336, P97933, Q9JLA0, Q9QXB8, Q9R1V9, Q9Z141	Gene names	Pitx2, Arp1, Brx1, Otlx2, Ptx2, Rgs
Domain Architecture
Description	Pituitary homeobox 2 (Orthodenticle-like homeobox 2) (Solurshin) (ALL1-responsive protein ARP1) (BRX1 homeoprotein) (Paired-like homeodomain transcription factor Munc 30).

ZN518_HUMAN
θ value	0.0252991 (rank : 30)	NC score	0.054563 (rank : 382)
Query Neighborhood Hits	334	Target Neighborhood Hits	780	Shared Neighborhood Hits	53
SwissProt Accessions	Q6AHZ1, O15044, Q32MP4	Gene names	ZNF518, KIAA0335
Domain Architecture	No domain graphic available
Description	Zinc finger protein 518.

DLX5_MOUSE
θ value	0.0330416 (rank : 31)	NC score	0.236304 (rank : 30)
Query Neighborhood Hits	334	Target Neighborhood Hits	434	Shared Neighborhood Hits	215
SwissProt Accessions	P70396, O54876, O54877, O54878, Q9JJ45	Gene names	Dlx5
Domain Architecture
Description	Homeobox protein DLX-5.

LHX1_HUMAN
θ value	0.0330416 (rank : 32)	NC score	0.223788 (rank : 61)
Query Neighborhood Hits	334	Target Neighborhood Hits	453	Shared Neighborhood Hits	200
SwissProt Accessions	P48742, Q3MIW0	Gene names	LHX1, LIM1
Domain Architecture
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

PAX3_HUMAN
θ value	0.0330416 (rank : 33)	NC score	0.234949 (rank : 36)
Query Neighborhood Hits	334	Target Neighborhood Hits	513	Shared Neighborhood Hits	211
SwissProt Accessions	P23760, Q16448	Gene names	PAX3, HUP2
Domain Architecture
Description	Paired box protein Pax-3 (HUP2).

PAX3_MOUSE
θ value	0.0330416 (rank : 34)	NC score	0.235022 (rank : 34)
Query Neighborhood Hits	334	Target Neighborhood Hits	478	Shared Neighborhood Hits	210
SwissProt Accessions	P24610, Q3UFQ9, Q8BRE7, Q9CXI6	Gene names	Pax3, Pax-3
Domain Architecture
Description	Paired box protein Pax-3.

ZN711_HUMAN
θ value	0.0330416 (rank : 35)	NC score	0.047677 (rank : 394)
Query Neighborhood Hits	334	Target Neighborhood Hits	751	Shared Neighborhood Hits	57
SwissProt Accessions	Q9Y462, Q6NX42, Q9Y4J6	Gene names	ZNF711, CMPX1, ZNF6
Domain Architecture
Description	Zinc finger protein 711 (Zinc finger protein 6).

ISL1_HUMAN
θ value	0.0431538 (rank : 36)	NC score	0.209592 (rank : 106)
Query Neighborhood Hits	334	Target Neighborhood Hits	421	Shared Neighborhood Hits	200
SwissProt Accessions	P61371, P20663, P47894	Gene names	ISL1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

ISL1_MOUSE
θ value	0.0431538 (rank : 37)	NC score	0.209592 (rank : 107)
Query Neighborhood Hits	334	Target Neighborhood Hits	421	Shared Neighborhood Hits	200
SwissProt Accessions	P61372, P20663, P47894, Q812D8	Gene names	Isl1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

LHX1_MOUSE
θ value	0.0431538 (rank : 38)	NC score	0.222947 (rank : 65)
Query Neighborhood Hits	334	Target Neighborhood Hits	453	Shared Neighborhood Hits	200
SwissProt Accessions	P63006, P36199	Gene names	Lhx1, Lim-1, Lim1
Domain Architecture	No domain graphic available
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

OTP_MOUSE
θ value	0.0431538 (rank : 39)	NC score	0.244198 (rank : 26)
Query Neighborhood Hits	334	Target Neighborhood Hits	387	Shared Neighborhood Hits	213
SwissProt Accessions	O09113	Gene names	Otp
Domain Architecture
Description	Homeobox protein orthopedia.

PAX4_HUMAN
θ value	0.0431538 (rank : 40)	NC score	0.229451 (rank : 46)
Query Neighborhood Hits	334	Target Neighborhood Hits	367	Shared Neighborhood Hits	214
SwissProt Accessions	O43316, O95161, Q6B0H0	Gene names	PAX4
Domain Architecture
Description	Paired box protein Pax-4.

PKNX1_MOUSE
θ value	0.0431538 (rank : 41)	NC score	0.111145 (rank : 325)
Query Neighborhood Hits	334	Target Neighborhood Hits	103	Shared Neighborhood Hits	60
SwissProt Accessions	O70477	Gene names	Pknox1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1).

PROP1_HUMAN
θ value	0.0431538 (rank : 42)	NC score	0.282363 (rank : 9)
Query Neighborhood Hits	334	Target Neighborhood Hits	354	Shared Neighborhood Hits	209
SwissProt Accessions	O75360	Gene names	PROP1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

PROP1_MOUSE
θ value	0.0431538 (rank : 43)	NC score	0.275001 (rank : 10)
Query Neighborhood Hits	334	Target Neighborhood Hits	361	Shared Neighborhood Hits	207
SwissProt Accessions	P97458	Gene names	Prop1, Prop-1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

ARID2_HUMAN
θ value	0.0563607 (rank : 44)	NC score	0.072389 (rank : 353)
Query Neighborhood Hits	334	Target Neighborhood Hits	302	Shared Neighborhood Hits	24
SwissProt Accessions	Q68CP9, Q5EB51, Q645I3, Q6ZRY5, Q7Z3I5, Q86T28, Q96SJ6, Q9HCL5	Gene names	ARID2, KIAA1557
Domain Architecture	No domain graphic available
Description	AT-rich interactive domain-containing protein 2 (ARID domain- containing protein 2) (BRG1-associated factor 200) (BAF200).

DLX2_HUMAN
θ value	0.0563607 (rank : 45)	NC score	0.225445 (rank : 54)
Query Neighborhood Hits	334	Target Neighborhood Hits	355	Shared Neighborhood Hits	214
SwissProt Accessions	Q07687	Gene names	DLX2
Domain Architecture
Description	Homeobox protein DLX-2.

IRX5_HUMAN
θ value	0.0563607 (rank : 46)	NC score	0.203196 (rank : 147)
Query Neighborhood Hits	334	Target Neighborhood Hits	362	Shared Neighborhood Hits	128
SwissProt Accessions	P78411, P78416, Q7Z2E1	Gene names	IRX5, IRX2A, IRXB2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2) (IRX-2A).

IRX5_MOUSE
θ value	0.0563607 (rank : 47)	NC score	0.201545 (rank : 152)
Query Neighborhood Hits	334	Target Neighborhood Hits	324	Shared Neighborhood Hits	127
SwissProt Accessions	Q9JKQ4, Q80WV4, Q9JLL5	Gene names	Irx5, Irxb2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2).

PAX6_HUMAN
θ value	0.0563607 (rank : 48)	NC score	0.223547 (rank : 62)
Query Neighborhood Hits	334	Target Neighborhood Hits	383	Shared Neighborhood Hits	206
SwissProt Accessions	P26367, Q6N006, Q99413	Gene names	PAX6, AN2
Domain Architecture
Description	Paired box protein Pax-6 (Oculorhombin) (Aniridia type II protein).

PAX6_MOUSE
θ value	0.0563607 (rank : 49)	NC score	0.223547 (rank : 63)
Query Neighborhood Hits	334	Target Neighborhood Hits	383	Shared Neighborhood Hits	206
SwissProt Accessions	P63015, P32117, P70601, Q62222, Q64037, Q8CEI5, Q8VDB5, Q921Q8	Gene names	Pax6, Pax-6, Sey
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-6 (Oculorhombin).

SIX5_HUMAN
θ value	0.0563607 (rank : 50)	NC score	0.230867 (rank : 42)
Query Neighborhood Hits	334	Target Neighborhood Hits	386	Shared Neighborhood Hits	180
SwissProt Accessions	Q8N196	Gene names	SIX5, DMAHP
Domain Architecture	No domain graphic available
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein).

ZFX_HUMAN
θ value	0.0563607 (rank : 51)	NC score	0.045706 (rank : 399)
Query Neighborhood Hits	334	Target Neighborhood Hits	751	Shared Neighborhood Hits	57
SwissProt Accessions	P17010, O43668, Q8WYJ8	Gene names	ZFX
Domain Architecture
Description	Zinc finger X-chromosomal protein.

ZFX_MOUSE
θ value	0.0563607 (rank : 52)	NC score	0.045635 (rank : 400)
Query Neighborhood Hits	334	Target Neighborhood Hits	748	Shared Neighborhood Hits	57
SwissProt Accessions	P17012, P17011	Gene names	Zfx
Domain Architecture
Description	Zinc finger X-chromosomal protein.

DLX5_HUMAN
θ value	0.0736092 (rank : 53)	NC score	0.233861 (rank : 38)
Query Neighborhood Hits	334	Target Neighborhood Hits	405	Shared Neighborhood Hits	215
SwissProt Accessions	P56178, Q9UPL1	Gene names	DLX5
Domain Architecture
Description	Homeobox protein DLX-5.

LHX8_MOUSE
θ value	0.0736092 (rank : 54)	NC score	0.226968 (rank : 50)
Query Neighborhood Hits	334	Target Neighborhood Hits	406	Shared Neighborhood Hits	194
SwissProt Accessions	O35652, O70163, O88707	Gene names	Lhx8, Lhx7
Domain Architecture
Description	LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3).

NKX28_HUMAN
θ value	0.0736092 (rank : 55)	NC score	0.207227 (rank : 130)
Query Neighborhood Hits	334	Target Neighborhood Hits	352	Shared Neighborhood Hits	211
SwissProt Accessions	O15522	Gene names	NKX2-8, NKX-2.8, NKX2G, NKX2H
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H).

ZFY_HUMAN
θ value	0.0736092 (rank : 56)	NC score	0.045832 (rank : 398)
Query Neighborhood Hits	334	Target Neighborhood Hits	752	Shared Neighborhood Hits	59
SwissProt Accessions	P08048, Q14021, Q15558, Q96TF3	Gene names	ZFY
Domain Architecture
Description	Zinc finger Y-chromosomal protein.

IRX2_HUMAN
θ value	0.0961366 (rank : 57)	NC score	0.208067 (rank : 120)
Query Neighborhood Hits	334	Target Neighborhood Hits	358	Shared Neighborhood Hits	132
SwissProt Accessions	Q9BZI1, Q7Z2I7	Gene names	IRX2, IRXA2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

LHX61_HUMAN
θ value	0.0961366 (rank : 58)	NC score	0.226968 (rank : 51)
Query Neighborhood Hits	334	Target Neighborhood Hits	412	Shared Neighborhood Hits	194
SwissProt Accessions	Q9UPM6, Q5T7S8, Q9NTK3, Q9UPM5	Gene names	LHX6, LHX6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1 (Lhx6).

LHX6_MOUSE
θ value	0.0961366 (rank : 59)	NC score	0.230263 (rank : 45)
Query Neighborhood Hits	334	Target Neighborhood Hits	399	Shared Neighborhood Hits	197
SwissProt Accessions	O88706	Gene names	Lhx6
Domain Architecture
Description	LIM/homeobox protein Lhx6.

MEOX1_HUMAN
θ value	0.0961366 (rank : 60)	NC score	0.208299 (rank : 118)
Query Neighborhood Hits	334	Target Neighborhood Hits	342	Shared Neighborhood Hits	199
SwissProt Accessions	P50221	Gene names	MEOX1, MOX1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

AMOT_HUMAN
θ value	0.125558 (rank : 61)	NC score	0.032157 (rank : 420)
Query Neighborhood Hits	334	Target Neighborhood Hits	712	Shared Neighborhood Hits	20
SwissProt Accessions	Q4VCS5, Q504X5, Q9HD27, Q9UPT1	Gene names	AMOT, KIAA1071
Domain Architecture	No domain graphic available
Description	Angiomotin.

BARH1_HUMAN
θ value	0.125558 (rank : 62)	NC score	0.207798 (rank : 123)
Query Neighborhood Hits	334	Target Neighborhood Hits	373	Shared Neighborhood Hits	208
SwissProt Accessions	Q9BZE3, Q9NY88	Gene names	BARHL1
Domain Architecture
Description	BarH-like 1 homeobox protein.

ZFY2_MOUSE
θ value	0.125558 (rank : 63)	NC score	0.046688 (rank : 395)
Query Neighborhood Hits	334	Target Neighborhood Hits	795	Shared Neighborhood Hits	57
SwissProt Accessions	P20662	Gene names	Zfy2, Zfy-2
Domain Architecture
Description	Zinc finger Y-chromosomal protein 2.

AFTIN_MOUSE
θ value	0.163984 (rank : 64)	NC score	0.059223 (rank : 378)
Query Neighborhood Hits	334	Target Neighborhood Hits	52	Shared Neighborhood Hits	4
SwissProt Accessions	Q80WT5, Q5SSE6, Q99KJ1	Gene names	Aftph, Afth
Domain Architecture	No domain graphic available
Description	Aftiphilin.

BORIS_HUMAN
θ value	0.163984 (rank : 65)	NC score	0.031673 (rank : 421)
Query Neighborhood Hits	334	Target Neighborhood Hits	743	Shared Neighborhood Hits	57
SwissProt Accessions	Q8NI51, Q5JUG4, Q9BZ30, Q9NQJ3	Gene names	CTCFL, BORIS
Domain Architecture	No domain graphic available
Description	Transcriptional repressor CTCFL (CCCTC-binding factor) (Brother of the regulator of imprinted sites) (Zinc finger protein CTCF-T) (CTCF paralog).

IRX6_MOUSE
θ value	0.163984 (rank : 66)	NC score	0.191682 (rank : 170)
Query Neighborhood Hits	334	Target Neighborhood Hits	256	Shared Neighborhood Hits	146
SwissProt Accessions	Q9ER75	Gene names	Irx6, Irxb3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

ZFA_MOUSE
θ value	0.163984 (rank : 67)	NC score	0.044203 (rank : 402)
Query Neighborhood Hits	334	Target Neighborhood Hits	746	Shared Neighborhood Hits	58
SwissProt Accessions	P23607	Gene names	Zfa
Domain Architecture
Description	Zinc finger autosomal protein.

ADNP_HUMAN
θ value	0.21417 (rank : 68)	NC score	0.080129 (rank : 343)
Query Neighborhood Hits	334	Target Neighborhood Hits	265	Shared Neighborhood Hits	52
SwissProt Accessions	Q9H2P0, O94881, Q9UG34	Gene names	ADNP, KIAA0784
Domain Architecture
Description	Activity-dependent neuroprotector (Activity-dependent neuroprotective protein).

BARH2_HUMAN
θ value	0.21417 (rank : 69)	NC score	0.208317 (rank : 116)
Query Neighborhood Hits	334	Target Neighborhood Hits	419	Shared Neighborhood Hits	207
SwissProt Accessions	Q9NY43, Q7Z4N7	Gene names	BARHL2
Domain Architecture
Description	BarH-like 2 homeobox protein.

DLX2_MOUSE
θ value	0.21417 (rank : 70)	NC score	0.224181 (rank : 60)
Query Neighborhood Hits	334	Target Neighborhood Hits	352	Shared Neighborhood Hits	214
SwissProt Accessions	P40764	Gene names	Dlx2, Tes-1, Tes1
Domain Architecture
Description	Homeobox protein DLX-2 (Homeobox protein TES-1).

DLX3_HUMAN
θ value	0.21417 (rank : 71)	NC score	0.230517 (rank : 43)
Query Neighborhood Hits	334	Target Neighborhood Hits	369	Shared Neighborhood Hits	215
SwissProt Accessions	O60479	Gene names	DLX3
Domain Architecture
Description	Homeobox protein DLX-3.

IRX2_MOUSE
θ value	0.21417 (rank : 72)	NC score	0.204573 (rank : 142)
Query Neighborhood Hits	334	Target Neighborhood Hits	264	Shared Neighborhood Hits	131
SwissProt Accessions	P81066, O55121, Q9ERN1	Gene names	Irx2, Irxa2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

LHX5_MOUSE
θ value	0.21417 (rank : 73)	NC score	0.220772 (rank : 75)
Query Neighborhood Hits	334	Target Neighborhood Hits	456	Shared Neighborhood Hits	200
SwissProt Accessions	P61375, P50459	Gene names	Lhx5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

LHX9_HUMAN
θ value	0.21417 (rank : 74)	NC score	0.211189 (rank : 99)
Query Neighborhood Hits	334	Target Neighborhood Hits	444	Shared Neighborhood Hits	199
SwissProt Accessions	Q9NQ69, Q5VUE3, Q9BYU6, Q9NQ70	Gene names	LHX9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

LHX9_MOUSE
θ value	0.21417 (rank : 75)	NC score	0.211176 (rank : 100)
Query Neighborhood Hits	334	Target Neighborhood Hits	445	Shared Neighborhood Hits	199
SwissProt Accessions	Q9WUH2, Q9QYQ5, Q9QYQ6, Q9QZ00, Q9WU44	Gene names	Lhx9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

PO6F2_MOUSE
θ value	0.21417 (rank : 76)	NC score	0.180788 (rank : 200)
Query Neighborhood Hits	334	Target Neighborhood Hits	639	Shared Neighborhood Hits	204
SwissProt Accessions	Q8BJI4	Gene names	Pou6f2
Domain Architecture	No domain graphic available
Description	POU domain, class 6, transcription factor 2.

SIX5_MOUSE
θ value	0.21417 (rank : 77)	NC score	0.224400 (rank : 57)
Query Neighborhood Hits	334	Target Neighborhood Hits	354	Shared Neighborhood Hits	170
SwissProt Accessions	P70178	Gene names	Six5, Dmahp
Domain Architecture
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein homolog).

SUHW1_HUMAN
θ value	0.21417 (rank : 78)	NC score	0.045924 (rank : 397)
Query Neighborhood Hits	334	Target Neighborhood Hits	648	Shared Neighborhood Hits	53
SwissProt Accessions	P59817	Gene names	SUHW1
Domain Architecture	No domain graphic available
Description	Suppressor of hairy wing homolog 1 (3'OY11.1).

HCFC1_HUMAN
θ value	0.279714 (rank : 79)	NC score	0.042940 (rank : 403)
Query Neighborhood Hits	334	Target Neighborhood Hits	331	Shared Neighborhood Hits	26
SwissProt Accessions	P51610, Q6P4G5	Gene names	HCFC1, HCF1
Domain Architecture	No domain graphic available
Description	Host cell factor (HCF) (HCF-1) (C1 factor) (VP16 accessory protein) (VCAF) (CFF) [Contains: HCF N-terminal chain 1; HCF N-terminal chain 2; HCF N-terminal chain 3; HCF N-terminal chain 4; HCF N-terminal chain 5; HCF N-terminal chain 6; HCF C-terminal chain 1; HCF C- terminal chain 2; HCF C-terminal chain 3; HCF C-terminal chain 4; HCF C-terminal chain 5; HCF C-terminal chain 6].

HXD12_HUMAN
θ value	0.279714 (rank : 80)	NC score	0.201704 (rank : 151)
Query Neighborhood Hits	334	Target Neighborhood Hits	334	Shared Neighborhood Hits	197
SwissProt Accessions	P35452, Q9NS03	Gene names	HOXD12, HOX4H
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4H).

HXD12_MOUSE
θ value	0.279714 (rank : 81)	NC score	0.197634 (rank : 162)
Query Neighborhood Hits	334	Target Neighborhood Hits	370	Shared Neighborhood Hits	199
SwissProt Accessions	P23812	Gene names	Hoxd12, Hox-4.7, Hoxd-12
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4.7) (Hox-5.6).

IRX3_HUMAN
θ value	0.279714 (rank : 82)	NC score	0.198218 (rank : 160)
Query Neighborhood Hits	334	Target Neighborhood Hits	342	Shared Neighborhood Hits	137
SwissProt Accessions	P78415, Q7Z4A4, Q7Z4A5, Q8IVC6	Gene names	IRX3, IRXB1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

IRX3_MOUSE
θ value	0.279714 (rank : 83)	NC score	0.198414 (rank : 158)
Query Neighborhood Hits	334	Target Neighborhood Hits	303	Shared Neighborhood Hits	134
SwissProt Accessions	P81067	Gene names	Irx3, Irxb1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

IRX6_HUMAN
θ value	0.279714 (rank : 84)	NC score	0.208953 (rank : 112)
Query Neighborhood Hits	334	Target Neighborhood Hits	262	Shared Neighborhood Hits	147
SwissProt Accessions	P78412, Q7Z2K0	Gene names	IRX6, IRX7, IRXB3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

LHX61_MOUSE
θ value	0.279714 (rank : 85)	NC score	0.216278 (rank : 86)
Query Neighborhood Hits	334	Target Neighborhood Hits	396	Shared Neighborhood Hits	187
SwissProt Accessions	Q9R1R0, Q9R1R1	Gene names	Lhx6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1.

PAX4_MOUSE
θ value	0.279714 (rank : 86)	NC score	0.224831 (rank : 56)
Query Neighborhood Hits	334	Target Neighborhood Hits	370	Shared Neighborhood Hits	212
SwissProt Accessions	P32115, P97341, Q9QUR1, Q9R091	Gene names	Pax4, Pax-4
Domain Architecture
Description	Paired box protein Pax-4.

PO6F2_HUMAN
θ value	0.279714 (rank : 87)	NC score	0.181229 (rank : 196)
Query Neighborhood Hits	334	Target Neighborhood Hits	618	Shared Neighborhood Hits	194
SwissProt Accessions	P78424, P78425, Q75ME8, Q86UM6, Q9UDS7	Gene names	POU6F2, RPF1
Domain Architecture
Description	POU domain, class 6, transcription factor 2 (Retina-derived POU-domain factor 1) (RPF-1).

ZFY1_MOUSE
θ value	0.279714 (rank : 88)	NC score	0.046374 (rank : 396)
Query Neighborhood Hits	334	Target Neighborhood Hits	790	Shared Neighborhood Hits	58
SwissProt Accessions	P10925	Gene names	Zfy1, Zfy-1
Domain Architecture
Description	Zinc finger Y-chromosomal protein 1.

ZN699_HUMAN
θ value	0.279714 (rank : 89)	NC score	0.025391 (rank : 431)
Query Neighborhood Hits	334	Target Neighborhood Hits	773	Shared Neighborhood Hits	54
SwissProt Accessions	Q32M78, Q8N9A1	Gene names	ZNF699
Domain Architecture	No domain graphic available
Description	Zinc finger protein 699 (Hangover homolog).

ALX4_HUMAN
θ value	0.365318 (rank : 90)	NC score	0.224300 (rank : 58)
Query Neighborhood Hits	334	Target Neighborhood Hits	394	Shared Neighborhood Hits	211
SwissProt Accessions	Q9H161, Q96JN7, Q9H198, Q9HAY9	Gene names	ALX4, KIAA1788
Domain Architecture
Description	Homeobox protein aristaless-like 4.

BARH2_MOUSE
θ value	0.365318 (rank : 91)	NC score	0.206919 (rank : 134)
Query Neighborhood Hits	334	Target Neighborhood Hits	397	Shared Neighborhood Hits	208
SwissProt Accessions	Q8VIB5, Q66L43	Gene names	Barhl2, Barh1, Mbh1
Domain Architecture	No domain graphic available
Description	BarH-like 2 homeobox protein (Bar-class homeodomain protein MBH1) (Homeobox protein B-H1).

HCFC1_MOUSE
θ value	0.365318 (rank : 92)	NC score	0.042570 (rank : 404)
Query Neighborhood Hits	334	Target Neighborhood Hits	348	Shared Neighborhood Hits	26
SwissProt Accessions	Q61191, Q684R1, Q7TSB0, Q8C2D0, Q9QWH2	Gene names	Hcfc1
Domain Architecture	No domain graphic available
Description	Host cell factor (HCF) (HCF-1) (C1 factor) [Contains: HCF N-terminal chain 1; HCF N-terminal chain 2; HCF N-terminal chain 3; HCF N- terminal chain 4; HCF N-terminal chain 5; HCF N-terminal chain 6; HCF C-terminal chain 1; HCF C-terminal chain 2; HCF C-terminal chain 3; HCF C-terminal chain 4; HCF C-terminal chain 5; HCF C-terminal chain 6].

MUC2_HUMAN
θ value	0.365318 (rank : 93)	NC score	0.047833 (rank : 393)
Query Neighborhood Hits	334	Target Neighborhood Hits	906	Shared Neighborhood Hits	46
SwissProt Accessions	Q02817, Q14878	Gene names	MUC2, SMUC
Domain Architecture
Description	Mucin-2 precursor (Intestinal mucin-2).

SIX2_MOUSE
θ value	0.365318 (rank : 94)	NC score	0.230438 (rank : 44)
Query Neighborhood Hits	334	Target Neighborhood Hits	376	Shared Neighborhood Hits	207
SwissProt Accessions	Q62232, P70179	Gene names	Six2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

SIX6_HUMAN
θ value	0.365318 (rank : 95)	NC score	0.206563 (rank : 136)
Query Neighborhood Hits	334	Target Neighborhood Hits	269	Shared Neighborhood Hits	177
SwissProt Accessions	O95475, Q9P1X8	Gene names	SIX6, OPTX2, SIX9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Homeodomain protein OPTX2).

ZN142_HUMAN
θ value	0.365318 (rank : 96)	NC score	0.042236 (rank : 405)
Query Neighborhood Hits	334	Target Neighborhood Hits	1007	Shared Neighborhood Hits	70
SwissProt Accessions	P52746, Q92510	Gene names	ZNF142, KIAA0236
Domain Architecture	No domain graphic available
Description	Zinc finger protein 142 (HA4654).

GSCL_HUMAN
θ value	0.47712 (rank : 97)	NC score	0.258237 (rank : 18)
Query Neighborhood Hits	334	Target Neighborhood Hits	343	Shared Neighborhood Hits	201
SwissProt Accessions	O15499	Gene names	GSCL
Domain Architecture
Description	Homeobox protein goosecoid-like (GSC-2).

LHX2_MOUSE
θ value	0.47712 (rank : 98)	NC score	0.213697 (rank : 92)
Query Neighborhood Hits	334	Target Neighborhood Hits	431	Shared Neighborhood Hits	197
SwissProt Accessions	Q9Z0S2	Gene names	Lhx2
Domain Architecture
Description	LIM/homeobox protein Lhx2.

MDC1_HUMAN
θ value	0.47712 (rank : 99)	NC score	0.034295 (rank : 416)
Query Neighborhood Hits	334	Target Neighborhood Hits	1446	Shared Neighborhood Hits	57
SwissProt Accessions	Q14676, Q5JP55, Q5JP56, Q5ST83, Q68CQ3, Q86Z06, Q96QC2	Gene names	MDC1, KIAA0170, NFBD1
Domain Architecture	No domain graphic available
Description	Mediator of DNA damage checkpoint protein 1 (Nuclear factor with BRCT domains 1).

RX_HUMAN
θ value	0.47712 (rank : 100)	NC score	0.227299 (rank : 48)
Query Neighborhood Hits	334	Target Neighborhood Hits	423	Shared Neighborhood Hits	208
SwissProt Accessions	Q9Y2V3	Gene names	RAX, RX
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

ZN483_HUMAN
θ value	0.47712 (rank : 101)	NC score	0.020314 (rank : 451)
Query Neighborhood Hits	334	Target Neighborhood Hits	785	Shared Neighborhood Hits	53
SwissProt Accessions	Q8TF39	Gene names	ZNF483, KIAA1962
Domain Architecture
Description	Zinc finger protein 483.

DLX1_HUMAN
θ value	0.62314 (rank : 102)	NC score	0.220478 (rank : 77)
Query Neighborhood Hits	334	Target Neighborhood Hits	343	Shared Neighborhood Hits	212
SwissProt Accessions	P56177, Q53ZU4, Q8IYB2	Gene names	DLX1
Domain Architecture
Description	Homeobox protein DLX-1.

DLX1_MOUSE
θ value	0.62314 (rank : 103)	NC score	0.220671 (rank : 76)
Query Neighborhood Hits	334	Target Neighborhood Hits	343	Shared Neighborhood Hits	212
SwissProt Accessions	Q64317	Gene names	Dlx1
Domain Architecture
Description	Homeobox protein DLX-1.

DUX1_HUMAN
θ value	0.62314 (rank : 104)	NC score	0.249383 (rank : 22)
Query Neighborhood Hits	334	Target Neighborhood Hits	330	Shared Neighborhood Hits	201
SwissProt Accessions	O43812	Gene names	DUX1
Domain Architecture	No domain graphic available
Description	Double homeobox protein 1.

DUX5_HUMAN
θ value	0.62314 (rank : 105)	NC score	0.248235 (rank : 24)
Query Neighborhood Hits	334	Target Neighborhood Hits	330	Shared Neighborhood Hits	201
SwissProt Accessions	Q96PT3	Gene names	DUX5
Domain Architecture	No domain graphic available
Description	Double homeobox protein 5.

GBX2_HUMAN
θ value	0.62314 (rank : 106)	NC score	0.186103 (rank : 182)
Query Neighborhood Hits	334	Target Neighborhood Hits	322	Shared Neighborhood Hits	184
SwissProt Accessions	P52951, O43833, Q53RX5, Q9Y5Y1	Gene names	GBX2
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2).

GBX2_MOUSE
θ value	0.62314 (rank : 107)	NC score	0.186480 (rank : 180)
Query Neighborhood Hits	334	Target Neighborhood Hits	326	Shared Neighborhood Hits	184
SwissProt Accessions	P48031	Gene names	Gbx2, Mmoxa, Stra7
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2) (Homeobox protein STRA7).

HME2_HUMAN
θ value	0.62314 (rank : 108)	NC score	0.222743 (rank : 66)
Query Neighborhood Hits	334	Target Neighborhood Hits	355	Shared Neighborhood Hits	208
SwissProt Accessions	P19622	Gene names	EN2
Domain Architecture
Description	Homeobox protein engrailed-2 (Hu-En-2).

HME2_MOUSE
θ value	0.62314 (rank : 109)	NC score	0.222560 (rank : 67)
Query Neighborhood Hits	334	Target Neighborhood Hits	352	Shared Neighborhood Hits	208
SwissProt Accessions	P09066	Gene names	En2, En-2
Domain Architecture
Description	Homeobox protein engrailed-2 (Mo-En-2).

ISL2_HUMAN
θ value	0.62314 (rank : 110)	NC score	0.208106 (rank : 119)
Query Neighborhood Hits	334	Target Neighborhood Hits	435	Shared Neighborhood Hits	202
SwissProt Accessions	Q96A47	Gene names	ISL2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

LHX3_HUMAN
θ value	0.62314 (rank : 111)	NC score	0.203479 (rank : 146)
Query Neighborhood Hits	334	Target Neighborhood Hits	474	Shared Neighborhood Hits	213
SwissProt Accessions	Q9UBR4, Q9NZB5, Q9P0I8, Q9P0I9	Gene names	LHX3
Domain Architecture
Description	LIM/homeobox protein Lhx3.

LHX4_HUMAN
θ value	0.62314 (rank : 112)	NC score	0.208300 (rank : 117)
Query Neighborhood Hits	334	Target Neighborhood Hits	455	Shared Neighborhood Hits	213
SwissProt Accessions	Q969G2, Q8NHE0, Q8TCJ1, Q8WWX2, Q969W2	Gene names	LHX4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

LHX4_MOUSE
θ value	0.62314 (rank : 113)	NC score	0.207799 (rank : 122)
Query Neighborhood Hits	334	Target Neighborhood Hits	457	Shared Neighborhood Hits	213
SwissProt Accessions	P53776, O08916, Q9R280	Gene names	Lhx4, Gsh-4, Gsh4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

MEOX1_MOUSE
θ value	0.62314 (rank : 114)	NC score	0.207643 (rank : 126)
Query Neighborhood Hits	334	Target Neighborhood Hits	345	Shared Neighborhood Hits	206
SwissProt Accessions	P32442	Gene names	Meox1, Mox-1, Mox1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

PEG3_MOUSE
θ value	0.62314 (rank : 115)	NC score	0.021683 (rank : 445)
Query Neighborhood Hits	334	Target Neighborhood Hits	1101	Shared Neighborhood Hits	52
SwissProt Accessions	Q3URU2, O54978, Q3TQ69, Q5EBP7, Q61138, Q6GQS0, Q80U47, Q8R5N0, Q9QX53	Gene names	Peg3, Kiaa0287, Pw1
Domain Architecture	No domain graphic available
Description	Paternally expressed gene 3 protein (ASF-1).

PO2F1_MOUSE
θ value	0.62314 (rank : 116)	NC score	0.139467 (rank : 307)
Query Neighborhood Hits	334	Target Neighborhood Hits	408	Shared Neighborhood Hits	188
SwissProt Accessions	P25425, Q61994, Q63891, Q6Y681, Q7TSD0, Q8BT04, Q8K570, Q99JH0, Q9WTZ4, Q9WTZ5, Q9WTZ6	Gene names	Pou2f1, Oct-1, Otf-1, Otf1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

RX_MOUSE
θ value	0.62314 (rank : 117)	NC score	0.231933 (rank : 40)
Query Neighborhood Hits	334	Target Neighborhood Hits	429	Shared Neighborhood Hits	206
SwissProt Accessions	O35602, O08748	Gene names	Rax, Rx
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

VAX2_HUMAN
θ value	0.62314 (rank : 118)	NC score	0.205818 (rank : 139)
Query Neighborhood Hits	334	Target Neighborhood Hits	337	Shared Neighborhood Hits	200
SwissProt Accessions	Q9UIW0	Gene names	VAX2
Domain Architecture
Description	Ventral anterior homeobox 2.

VAX2_MOUSE
θ value	0.62314 (rank : 119)	NC score	0.205563 (rank : 141)
Query Neighborhood Hits	334	Target Neighborhood Hits	338	Shared Neighborhood Hits	200
SwissProt Accessions	Q9WTP9	Gene names	Vax2, Vex
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 2 (Ventral retina homeodomain protein).

ZFHX2_HUMAN
θ value	0.62314 (rank : 120)	NC score	0.235513 (rank : 33)
Query Neighborhood Hits	334	Target Neighborhood Hits	1178	Shared Neighborhood Hits	250
SwissProt Accessions	Q9C0A1	Gene names	ZFHX2, KIAA1762
Domain Architecture
Description	Zinc finger homeobox protein 2.

ZN124_HUMAN
θ value	0.62314 (rank : 121)	NC score	0.021668 (rank : 446)
Query Neighborhood Hits	334	Target Neighborhood Hits	734	Shared Neighborhood Hits	49
SwissProt Accessions	Q15973, Q15974, Q4VAJ7, Q5T2V4	Gene names	ZNF124
Domain Architecture	No domain graphic available
Description	Zinc finger protein 124 (HZF-16).

BORG5_HUMAN
θ value	0.813845 (rank : 122)	NC score	0.029748 (rank : 425)
Query Neighborhood Hits	334	Target Neighborhood Hits	135	Shared Neighborhood Hits	10
SwissProt Accessions	Q00587, Q96GN1	Gene names	CDC42EP1, BORG5, CEP1, MSE55
Domain Architecture
Description	Cdc42 effector protein 1 (Binder of Rho GTPases 5) (Serum protein MSE55).

DBX1_MOUSE
θ value	0.813845 (rank : 123)	NC score	0.214221 (rank : 89)
Query Neighborhood Hits	334	Target Neighborhood Hits	346	Shared Neighborhood Hits	202
SwissProt Accessions	P52950	Gene names	Dbx1, Dbx
Domain Architecture
Description	Homeobox protein DBX1.

GSCL_MOUSE
θ value	0.813845 (rank : 124)	NC score	0.260157 (rank : 16)
Query Neighborhood Hits	334	Target Neighborhood Hits	339	Shared Neighborhood Hits	202
SwissProt Accessions	P56916	Gene names	Gscl
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid-like (GSC-2).

GSC_HUMAN
θ value	0.813845 (rank : 125)	NC score	0.241754 (rank : 28)
Query Neighborhood Hits	334	Target Neighborhood Hits	369	Shared Neighborhood Hits	213
SwissProt Accessions	P56915, Q86YR1	Gene names	GSC
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid.

GSC_MOUSE
θ value	0.813845 (rank : 126)	NC score	0.243371 (rank : 27)
Query Neighborhood Hits	334	Target Neighborhood Hits	368	Shared Neighborhood Hits	210
SwissProt Accessions	Q02591	Gene names	Gsc
Domain Architecture
Description	Homeobox protein goosecoid.

HXD3_HUMAN
θ value	0.813845 (rank : 127)	NC score	0.176816 (rank : 220)
Query Neighborhood Hits	334	Target Neighborhood Hits	433	Shared Neighborhood Hits	202
SwissProt Accessions	P31249, Q99955, Q9BSC5	Gene names	HOXD3, HOX4A
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4A).

HXD3_MOUSE
θ value	0.813845 (rank : 128)	NC score	0.180599 (rank : 204)
Query Neighborhood Hits	334	Target Neighborhood Hits	435	Shared Neighborhood Hits	205
SwissProt Accessions	P09027, Q3UUD3	Gene names	Hoxd3, Hox-4.1, Hoxd-3
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4.1) (Homeobox protein MH-19).

IRX1_HUMAN
θ value	0.813845 (rank : 129)	NC score	0.188752 (rank : 174)
Query Neighborhood Hits	334	Target Neighborhood Hits	285	Shared Neighborhood Hits	137
SwissProt Accessions	P78414, Q7Z2F8, Q8N312	Gene names	IRX1, IRXA1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

IRX1_MOUSE
θ value	0.813845 (rank : 130)	NC score	0.185782 (rank : 183)
Query Neighborhood Hits	334	Target Neighborhood Hits	269	Shared Neighborhood Hits	136
SwissProt Accessions	P81068, O55120, Q9JLL6	Gene names	Irx1, Irxa1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

MEOX2_HUMAN
θ value	0.813845 (rank : 131)	NC score	0.194204 (rank : 169)
Query Neighborhood Hits	334	Target Neighborhood Hits	340	Shared Neighborhood Hits	200
SwissProt Accessions	P50222, O75263, Q9UPL6	Gene names	MEOX2, GAX, MOX2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth arrest-specific homeobox).

MEOX2_MOUSE
θ value	0.813845 (rank : 132)	NC score	0.194400 (rank : 168)
Query Neighborhood Hits	334	Target Neighborhood Hits	341	Shared Neighborhood Hits	200
SwissProt Accessions	P32443, Q544T6	Gene names	Meox2, Gax, Mox-2, Mox2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2).

NKX22_HUMAN
θ value	0.813845 (rank : 133)	NC score	0.197972 (rank : 161)
Query Neighborhood Hits	334	Target Neighborhood Hits	342	Shared Neighborhood Hits	206
SwissProt Accessions	O95096	Gene names	NKX2-2, NKX2.2, NKX2B
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

NKX28_MOUSE
θ value	0.813845 (rank : 134)	NC score	0.206938 (rank : 133)
Query Neighborhood Hits	334	Target Neighborhood Hits	347	Shared Neighborhood Hits	210
SwissProt Accessions	O70584	Gene names	Nkx2-8, Nkx-2.9, Nkx2-9, Nkx2h
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H) (Homeobox protein Nkx-2.9).

PBX4_MOUSE
θ value	0.813845 (rank : 135)	NC score	0.177326 (rank : 217)
Query Neighborhood Hits	334	Target Neighborhood Hits	324	Shared Neighborhood Hits	192
SwissProt Accessions	Q99NE9, Q8CFL2, Q99NE8	Gene names	Pbx4
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 4 (Homeobox protein PBX4).

PO6F1_HUMAN
θ value	0.813845 (rank : 136)	NC score	0.180639 (rank : 203)
Query Neighborhood Hits	334	Target Neighborhood Hits	370	Shared Neighborhood Hits	199
SwissProt Accessions	Q14863	Gene names	POU6F1, BRN5, MPOU, TCFB1
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (mPOU homeobox protein) (Brain-specific homeobox/POU domain protein 5) (Brain-5) (Brn-5 protein).

PO6F1_MOUSE
θ value	0.813845 (rank : 137)	NC score	0.183875 (rank : 188)
Query Neighborhood Hits	334	Target Neighborhood Hits	581	Shared Neighborhood Hits	215
SwissProt Accessions	Q07916, Q91XK3	Gene names	Pou6f1, Emb
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (Octamer-binding transcription factor EMB) (Transcription regulatory protein MCP-1).

SIX1_HUMAN
θ value	0.813845 (rank : 138)	NC score	0.222017 (rank : 71)
Query Neighborhood Hits	334	Target Neighborhood Hits	343	Shared Neighborhood Hits	201
SwissProt Accessions	Q15475, Q96H64	Gene names	SIX1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

SIX1_MOUSE
θ value	0.813845 (rank : 139)	NC score	0.222027 (rank : 70)
Query Neighborhood Hits	334	Target Neighborhood Hits	341	Shared Neighborhood Hits	201
SwissProt Accessions	Q62231, Q8CIL7	Gene names	Six1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

SIX6_MOUSE
θ value	0.813845 (rank : 140)	NC score	0.202993 (rank : 148)
Query Neighborhood Hits	334	Target Neighborhood Hits	267	Shared Neighborhood Hits	177
SwissProt Accessions	Q9QZ28, O88423	Gene names	Six6, Optx2, Six9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Six9 protein).

UCHL5_MOUSE
θ value	0.813845 (rank : 141)	NC score	0.036329 (rank : 413)
Query Neighborhood Hits	334	Target Neighborhood Hits	36	Shared Neighborhood Hits	4
SwissProt Accessions	Q9WUP7, Q9CVJ4, Q9CXZ3, Q9R107	Gene names	Uchl5, Uch37
Domain Architecture
Description	Ubiquitin carboxyl-terminal hydrolase isozyme L5 (EC 3.4.19.12) (UCH- L5) (Ubiquitin thioesterase L5) (Ubiquitin C-terminal hydrolase UCH37).

VSX1_HUMAN
θ value	0.813845 (rank : 142)	NC score	0.219226 (rank : 81)
Query Neighborhood Hits	334	Target Neighborhood Hits	344	Shared Neighborhood Hits	194
SwissProt Accessions	Q9NZR4, Q5TF40, Q5TF41, Q9HCU3, Q9NU27	Gene names	VSX1, RINX
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

VSX1_MOUSE
θ value	0.813845 (rank : 143)	NC score	0.224250 (rank : 59)
Query Neighborhood Hits	334	Target Neighborhood Hits	356	Shared Neighborhood Hits	191
SwissProt Accessions	Q91V10	Gene names	Vsx1, Rinx
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

ZN236_HUMAN
θ value	0.813845 (rank : 144)	NC score	0.038214 (rank : 410)
Query Neighborhood Hits	334	Target Neighborhood Hits	844	Shared Neighborhood Hits	63
SwissProt Accessions	Q9UL36, Q9UL37	Gene names	ZNF236
Domain Architecture	No domain graphic available
Description	Zinc finger protein 236.

ARMX2_HUMAN
θ value	1.06291 (rank : 145)	NC score	0.020958 (rank : 448)
Query Neighborhood Hits	334	Target Neighborhood Hits	134	Shared Neighborhood Hits	5
SwissProt Accessions	Q7L311, O60267, Q5H9D9	Gene names	ARMCX2, ALEX2, KIAA0512
Domain Architecture	No domain graphic available
Description	Armadillo repeat-containing X-linked protein 2 (Protein ALEX2) (ARM protein lost in epithelial cancers on chromosome X 2).

BARX1_HUMAN
θ value	1.06291 (rank : 146)	NC score	0.186960 (rank : 176)
Query Neighborhood Hits	334	Target Neighborhood Hits	326	Shared Neighborhood Hits	193
SwissProt Accessions	Q9HBU1	Gene names	BARX1
Domain Architecture
Description	Homeobox protein BarH-like 1.

CDX4_MOUSE
θ value	1.06291 (rank : 147)	NC score	0.180009 (rank : 206)
Query Neighborhood Hits	334	Target Neighborhood Hits	378	Shared Neighborhood Hits	200
SwissProt Accessions	Q07424	Gene names	Cdx4, Cdx-4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

DLX6_HUMAN
θ value	1.06291 (rank : 148)	NC score	0.217038 (rank : 85)
Query Neighborhood Hits	334	Target Neighborhood Hits	341	Shared Neighborhood Hits	211
SwissProt Accessions	P56179, Q3ZAR6, Q9UPL2	Gene names	DLX6
Domain Architecture
Description	Homeobox protein DLX-6.

EP400_MOUSE
θ value	1.06291 (rank : 149)	NC score	0.016858 (rank : 464)
Query Neighborhood Hits	334	Target Neighborhood Hits	592	Shared Neighborhood Hits	24
SwissProt Accessions	Q8CHI8, Q80TC8, Q8BXI5, Q8BYW3, Q8C0P6, Q8CHI7, Q8VDF4, Q9DA54	Gene names	Ep400, Kiaa1498
Domain Architecture	No domain graphic available
Description	E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa SWI2/SNF2-related protein) (Domino homolog) (mDomino).

HXA13_HUMAN
θ value	1.06291 (rank : 150)	NC score	0.209265 (rank : 111)
Query Neighborhood Hits	334	Target Neighborhood Hits	353	Shared Neighborhood Hits	209
SwissProt Accessions	P31271, O43371	Gene names	HOXA13, HOX1J
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1J).

HXA13_MOUSE
θ value	1.06291 (rank : 151)	NC score	0.208902 (rank : 113)
Query Neighborhood Hits	334	Target Neighborhood Hits	351	Shared Neighborhood Hits	208
SwissProt Accessions	Q62424	Gene names	Hoxa13, Hox-1.10
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1.10).

LHX3_MOUSE
θ value	1.06291 (rank : 152)	NC score	0.198322 (rank : 159)
Query Neighborhood Hits	334	Target Neighborhood Hits	451	Shared Neighborhood Hits	204
SwissProt Accessions	P50481, Q61800, Q61801	Gene names	Lhx3, Lim-3, Lim3, Plim
Domain Architecture
Description	LIM/homeobox protein Lhx3 (Homeobox protein LIM-3) (Homeobox protein P-LIM) (LIM homeobox protein 3).

MUC5B_HUMAN
θ value	1.06291 (rank : 153)	NC score	0.045372 (rank : 401)
Query Neighborhood Hits	334	Target Neighborhood Hits	1020	Shared Neighborhood Hits	42
SwissProt Accessions	Q9HC84, O00447, O00573, O14985, O15494, O95291, O95451, Q14881, Q99552, Q9UE28	Gene names	MUC5B, MUC5
Domain Architecture
Description	Mucin-5B precursor (Mucin-5 subtype B, tracheobronchial) (High molecular weight salivary mucin MG1) (Sublingual gland mucin).

PBX2_HUMAN
θ value	1.06291 (rank : 154)	NC score	0.173581 (rank : 227)
Query Neighborhood Hits	334	Target Neighborhood Hits	350	Shared Neighborhood Hits	194
SwissProt Accessions	P40425	Gene names	PBX2, G17
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2) (Protein G17).

PBX2_MOUSE
θ value	1.06291 (rank : 155)	NC score	0.173775 (rank : 226)
Query Neighborhood Hits	334	Target Neighborhood Hits	341	Shared Neighborhood Hits	193
SwissProt Accessions	O35984	Gene names	Pbx2
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2).

PBX3_HUMAN
θ value	1.06291 (rank : 156)	NC score	0.161928 (rank : 261)
Query Neighborhood Hits	334	Target Neighborhood Hits	306	Shared Neighborhood Hits	182
SwissProt Accessions	P40426, Q96PF9, Q96PG0	Gene names	PBX3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX3_MOUSE
θ value	1.06291 (rank : 157)	NC score	0.161941 (rank : 260)
Query Neighborhood Hits	334	Target Neighborhood Hits	306	Shared Neighborhood Hits	182
SwissProt Accessions	O35317, Q925W2	Gene names	Pbx3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PODXL_HUMAN
θ value	1.06291 (rank : 158)	NC score	0.037538 (rank : 411)
Query Neighborhood Hits	334	Target Neighborhood Hits	191	Shared Neighborhood Hits	16
SwissProt Accessions	O00592	Gene names	PODXL, PCLP, PCLP1
Domain Architecture
Description	Podocalyxin-like protein 1 precursor.

PRD10_HUMAN
θ value	1.06291 (rank : 159)	NC score	0.030485 (rank : 423)
Query Neighborhood Hits	334	Target Neighborhood Hits	769	Shared Neighborhood Hits	56
SwissProt Accessions	Q9NQV6, Q9ULI9	Gene names	PRDM10, KIAA1231, PFM7
Domain Architecture	No domain graphic available
Description	PR domain zinc finger protein 10 (PR domain-containing protein 10).

VAX1_HUMAN
θ value	1.06291 (rank : 160)	NC score	0.207793 (rank : 124)
Query Neighborhood Hits	334	Target Neighborhood Hits	355	Shared Neighborhood Hits	203
SwissProt Accessions	Q5SQQ9, Q6ZSX0	Gene names	VAX1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

VAX1_MOUSE
θ value	1.06291 (rank : 161)	NC score	0.207687 (rank : 125)
Query Neighborhood Hits	334	Target Neighborhood Hits	351	Shared Neighborhood Hits	203
SwissProt Accessions	Q2NKI2, O88880	Gene names	Vax1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

ZN141_HUMAN
θ value	1.06291 (rank : 162)	NC score	0.022121 (rank : 442)
Query Neighborhood Hits	334	Target Neighborhood Hits	767	Shared Neighborhood Hits	55
SwissProt Accessions	Q15928, Q6DK07	Gene names	ZNF141
Domain Architecture
Description	Zinc finger protein 141.

ZN295_HUMAN
θ value	1.06291 (rank : 163)	NC score	0.031506 (rank : 422)
Query Neighborhood Hits	334	Target Neighborhood Hits	847	Shared Neighborhood Hits	54
SwissProt Accessions	Q9ULJ3, Q6P4R0	Gene names	ZNF295, KIAA1227, ZBTB21
Domain Architecture
Description	Zinc finger protein 295 (Zinc finger and BTB domain-containing protein 21).

ZN546_HUMAN
θ value	1.06291 (rank : 164)	NC score	0.021921 (rank : 444)
Query Neighborhood Hits	334	Target Neighborhood Hits	772	Shared Neighborhood Hits	53
SwissProt Accessions	Q86UE3	Gene names	ZNF546, ZNF49
Domain Architecture	No domain graphic available
Description	Zinc finger protein 546.

BARH1_MOUSE
θ value	1.38821 (rank : 165)	NC score	0.199117 (rank : 156)
Query Neighborhood Hits	334	Target Neighborhood Hits	350	Shared Neighborhood Hits	207
SwissProt Accessions	P63157, Q9JK26	Gene names	Barhl1, Bhx1, Mbh2
Domain Architecture	No domain graphic available
Description	BarH-like 1 homeobox protein (Bar-class homeodomain protein MBH2) (BarH-related homeobox protein 1).

CUTL1_MOUSE
θ value	1.38821 (rank : 166)	NC score	0.087087 (rank : 340)
Query Neighborhood Hits	334	Target Neighborhood Hits	1620	Shared Neighborhood Hits	184
SwissProt Accessions	P53564, O08994, P70301, Q571L6, Q91ZD2	Gene names	Cutl1, Cux, Cux1, Kiaa4047
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP) (Homeobox protein Cux).

DLX4_HUMAN
θ value	1.38821 (rank : 167)	NC score	0.236068 (rank : 31)
Query Neighborhood Hits	334	Target Neighborhood Hits	350	Shared Neighborhood Hits	209
SwissProt Accessions	Q92988, O60480, Q13265, Q6PJK0, Q9HBE0	Gene names	DLX4, BP1, DLX7, DLX8
Domain Architecture	No domain graphic available
Description	Homeobox protein DLX-4 (DLX-7) (DLX-8) (Beta protein 1).

GMEB2_MOUSE
θ value	1.38821 (rank : 168)	NC score	0.018612 (rank : 457)
Query Neighborhood Hits	334	Target Neighborhood Hits	64	Shared Neighborhood Hits	2
SwissProt Accessions	P58929, Q6PCY0	Gene names	Gmeb2
Domain Architecture	No domain graphic available
Description	Glucocorticoid modulatory element-binding protein 2 (GMEB-2).

HME1_MOUSE
θ value	1.38821 (rank : 169)	NC score	0.214547 (rank : 87)
Query Neighborhood Hits	334	Target Neighborhood Hits	397	Shared Neighborhood Hits	204
SwissProt Accessions	P09065	Gene names	En1, En-1
Domain Architecture
Description	Homeobox protein engrailed-1 (Mo-En-1).

MBD6_HUMAN
θ value	1.38821 (rank : 170)	NC score	0.032672 (rank : 419)
Query Neighborhood Hits	334	Target Neighborhood Hits	349	Shared Neighborhood Hits	18
SwissProt Accessions	Q96DN6, Q8N3M0, Q8NA81, Q96Q00	Gene names	MBD6, KIAA1887
Domain Architecture	No domain graphic available
Description	Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding protein MBD6).

NKX25_HUMAN
θ value	1.38821 (rank : 171)	NC score	0.209561 (rank : 108)
Query Neighborhood Hits	334	Target Neighborhood Hits	338	Shared Neighborhood Hits	209
SwissProt Accessions	P52952	Gene names	NKX2-5, CSX, NKX2.5, NKX2E
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

PBX1_HUMAN
θ value	1.38821 (rank : 172)	NC score	0.164367 (rank : 253)
Query Neighborhood Hits	334	Target Neighborhood Hits	317	Shared Neighborhood Hits	190
SwissProt Accessions	P40424	Gene names	PBX1, PRL
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1) (Homeobox protein PRL).

PBX1_MOUSE
θ value	1.38821 (rank : 173)	NC score	0.164367 (rank : 254)
Query Neighborhood Hits	334	Target Neighborhood Hits	317	Shared Neighborhood Hits	190
SwissProt Accessions	P41778	Gene names	Pbx1, Pbx-1
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1).

PEPP2_HUMAN
θ value	1.38821 (rank : 174)	NC score	0.207383 (rank : 129)
Query Neighborhood Hits	334	Target Neighborhood Hits	316	Shared Neighborhood Hits	188
SwissProt Accessions	Q9BQY4, Q9BR00	Gene names	PEPP2, THG1
Domain Architecture
Description	Paired-like homeobox protein PEPP-2 (Testis homeobox gene 1).

PRRXL_MOUSE
θ value	1.38821 (rank : 175)	NC score	0.234939 (rank : 37)
Query Neighborhood Hits	334	Target Neighborhood Hits	350	Shared Neighborhood Hits	209
SwissProt Accessions	Q8BYH0, Q8K3F8	Gene names	Prrxl1, Drg11
Domain Architecture	No domain graphic available
Description	Paired-related homeobox protein-like 1 (Dorsal root ganglion 11) (Homeobox protein DRG11).

SIX3_HUMAN
θ value	1.38821 (rank : 176)	NC score	0.204147 (rank : 143)
Query Neighborhood Hits	334	Target Neighborhood Hits	285	Shared Neighborhood Hits	185
SwissProt Accessions	O95343	Gene names	SIX3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX3_MOUSE
θ value	1.38821 (rank : 177)	NC score	0.204115 (rank : 144)
Query Neighborhood Hits	334	Target Neighborhood Hits	289	Shared Neighborhood Hits	185
SwissProt Accessions	Q62233, P70176, P70177	Gene names	Six3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

UCHL5_HUMAN
θ value	1.38821 (rank : 178)	NC score	0.029986 (rank : 424)
Query Neighborhood Hits	334	Target Neighborhood Hits	35	Shared Neighborhood Hits	3
SwissProt Accessions	Q9Y5K5, Q5LJA6, Q5LJA7, Q8TBS4, Q96BJ9, Q9H1W5, Q9P0I3, Q9UQN2	Gene names	UCHL5, UCH37
Domain Architecture
Description	Ubiquitin carboxyl-terminal hydrolase isozyme L5 (EC 3.4.19.12) (UCH- L5) (Ubiquitin thioesterase L5) (Ubiquitin C-terminal hydrolase UCH37).

ARX_HUMAN
θ value	1.81305 (rank : 179)	NC score	0.211890 (rank : 97)
Query Neighborhood Hits	334	Target Neighborhood Hits	401	Shared Neighborhood Hits	201
SwissProt Accessions	Q96QS3	Gene names	ARX
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

ARX_MOUSE
θ value	1.81305 (rank : 180)	NC score	0.211388 (rank : 98)
Query Neighborhood Hits	334	Target Neighborhood Hits	398	Shared Neighborhood Hits	199
SwissProt Accessions	O35085, Q9QYT4	Gene names	Arx
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

BPAEA_HUMAN
θ value	1.81305 (rank : 181)	NC score	0.005493 (rank : 484)
Query Neighborhood Hits	334	Target Neighborhood Hits	1369	Shared Neighborhood Hits	20
SwissProt Accessions	O94833, Q5TBT0, Q8N1T8, Q8N8J3, Q8WXK9, Q96AK9, Q96DQ5, Q9H555	Gene names	DST, BPAG1, DMH, DT, KIAA0728
Domain Architecture
Description	Bullous pemphigoid antigen 1, isoforms 6/9/10 (Trabeculin-beta) (Bullous pemphigoid antigen) (BPA) (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin).

CBP_MOUSE
θ value	1.81305 (rank : 182)	NC score	0.025924 (rank : 429)
Query Neighborhood Hits	334	Target Neighborhood Hits	1051	Shared Neighborhood Hits	46
SwissProt Accessions	P45481	Gene names	Crebbp, Cbp
Domain Architecture
Description	CREB-binding protein (EC 2.3.1.48).

CUTL1_HUMAN
θ value	1.81305 (rank : 183)	NC score	0.082489 (rank : 341)
Query Neighborhood Hits	334	Target Neighborhood Hits	1574	Shared Neighborhood Hits	166
SwissProt Accessions	P39880, Q6NYH4, Q9UEV5	Gene names	CUTL1
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP).

HME1_HUMAN
θ value	1.81305 (rank : 184)	NC score	0.214487 (rank : 88)
Query Neighborhood Hits	334	Target Neighborhood Hits	384	Shared Neighborhood Hits	204
SwissProt Accessions	Q05925	Gene names	EN1
Domain Architecture
Description	Homeobox protein engrailed-1 (Hu-En-1).

HXB13_HUMAN
θ value	1.81305 (rank : 185)	NC score	0.207499 (rank : 128)
Query Neighborhood Hits	334	Target Neighborhood Hits	377	Shared Neighborhood Hits	209
SwissProt Accessions	Q92826, Q96QM4, Q99810	Gene names	HOXB13
Domain Architecture
Description	Homeobox protein Hox-B13.

HXC4_MOUSE
θ value	1.81305 (rank : 186)	NC score	0.164215 (rank : 255)
Query Neighborhood Hits	334	Target Neighborhood Hits	365	Shared Neighborhood Hits	202
SwissProt Accessions	Q08624	Gene names	Hoxc4, Hox-3.5, Hoxc-4
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3.5).

HXD11_HUMAN
θ value	1.81305 (rank : 187)	NC score	0.171770 (rank : 231)
Query Neighborhood Hits	334	Target Neighborhood Hits	353	Shared Neighborhood Hits	201
SwissProt Accessions	P31277, Q9NS02	Gene names	HOXD11, HOX4F
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4F).

HXD11_MOUSE
θ value	1.81305 (rank : 188)	NC score	0.171127 (rank : 235)
Query Neighborhood Hits	334	Target Neighborhood Hits	376	Shared Neighborhood Hits	201
SwissProt Accessions	P23813	Gene names	Hoxd11, Hox-4.6, Hoxd-11
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5).

IRX4_HUMAN
θ value	1.81305 (rank : 189)	NC score	0.180171 (rank : 205)
Query Neighborhood Hits	334	Target Neighborhood Hits	276	Shared Neighborhood Hits	162
SwissProt Accessions	P78413, Q9UHR2	Gene names	IRX4, IRXA3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

IRX4_MOUSE
θ value	1.81305 (rank : 190)	NC score	0.182039 (rank : 194)
Query Neighborhood Hits	334	Target Neighborhood Hits	286	Shared Neighborhood Hits	160
SwissProt Accessions	Q9QY61	Gene names	Irx4, Irxa3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

ISL2_MOUSE
θ value	1.81305 (rank : 191)	NC score	0.206239 (rank : 138)
Query Neighborhood Hits	334	Target Neighborhood Hits	426	Shared Neighborhood Hits	199
SwissProt Accessions	Q9CXV0	Gene names	Isl2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

LHX2_HUMAN
θ value	1.81305 (rank : 192)	NC score	0.213375 (rank : 94)
Query Neighborhood Hits	334	Target Neighborhood Hits	432	Shared Neighborhood Hits	197
SwissProt Accessions	P50458, O95860, Q8N1Z3	Gene names	LHX2, LH2
Domain Architecture
Description	LIM/homeobox protein Lhx2 (Homeobox protein LH-2).

NKX12_MOUSE
θ value	1.81305 (rank : 193)	NC score	0.197421 (rank : 164)
Query Neighborhood Hits	334	Target Neighborhood Hits	332	Shared Neighborhood Hits	199
SwissProt Accessions	P42580, Q9JHF2, Q9JKW5, Q9JKW6, Q9JKW9, Q9JKX0, Q9JKX1	Gene names	Nkx1-2, Nkx1.1, Sax1
Domain Architecture
Description	NK1 transcription factor-related protein 2 (Homeobox protein SAX-1) (NKX-1.1).

PKNX1_HUMAN
θ value	1.81305 (rank : 194)	NC score	0.099813 (rank : 337)
Query Neighborhood Hits	334	Target Neighborhood Hits	101	Shared Neighborhood Hits	58
SwissProt Accessions	P55347, O00528, Q8IWT7	Gene names	PKNOX1, PREP1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1) (Homeobox protein PREP-1).

PRRX2_MOUSE
θ value	1.81305 (rank : 195)	NC score	0.221045 (rank : 74)
Query Neighborhood Hits	334	Target Neighborhood Hits	351	Shared Neighborhood Hits	205
SwissProt Accessions	Q06348, Q61651	Gene names	Prrx2, Prx2, S8
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Homeobox protein S8).

SIX2_HUMAN
θ value	1.81305 (rank : 196)	NC score	0.224894 (rank : 55)
Query Neighborhood Hits	334	Target Neighborhood Hits	345	Shared Neighborhood Hits	198
SwissProt Accessions	Q9NPC8, Q9BXH7	Gene names	SIX2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

ZAN_MOUSE
θ value	1.81305 (rank : 197)	NC score	0.016574 (rank : 465)
Query Neighborhood Hits	334	Target Neighborhood Hits	808	Shared Neighborhood Hits	16
SwissProt Accessions	O88799, O08647	Gene names	Zan
Domain Architecture
Description	Zonadhesin precursor.

ZN638_HUMAN
θ value	1.81305 (rank : 198)	NC score	0.033507 (rank : 418)
Query Neighborhood Hits	334	Target Neighborhood Hits	343	Shared Neighborhood Hits	15
SwissProt Accessions	Q14966, Q53R34, Q5XJ05, Q68DP3, Q6P2H2, Q7Z3T7, Q8NF92, Q8TCA1, Q9H2G1, Q9NP37	Gene names	ZNF638, NP220, ZFML
Domain Architecture	No domain graphic available
Description	Zinc finger protein 638 (Nuclear protein 220) (Zinc-finger matrin-like protein) (Cutaneous T-cell lymphoma-associated antigen se33-1) (CTCL tumor antigen se33-1).

DLX3_MOUSE
θ value	2.36792 (rank : 199)	NC score	0.223127 (rank : 64)
Query Neighborhood Hits	334	Target Neighborhood Hits	367	Shared Neighborhood Hits	214
SwissProt Accessions	Q64205	Gene names	Dlx3
Domain Architecture
Description	Homeobox protein DLX-3.

DLX4_MOUSE
θ value	2.36792 (rank : 200)	NC score	0.219872 (rank : 79)
Query Neighborhood Hits	334	Target Neighborhood Hits	352	Shared Neighborhood Hits	208
SwissProt Accessions	P70436, Q3UM51, Q8R4I3	Gene names	Dlx4, Dlx7
Domain Architecture
Description	Homeobox protein DLX-4 (DLX-7).

DUX3_HUMAN
θ value	2.36792 (rank : 201)	NC score	0.235681 (rank : 32)
Query Neighborhood Hits	334	Target Neighborhood Hits	312	Shared Neighborhood Hits	195
SwissProt Accessions	Q96PT4, Q9UND2	Gene names	DUX3
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 3.

GMIP_MOUSE
θ value	2.36792 (rank : 202)	NC score	0.008491 (rank : 479)
Query Neighborhood Hits	334	Target Neighborhood Hits	202	Shared Neighborhood Hits	3
SwissProt Accessions	Q6PGG2, Q6P9S3	Gene names	Gmip
Domain Architecture	No domain graphic available
Description	GEM-interacting protein (GMIP).

HMX3_MOUSE
θ value	2.36792 (rank : 203)	NC score	0.197541 (rank : 163)
Query Neighborhood Hits	334	Target Neighborhood Hits	342	Shared Neighborhood Hits	206
SwissProt Accessions	P42581	Gene names	Hmx3, Nkx-5.1, Nkx5-1
Domain Architecture
Description	Homeobox protein HMX3 (Homeobox protein Nkx-5.1).

HXB13_MOUSE
θ value	2.36792 (rank : 204)	NC score	0.206372 (rank : 137)
Query Neighborhood Hits	334	Target Neighborhood Hits	384	Shared Neighborhood Hits	205
SwissProt Accessions	P70321, Q80Y12	Gene names	Hoxb13
Domain Architecture
Description	Homeobox protein Hox-B13.

NKX25_MOUSE
θ value	2.36792 (rank : 205)	NC score	0.207921 (rank : 121)
Query Neighborhood Hits	334	Target Neighborhood Hits	347	Shared Neighborhood Hits	209
SwissProt Accessions	P42582, P97335	Gene names	Nkx2-5, Csx, Nkx-2.5, Nkx2e
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

SYP2L_HUMAN
θ value	2.36792 (rank : 206)	NC score	0.020022 (rank : 452)
Query Neighborhood Hits	334	Target Neighborhood Hits	400	Shared Neighborhood Hits	19
SwissProt Accessions	Q9H987	Gene names	SYNPO2L
Domain Architecture	No domain graphic available
Description	Synaptopodin 2-like protein.

ZMYM3_MOUSE
θ value	2.36792 (rank : 207)	NC score	0.027838 (rank : 427)
Query Neighborhood Hits	334	Target Neighborhood Hits	177	Shared Neighborhood Hits	13
SwissProt Accessions	Q9JLM4, Q80U17	Gene names	Zmym3, Kiaa0385, Zfp261, Znf261
Domain Architecture	No domain graphic available
Description	Zinc finger MYM-type protein 3 (Zinc finger protein 261) (DXHXS6673E protein).

ZN706_HUMAN
θ value	2.36792 (rank : 208)	NC score	0.066422 (rank : 368)
Query Neighborhood Hits	334	Target Neighborhood Hits	9	Shared Neighborhood Hits	5
SwissProt Accessions	Q9Y5V0	Gene names	ZNF706
Domain Architecture	No domain graphic available
Description	Zinc finger protein 706.

ZN706_MOUSE
θ value	2.36792 (rank : 209)	NC score	0.066422 (rank : 369)
Query Neighborhood Hits	334	Target Neighborhood Hits	9	Shared Neighborhood Hits	5
SwissProt Accessions	Q9D115	Gene names	Znf706, Zfp706
Domain Architecture	No domain graphic available
Description	Zinc finger protein 706.

ALX4_MOUSE
θ value	3.0926 (rank : 210)	NC score	0.220030 (rank : 78)
Query Neighborhood Hits	334	Target Neighborhood Hits	369	Shared Neighborhood Hits	213
SwissProt Accessions	O35137	Gene names	Alx4
Domain Architecture
Description	Homeobox protein aristaless-like 4 (ALX-4).

BARX1_MOUSE
θ value	3.0926 (rank : 211)	NC score	0.184697 (rank : 186)
Query Neighborhood Hits	334	Target Neighborhood Hits	324	Shared Neighborhood Hits	194
SwissProt Accessions	Q9ER42, O09066, P70159, Q9ERV2	Gene names	Barx1
Domain Architecture
Description	Homeobox protein BarH-like 1.

BARX2_HUMAN
θ value	3.0926 (rank : 212)	NC score	0.195964 (rank : 165)
Query Neighborhood Hits	334	Target Neighborhood Hits	387	Shared Neighborhood Hits	201
SwissProt Accessions	Q9UMQ3, O43518	Gene names	BARX2
Domain Architecture
Description	Homeobox protein BarH-like 2.

CBP_HUMAN
θ value	3.0926 (rank : 213)	NC score	0.035808 (rank : 414)
Query Neighborhood Hits	334	Target Neighborhood Hits	941	Shared Neighborhood Hits	41
SwissProt Accessions	Q92793, O00147, Q16376	Gene names	CREBBP, CBP
Domain Architecture
Description	CREB-binding protein (EC 2.3.1.48).

CN104_HUMAN
θ value	3.0926 (rank : 214)	NC score	0.020427 (rank : 449)
Query Neighborhood Hits	334	Target Neighborhood Hits	30	Shared Neighborhood Hits	2
SwissProt Accessions	Q9NVR5, Q86TY8, Q969Z5	Gene names	C14orf104
Domain Architecture	No domain graphic available
Description	Uncharacterized protein C14orf104.

EMX2_HUMAN
θ value	3.0926 (rank : 215)	NC score	0.209397 (rank : 110)
Query Neighborhood Hits	334	Target Neighborhood Hits	341	Shared Neighborhood Hits	211
SwissProt Accessions	Q04743, Q96NN8, Q9BQF4	Gene names	EMX2
Domain Architecture
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

EMX2_MOUSE
θ value	3.0926 (rank : 216)	NC score	0.209660 (rank : 105)
Query Neighborhood Hits	334	Target Neighborhood Hits	340	Shared Neighborhood Hits	212
SwissProt Accessions	Q04744, Q80UE7	Gene names	Emx2, Emx-2
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

EPN2_HUMAN
θ value	3.0926 (rank : 217)	NC score	0.016043 (rank : 466)
Query Neighborhood Hits	334	Target Neighborhood Hits	156	Shared Neighborhood Hits	12
SwissProt Accessions	O95208, O95207, Q9H7Z2, Q9UPT7	Gene names	EPN2, KIAA1065
Domain Architecture
Description	Epsin-2 (EPS-15-interacting protein 2).

GLUD1_MOUSE
θ value	3.0926 (rank : 218)	NC score	0.018299 (rank : 458)
Query Neighborhood Hits	334	Target Neighborhood Hits	23	Shared Neighborhood Hits	3
SwissProt Accessions	Q8CIX8	Gene names	Gluld1, Lgs
Domain Architecture	No domain graphic available
Description	Glutamate--ammonia ligase domain-containing protein 1 (Lengsin) (Lens glutamine synthase-like).

HXA3_HUMAN
θ value	3.0926 (rank : 219)	NC score	0.171360 (rank : 234)
Query Neighborhood Hits	334	Target Neighborhood Hits	535	Shared Neighborhood Hits	214
SwissProt Accessions	O43365	Gene names	HOXA3, HOX1E
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1E).

HXA3_MOUSE
θ value	3.0926 (rank : 220)	NC score	0.172813 (rank : 228)
Query Neighborhood Hits	334	Target Neighborhood Hits	558	Shared Neighborhood Hits	214
SwissProt Accessions	P02831, Q4V9Z8, Q61197	Gene names	Hoxa3, Hox-1.5, Hoxa-3
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1.5) (MO-10).

HXC4_HUMAN
θ value	3.0926 (rank : 221)	NC score	0.161219 (rank : 262)
Query Neighborhood Hits	334	Target Neighborhood Hits	361	Shared Neighborhood Hits	202
SwissProt Accessions	P09017	Gene names	HOXC4, HOX3E
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3E) (CP19).

HXD13_HUMAN
θ value	3.0926 (rank : 222)	NC score	0.200174 (rank : 153)
Query Neighborhood Hits	334	Target Neighborhood Hits	332	Shared Neighborhood Hits	203
SwissProt Accessions	P35453	Gene names	HOXD13, HOX4I
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4I).

HXD13_MOUSE
θ value	3.0926 (rank : 223)	NC score	0.199977 (rank : 154)
Query Neighborhood Hits	334	Target Neighborhood Hits	324	Shared Neighborhood Hits	202
SwissProt Accessions	P70217, Q2VPB0, Q2VPB1, Q64177	Gene names	Hoxd13, Hox-4.8
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4.8).

K0460_MOUSE
θ value	3.0926 (rank : 224)	NC score	0.022779 (rank : 437)
Query Neighborhood Hits	334	Target Neighborhood Hits	374	Shared Neighborhood Hits	20
SwissProt Accessions	Q6NXI6, Q3U3L8, Q6ZQA7	Gene names	Kiaa0460
Domain Architecture	No domain graphic available
Description	Protein KIAA0460.

PO5F1_MOUSE
θ value	3.0926 (rank : 225)	NC score	0.100654 (rank : 335)
Query Neighborhood Hits	334	Target Neighborhood Hits	305	Shared Neighborhood Hits	165
SwissProt Accessions	P20263, Q63843	Gene names	Pou5f1, Oct-3, Oct-4, Otf-3, Otf3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4) (NF-A3).

SHOX2_HUMAN
θ value	3.0926 (rank : 226)	NC score	0.227208 (rank : 49)
Query Neighborhood Hits	334	Target Neighborhood Hits	353	Shared Neighborhood Hits	198
SwissProt Accessions	O60902, O60465, O60467, O60903	Gene names	SHOX2, OG12X, SHOT
Domain Architecture
Description	Short stature homeobox protein 2 (Paired-related homeobox protein SHOT) (Homeobox protein Og12X).

ZN451_HUMAN
θ value	3.0926 (rank : 227)	NC score	0.042062 (rank : 406)
Query Neighborhood Hits	334	Target Neighborhood Hits	627	Shared Neighborhood Hits	48
SwissProt Accessions	Q9Y4E5, Q5VVF1, Q8N380, Q8TD15, Q9NQM1	Gene names	ZNF451, COASTER, KIAA0576
Domain Architecture	No domain graphic available
Description	Zinc finger protein 451 (Coactivator for steroid receptors).

ZNF43_HUMAN
θ value	3.0926 (rank : 228)	NC score	0.023687 (rank : 436)
Query Neighborhood Hits	334	Target Neighborhood Hits	779	Shared Neighborhood Hits	57
SwissProt Accessions	P17038, P28160, Q96DG1	Gene names	ZNF43, KOX27, ZNF39
Domain Architecture
Description	Zinc finger protein 43 (Zinc protein HTF6) (Zinc finger protein KOX27).

BARX2_MOUSE
θ value	4.03905 (rank : 229)	NC score	0.195733 (rank : 166)
Query Neighborhood Hits	334	Target Neighborhood Hits	335	Shared Neighborhood Hits	199
SwissProt Accessions	O08686	Gene names	Barx2
Domain Architecture
Description	Homeobox protein BarH-like 2.

CART1_HUMAN
θ value	4.03905 (rank : 230)	NC score	0.209992 (rank : 104)
Query Neighborhood Hits	334	Target Neighborhood Hits	348	Shared Neighborhood Hits	207
SwissProt Accessions	Q15699, Q546C8, Q96FH4	Gene names	CART1
Domain Architecture
Description	Cartilage homeoprotein 1 (CART-1).

E41L3_HUMAN
θ value	4.03905 (rank : 231)	NC score	0.009764 (rank : 476)
Query Neighborhood Hits	334	Target Neighborhood Hits	113	Shared Neighborhood Hits	7
SwissProt Accessions	Q9Y2J2, O95713, Q9BRP5	Gene names	EPB41L3, DAL1, KIAA0987
Domain Architecture
Description	Band 4.1-like protein 3 (4.1B) (Differentially expressed in adenocarcinoma of the lung protein 1) (DAL-1).

E41L3_MOUSE
θ value	4.03905 (rank : 232)	NC score	0.008917 (rank : 477)
Query Neighborhood Hits	334	Target Neighborhood Hits	250	Shared Neighborhood Hits	7
SwissProt Accessions	Q9WV92, Q9R102	Gene names	Epb41l3, Dal1, Epb4.1l3
Domain Architecture
Description	Band 4.1-like protein 3 (4.1B) (Differentially expressed in adenocarcinoma of the lung protein 1) (DAL-1) (DAL1P) (mDAL-1).

FOXM1_HUMAN
θ value	4.03905 (rank : 233)	NC score	0.006504 (rank : 483)
Query Neighborhood Hits	334	Target Neighborhood Hits	167	Shared Neighborhood Hits	9
SwissProt Accessions	Q08050, O43258, O43259, O43260, Q4ZGG7, Q9BRL2	Gene names	FOXM1, FKHL16, HFH11, MPP2, WIN
Domain Architecture
Description	Forkhead box protein M1 (Forkhead-related protein FKHL16) (Hepatocyte nuclear factor 3 forkhead homolog 11) (HNF-3/fork-head homolog 11) (HFH-11) (Winged helix factor from INS-1 cells) (M-phase phosphoprotein 2) (MPM-2 reactive phosphoprotein 2) (Transcription factor Trident).

GP1BA_HUMAN
θ value	4.03905 (rank : 234)	NC score	0.003386 (rank : 489)
Query Neighborhood Hits	334	Target Neighborhood Hits	407	Shared Neighborhood Hits	9
SwissProt Accessions	P07359, Q14441, Q16469, Q8N1F3, Q8NG39, Q9HDC7, Q9UEK1, Q9UQS4	Gene names	GP1BA
Domain Architecture
Description	Platelet glycoprotein Ib alpha chain precursor (Glycoprotein Ibalpha) (GP-Ib alpha) (GPIbA) (GPIb-alpha) (Antigen CD42b-alpha) (CD42b antigen) [Contains: Glycocalicin].

JHD2C_MOUSE
θ value	4.03905 (rank : 235)	NC score	0.010464 (rank : 474)
Query Neighborhood Hits	334	Target Neighborhood Hits	297	Shared Neighborhood Hits	11
SwissProt Accessions	Q69ZK6, Q6NV48, Q8BUF5, Q8C4I5, Q8C5Q9	Gene names	Jmjd1c, Jhdm2c, Kiaa1380
Domain Architecture	No domain graphic available
Description	Probable JmjC domain-containing histone demethylation protein 2C (EC 1.14.11.-) (Jumonji domain-containing protein 1C).

LMX1A_HUMAN
θ value	4.03905 (rank : 236)	NC score	0.180821 (rank : 199)
Query Neighborhood Hits	334	Target Neighborhood Hits	406	Shared Neighborhood Hits	192
SwissProt Accessions	Q8TE12, Q8TE11	Gene names	LMX1A
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

LMX1A_MOUSE
θ value	4.03905 (rank : 237)	NC score	0.180779 (rank : 201)
Query Neighborhood Hits	334	Target Neighborhood Hits	405	Shared Neighborhood Hits	190
SwissProt Accessions	Q9JKU8	Gene names	Lmx1a
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

MYEF2_MOUSE
θ value	4.03905 (rank : 238)	NC score	0.017026 (rank : 462)
Query Neighborhood Hits	334	Target Neighborhood Hits	247	Shared Neighborhood Hits	5
SwissProt Accessions	Q8C854, Q60690, Q6P930, Q6ZPT3, Q8QZZ1	Gene names	Myef2, Kiaa1341, Mef2
Domain Architecture	No domain graphic available
Description	Myelin expression factor 2 (MyEF-2) (MEF-2).

NKX22_MOUSE
θ value	4.03905 (rank : 239)	NC score	0.191086 (rank : 171)
Query Neighborhood Hits	334	Target Neighborhood Hits	336	Shared Neighborhood Hits	206
SwissProt Accessions	P42586	Gene names	Nkx2-2, Nkx-2.2, Nkx2b
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

NKX23_HUMAN
θ value	4.03905 (rank : 240)	NC score	0.206979 (rank : 132)
Query Neighborhood Hits	334	Target Neighborhood Hits	346	Shared Neighborhood Hits	209
SwissProt Accessions	Q8TAU0, Q9NYS6	Gene names	NKX2-3, NKX23, NKX2C
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NKX-2.3) (Homeobox protein NK-2 homolog C).

PEPP1_HUMAN
θ value	4.03905 (rank : 241)	NC score	0.250896 (rank : 21)
Query Neighborhood Hits	334	Target Neighborhood Hits	338	Shared Neighborhood Hits	202
SwissProt Accessions	Q8NHV9, O95030, Q3SYE0	Gene names	PEPP1, OTEX
Domain Architecture
Description	Paired-like homeobox protein PEPP-1 (Ovary-, testis- and epididymis- expressed gene protein).

POGZ_HUMAN
θ value	4.03905 (rank : 242)	NC score	0.039604 (rank : 408)
Query Neighborhood Hits	334	Target Neighborhood Hits	745	Shared Neighborhood Hits	61
SwissProt Accessions	Q7Z3K3, O75049, Q8TDZ7, Q9Y4X7	Gene names	POGZ, KIAA0461
Domain Architecture
Description	Pogo transposable element with ZNF domain.

POGZ_MOUSE
θ value	4.03905 (rank : 243)	NC score	0.040013 (rank : 407)
Query Neighborhood Hits	334	Target Neighborhood Hits	765	Shared Neighborhood Hits	63
SwissProt Accessions	Q8BZH4, Q4VA94, Q80TZ8, Q8C0K1, Q8K294	Gene names	Pogz, Kiaa0461
Domain Architecture
Description	Pogo transposable element with ZNF domain.

SHOX2_MOUSE
θ value	4.03905 (rank : 244)	NC score	0.226956 (rank : 52)
Query Neighborhood Hits	334	Target Neighborhood Hits	348	Shared Neighborhood Hits	198
SwissProt Accessions	P70390, P70369	Gene names	Shox2, Og12x, Prx3
Domain Architecture
Description	Short stature homeobox protein 2 (Homeobox protein Og12X) (OG-12) (Paired family homeodomain protein Prx3).

SHOX_HUMAN
θ value	4.03905 (rank : 245)	NC score	0.231497 (rank : 41)
Query Neighborhood Hits	334	Target Neighborhood Hits	363	Shared Neighborhood Hits	198
SwissProt Accessions	O15266, O00412, O00413, O15267	Gene names	SHOX, PHOG
Domain Architecture
Description	Short stature homeobox protein (Short stature homeobox-containing protein) (Pseudoautosomal homeobox-containing osteogenic protein).

XRCC1_HUMAN
θ value	4.03905 (rank : 246)	NC score	0.016867 (rank : 463)
Query Neighborhood Hits	334	Target Neighborhood Hits	131	Shared Neighborhood Hits	7
SwissProt Accessions	P18887, Q9HCB1	Gene names	XRCC1
Domain Architecture
Description	DNA-repair protein XRCC1 (X-ray repair cross-complementing protein 1).

ZN426_HUMAN
θ value	4.03905 (rank : 247)	NC score	0.022141 (rank : 441)
Query Neighborhood Hits	334	Target Neighborhood Hits	747	Shared Neighborhood Hits	54
SwissProt Accessions	Q9BUY5	Gene names	ZNF426
Domain Architecture
Description	Zinc finger protein 426.

ZN507_HUMAN
θ value	4.03905 (rank : 248)	NC score	0.048291 (rank : 392)
Query Neighborhood Hits	334	Target Neighborhood Hits	739	Shared Neighborhood Hits	57
SwissProt Accessions	Q8TCN5	Gene names	ZNF507
Domain Architecture	No domain graphic available
Description	Zinc finger protein 507.

CART1_MOUSE
θ value	5.27518 (rank : 249)	NC score	0.209474 (rank : 109)
Query Neighborhood Hits	334	Target Neighborhood Hits	344	Shared Neighborhood Hits	206
SwissProt Accessions	Q8C8B0, Q8C370	Gene names	Cart1
Domain Architecture	No domain graphic available
Description	Cartilage homeoprotein 1 (CART-1).

DMRTD_MOUSE
θ value	5.27518 (rank : 250)	NC score	0.012633 (rank : 471)
Query Neighborhood Hits	334	Target Neighborhood Hits	72	Shared Neighborhood Hits	5
SwissProt Accessions	Q8CGW9	Gene names	Dmrtc2, Dmrt7
Domain Architecture	No domain graphic available
Description	Doublesex- and mab-3-related transcription factor C2 (Doublesex- and mab-3-related transcription factor 7).

DUX4_HUMAN
θ value	5.27518 (rank : 251)	NC score	0.239821 (rank : 29)
Query Neighborhood Hits	334	Target Neighborhood Hits	403	Shared Neighborhood Hits	207
SwissProt Accessions	Q9UBX2	Gene names	DUX4, DUX10
Domain Architecture	No domain graphic available
Description	Double homeobox protein 4 (Double homeobox protein 10) (Double homeobox protein 4/10).

EMX1_HUMAN
θ value	5.27518 (rank : 252)	NC score	0.202969 (rank : 149)
Query Neighborhood Hits	334	Target Neighborhood Hits	336	Shared Neighborhood Hits	210
SwissProt Accessions	Q04741, Q86XB0	Gene names	EMX1
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty spiracles- like protein 1).

ESX1L_HUMAN
θ value	5.27518 (rank : 253)	NC score	0.222011 (rank : 72)
Query Neighborhood Hits	334	Target Neighborhood Hits	498	Shared Neighborhood Hits	197
SwissProt Accessions	Q8N693, Q7Z6K7	Gene names	ESX1L, ESX1R
Domain Architecture
Description	Extraembryonic, spermatogenesis, homeobox 1-like protein.

FER_HUMAN
θ value	5.27518 (rank : 254)	NC score	-0.005621 (rank : 499)
Query Neighborhood Hits	334	Target Neighborhood Hits	1278	Shared Neighborhood Hits	13
SwissProt Accessions	P16591	Gene names	FER, TYK3
Domain Architecture
Description	Proto-oncogene tyrosine-protein kinase FER (EC 2.7.10.2) (p94-FER) (c- FER).

GBX1_HUMAN
θ value	5.27518 (rank : 255)	NC score	0.179037 (rank : 210)
Query Neighborhood Hits	334	Target Neighborhood Hits	334	Shared Neighborhood Hits	181
SwissProt Accessions	Q14549	Gene names	GBX1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

GBX1_MOUSE
θ value	5.27518 (rank : 256)	NC score	0.178231 (rank : 214)
Query Neighborhood Hits	334	Target Neighborhood Hits	350	Shared Neighborhood Hits	180
SwissProt Accessions	P82976, Q8CGW5	Gene names	Gbx1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

GNAS1_MOUSE
θ value	5.27518 (rank : 257)	NC score	0.007432 (rank : 482)
Query Neighborhood Hits	334	Target Neighborhood Hits	651	Shared Neighborhood Hits	24
SwissProt Accessions	Q6R0H7, Q6R0H4, Q6R0H5, Q6R2J5, Q9JJX0, Q9Z1N8	Gene names	Gnas, Gnas1
Domain Architecture	No domain graphic available
Description	Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas (Adenylate cyclase-stimulating G alpha protein) (Extra large alphas protein) (XLalphas).

HPS4_MOUSE
θ value	5.27518 (rank : 258)	NC score	0.015178 (rank : 468)
Query Neighborhood Hits	334	Target Neighborhood Hits	80	Shared Neighborhood Hits	9
SwissProt Accessions	Q99KG7	Gene names	Hps4, Le
Domain Architecture	No domain graphic available
Description	Hermansky-Pudlak syndrome 4 protein homolog (Light-ear protein) (Le protein).

HXB4_HUMAN
θ value	5.27518 (rank : 259)	NC score	0.158097 (rank : 266)
Query Neighborhood Hits	334	Target Neighborhood Hits	376	Shared Neighborhood Hits	202
SwissProt Accessions	P17483, Q9NTA0	Gene names	HOXB4, HOX2F
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2F) (Hox-2.6).

HXB4_MOUSE
θ value	5.27518 (rank : 260)	NC score	0.157156 (rank : 267)
Query Neighborhood Hits	334	Target Neighborhood Hits	375	Shared Neighborhood Hits	202
SwissProt Accessions	P10284, Q3UZB4, Q4VBG0	Gene names	Hoxb4, Hox-2.6, Hoxb-4
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2.6).

HXD4_HUMAN
θ value	5.27518 (rank : 261)	NC score	0.158259 (rank : 265)
Query Neighborhood Hits	334	Target Neighborhood Hits	337	Shared Neighborhood Hits	193
SwissProt Accessions	P09016, Q96AU0	Gene names	HOXD4, HOX4B
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4B) (Hox-5.1) (HHO.C13).

IPP2_HUMAN
θ value	5.27518 (rank : 262)	NC score	0.015319 (rank : 467)
Query Neighborhood Hits	334	Target Neighborhood Hits	14	Shared Neighborhood Hits	2
SwissProt Accessions	P41236	Gene names	PPP1R2, IPP2
Domain Architecture
Description	Protein phosphatase inhibitor 2 (IPP-2).

MIZF_MOUSE
θ value	5.27518 (rank : 263)	NC score	0.038609 (rank : 409)
Query Neighborhood Hits	334	Target Neighborhood Hits	726	Shared Neighborhood Hits	58
SwissProt Accessions	Q8K1K9, Q8BWY0	Gene names	Mizf
Domain Architecture	No domain graphic available
Description	MBD2-interacting zinc finger protein (Methyl-CpG-binding protein 2- interacting zinc finger protein).

MUC1_HUMAN
θ value	5.27518 (rank : 264)	NC score	0.024923 (rank : 433)
Query Neighborhood Hits	334	Target Neighborhood Hits	975	Shared Neighborhood Hits	56
SwissProt Accessions	P15941, P13931, P15942, P17626, Q14128, Q14876, Q16437, Q16442, Q16615, Q9BXA4, Q9UE75, Q9UE76, Q9UQL1, Q9Y4J2	Gene names	MUC1
Domain Architecture
Description	Mucin-1 precursor (MUC-1) (Polymorphic epithelial mucin) (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) (H23AG) (Peanut- reactive urinary mucin) (PUM) (Breast carcinoma-associated antigen DF3) (CD227 antigen).

MYEF2_HUMAN
θ value	5.27518 (rank : 265)	NC score	0.010294 (rank : 475)
Query Neighborhood Hits	334	Target Neighborhood Hits	217	Shared Neighborhood Hits	5
SwissProt Accessions	Q9P2K5, Q6NUM5, Q7L388, Q7Z4B7, Q9H922, Q9NUQ1	Gene names	MYEF2, KIAA1341
Domain Architecture	No domain graphic available
Description	Myelin expression factor 2 (MyEF-2) (MST156).

NGLY1_HUMAN
θ value	5.27518 (rank : 266)	NC score	0.012932 (rank : 470)
Query Neighborhood Hits	334	Target Neighborhood Hits	34	Shared Neighborhood Hits	2
SwissProt Accessions	Q96IV0, Q59FB1, Q6PJD8, Q9BVR8, Q9NR70	Gene names	NGLY1, PNG1
Domain Architecture	No domain graphic available
Description	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase (EC 3.5.1.52) (PNGase) (hPNGase) (Peptide:N-glycanase) (N-glycanase 1).

NKX61_HUMAN
θ value	5.27518 (rank : 267)	NC score	0.205645 (rank : 140)
Query Neighborhood Hits	334	Target Neighborhood Hits	431	Shared Neighborhood Hits	213
SwissProt Accessions	P78426	Gene names	NKX6-1, NKX6A
Domain Architecture
Description	Homeobox protein Nkx-6.1.

NKX61_MOUSE
θ value	5.27518 (rank : 268)	NC score	0.206799 (rank : 135)
Query Neighborhood Hits	334	Target Neighborhood Hits	439	Shared Neighborhood Hits	211
SwissProt Accessions	Q99MA9, Q9ERQ7	Gene names	Nkx6-1, Nkx6.1, Nkx6a
Domain Architecture
Description	Homeobox protein Nkx-6.1.

SPEG_HUMAN
θ value	5.27518 (rank : 269)	NC score	-0.004108 (rank : 497)
Query Neighborhood Hits	334	Target Neighborhood Hits	1762	Shared Neighborhood Hits	29
SwissProt Accessions	Q15772, Q27J74, Q695L1, Q6FGA6, Q6ZQW1, Q6ZTL8, Q9P2P9	Gene names	SPEG, APEG1, KIAA1297
Domain Architecture
Description	Striated muscle preferentially expressed protein kinase (EC 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1).

SUHW2_HUMAN
θ value	5.27518 (rank : 270)	NC score	0.033797 (rank : 417)
Query Neighborhood Hits	334	Target Neighborhood Hits	683	Shared Neighborhood Hits	53
SwissProt Accessions	Q86YH2	Gene names	SUHW2, ZNF632
Domain Architecture	No domain graphic available
Description	Suppressor of hairy wing homolog 2 (5'OY11.1) (Zinc finger protein 632).

THA11_MOUSE
θ value	5.27518 (rank : 271)	NC score	0.017515 (rank : 460)
Query Neighborhood Hits	334	Target Neighborhood Hits	19	Shared Neighborhood Hits	2
SwissProt Accessions	Q9JJD0	Gene names	Thap11
Domain Architecture
Description	THAP domain-containing protein 11.

TLX1_HUMAN
θ value	5.27518 (rank : 272)	NC score	0.180891 (rank : 198)
Query Neighborhood Hits	334	Target Neighborhood Hits	347	Shared Neighborhood Hits	206
SwissProt Accessions	P31314, O75699, Q9HCA0	Gene names	TLX1, HOX11, TCL3
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (TCL-3 proto-oncogene).

YSK4_HUMAN
θ value	5.27518 (rank : 273)	NC score	-0.004807 (rank : 498)
Query Neighborhood Hits	334	Target Neighborhood Hits	921	Shared Neighborhood Hits	9
SwissProt Accessions	Q56UN5, Q56UN1, Q56UN2, Q56UN3, Q56UN4, Q8N4E9, Q9H5T2	Gene names	YSK4, RCK
Domain Architecture	No domain graphic available
Description	SPS1/STE20-related protein kinase YSK4 (EC 2.7.11.1) (Regulated in COPD, protein kinase).

ZN101_HUMAN
θ value	5.27518 (rank : 274)	NC score	0.019325 (rank : 453)
Query Neighborhood Hits	334	Target Neighborhood Hits	731	Shared Neighborhood Hits	49
SwissProt Accessions	Q8IZC7	Gene names	ZNF101
Domain Architecture	No domain graphic available
Description	Zinc finger protein 101 (Zinc finger protein HZF12).

ZN502_HUMAN
θ value	5.27518 (rank : 275)	NC score	0.025260 (rank : 432)
Query Neighborhood Hits	334	Target Neighborhood Hits	762	Shared Neighborhood Hits	55
SwissProt Accessions	Q8TBZ5	Gene names	ZNF502
Domain Architecture	No domain graphic available
Description	Zinc finger protein 502.

ALX3_HUMAN
θ value	6.88961 (rank : 276)	NC score	0.217823 (rank : 83)
Query Neighborhood Hits	334	Target Neighborhood Hits	380	Shared Neighborhood Hits	211
SwissProt Accessions	O95076, O95075	Gene names	ALX3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

ALX3_MOUSE
θ value	6.88961 (rank : 277)	NC score	0.219672 (rank : 80)
Query Neighborhood Hits	334	Target Neighborhood Hits	386	Shared Neighborhood Hits	211
SwissProt Accessions	O70137	Gene names	Alx3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

CBX6_HUMAN
θ value	6.88961 (rank : 278)	NC score	0.007759 (rank : 480)
Query Neighborhood Hits	334	Target Neighborhood Hits	104	Shared Neighborhood Hits	5
SwissProt Accessions	O95503, Q96EM5	Gene names	CBX6
Domain Architecture
Description	Chromobox protein homolog 6.

CDX1_HUMAN
θ value	6.88961 (rank : 279)	NC score	0.176331 (rank : 222)
Query Neighborhood Hits	334	Target Neighborhood Hits	382	Shared Neighborhood Hits	200
SwissProt Accessions	P47902, Q4VAU4, Q9NYK8	Gene names	CDX1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

CHX10_HUMAN
θ value	6.88961 (rank : 280)	NC score	0.207507 (rank : 127)
Query Neighborhood Hits	334	Target Neighborhood Hits	340	Shared Neighborhood Hits	195
SwissProt Accessions	P58304	Gene names	CHX10, VSX2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

CHX10_MOUSE
θ value	6.88961 (rank : 281)	NC score	0.208863 (rank : 115)
Query Neighborhood Hits	334	Target Neighborhood Hits	340	Shared Neighborhood Hits	195
SwissProt Accessions	Q61412	Gene names	Chx10, Vsx2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

CP135_HUMAN
θ value	6.88961 (rank : 282)	NC score	-0.000943 (rank : 493)
Query Neighborhood Hits	334	Target Neighborhood Hits	1290	Shared Neighborhood Hits	13
SwissProt Accessions	Q66GS9, O75130, Q9H8H7	Gene names	CEP135, CEP4, KIAA0635
Domain Architecture	No domain graphic available
Description	Centrosomal protein of 135 kDa (Cep135 protein) (Centrosomal protein 4).

G7D_HUMAN
θ value	6.88961 (rank : 283)	NC score	0.025496 (rank : 430)
Query Neighborhood Hits	334	Target Neighborhood Hits	7	Shared Neighborhood Hits	3
SwissProt Accessions	Q5SSQ6, Q9Y335	Gene names	C6orf26, G7D, NG23
Domain Architecture	No domain graphic available
Description	Protein G7d.

HIPK2_HUMAN
θ value	6.88961 (rank : 284)	NC score	-0.002689 (rank : 495)
Query Neighborhood Hits	334	Target Neighborhood Hits	845	Shared Neighborhood Hits	14
SwissProt Accessions	Q9H2X6, Q75MR7, Q8WWI4, Q9H2Y1	Gene names	HIPK2
Domain Architecture
Description	Homeodomain-interacting protein kinase 2 (EC 2.7.11.1) (hHIPk2).

HXA11_HUMAN
θ value	6.88961 (rank : 285)	NC score	0.164952 (rank : 250)
Query Neighborhood Hits	334	Target Neighborhood Hits	334	Shared Neighborhood Hits	189
SwissProt Accessions	P31270	Gene names	HOXA11, HOX1I
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1I).

HXA11_MOUSE
θ value	6.88961 (rank : 286)	NC score	0.164044 (rank : 257)
Query Neighborhood Hits	334	Target Neighborhood Hits	327	Shared Neighborhood Hits	189
SwissProt Accessions	P31311, Q3V026	Gene names	Hoxa11, Hox-1.9, Hoxa-11
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1.9).

HXB8_HUMAN
θ value	6.88961 (rank : 287)	NC score	0.152733 (rank : 273)
Query Neighborhood Hits	334	Target Neighborhood Hits	324	Shared Neighborhood Hits	201
SwissProt Accessions	P17481, Q9H1I2	Gene names	HOXB8, HOX2D
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4).

HXB8_MOUSE
θ value	6.88961 (rank : 288)	NC score	0.152697 (rank : 274)
Query Neighborhood Hits	334	Target Neighborhood Hits	325	Shared Neighborhood Hits	202
SwissProt Accessions	P09632	Gene names	Hoxb8, Hox-2.4, Hoxb-8
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2.4).

MYL3_MOUSE
θ value	6.88961 (rank : 289)	NC score	0.005443 (rank : 485)
Query Neighborhood Hits	334	Target Neighborhood Hits	70	Shared Neighborhood Hits	3
SwissProt Accessions	P09542, Q3UIF4, Q9CQZ2	Gene names	Myl3, Mlc1v, Mylc
Domain Architecture
Description	Myosin light polypeptide 3 (Myosin light chain 1, slow-twitch muscle B/ventricular isoform) (MLC1SB) (Ventricular/slow twitch myosin alkali light chain).

NKX32_HUMAN
θ value	6.88961 (rank : 290)	NC score	0.172744 (rank : 229)
Query Neighborhood Hits	334	Target Neighborhood Hits	323	Shared Neighborhood Hits	199
SwissProt Accessions	P78367	Gene names	BAPX1, NKX3B
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

NKX32_MOUSE
θ value	6.88961 (rank : 291)	NC score	0.176917 (rank : 219)
Query Neighborhood Hits	334	Target Neighborhood Hits	326	Shared Neighborhood Hits	199
SwissProt Accessions	P97503	Gene names	Bapx1, Nkx-3.2, Nkx3-2, Nkx3b
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

PARM1_HUMAN
θ value	6.88961 (rank : 292)	NC score	0.018937 (rank : 454)
Query Neighborhood Hits	334	Target Neighborhood Hits	86	Shared Neighborhood Hits	10
SwissProt Accessions	Q6UWI2, Q96DV8, Q9Y4S1	Gene names	ames=UNQ1879/PRO4322
Domain Architecture	No domain graphic available
Description	Protein PARM-1 precursor.

PO2F2_HUMAN
θ value	6.88961 (rank : 293)	NC score	0.117978 (rank : 318)
Query Neighborhood Hits	334	Target Neighborhood Hits	379	Shared Neighborhood Hits	181
SwissProt Accessions	P09086, Q16648, Q9BRS4	Gene names	POU2F2, OCT2, OTF2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

PO2F2_MOUSE
θ value	6.88961 (rank : 294)	NC score	0.120264 (rank : 315)
Query Neighborhood Hits	334	Target Neighborhood Hits	353	Shared Neighborhood Hits	180
SwissProt Accessions	Q00196, Q00197, Q00198, Q00199, Q00200, Q00201, Q05882, Q61995, Q61996, Q64245	Gene names	Pou2f2, Oct2, Otf2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

PO3F2_HUMAN
θ value	6.88961 (rank : 295)	NC score	0.111193 (rank : 323)
Query Neighborhood Hits	334	Target Neighborhood Hits	308	Shared Neighborhood Hits	184
SwissProt Accessions	P20265, Q14960, Q86V54, Q9UJL0	Gene names	POU3F2, BRN2, OCT7, OTF7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

PO3F2_MOUSE
θ value	6.88961 (rank : 296)	NC score	0.111192 (rank : 324)
Query Neighborhood Hits	334	Target Neighborhood Hits	313	Shared Neighborhood Hits	184
SwissProt Accessions	P31360	Gene names	Pou3f2, Brn-2, Brn2, Otf7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

PO3F3_HUMAN
θ value	6.88961 (rank : 297)	NC score	0.115543 (rank : 319)
Query Neighborhood Hits	334	Target Neighborhood Hits	311	Shared Neighborhood Hits	184
SwissProt Accessions	P20264, P78379	Gene names	POU3F3, BRN1, OTF8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

PO3F3_MOUSE
θ value	6.88961 (rank : 298)	NC score	0.115520 (rank : 320)
Query Neighborhood Hits	334	Target Neighborhood Hits	308	Shared Neighborhood Hits	184
SwissProt Accessions	P31361	Gene names	Pou3f3, Brn-1, Brn1, Otf8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

PP1B_HUMAN
θ value	6.88961 (rank : 299)	NC score	0.005390 (rank : 486)
Query Neighborhood Hits	334	Target Neighborhood Hits	27	Shared Neighborhood Hits	3
SwissProt Accessions	P62140, P37140, Q5U087, Q6FG45	Gene names	PPP1CB
Domain Architecture
Description	Serine/threonine-protein phosphatase PP1-beta catalytic subunit (EC 3.1.3.16) (PP-1B).

PP1B_MOUSE
θ value	6.88961 (rank : 300)	NC score	0.005390 (rank : 487)
Query Neighborhood Hits	334	Target Neighborhood Hits	27	Shared Neighborhood Hits	3
SwissProt Accessions	P62141, P37140	Gene names	Ppp1cb
Domain Architecture
Description	Serine/threonine-protein phosphatase PP1-beta catalytic subunit (EC 3.1.3.16) (PP-1B).

SDC3_HUMAN
θ value	6.88961 (rank : 301)	NC score	0.017167 (rank : 461)
Query Neighborhood Hits	334	Target Neighborhood Hits	103	Shared Neighborhood Hits	10
SwissProt Accessions	O75056, Q5T1Z6, Q5T1Z7, Q96CT3, Q96PR8	Gene names	SDC3, KIAA0468
Domain Architecture
Description	Syndecan-3 (SYND3).

TCF8_HUMAN
θ value	6.88961 (rank : 302)	NC score	0.027622 (rank : 428)
Query Neighborhood Hits	334	Target Neighborhood Hits	1057	Shared Neighborhood Hits	83
SwissProt Accessions	P37275, Q12924, Q13800	Gene names	TCF8, AREB6
Domain Architecture
Description	Transcription factor 8 (NIL-2-A zinc finger protein) (Negative regulator of IL2).

TITIN_HUMAN
θ value	6.88961 (rank : 303)	NC score	-0.002542 (rank : 494)
Query Neighborhood Hits	334	Target Neighborhood Hits	2923	Shared Neighborhood Hits	47
SwissProt Accessions	Q8WZ42, Q10465, Q10466, Q15598, Q2XUS3, Q32Q60, Q4U1Z6, Q6NSG0, Q6PDB1, Q6PJP0, Q7KYM2, Q7KYN4, Q7KYN5, Q7LDM3, Q7Z2X3, Q8TCG8, Q8WZ51, Q8WZ52, Q8WZ53, Q8WZB3, Q92761, Q92762, Q9UD97, Q9UP84, Q9Y6L9	Gene names	TTN
Domain Architecture	No domain graphic available
Description	Titin (EC 2.7.11.1) (Connectin) (Rhabdomyosarcoma antigen MU-RMS- 40.14).

TXLNG_MOUSE
θ value	6.88961 (rank : 304)	NC score	0.004124 (rank : 488)
Query Neighborhood Hits	334	Target Neighborhood Hits	552	Shared Neighborhood Hits	10
SwissProt Accessions	Q8BHN1, Q8BP11	Gene names	Txlng
Domain Architecture	No domain graphic available
Description	Gamma-taxilin.

VEZF1_HUMAN
θ value	6.88961 (rank : 305)	NC score	0.022149 (rank : 440)
Query Neighborhood Hits	334	Target Neighborhood Hits	744	Shared Neighborhood Hits	52
SwissProt Accessions	Q14119	Gene names	VEZF1, DB1, ZNF161
Domain Architecture	No domain graphic available
Description	Vascular endothelial zinc finger 1 (Zinc finger protein 161) (Putative transcription factor DB1).

ZEP2_MOUSE
θ value	6.88961 (rank : 306)	NC score	0.024045 (rank : 435)
Query Neighborhood Hits	334	Target Neighborhood Hits	964	Shared Neighborhood Hits	58
SwissProt Accessions	Q3UHF7, O55140, Q3UVD4, Q3UVH5	Gene names	Hivep2, Mibp1
Domain Architecture	No domain graphic available
Description	Human immunodeficiency virus type I enhancer-binding protein 2 homolog (Myc intron-binding protein 1) (MIBP-1).

ZN406_HUMAN
θ value	6.88961 (rank : 307)	NC score	0.036455 (rank : 412)
Query Neighborhood Hits	334	Target Neighborhood Hits	794	Shared Neighborhood Hits	58
SwissProt Accessions	Q9P243, Q3MIM5, Q6PJ01, Q75PJ7, Q75PJ9, Q86X64	Gene names	ZNF406, KIAA1485
Domain Architecture	No domain graphic available
Description	Zinc finger protein 406 (Protein ZFAT).

ZN406_MOUSE
θ value	6.88961 (rank : 308)	NC score	0.035101 (rank : 415)
Query Neighborhood Hits	334	Target Neighborhood Hits	800	Shared Neighborhood Hits	57
SwissProt Accessions	Q7TS63	Gene names	Znf406, Zfp406
Domain Architecture	No domain graphic available
Description	Zinc finger protein 406.

ZN471_HUMAN
θ value	6.88961 (rank : 309)	NC score	0.021977 (rank : 443)
Query Neighborhood Hits	334	Target Neighborhood Hits	771	Shared Neighborhood Hits	55
SwissProt Accessions	Q9BX82, O75260, Q8N3V1, Q9P2F1	Gene names	ZNF471, ERP1, KIAA1396
Domain Architecture
Description	Zinc finger protein 471 (EZFIT-related protein 1).

ZN653_HUMAN
θ value	6.88961 (rank : 310)	NC score	0.022315 (rank : 438)
Query Neighborhood Hits	334	Target Neighborhood Hits	719	Shared Neighborhood Hits	53
SwissProt Accessions	Q96CK0, Q96AS7	Gene names	ZNF653, ZIP67
Domain Architecture	No domain graphic available
Description	Zinc finger protein 653 (67 kDa zinc finger protein) (Zinc finger protein Zip67).

ZN653_MOUSE
θ value	6.88961 (rank : 311)	NC score	0.022281 (rank : 439)
Query Neighborhood Hits	334	Target Neighborhood Hits	744	Shared Neighborhood Hits	53
SwissProt Accessions	Q6YND2, Q8BHT8, Q8CI02	Gene names	Znf653, Zfp653, Zip67
Domain Architecture	No domain graphic available
Description	Zinc finger protein 653 (67 kDa zinc finger protein) (Zinc finger protein Zip67).

ANR25_MOUSE
θ value	8.99809 (rank : 312)	NC score	0.000877 (rank : 492)
Query Neighborhood Hits	334	Target Neighborhood Hits	398	Shared Neighborhood Hits	7
SwissProt Accessions	Q8BX02, Q8BLD5, Q91Z35	Gene names	Ankrd25
Domain Architecture	No domain graphic available
Description	Ankyrin repeat domain-containing protein 25.

DDX51_HUMAN
θ value	8.99809 (rank : 313)	NC score	0.001205 (rank : 490)
Query Neighborhood Hits	334	Target Neighborhood Hits	332	Shared Neighborhood Hits	11
SwissProt Accessions	Q8N8A6, Q5CZ71, Q8IXK5, Q96ED1	Gene names	DDX51
Domain Architecture	No domain graphic available
Description	ATP-dependent RNA helicase DDX51 (EC 3.6.1.-) (DEAD box protein 51).

DUS3L_HUMAN
θ value	8.99809 (rank : 314)	NC score	0.007575 (rank : 481)
Query Neighborhood Hits	334	Target Neighborhood Hits	44	Shared Neighborhood Hits	3
SwissProt Accessions	Q96G46, Q96HM5, Q9BSU4, Q9H877, Q9NPR1	Gene names	DUS3L
Domain Architecture	No domain graphic available
Description	tRNA-dihydrouridine synthase 3-like (EC 1.-.-.-).

ELF1_MOUSE
θ value	8.99809 (rank : 315)	NC score	0.011611 (rank : 472)
Query Neighborhood Hits	334	Target Neighborhood Hits	139	Shared Neighborhood Hits	12
SwissProt Accessions	Q60775	Gene names	Elf1
Domain Architecture
Description	ETS-related transcription factor Elf-1 (E74-like factor 1).

EVX1_HUMAN
θ value	8.99809 (rank : 316)	NC score	0.179179 (rank : 209)
Query Neighborhood Hits	334	Target Neighborhood Hits	349	Shared Neighborhood Hits	197
SwissProt Accessions	P49640	Gene names	EVX1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

EVX1_MOUSE
θ value	8.99809 (rank : 317)	NC score	0.185438 (rank : 184)
Query Neighborhood Hits	334	Target Neighborhood Hits	350	Shared Neighborhood Hits	198
SwissProt Accessions	P23683	Gene names	Evx1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

FANCJ_HUMAN
θ value	8.99809 (rank : 318)	NC score	0.008521 (rank : 478)
Query Neighborhood Hits	334	Target Neighborhood Hits	72	Shared Neighborhood Hits	4
SwissProt Accessions	Q9BX63, Q8NCI5	Gene names	BRIP1, BACH1, FANCJ
Domain Architecture	No domain graphic available
Description	Fanconi anemia group J protein (EC 3.6.1.-) (ATP-dependent RNA helicase BRIP1) (Protein FACJ) (BRCA1-interacting protein C-terminal helicase 1) (BRCA1-interacting protein 1) (BRCA1-associated C-terminal helicase 1).

HLXB9_MOUSE
θ value	8.99809 (rank : 319)	NC score	0.176270 (rank : 223)
Query Neighborhood Hits	334	Target Neighborhood Hits	354	Shared Neighborhood Hits	208
SwissProt Accessions	Q9QZW9	Gene names	Hlxb9
Domain Architecture
Description	Homeobox protein HB9.

HXC8_HUMAN
θ value	8.99809 (rank : 320)	NC score	0.150179 (rank : 277)
Query Neighborhood Hits	334	Target Neighborhood Hits	327	Shared Neighborhood Hits	201
SwissProt Accessions	P31273, O15221, O15362	Gene names	HOXC8, HOX3A
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3A).

HXC8_MOUSE
θ value	8.99809 (rank : 321)	NC score	0.150192 (rank : 276)
Query Neighborhood Hits	334	Target Neighborhood Hits	327	Shared Neighborhood Hits	201
SwissProt Accessions	P09025	Gene names	Hoxc8, Hox-3.1, Hoxc-8
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3.1) (M31).

MSX3_MOUSE
θ value	8.99809 (rank : 322)	NC score	0.184760 (rank : 185)
Query Neighborhood Hits	334	Target Neighborhood Hits	330	Shared Neighborhood Hits	198
SwissProt Accessions	P70354, P70246, Q03360, Q80W10	Gene names	Msx3, Msx-3
Domain Architecture
Description	Homeobox protein MSX-3.

PF21B_HUMAN
θ value	8.99809 (rank : 323)	NC score	0.017902 (rank : 459)
Query Neighborhood Hits	334	Target Neighborhood Hits	197	Shared Neighborhood Hits	10
SwissProt Accessions	Q96EK2, Q5TFL2, Q6ICC0	Gene names	PHF21B
Domain Architecture	No domain graphic available
Description	PHD finger protein 21B.

PF21B_MOUSE
θ value	8.99809 (rank : 324)	NC score	0.014340 (rank : 469)
Query Neighborhood Hits	334	Target Neighborhood Hits	278	Shared Neighborhood Hits	21
SwissProt Accessions	Q8C966	Gene names	Phf21b
Domain Architecture	No domain graphic available
Description	PHD finger protein 21B.

PO5F1_HUMAN
θ value	8.99809 (rank : 325)	NC score	0.100395 (rank : 336)
Query Neighborhood Hits	334	Target Neighborhood Hits	321	Shared Neighborhood Hits	173
SwissProt Accessions	Q01860, P31359, Q15167, Q15168, Q16422	Gene names	POU5F1, OCT3, OCT4, OTF3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4).

RLF_HUMAN
θ value	8.99809 (rank : 326)	NC score	0.024334 (rank : 434)
Query Neighborhood Hits	334	Target Neighborhood Hits	775	Shared Neighborhood Hits	52
SwissProt Accessions	Q13129, Q9NU60	Gene names	RLF
Domain Architecture	No domain graphic available
Description	Zinc finger protein Rlf (Rearranged L-myc fusion gene protein) (Zn-15- related protein).

SF3A2_MOUSE
θ value	8.99809 (rank : 327)	NC score	0.010907 (rank : 473)
Query Neighborhood Hits	334	Target Neighborhood Hits	247	Shared Neighborhood Hits	11
SwissProt Accessions	Q62203	Gene names	Sf3a2, Sap62
Domain Architecture
Description	Splicing factor 3A subunit 2 (Spliceosome-associated protein 62) (SAP 62) (SF3a66).

TAOK3_HUMAN
θ value	8.99809 (rank : 328)	NC score	0.000996 (rank : 491)
Query Neighborhood Hits	334	Target Neighborhood Hits	1494	Shared Neighborhood Hits	18
SwissProt Accessions	Q9H2K8, Q658N1, Q8IUM4, Q9HC79, Q9NZM9, Q9UHG7	Gene names	TAOK3, DPK, JIK, KDS, MAP3K18
Domain Architecture	No domain graphic available
Description	Serine/threonine-protein kinase TAO3 (EC 2.7.11.1) (Thousand and one amino acid protein 3) (Jun kinase-inhibitory kinase) (JNK/SAPK- inhibitory kinase) (Dendritic cell-derived protein kinase) (Cutaneous T-cell lymphoma tumor antigen HD-CL-09) (CTCL tumor antigen HD-CL-09) (Kinase from chicken homolog A) (hKFC-A).

TAOK3_MOUSE
θ value	8.99809 (rank : 329)	NC score	-0.003103 (rank : 496)
Query Neighborhood Hits	334	Target Neighborhood Hits	1458	Shared Neighborhood Hits	16
SwissProt Accessions	Q8BYC6, Q3V3B3	Gene names	Taok3
Domain Architecture	No domain graphic available
Description	Serine/threonine-protein kinase TAO3 (EC 2.7.11.1) (Thousand and one amino acid protein 3).

TCF8_MOUSE
θ value	8.99809 (rank : 330)	NC score	0.029088 (rank : 426)
Query Neighborhood Hits	334	Target Neighborhood Hits	1067	Shared Neighborhood Hits	84
SwissProt Accessions	Q64318, Q62519	Gene names	Tcf8, Zfhx1a, Zfx1a, Zfx1ha
Domain Architecture
Description	Transcription factor 8 (Zinc finger homeobox protein 1a) (MEB1) (Delta EF1).

ZN431_HUMAN
θ value	8.99809 (rank : 331)	NC score	0.020347 (rank : 450)
Query Neighborhood Hits	334	Target Neighborhood Hits	765	Shared Neighborhood Hits	52
SwissProt Accessions	Q8TF32, Q8IWC4	Gene names	ZNF431, KIAA1969
Domain Architecture
Description	Zinc finger protein 431.

ZN491_HUMAN
θ value	8.99809 (rank : 332)	NC score	0.018777 (rank : 456)
Query Neighborhood Hits	334	Target Neighborhood Hits	734	Shared Neighborhood Hits	50
SwissProt Accessions	Q8N8L2, Q8NAT8	Gene names	ZNF491
Domain Architecture	No domain graphic available
Description	Zinc finger protein 491.

ZN501_HUMAN
θ value	8.99809 (rank : 333)	NC score	0.021657 (rank : 447)
Query Neighborhood Hits	334	Target Neighborhood Hits	745	Shared Neighborhood Hits	56
SwissProt Accessions	Q96CX3, Q96NU9	Gene names	ZNF501, ZNF52
Domain Architecture	No domain graphic available
Description	Zinc finger protein 501 (Zinc finger protein 52).

ZN621_HUMAN
θ value	8.99809 (rank : 334)	NC score	0.018918 (rank : 455)
Query Neighborhood Hits	334	Target Neighborhood Hits	737	Shared Neighborhood Hits	52
SwissProt Accessions	Q6ZSS3, Q8TE91	Gene names	ZNF621
Domain Architecture	No domain graphic available
Description	Zinc finger protein 621.

BSH_MOUSE
θ value	θ > 10 (rank : 335)	NC score	0.188972 (rank : 173)
Query Neighborhood Hits	334	Target Neighborhood Hits	349	Shared Neighborhood Hits	208
SwissProt Accessions	Q810B3	Gene names	Bsx
Domain Architecture	No domain graphic available
Description	Brain-specific homeobox protein homolog.

CDX1_MOUSE
θ value	θ > 10 (rank : 336)	NC score	0.172289 (rank : 230)
Query Neighborhood Hits	334	Target Neighborhood Hits	379	Shared Neighborhood Hits	195
SwissProt Accessions	P18111, Q8VCF7	Gene names	Cdx1, Cdx-1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

CDX2_HUMAN
θ value	θ > 10 (rank : 337)	NC score	0.164203 (rank : 256)
Query Neighborhood Hits	334	Target Neighborhood Hits	330	Shared Neighborhood Hits	192
SwissProt Accessions	Q99626, O00503, Q969L8	Gene names	CDX2, CDX3
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2) (CDX-3).

CDX2_MOUSE
θ value	θ > 10 (rank : 338)	NC score	0.167733 (rank : 244)
Query Neighborhood Hits	334	Target Neighborhood Hits	336	Shared Neighborhood Hits	193
SwissProt Accessions	P43241	Gene names	Cdx2, Cdx-2
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2).

CDX4_HUMAN
θ value	θ > 10 (rank : 339)	NC score	0.179665 (rank : 207)
Query Neighborhood Hits	334	Target Neighborhood Hits	366	Shared Neighborhood Hits	201
SwissProt Accessions	O14627, Q5JS20	Gene names	CDX4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

CRX_HUMAN
θ value	θ > 10 (rank : 340)	NC score	0.225910 (rank : 53)
Query Neighborhood Hits	334	Target Neighborhood Hits	360	Shared Neighborhood Hits	205
SwissProt Accessions	O43186	Gene names	CRX, CORD2
Domain Architecture
Description	Cone-rod homeobox protein.

CRX_MOUSE
θ value	θ > 10 (rank : 341)	NC score	0.221172 (rank : 73)
Query Neighborhood Hits	334	Target Neighborhood Hits	359	Shared Neighborhood Hits	201
SwissProt Accessions	O54751	Gene names	Crx
Domain Architecture
Description	Cone-rod homeobox protein.

CUTL2_HUMAN
θ value	θ > 10 (rank : 342)	NC score	0.070153 (rank : 357)
Query Neighborhood Hits	334	Target Neighborhood Hits	906	Shared Neighborhood Hits	143
SwissProt Accessions	O14529	Gene names	CUTL2, KIAA0293
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

CUTL2_MOUSE
θ value	θ > 10 (rank : 343)	NC score	0.065812 (rank : 370)
Query Neighborhood Hits	334	Target Neighborhood Hits	771	Shared Neighborhood Hits	137
SwissProt Accessions	P70298	Gene names	Cutl2
Domain Architecture
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

DUX2_HUMAN
θ value	θ > 10 (rank : 344)	NC score	0.169066 (rank : 240)
Query Neighborhood Hits	334	Target Neighborhood Hits	173	Shared Neighborhood Hits	126
SwissProt Accessions	O75505	Gene names	DUX2
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 2.

EVX2_HUMAN
θ value	θ > 10 (rank : 345)	NC score	0.177277 (rank : 218)
Query Neighborhood Hits	334	Target Neighborhood Hits	325	Shared Neighborhood Hits	193
SwissProt Accessions	Q03828	Gene names	EVX2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

EVX2_MOUSE
θ value	θ > 10 (rank : 346)	NC score	0.179508 (rank : 208)
Query Neighborhood Hits	334	Target Neighborhood Hits	327	Shared Neighborhood Hits	196
SwissProt Accessions	P49749	Gene names	Evx2, Evx-2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

GSH2_HUMAN
θ value	θ > 10 (rank : 347)	NC score	0.169008 (rank : 241)
Query Neighborhood Hits	334	Target Neighborhood Hits	324	Shared Neighborhood Hits	199
SwissProt Accessions	Q9BZM3	Gene names	GSH2
Domain Architecture
Description	Homeobox protein GSH-2.

GSH2_MOUSE
θ value	θ > 10 (rank : 348)	NC score	0.167159 (rank : 245)
Query Neighborhood Hits	334	Target Neighborhood Hits	319	Shared Neighborhood Hits	198
SwissProt Accessions	P31316	Gene names	Gsh2, Gsh-2
Domain Architecture
Description	Homeobox protein GSH-2.

GSHI_HUMAN
θ value	θ > 10 (rank : 349)	NC score	0.165262 (rank : 249)
Query Neighborhood Hits	334	Target Neighborhood Hits	314	Shared Neighborhood Hits	198
SwissProt Accessions	Q9H4S2	Gene names	GSH1
Domain Architecture
Description	Homeobox protein GSH-1.

GSHI_MOUSE
θ value	θ > 10 (rank : 350)	NC score	0.165980 (rank : 248)
Query Neighborhood Hits	334	Target Neighborhood Hits	313	Shared Neighborhood Hits	196
SwissProt Accessions	P31315	Gene names	Gsh1, Gsh-1
Domain Architecture
Description	Homeobox protein GSH-1.

HESX1_HUMAN
θ value	θ > 10 (rank : 351)	NC score	0.198917 (rank : 157)
Query Neighborhood Hits	334	Target Neighborhood Hits	326	Shared Neighborhood Hits	193
SwissProt Accessions	Q9UBX0, Q99667	Gene names	HESX1, HANF
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (hAnf).

HESX1_MOUSE
θ value	θ > 10 (rank : 352)	NC score	0.195320 (rank : 167)
Query Neighborhood Hits	334	Target Neighborhood Hits	331	Shared Neighborhood Hits	192
SwissProt Accessions	Q61658, Q61047	Gene names	Hesx1, Hes-1, Rpx
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (Anterior- restricted homeobox protein) (Rathke pouch homeo box).

HHEX_HUMAN
θ value	θ > 10 (rank : 353)	NC score	0.183568 (rank : 189)
Query Neighborhood Hits	334	Target Neighborhood Hits	358	Shared Neighborhood Hits	196
SwissProt Accessions	Q03014	Gene names	HHEX, HEX, PRH, PRHX
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

HHEX_MOUSE
θ value	θ > 10 (rank : 354)	NC score	0.189740 (rank : 172)
Query Neighborhood Hits	334	Target Neighborhood Hits	350	Shared Neighborhood Hits	201
SwissProt Accessions	P43120	Gene names	Hhex, Prhx
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

HLX1_HUMAN
θ value	θ > 10 (rank : 355)	NC score	0.179036 (rank : 211)
Query Neighborhood Hits	334	Target Neighborhood Hits	370	Shared Neighborhood Hits	197
SwissProt Accessions	Q14774, Q15988	Gene names	HLX1
Domain Architecture
Description	Homeobox protein HLX1 (Homeobox protein HB24).

HLX1_MOUSE
θ value	θ > 10 (rank : 356)	NC score	0.181069 (rank : 197)
Query Neighborhood Hits	334	Target Neighborhood Hits	362	Shared Neighborhood Hits	195
SwissProt Accessions	Q61670	Gene names	Hlx1, Hlx
Domain Architecture
Description	Homeobox protein HLX1.

HLXB9_HUMAN
θ value	θ > 10 (rank : 357)	NC score	0.175511 (rank : 224)
Query Neighborhood Hits	334	Target Neighborhood Hits	336	Shared Neighborhood Hits	205
SwissProt Accessions	P50219, Q9Y648	Gene names	HLXB9
Domain Architecture
Description	Homeobox protein HB9.

HMBX1_HUMAN
θ value	θ > 10 (rank : 358)	NC score	0.062938 (rank : 373)
Query Neighborhood Hits	334	Target Neighborhood Hits	118	Shared Neighborhood Hits	72
SwissProt Accessions	Q6NT76, Q3Y6P1, Q96GS5, Q9H701	Gene names	HMBOX1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

HMBX1_MOUSE
θ value	θ > 10 (rank : 359)	NC score	0.054154 (rank : 384)
Query Neighborhood Hits	334	Target Neighborhood Hits	117	Shared Neighborhood Hits	71
SwissProt Accessions	Q8BJA3, Q80WC2, Q8BWE7, Q99LV1	Gene names	Hmbox1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

HOP_HUMAN
θ value	θ > 10 (rank : 360)	NC score	0.119382 (rank : 317)
Query Neighborhood Hits	334	Target Neighborhood Hits	107	Shared Neighborhood Hits	74
SwissProt Accessions	Q9BPY8, Q8N0V6, Q96CI1	Gene names	HOP, HOD, LAGY, NECC1, OB1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Lung cancer-associated Y protein) (Odd homeobox protein 1) (Not expressed in choriocarcinoma protein 1).

HOP_MOUSE
θ value	θ > 10 (rank : 361)	NC score	0.112255 (rank : 322)
Query Neighborhood Hits	334	Target Neighborhood Hits	102	Shared Neighborhood Hits	70
SwissProt Accessions	Q8R1H0, Q8C1N5, Q8CJ22	Gene names	Hop, Hod, Ob1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Homeobox-only protein) (Odd homeobox protein 1) (mOB1).

HXA10_HUMAN
θ value	θ > 10 (rank : 362)	NC score	0.139431 (rank : 308)
Query Neighborhood Hits	334	Target Neighborhood Hits	334	Shared Neighborhood Hits	192
SwissProt Accessions	P31260, O43370, O43605, Q15949	Gene names	HOXA10, HOX1H
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL).

HXA10_MOUSE
θ value	θ > 10 (rank : 363)	NC score	0.138487 (rank : 309)
Query Neighborhood Hits	334	Target Neighborhood Hits	365	Shared Neighborhood Hits	192
SwissProt Accessions	P31310, Q80Y22	Gene names	Hoxa10, Hox-1.8, Hoxa-10
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1.8).

HXA1_HUMAN
θ value	θ > 10 (rank : 364)	NC score	0.170370 (rank : 237)
Query Neighborhood Hits	334	Target Neighborhood Hits	334	Shared Neighborhood Hits	203
SwissProt Accessions	P49639, O43363	Gene names	HOXA1, HOX1F
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1F).

HXA1_MOUSE
θ value	θ > 10 (rank : 365)	NC score	0.171386 (rank : 233)
Query Neighborhood Hits	334	Target Neighborhood Hits	341	Shared Neighborhood Hits	205
SwissProt Accessions	P09022, P15463	Gene names	Hoxa1, Era-1, Hox-1.6, Hoxa-1
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399).

HXA2_HUMAN
θ value	θ > 10 (rank : 366)	NC score	0.156538 (rank : 269)
Query Neighborhood Hits	334	Target Neighborhood Hits	370	Shared Neighborhood Hits	194
SwissProt Accessions	O43364	Gene names	HOXA2
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A2.

HXA2_MOUSE
θ value	θ > 10 (rank : 367)	NC score	0.156913 (rank : 268)
Query Neighborhood Hits	334	Target Neighborhood Hits	338	Shared Neighborhood Hits	194
SwissProt Accessions	P31245, Q149U3, Q920T8	Gene names	Hoxa2, Hox-1.11, Hoxa-2
Domain Architecture
Description	Homeobox protein Hox-A2 (Hox-1.11) (Hox1.11).

HXA4_HUMAN
θ value	θ > 10 (rank : 368)	NC score	0.155533 (rank : 270)
Query Neighborhood Hits	334	Target Neighborhood Hits	370	Shared Neighborhood Hits	200
SwissProt Accessions	Q00056, O43366	Gene names	HOXA4, HOX1D
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4).

HXA4_MOUSE
θ value	θ > 10 (rank : 369)	NC score	0.155287 (rank : 271)
Query Neighborhood Hits	334	Target Neighborhood Hits	379	Shared Neighborhood Hits	200
SwissProt Accessions	P06798, Q61684, Q64388, Q8BPE6	Gene names	Hoxa4, Hox-1.4, Hoxa-4
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1.4) (Homeobox protein MH-3).

HXA5_HUMAN
θ value	θ > 10 (rank : 370)	NC score	0.144988 (rank : 294)
Query Neighborhood Hits	334	Target Neighborhood Hits	336	Shared Neighborhood Hits	195
SwissProt Accessions	P20719, O43367, Q96CY6	Gene names	HOXA5, HOX1C
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1C).

HXA5_MOUSE
θ value	θ > 10 (rank : 371)	NC score	0.145032 (rank : 293)
Query Neighborhood Hits	334	Target Neighborhood Hits	338	Shared Neighborhood Hits	194
SwissProt Accessions	P09021, Q91VQ5	Gene names	Hoxa5, Hox-1.3, Hoxa-5
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1.3) (M2).

HXA6_HUMAN
θ value	θ > 10 (rank : 372)	NC score	0.146260 (rank : 286)
Query Neighborhood Hits	334	Target Neighborhood Hits	309	Shared Neighborhood Hits	198
SwissProt Accessions	P31267, Q9UPM0	Gene names	HOXA6, HOX1B
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A6 (Hox-1B).

HXA6_MOUSE
θ value	θ > 10 (rank : 373)	NC score	0.145285 (rank : 292)
Query Neighborhood Hits	334	Target Neighborhood Hits	304	Shared Neighborhood Hits	193
SwissProt Accessions	P09092, Q9JI98	Gene names	Hoxa6, Hox-1.2, Hoxa-6
Domain Architecture
Description	Homeobox protein Hox-A6 (Hox-1.2) (M5-4).

HXA7_HUMAN
θ value	θ > 10 (rank : 374)	NC score	0.145876 (rank : 289)
Query Neighborhood Hits	334	Target Neighborhood Hits	309	Shared Neighborhood Hits	193
SwissProt Accessions	P31268, O43368, O43486, O95655, Q9NSC8, Q9UDM1	Gene names	HOXA7, HOX1A
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1).

HXA7_MOUSE
θ value	θ > 10 (rank : 375)	NC score	0.148938 (rank : 281)
Query Neighborhood Hits	334	Target Neighborhood Hits	318	Shared Neighborhood Hits	195
SwissProt Accessions	P02830, Q544P0	Gene names	Hoxa7, Hox-1.1, Hoxa-7
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1.1) (M6-12) (M6).

HXA9_HUMAN
θ value	θ > 10 (rank : 376)	NC score	0.146390 (rank : 285)
Query Neighborhood Hits	334	Target Neighborhood Hits	332	Shared Neighborhood Hits	202
SwissProt Accessions	P31269, O43369, O43429, Q99820	Gene names	HOXA9, HOX1G
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1G).

HXA9_MOUSE
θ value	θ > 10 (rank : 377)	NC score	0.146659 (rank : 284)
Query Neighborhood Hits	334	Target Neighborhood Hits	334	Shared Neighborhood Hits	202
SwissProt Accessions	P09631, O70154, O70155	Gene names	Hoxa9, Hox-1.7, Hoxa-9
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1.7).

HXB1_HUMAN
θ value	θ > 10 (rank : 378)	NC score	0.170577 (rank : 236)
Query Neighborhood Hits	334	Target Neighborhood Hits	356	Shared Neighborhood Hits	206
SwissProt Accessions	P14653	Gene names	HOXB1, HOX2I
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2I).

HXB1_MOUSE
θ value	θ > 10 (rank : 379)	NC score	0.170000 (rank : 239)
Query Neighborhood Hits	334	Target Neighborhood Hits	341	Shared Neighborhood Hits	206
SwissProt Accessions	P17919, Q3ZAY6, Q9CYH3	Gene names	Hoxb1, Hox-2.9, Hoxb-1
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2.9).

HXB2_MOUSE
θ value	θ > 10 (rank : 380)	NC score	0.164815 (rank : 251)
Query Neighborhood Hits	334	Target Neighborhood Hits	350	Shared Neighborhood Hits	193
SwissProt Accessions	P0C1T1	Gene names	Hoxb2, Hox-2.8
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-B2 (Hox-2.8).

HXB3_HUMAN
θ value	θ > 10 (rank : 381)	NC score	0.162125 (rank : 259)
Query Neighborhood Hits	334	Target Neighborhood Hits	559	Shared Neighborhood Hits	207
SwissProt Accessions	P14651, O95615, P17484	Gene names	HOXB3, HOX2G
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7).

HXB3_MOUSE
θ value	θ > 10 (rank : 382)	NC score	0.163031 (rank : 258)
Query Neighborhood Hits	334	Target Neighborhood Hits	493	Shared Neighborhood Hits	202
SwissProt Accessions	P09026, P10285, Q4PJ06, Q61680	Gene names	Hoxb3, Hox-2.7, Hoxb-3
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2.7) (Homeobox protein MH-23).

HXB5_HUMAN
θ value	θ > 10 (rank : 383)	NC score	0.143957 (rank : 297)
Query Neighborhood Hits	334	Target Neighborhood Hits	332	Shared Neighborhood Hits	195
SwissProt Accessions	P09067, P09069	Gene names	HOXB5, HOX2A
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2A) (HHO.C10) (HU-1).

HXB5_MOUSE
θ value	θ > 10 (rank : 384)	NC score	0.143818 (rank : 298)
Query Neighborhood Hits	334	Target Neighborhood Hits	337	Shared Neighborhood Hits	196
SwissProt Accessions	P09079, Q3ZAY8	Gene names	Hoxb5, Hox-2.1, Hoxb-5
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2.1) (MU-1) (H24.1).

HXB6_HUMAN
θ value	θ > 10 (rank : 385)	NC score	0.146022 (rank : 288)
Query Neighborhood Hits	334	Target Neighborhood Hits	307	Shared Neighborhood Hits	194
SwissProt Accessions	P17509, P09068, Q9HB11, Q9UGH2	Gene names	HOXB6, HOX2B
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2).

HXB6_MOUSE
θ value	θ > 10 (rank : 386)	NC score	0.146058 (rank : 287)
Query Neighborhood Hits	334	Target Neighborhood Hits	309	Shared Neighborhood Hits	194
SwissProt Accessions	P09023	Gene names	Hoxb6, Hox-2.2, Hoxb-6
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2.2) (Homeobox protein MH-22A).

HXB7_HUMAN
θ value	θ > 10 (rank : 387)	NC score	0.149198 (rank : 280)
Query Neighborhood Hits	334	Target Neighborhood Hits	311	Shared Neighborhood Hits	193
SwissProt Accessions	P09629, Q15957	Gene names	HOXB7, HOX2C
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2C) (HHO.C1).

HXB7_MOUSE
θ value	θ > 10 (rank : 388)	NC score	0.149989 (rank : 278)
Query Neighborhood Hits	334	Target Neighborhood Hits	314	Shared Neighborhood Hits	193
SwissProt Accessions	P09024, Q3UW15	Gene names	Hoxb7, Hox-2.3, Hoxb-7
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2.3) (MUB1) (Homeobox protein MH-22B).

HXB9_HUMAN
θ value	θ > 10 (rank : 389)	NC score	0.144806 (rank : 295)
Query Neighborhood Hits	334	Target Neighborhood Hits	344	Shared Neighborhood Hits	199
SwissProt Accessions	P17482, Q9H1I1	Gene names	HOXB9, HOX2E
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5).

HXB9_MOUSE
θ value	θ > 10 (rank : 390)	NC score	0.144532 (rank : 296)
Query Neighborhood Hits	334	Target Neighborhood Hits	344	Shared Neighborhood Hits	198
SwissProt Accessions	P20615	Gene names	Hoxb9, Hox-2.5, Hoxb-9
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2.5).

HXC10_HUMAN
θ value	θ > 10 (rank : 391)	NC score	0.145443 (rank : 291)
Query Neighborhood Hits	334	Target Neighborhood Hits	417	Shared Neighborhood Hits	201
SwissProt Accessions	Q9NYD6, O15219, O15220, Q9BVD5	Gene names	HOXC10
Domain Architecture
Description	Homeobox protein Hox-C10.

HXC10_MOUSE
θ value	θ > 10 (rank : 392)	NC score	0.145863 (rank : 290)
Query Neighborhood Hits	334	Target Neighborhood Hits	417	Shared Neighborhood Hits	200
SwissProt Accessions	P31257, P31312, Q7TMT7	Gene names	Hoxc10, Hox-3.6, Hoxc-10
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C10 (Hox-3.6).

HXC11_HUMAN
θ value	θ > 10 (rank : 393)	NC score	0.164454 (rank : 252)
Query Neighborhood Hits	334	Target Neighborhood Hits	349	Shared Neighborhood Hits	201
SwissProt Accessions	O43248, Q96DH2	Gene names	HOXC11
Domain Architecture
Description	Homeobox protein Hox-C11.

HXC12_HUMAN
θ value	θ > 10 (rank : 394)	NC score	0.170018 (rank : 238)
Query Neighborhood Hits	334	Target Neighborhood Hits	313	Shared Neighborhood Hits	190
SwissProt Accessions	P31275, Q9BXJ6	Gene names	HOXC12, HOX3F
Domain Architecture
Description	Homeobox protein Hox-C12 (Hox-3F).

HXC12_MOUSE
θ value	θ > 10 (rank : 395)	NC score	0.168013 (rank : 243)
Query Neighborhood Hits	334	Target Neighborhood Hits	316	Shared Neighborhood Hits	190
SwissProt Accessions	Q8K5B8	Gene names	Hoxc12, Hox-3.8, Hoxc-12
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C12 (Hox-3.8).

HXC5_HUMAN
θ value	θ > 10 (rank : 396)	NC score	0.148022 (rank : 282)
Query Neighborhood Hits	334	Target Neighborhood Hits	316	Shared Neighborhood Hits	192
SwissProt Accessions	Q00444	Gene names	HOXC5, HOX3D
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3D) (CP11).

HXC5_MOUSE
θ value	θ > 10 (rank : 397)	NC score	0.147858 (rank : 283)
Query Neighborhood Hits	334	Target Neighborhood Hits	316	Shared Neighborhood Hits	191
SwissProt Accessions	P32043, Q8BJW4	Gene names	Hoxc5, Hox-3.4, Hoxc-5
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3.4) (Hox-6.2).

HXC6_HUMAN
θ value	θ > 10 (rank : 398)	NC score	0.143123 (rank : 299)
Query Neighborhood Hits	334	Target Neighborhood Hits	306	Shared Neighborhood Hits	191
SwissProt Accessions	P09630	Gene names	HOXC6, HOX3C
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3C) (HHO.C8) (CP25).

HXC6_MOUSE
θ value	θ > 10 (rank : 399)	NC score	0.143123 (rank : 300)
Query Neighborhood Hits	334	Target Neighborhood Hits	306	Shared Neighborhood Hits	191
SwissProt Accessions	P10629, Q61683	Gene names	Hoxc6, Hox-3.3, Hoxc-6
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3.3) (Hox-6.1).

HXC9_HUMAN
θ value	θ > 10 (rank : 400)	NC score	0.139855 (rank : 305)
Query Neighborhood Hits	334	Target Neighborhood Hits	339	Shared Neighborhood Hits	198
SwissProt Accessions	P31274, Q9H1I0	Gene names	HOXC9, HOX3B
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3B).

HXC9_MOUSE
θ value	θ > 10 (rank : 401)	NC score	0.139844 (rank : 306)
Query Neighborhood Hits	334	Target Neighborhood Hits	338	Shared Neighborhood Hits	198
SwissProt Accessions	P09633	Gene names	Hoxc9, Hox-3.2, Hoxc-9
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3.2).

HXD10_HUMAN
θ value	θ > 10 (rank : 402)	NC score	0.143032 (rank : 301)
Query Neighborhood Hits	334	Target Neighborhood Hits	392	Shared Neighborhood Hits	204
SwissProt Accessions	P28358	Gene names	HOXD10, HOX4D
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4D) (Hox-4E).

HXD10_MOUSE
θ value	θ > 10 (rank : 403)	NC score	0.143022 (rank : 302)
Query Neighborhood Hits	334	Target Neighborhood Hits	392	Shared Neighborhood Hits	202
SwissProt Accessions	P28359, Q91WU9	Gene names	Hoxd10, Hox-4.5, Hoxd-10
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4.5) (Hox-5.3).

HXD1_HUMAN
θ value	θ > 10 (rank : 404)	NC score	0.159945 (rank : 264)
Query Neighborhood Hits	334	Target Neighborhood Hits	337	Shared Neighborhood Hits	203
SwissProt Accessions	Q9GZZ0	Gene names	HOXD1
Domain Architecture
Description	Homeobox protein Hox-D1.

HXD1_MOUSE
θ value	θ > 10 (rank : 405)	NC score	0.160131 (rank : 263)
Query Neighborhood Hits	334	Target Neighborhood Hits	381	Shared Neighborhood Hits	203
SwissProt Accessions	Q01822	Gene names	Hoxd1, Hox-4.9, Hoxd-1
Domain Architecture
Description	Homeobox protein Hox-D1 (Hox-4.9).

HXD4_MOUSE
θ value	θ > 10 (rank : 406)	NC score	0.152409 (rank : 275)
Query Neighborhood Hits	334	Target Neighborhood Hits	339	Shared Neighborhood Hits	190
SwissProt Accessions	P10628, P97451, Q3UXL6	Gene names	Hoxd4, Hox-4.2, Hoxd-4
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4.2) (Hox-5.1).

HXD8_HUMAN
θ value	θ > 10 (rank : 407)	NC score	0.149977 (rank : 279)
Query Neighborhood Hits	334	Target Neighborhood Hits	338	Shared Neighborhood Hits	201
SwissProt Accessions	P13378	Gene names	HOXD8, HOX4E
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4).

HXD8_MOUSE
θ value	θ > 10 (rank : 408)	NC score	0.152919 (rank : 272)
Query Neighborhood Hits	334	Target Neighborhood Hits	333	Shared Neighborhood Hits	201
SwissProt Accessions	P23463	Gene names	Hoxd8, Hox-4.3, Hoxd-8
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4).

HXD9_HUMAN
θ value	θ > 10 (rank : 409)	NC score	0.142883 (rank : 303)
Query Neighborhood Hits	334	Target Neighborhood Hits	352	Shared Neighborhood Hits	202
SwissProt Accessions	P28356	Gene names	HOXD9, HOX4C
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2).

HXD9_MOUSE
θ value	θ > 10 (rank : 410)	NC score	0.141534 (rank : 304)
Query Neighborhood Hits	334	Target Neighborhood Hits	359	Shared Neighborhood Hits	201
SwissProt Accessions	P28357, Q3UYS2	Gene names	Hoxd9, Hox-4.4, Hoxd-9
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4.4) (Hox-5.2).

IPF1_HUMAN
θ value	θ > 10 (rank : 411)	NC score	0.166086 (rank : 247)
Query Neighborhood Hits	334	Target Neighborhood Hits	330	Shared Neighborhood Hits	199
SwissProt Accessions	P52945, O60594	Gene names	IPF1, PDX1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Pancreas/duodenum homeobox 1) (PDX- 1) (Islet/duodenum homeobox-1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Insulin upstream factor 1) (IUF-1) (Glucose- sensitive factor) (GSF).

IPF1_MOUSE
θ value	θ > 10 (rank : 412)	NC score	0.166098 (rank : 246)
Query Neighborhood Hits	334	Target Neighborhood Hits	340	Shared Neighborhood Hits	200
SwissProt Accessions	P52946	Gene names	Ipf1, Pdx1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Islet/duodenum homeobox 1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Pancreas/duodenum homeobox 1).

LBX1_HUMAN
θ value	θ > 10 (rank : 413)	NC score	0.203853 (rank : 145)
Query Neighborhood Hits	334	Target Neighborhood Hits	357	Shared Neighborhood Hits	206
SwissProt Accessions	P52954	Gene names	LBX1
Domain Architecture
Description	Transcription factor LBX1.

LBX1_MOUSE
θ value	θ > 10 (rank : 414)	NC score	0.202797 (rank : 150)
Query Neighborhood Hits	334	Target Neighborhood Hits	349	Shared Neighborhood Hits	204
SwissProt Accessions	P52955	Gene names	Lbx1, Lbx1h
Domain Architecture
Description	Transcription factor LBX1.

LMO3_HUMAN
θ value	θ > 10 (rank : 415)	NC score	0.069294 (rank : 360)
Query Neighborhood Hits	334	Target Neighborhood Hits	111	Shared Neighborhood Hits	22
SwissProt Accessions	Q8TAP4, Q8N974, Q9UDD5	Gene names	LMO3, RBTN3, RHOM3
Domain Architecture
Description	LIM-only protein 3 (Neuronal-specific transcription factor DAT1) (Rhombotin-3).

LMO3_MOUSE
θ value	θ > 10 (rank : 416)	NC score	0.069294 (rank : 361)
Query Neighborhood Hits	334	Target Neighborhood Hits	111	Shared Neighborhood Hits	22
SwissProt Accessions	Q8BZL8	Gene names	Lmo3
Domain Architecture
Description	LIM-only protein 3 (Neuronal-specific transcription factor DAT1).

LMO4_HUMAN
θ value	θ > 10 (rank : 417)	NC score	0.071886 (rank : 354)
Query Neighborhood Hits	334	Target Neighborhood Hits	111	Shared Neighborhood Hits	22
SwissProt Accessions	P61968, O00158, O88894	Gene names	LMO4
Domain Architecture
Description	LIM domain transcription factor LMO4 (LIM domain only protein 4) (LMO- 4) (Breast tumor autoantigen).

LMO4_MOUSE
θ value	θ > 10 (rank : 418)	NC score	0.071886 (rank : 355)
Query Neighborhood Hits	334	Target Neighborhood Hits	111	Shared Neighborhood Hits	22
SwissProt Accessions	P61969, O00158, O88894	Gene names	Lmo4
Domain Architecture
Description	LIM domain transcription factor LMO4 (LIM domain only protein 4) (LMO- 4) (Breast tumor autoantigen).

LMX1B_HUMAN
θ value	θ > 10 (rank : 419)	NC score	0.184418 (rank : 187)
Query Neighborhood Hits	334	Target Neighborhood Hits	404	Shared Neighborhood Hits	188
SwissProt Accessions	O60663, O75463	Gene names	LMX1B
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

LMX1B_MOUSE
θ value	θ > 10 (rank : 420)	NC score	0.186672 (rank : 178)
Query Neighborhood Hits	334	Target Neighborhood Hits	394	Shared Neighborhood Hits	189
SwissProt Accessions	O88609	Gene names	Lmx1b
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

MEIS1_HUMAN
θ value	θ > 10 (rank : 421)	NC score	0.076979 (rank : 349)
Query Neighborhood Hits	334	Target Neighborhood Hits	115	Shared Neighborhood Hits	88
SwissProt Accessions	O00470	Gene names	MEIS1
Domain Architecture
Description	Homeobox protein Meis1.

MEIS1_MOUSE
θ value	θ > 10 (rank : 422)	NC score	0.076985 (rank : 348)
Query Neighborhood Hits	334	Target Neighborhood Hits	115	Shared Neighborhood Hits	88
SwissProt Accessions	Q60954, Q5SVC8, Q60955, Q8CIL0	Gene names	Meis1
Domain Architecture
Description	Homeobox protein Meis1 (Myeloid ecotropic viral integration site 1).

MEIS2_HUMAN
θ value	θ > 10 (rank : 423)	NC score	0.079982 (rank : 344)
Query Neighborhood Hits	334	Target Neighborhood Hits	182	Shared Neighborhood Hits	95
SwissProt Accessions	O14770, Q96KI4, Q96KI5, Q9NRS1, Q9NRS2, Q9NRS3	Gene names	MEIS2, MRG1
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

MEIS2_MOUSE
θ value	θ > 10 (rank : 424)	NC score	0.079293 (rank : 345)
Query Neighborhood Hits	334	Target Neighborhood Hits	208	Shared Neighborhood Hits	95
SwissProt Accessions	P97367, O35676, O35677, P97403, P97404	Gene names	Meis2, Mrg1, Stra10
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

MEIS3_HUMAN
θ value	θ > 10 (rank : 425)	NC score	0.077284 (rank : 347)
Query Neighborhood Hits	334	Target Neighborhood Hits	118	Shared Neighborhood Hits	85
SwissProt Accessions	Q99687, Q6NT73, Q8TC66, Q9NPW2	Gene names	MEIS3, MRG2
Domain Architecture	No domain graphic available
Description	Homeobox protein Meis3 (Meis1-related protein 2).

MEIS3_MOUSE
θ value	θ > 10 (rank : 426)	NC score	0.075390 (rank : 350)
Query Neighborhood Hits	334	Target Neighborhood Hits	118	Shared Neighborhood Hits	82
SwissProt Accessions	P97368, Q99L81	Gene names	Meis3, Mrg2
Domain Architecture
Description	Homeobox protein Meis3 (Meis1-related protein 2).

MSX1_HUMAN
θ value	θ > 10 (rank : 427)	NC score	0.178805 (rank : 213)
Query Neighborhood Hits	334	Target Neighborhood Hits	374	Shared Neighborhood Hits	200
SwissProt Accessions	P28360, Q96NY4	Gene names	MSX1, HOX7
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7).

MSX1_MOUSE
θ value	θ > 10 (rank : 428)	NC score	0.178931 (rank : 212)
Query Neighborhood Hits	334	Target Neighborhood Hits	322	Shared Neighborhood Hits	198
SwissProt Accessions	P13297	Gene names	Msx1, Hox7, Hox7.1
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7) (Hox- 7.1).

MSX2_HUMAN
θ value	θ > 10 (rank : 429)	NC score	0.182880 (rank : 191)
Query Neighborhood Hits	334	Target Neighborhood Hits	337	Shared Neighborhood Hits	202
SwissProt Accessions	P35548	Gene names	MSX2, HOX8
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8).

MSX2_MOUSE
θ value	θ > 10 (rank : 430)	NC score	0.181575 (rank : 195)
Query Neighborhood Hits	334	Target Neighborhood Hits	345	Shared Neighborhood Hits	200
SwissProt Accessions	Q03358, Q63856	Gene names	Msx2, Hox-8.1, Msx-2
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8.1).

NKX23_MOUSE
θ value	θ > 10 (rank : 431)	NC score	0.199256 (rank : 155)
Query Neighborhood Hits	334	Target Neighborhood Hits	340	Shared Neighborhood Hits	205
SwissProt Accessions	P97334, Q9QZ60, Q9WV67	Gene names	Nkx2-3, Nkx-2.3, Nkx2c
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NK-2 homolog C) (Nkx2-C) (Homeobox protein NK-2 homolog 3).

NKX24_HUMAN
θ value	θ > 10 (rank : 432)	NC score	0.180775 (rank : 202)
Query Neighborhood Hits	334	Target Neighborhood Hits	366	Shared Neighborhood Hits	203
SwissProt Accessions	Q9H2Z4	Gene names	NKX2-4, NKX2D
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

NKX24_MOUSE
θ value	θ > 10 (rank : 433)	NC score	0.183237 (rank : 190)
Query Neighborhood Hits	334	Target Neighborhood Hits	356	Shared Neighborhood Hits	202
SwissProt Accessions	Q9EQM3, Q9EQM4	Gene names	Nkx2-4, Nkx2d
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

NKX26_MOUSE
θ value	θ > 10 (rank : 434)	NC score	0.186154 (rank : 181)
Query Neighborhood Hits	334	Target Neighborhood Hits	343	Shared Neighborhood Hits	201
SwissProt Accessions	P43688	Gene names	Nkx2-6, Nkx-2.6, Nkx2f
Domain Architecture
Description	Homeobox protein Nkx-2.6 (Homeobox protein NK-2 homolog F).

NKX31_HUMAN
θ value	θ > 10 (rank : 435)	NC score	0.186939 (rank : 177)
Query Neighborhood Hits	334	Target Neighborhood Hits	331	Shared Neighborhood Hits	197
SwissProt Accessions	Q99801, O15465, Q9H2P4, Q9H2P5, Q9H2P6, Q9H2P7, Q9HBG0	Gene names	NKX3-1, NKX3.1, NKX3A
Domain Architecture
Description	Homeobox protein Nkx-3.1.

NKX31_MOUSE
θ value	θ > 10 (rank : 436)	NC score	0.188113 (rank : 175)
Query Neighborhood Hits	334	Target Neighborhood Hits	379	Shared Neighborhood Hits	198
SwissProt Accessions	P97436, O09087	Gene names	Nkx3-1, Nkx-3.1, Nkx3a
Domain Architecture
Description	Homeobox protein Nkx-3.1.

OTX1_HUMAN
θ value	θ > 10 (rank : 437)	NC score	0.218996 (rank : 82)
Query Neighborhood Hits	334	Target Neighborhood Hits	379	Shared Neighborhood Hits	204
SwissProt Accessions	P32242, Q53TG6	Gene names	OTX1
Domain Architecture
Description	Homeobox protein OTX1.

OTX1_MOUSE
θ value	θ > 10 (rank : 438)	NC score	0.213496 (rank : 93)
Query Neighborhood Hits	334	Target Neighborhood Hits	372	Shared Neighborhood Hits	206
SwissProt Accessions	P80205	Gene names	Otx1, Otx-1
Domain Architecture
Description	Homeobox protein OTX1.

OTX2_HUMAN
θ value	θ > 10 (rank : 439)	NC score	0.207047 (rank : 131)
Query Neighborhood Hits	334	Target Neighborhood Hits	341	Shared Neighborhood Hits	198
SwissProt Accessions	P32243, Q6GTV3, Q9HAW3, Q9P2R1	Gene names	OTX2
Domain Architecture
Description	Homeobox protein OTX2.

OTX2_MOUSE
θ value	θ > 10 (rank : 440)	NC score	0.210143 (rank : 103)
Query Neighborhood Hits	334	Target Neighborhood Hits	345	Shared Neighborhood Hits	201
SwissProt Accessions	P80206	Gene names	Otx2, Otx-2
Domain Architecture
Description	Homeobox protein OTX2.

PAX1_HUMAN
θ value	θ > 10 (rank : 441)	NC score	0.051281 (rank : 390)
Query Neighborhood Hits	334	Target Neighborhood Hits	72	Shared Neighborhood Hits	11
SwissProt Accessions	P15863, Q642X9, Q6NTC0, Q9Y558	Gene names	PAX1, HUP48
Domain Architecture
Description	Paired box protein Pax-1 (HUP48).

PAX1_MOUSE
θ value	θ > 10 (rank : 442)	NC score	0.052065 (rank : 389)
Query Neighborhood Hits	334	Target Neighborhood Hits	69	Shared Neighborhood Hits	11
SwissProt Accessions	P09084, Q9R2B1	Gene names	Pax1, Pax-1
Domain Architecture
Description	Paired box protein Pax-1.

PAX2_HUMAN
θ value	θ > 10 (rank : 443)	NC score	0.060638 (rank : 376)
Query Neighborhood Hits	334	Target Neighborhood Hits	84	Shared Neighborhood Hits	41
SwissProt Accessions	Q02962, Q15105, Q15110, Q15837	Gene names	PAX2
Domain Architecture
Description	Paired box protein Pax-2.

PAX2_MOUSE
θ value	θ > 10 (rank : 444)	NC score	0.061013 (rank : 375)
Query Neighborhood Hits	334	Target Neighborhood Hits	86	Shared Neighborhood Hits	42
SwissProt Accessions	P32114	Gene names	Pax2, Pax-2
Domain Architecture
Description	Paired box protein Pax-2.

PAX5_HUMAN
θ value	θ > 10 (rank : 445)	NC score	0.056656 (rank : 380)
Query Neighborhood Hits	334	Target Neighborhood Hits	106	Shared Neighborhood Hits	36
SwissProt Accessions	Q02548, O75933	Gene names	PAX5
Domain Architecture
Description	Paired box protein Pax-5 (B-cell-specific transcription factor) (BSAP).

PAX5_MOUSE
θ value	θ > 10 (rank : 446)	NC score	0.056715 (rank : 379)
Query Neighborhood Hits	334	Target Neighborhood Hits	106	Shared Neighborhood Hits	36
SwissProt Accessions	Q02650	Gene names	Pax5, Pax-5
Domain Architecture
Description	Paired box protein Pax-5 (B-cell-specific transcription factor) (BSAP).

PAX8_HUMAN
θ value	θ > 10 (rank : 447)	NC score	0.053782 (rank : 386)
Query Neighborhood Hits	334	Target Neighborhood Hits	56	Shared Neighborhood Hits	18
SwissProt Accessions	Q06710, Q09155, Q16337, Q16338, Q16339, Q96J49	Gene names	PAX8
Domain Architecture
Description	Paired box protein Pax-8.

PAX8_MOUSE
θ value	θ > 10 (rank : 448)	NC score	0.055524 (rank : 381)
Query Neighborhood Hits	334	Target Neighborhood Hits	62	Shared Neighborhood Hits	23
SwissProt Accessions	Q00288, P97342	Gene names	Pax8, Pax-8
Domain Architecture
Description	Paired box protein Pax-8.

PAX9_HUMAN
θ value	θ > 10 (rank : 449)	NC score	0.054481 (rank : 383)
Query Neighborhood Hits	334	Target Neighborhood Hits	92	Shared Neighborhood Hits	19
SwissProt Accessions	P55771, Q99582, Q9UQR4	Gene names	PAX9
Domain Architecture
Description	Paired box protein Pax-9.

PAX9_MOUSE
θ value	θ > 10 (rank : 450)	NC score	0.053547 (rank : 387)
Query Neighborhood Hits	334	Target Neighborhood Hits	67	Shared Neighborhood Hits	11
SwissProt Accessions	P47242	Gene names	Pax9, Pax-9
Domain Architecture
Description	Paired box protein Pax-9.

PHX2A_HUMAN
θ value	θ > 10 (rank : 451)	NC score	0.210630 (rank : 102)
Query Neighborhood Hits	334	Target Neighborhood Hits	345	Shared Neighborhood Hits	203
SwissProt Accessions	O14813, Q8IVZ2	Gene names	PHOX2A, ARIX, PMX2A
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (Aristaless homeobox protein homolog) (ARIX1 homeodomain protein).

PHX2A_MOUSE
θ value	θ > 10 (rank : 452)	NC score	0.211074 (rank : 101)
Query Neighborhood Hits	334	Target Neighborhood Hits	338	Shared Neighborhood Hits	202
SwissProt Accessions	Q62066	Gene names	Phox2a, Arix, Phox2, Pmx2, Pmx2a
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (PHOX2A homeodomain protein) (Aristaless homeobox protein homolog).

PHX2B_HUMAN
θ value	θ > 10 (rank : 453)	NC score	0.213352 (rank : 95)
Query Neighborhood Hits	334	Target Neighborhood Hits	407	Shared Neighborhood Hits	203
SwissProt Accessions	Q99453, Q6PJD9	Gene names	PHOX2B, PMX2B
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

PHX2B_MOUSE
θ value	θ > 10 (rank : 454)	NC score	0.213352 (rank : 96)
Query Neighborhood Hits	334	Target Neighborhood Hits	407	Shared Neighborhood Hits	203
SwissProt Accessions	O35690	Gene names	Phox2b, Pmx2b
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

PIT1_HUMAN
θ value	θ > 10 (rank : 455)	NC score	0.120875 (rank : 314)
Query Neighborhood Hits	334	Target Neighborhood Hits	292	Shared Neighborhood Hits	176
SwissProt Accessions	P28069, O75757, Q15132, Q15133, Q9UEL3	Gene names	POU1F1, GHF1, PIT1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

PIT1_MOUSE
θ value	θ > 10 (rank : 456)	NC score	0.122884 (rank : 313)
Query Neighborhood Hits	334	Target Neighborhood Hits	313	Shared Neighborhood Hits	184
SwissProt Accessions	Q00286	Gene names	Pou1f1, Pit-1, Pit1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

PKNX2_HUMAN
θ value	θ > 10 (rank : 457)	NC score	0.070923 (rank : 356)
Query Neighborhood Hits	334	Target Neighborhood Hits	133	Shared Neighborhood Hits	66
SwissProt Accessions	Q96KN3, Q63HL6, Q86XD1	Gene names	PKNOX2, PREP2
Domain Architecture
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

PKNX2_MOUSE
θ value	θ > 10 (rank : 458)	NC score	0.075055 (rank : 351)
Query Neighborhood Hits	334	Target Neighborhood Hits	197	Shared Neighborhood Hits	72
SwissProt Accessions	Q8BG99, Q8R4B0	Gene names	Pknox2, Prep2
Domain Architecture	No domain graphic available
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

PO2F3_HUMAN
θ value	θ > 10 (rank : 459)	NC score	0.128927 (rank : 312)
Query Neighborhood Hits	334	Target Neighborhood Hits	319	Shared Neighborhood Hits	184
SwissProt Accessions	Q9UKI9, Q9UKR7, Q9Y504	Gene names	POU2F3, OTF11, PLA1
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Transcription factor Skn-1) (PLA-1 protein).

PO2F3_MOUSE
θ value	θ > 10 (rank : 460)	NC score	0.130505 (rank : 311)
Query Neighborhood Hits	334	Target Neighborhood Hits	328	Shared Neighborhood Hits	186
SwissProt Accessions	P31362	Gene names	Pou2f3, Epoc1, Oct11, Otf-11, Otf11
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Epoc-1).

PO3F1_HUMAN
θ value	θ > 10 (rank : 461)	NC score	0.106072 (rank : 330)
Query Neighborhood Hits	334	Target Neighborhood Hits	256	Shared Neighborhood Hits	163
SwissProt Accessions	Q03052	Gene names	POU3F1, OCT6, OTF6
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

PO3F1_MOUSE
θ value	θ > 10 (rank : 462)	NC score	0.107615 (rank : 329)
Query Neighborhood Hits	334	Target Neighborhood Hits	261	Shared Neighborhood Hits	164
SwissProt Accessions	P21952	Gene names	Pou3f1, Oct6, Otf-6, Otf6, Scip
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

PO3F4_HUMAN
θ value	θ > 10 (rank : 463)	NC score	0.090689 (rank : 339)
Query Neighborhood Hits	334	Target Neighborhood Hits	297	Shared Neighborhood Hits	169
SwissProt Accessions	P49335, Q5H9G9, Q99410	Gene names	POU3F4, BRN4, OTF9
Domain Architecture
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

PO3F4_MOUSE
θ value	θ > 10 (rank : 464)	NC score	0.091098 (rank : 338)
Query Neighborhood Hits	334	Target Neighborhood Hits	281	Shared Neighborhood Hits	169
SwissProt Accessions	P62515, P25216	Gene names	Pou3f4, Brn-4, Brn4, Otf9
Domain Architecture	No domain graphic available
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

PO4F1_HUMAN
θ value	θ > 10 (rank : 465)	NC score	0.107981 (rank : 328)
Query Neighborhood Hits	334	Target Neighborhood Hits	342	Shared Neighborhood Hits	178
SwissProt Accessions	Q01851, Q14986, Q15318	Gene names	POU4F1, BRN3A, RDC1
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Oct-T1) (Homeobox/POU domain protein RDC-1).

PO4F1_MOUSE
θ value	θ > 10 (rank : 466)	NC score	0.109176 (rank : 327)
Query Neighborhood Hits	334	Target Neighborhood Hits	345	Shared Neighborhood Hits	178
SwissProt Accessions	P17208	Gene names	Pou4f1, Brn-3, Brn3, Brn3a
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Brn-3.0).

PO4F2_HUMAN
θ value	θ > 10 (rank : 467)	NC score	0.105579 (rank : 332)
Query Neighborhood Hits	334	Target Neighborhood Hits	310	Shared Neighborhood Hits	176
SwissProt Accessions	Q12837, Q13883, Q14987	Gene names	POU4F2, BRN3B
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B).

PO4F2_MOUSE
θ value	θ > 10 (rank : 468)	NC score	0.105831 (rank : 331)
Query Neighborhood Hits	334	Target Neighborhood Hits	312	Shared Neighborhood Hits	176
SwissProt Accessions	Q63934, Q63954	Gene names	Pou4f2, Brn3b
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B) (Brn-3.2).

PO4F3_HUMAN
θ value	θ > 10 (rank : 469)	NC score	0.103942 (rank : 333)
Query Neighborhood Hits	334	Target Neighborhood Hits	307	Shared Neighborhood Hits	174
SwissProt Accessions	Q15319, O60557	Gene names	POU4F3, BRN3C
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

PO4F3_MOUSE
θ value	θ > 10 (rank : 470)	NC score	0.103894 (rank : 334)
Query Neighborhood Hits	334	Target Neighborhood Hits	311	Shared Neighborhood Hits	174
SwissProt Accessions	Q63955	Gene names	Pou4f3, Brn-3c, Brn3c
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

PO5FL_HUMAN
θ value	θ > 10 (rank : 471)	NC score	0.069139 (rank : 362)
Query Neighborhood Hits	334	Target Neighborhood Hits	214	Shared Neighborhood Hits	125
SwissProt Accessions	Q06416, Q9BZV9	Gene names	POU5F1P1, OTF3C, POU5FLC8
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 1 (Octamer- binding protein 3-like).

PO5FM_HUMAN
θ value	θ > 10 (rank : 472)	NC score	0.069013 (rank : 363)
Query Neighborhood Hits	334	Target Neighborhood Hits	212	Shared Neighborhood Hits	128
SwissProt Accessions	Q9BZV7	Gene names	POU5F1P1, POU5FLC20
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 2.

PO5FN_HUMAN
θ value	θ > 10 (rank : 473)	NC score	0.060115 (rank : 377)
Query Neighborhood Hits	334	Target Neighborhood Hits	134	Shared Neighborhood Hits	82
SwissProt Accessions	Q9BZW0	Gene names	POU5FLC1
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 3.

PRRX1_HUMAN
θ value	θ > 10 (rank : 474)	NC score	0.214070 (rank : 91)
Query Neighborhood Hits	334	Target Neighborhood Hits	347	Shared Neighborhood Hits	204
SwissProt Accessions	P54821, O60807	Gene names	PRRX1, PMX1
Domain Architecture
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein PHOX1).

PRRX1_MOUSE
θ value	θ > 10 (rank : 475)	NC score	0.214080 (rank : 90)
Query Neighborhood Hits	334	Target Neighborhood Hits	346	Shared Neighborhood Hits	204
SwissProt Accessions	P63013, P43271, Q02810	Gene names	Prrx1, Pmx, Pmx1
Domain Architecture	No domain graphic available
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein mHox) (Homeobox protein K-2).

PRRX2_HUMAN
θ value	θ > 10 (rank : 476)	NC score	0.217426 (rank : 84)
Query Neighborhood Hits	334	Target Neighborhood Hits	348	Shared Neighborhood Hits	204
SwissProt Accessions	Q99811, Q9UIB3	Gene names	PRRX2, PMX2, PRX2
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Paired-related homeobox protein 2).

RBTN1_HUMAN
θ value	θ > 10 (rank : 477)	NC score	0.069467 (rank : 359)
Query Neighborhood Hits	334	Target Neighborhood Hits	110	Shared Neighborhood Hits	22
SwissProt Accessions	P25800, Q4VBC5	Gene names	LMO1, RBTN1, RHOM1, TTG1
Domain Architecture
Description	Rhombotin-1 (Cysteine-rich protein TTG-1) (T-cell translocation protein 1) (LIM-only protein 1).

RBTN1_MOUSE
θ value	θ > 10 (rank : 478)	NC score	0.069501 (rank : 358)
Query Neighborhood Hits	334	Target Neighborhood Hits	109	Shared Neighborhood Hits	22
SwissProt Accessions	Q924W9	Gene names	Lmo1, Rbtn1, Rhom1, Ttg1
Domain Architecture	No domain graphic available
Description	Rhombotin-1 (Cysteine-rich protein TTG-1) (LIM-only protein 1).

RBTN2_HUMAN
θ value	θ > 10 (rank : 479)	NC score	0.066893 (rank : 367)
Query Neighborhood Hits	334	Target Neighborhood Hits	114	Shared Neighborhood Hits	22
SwissProt Accessions	P25791, Q9HD58	Gene names	LMO2, RBTN2, RHOM2, TTG2
Domain Architecture
Description	Rhombotin-2 (Cysteine-rich protein TTG-2) (T-cell translocation protein 2) (LIM-only protein 2).

RBTN2_MOUSE
θ value	θ > 10 (rank : 480)	NC score	0.066895 (rank : 366)
Query Neighborhood Hits	334	Target Neighborhood Hits	114	Shared Neighborhood Hits	22
SwissProt Accessions	P25801	Gene names	Lmo2, Rbtn-2, Rbtn2, Rhom-2
Domain Architecture
Description	Rhombotin-2 (Cysteine-rich protein TTG-2) (T-cell translocation protein 2) (LIM-only protein 2).

RHOX5_MOUSE
θ value	θ > 10 (rank : 481)	NC score	0.068024 (rank : 364)
Query Neighborhood Hits	334	Target Neighborhood Hits	69	Shared Neighborhood Hits	39
SwissProt Accessions	P52651	Gene names	Rhox5, Pem
Domain Architecture	No domain graphic available
Description	Homeobox protein Rhox5 (Reproductive homeobox on chromosome X 5) (Homeobox protein Pem) (Placenta and embryonic expression protein).

SATB1_HUMAN
θ value	θ > 10 (rank : 482)	NC score	0.050578 (rank : 391)
Query Neighborhood Hits	334	Target Neighborhood Hits	130	Shared Neighborhood Hits	42
SwissProt Accessions	Q01826	Gene names	SATB1
Domain Architecture
Description	DNA-binding protein SATB1 (Special AT-rich sequence-binding protein 1).

SATB1_MOUSE
θ value	θ > 10 (rank : 483)	NC score	0.053976 (rank : 385)
Query Neighborhood Hits	334	Target Neighborhood Hits	130	Shared Neighborhood Hits	47
SwissProt Accessions	Q60611	Gene names	Satb1
Domain Architecture
Description	DNA-binding protein SATB1 (Special AT-rich sequence-binding protein 1).

TF2LX_HUMAN
θ value	θ > 10 (rank : 484)	NC score	0.120094 (rank : 316)
Query Neighborhood Hits	334	Target Neighborhood Hits	108	Shared Neighborhood Hits	59
SwissProt Accessions	Q8IUE1	Gene names	TGIF2LX, TGIFLX
Domain Architecture
Description	Homeobox protein TGIF2LX (TGFB-induced factor 2-like protein, X- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the X).

TF2LY_HUMAN
θ value	θ > 10 (rank : 485)	NC score	0.109759 (rank : 326)
Query Neighborhood Hits	334	Target Neighborhood Hits	90	Shared Neighborhood Hits	54
SwissProt Accessions	Q8IUE0	Gene names	TGIF2LY, TGIFLY
Domain Architecture
Description	Homeobox protein TGIF2LY (TGFB-induced factor 2-like protein, Y- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the Y).

TGIF2_HUMAN
θ value	θ > 10 (rank : 486)	NC score	0.078791 (rank : 346)
Query Neighborhood Hits	334	Target Neighborhood Hits	94	Shared Neighborhood Hits	49
SwissProt Accessions	Q9GZN2	Gene names	TGIF2
Domain Architecture
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

TGIF2_MOUSE
θ value	θ > 10 (rank : 487)	NC score	0.080891 (rank : 342)
Query Neighborhood Hits	334	Target Neighborhood Hits	127	Shared Neighborhood Hits	59
SwissProt Accessions	Q8C0Y1	Gene names	Tgif2
Domain Architecture	No domain graphic available
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

TGIF_HUMAN
θ value	θ > 10 (rank : 488)	NC score	0.064833 (rank : 372)
Query Neighborhood Hits	334	Target Neighborhood Hits	109	Shared Neighborhood Hits	46
SwissProt Accessions	Q15583, Q6ICR0, Q8N5X9, Q9NRS0	Gene names	TGIF
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

TGIF_MOUSE
θ value	θ > 10 (rank : 489)	NC score	0.067376 (rank : 365)
Query Neighborhood Hits	334	Target Neighborhood Hits	125	Shared Neighborhood Hits	49
SwissProt Accessions	P70284, Q921F9, Q99JS3	Gene names	Tgif
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

TIMD1_HUMAN
θ value	θ > 10 (rank : 490)	NC score	0.052810 (rank : 388)
Query Neighborhood Hits	334	Target Neighborhood Hits	155	Shared Neighborhood Hits	12
SwissProt Accessions	Q96D42, O43656	Gene names	HAVCR1, TIM1, TIMD1
Domain Architecture	No domain graphic available
Description	Hepatitis A virus cellular receptor 1 precursor (HAVcr-1) (T cell immunoglobulin and mucin domain-containing protein 1) (TIMD-1) (T cell membrane protein 1) (TIM-1) (TIM).

TITF1_HUMAN
θ value	θ > 10 (rank : 491)	NC score	0.182650 (rank : 192)
Query Neighborhood Hits	334	Target Neighborhood Hits	332	Shared Neighborhood Hits	203
SwissProt Accessions	P43699, O14954, O14955, Q9BRJ8	Gene names	TITF1, NKX2-1, NKX2A, TTF1
Domain Architecture
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1) (Homeobox protein NK-2 homolog A).

TITF1_MOUSE
θ value	θ > 10 (rank : 492)	NC score	0.182558 (rank : 193)
Query Neighborhood Hits	334	Target Neighborhood Hits	335	Shared Neighborhood Hits	203
SwissProt Accessions	P50220	Gene names	Titf1, Nkx-2.1, Nkx2-1, Ttf1
Domain Architecture	No domain graphic available
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1).

TLX1_MOUSE
θ value	θ > 10 (rank : 493)	NC score	0.176703 (rank : 221)
Query Neighborhood Hits	334	Target Neighborhood Hits	347	Shared Neighborhood Hits	205
SwissProt Accessions	P43345	Gene names	Tlx1, Hox11, Tlx-1
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (Homeobox TLX-1).

TLX2_HUMAN
θ value	θ > 10 (rank : 494)	NC score	0.177996 (rank : 215)
Query Neighborhood Hits	334	Target Neighborhood Hits	352	Shared Neighborhood Hits	204
SwissProt Accessions	O43763, Q9UQ48	Gene names	TLX2, HOX11L1, NCX
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Neural crest homeobox protein).

TLX2_MOUSE
θ value	θ > 10 (rank : 495)	NC score	0.177981 (rank : 216)
Query Neighborhood Hits	334	Target Neighborhood Hits	336	Shared Neighborhood Hits	201
SwissProt Accessions	Q61663	Gene names	Tlx2, Hox11l1, Tlx1l1
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Homeobox TLX-2) (PMUR10F).

TLX3_HUMAN
θ value	θ > 10 (rank : 496)	NC score	0.168148 (rank : 242)
Query Neighborhood Hits	334	Target Neighborhood Hits	403	Shared Neighborhood Hits	206
SwissProt Accessions	O43711, Q96AD3	Gene names	TLX3, HOX11L2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox protein Hox-11L2).

TLX3_MOUSE
θ value	θ > 10 (rank : 497)	NC score	0.174138 (rank : 225)
Query Neighborhood Hits	334	Target Neighborhood Hits	346	Shared Neighborhood Hits	206
SwissProt Accessions	O55144	Gene names	Tlx3, Hox11l2, Rnx, Tlx1l2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox TLX-3) (Homeobox protein Hox-11L2) (Respiratory neuron homeobox protein).

ZCH10_HUMAN
θ value	θ > 10 (rank : 498)	NC score	0.062786 (rank : 374)
Query Neighborhood Hits	334	Target Neighborhood Hits	123	Shared Neighborhood Hits	8
SwissProt Accessions	Q8TBK6, Q9NXR4	Gene names	ZCCHC10
Domain Architecture	No domain graphic available
Description	Zinc finger CCHC domain-containing protein 10.

ZN409_HUMAN
θ value	θ > 10 (rank : 499)	NC score	0.065573 (rank : 371)
Query Neighborhood Hits	334	Target Neighborhood Hits	842	Shared Neighborhood Hits	57
SwissProt Accessions	Q9UPU6	Gene names	ZNF409, KIAA1056
Domain Architecture	No domain graphic available
Description	Zinc finger protein 409.

Hits sorted by NC score

ZHX1_MOUSE
NC score	0.999962 (rank : 1)	θ value	0 (rank : 2)
Query Neighborhood Hits	334	Target Neighborhood Hits	334	Shared Neighborhood Hits	334
SwissProt Accessions	P70121, Q8BQ68, Q8C6T4, Q8CJG3	Gene names	Zhx1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

ZHX1_HUMAN
NC score	0.986495 (rank : 2)	θ value	0 (rank : 1)
Query Neighborhood Hits	334	Target Neighborhood Hits	307	Shared Neighborhood Hits	267
SwissProt Accessions	Q9UKY1, Q8IWD8	Gene names	ZHX1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

ZHX2_HUMAN
NC score	0.915390 (rank : 3)	θ value	2.19465e-147 (rank : 3)
Query Neighborhood Hits	334	Target Neighborhood Hits	347	Shared Neighborhood Hits	186
SwissProt Accessions	Q9Y6X8	Gene names	ZHX2, AFR1, KIAA0854, RAF
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

ZHX3_HUMAN
NC score	0.908777 (rank : 4)	θ value	2.61056e-124 (rank : 5)
Query Neighborhood Hits	334	Target Neighborhood Hits	331	Shared Neighborhood Hits	188
SwissProt Accessions	Q9H4I2, O43145	Gene names	ZHX3, KIAA0395, TIX1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

ZHX3_MOUSE
NC score	0.906768 (rank : 5)	θ value	5.82922e-116 (rank : 6)
Query Neighborhood Hits	334	Target Neighborhood Hits	321	Shared Neighborhood Hits	183
SwissProt Accessions	Q8C0Q2, Q80U14	Gene names	Zhx3, Kiaa0395, Tix1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

ZHX2_MOUSE
NC score	0.905302 (rank : 6)	θ value	3.16907e-146 (rank : 4)
Query Neighborhood Hits	334	Target Neighborhood Hits	435	Shared Neighborhood Hits	188
SwissProt Accessions	Q8C0C0	Gene names	Zhx2, Afr1, Raf
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

HOMEZ_HUMAN
NC score	0.590163 (rank : 7)	θ value	2.20605e-14 (rank : 8)
Query Neighborhood Hits	334	Target Neighborhood Hits	110	Shared Neighborhood Hits	47
SwissProt Accessions	Q8IX15, Q6P049, Q86XB6, Q9P2A5	Gene names	HOMEZ, KIAA1443
Domain Architecture
Description	Homeobox and leucine zipper protein Homez (Homeodomain leucine zipper- containing factor).

HOMEZ_MOUSE
NC score	0.582713 (rank : 8)	θ value	8.10077e-17 (rank : 7)
Query Neighborhood Hits	334	Target Neighborhood Hits	61	Shared Neighborhood Hits	19
SwissProt Accessions	Q80W88	Gene names	Homez, Kiaa1443
Domain Architecture
Description	Homeobox and leucine zipper protein Homez (Homeodomain leucine zipper- containing factor).

PROP1_HUMAN
NC score	0.282363 (rank : 9)	θ value	0.0431538 (rank : 42)
Query Neighborhood Hits	334	Target Neighborhood Hits	354	Shared Neighborhood Hits	209
SwissProt Accessions	O75360	Gene names	PROP1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

PROP1_MOUSE
NC score	0.275001 (rank : 10)	θ value	0.0431538 (rank : 43)
Query Neighborhood Hits	334	Target Neighborhood Hits	361	Shared Neighborhood Hits	207
SwissProt Accessions	P97458	Gene names	Prop1, Prop-1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

PITX3_HUMAN
NC score	0.263829 (rank : 11)	θ value	0.00134147 (rank : 12)
Query Neighborhood Hits	334	Target Neighborhood Hits	366	Shared Neighborhood Hits	215
SwissProt Accessions	O75364	Gene names	PITX3, PTX3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

PITX3_MOUSE
NC score	0.262448 (rank : 12)	θ value	0.00390308 (rank : 13)
Query Neighborhood Hits	334	Target Neighborhood Hits	380	Shared Neighborhood Hits	216
SwissProt Accessions	O35160	Gene names	Pitx3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

PITX2_HUMAN
NC score	0.262343 (rank : 13)	θ value	0.0252991 (rank : 28)
Query Neighborhood Hits	334	Target Neighborhood Hits	381	Shared Neighborhood Hits	214
SwissProt Accessions	Q99697, O60578, O60579, O60580, Q9BY17	Gene names	PITX2, ARP1, RGS, RIEG, RIEG1
Domain Architecture
Description	Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription factor) (Solurshin) (ALL1-responsive protein ARP1).

PITX2_MOUSE
NC score	0.262295 (rank : 14)	θ value	0.0252991 (rank : 29)
Query Neighborhood Hits	334	Target Neighborhood Hits	383	Shared Neighborhood Hits	214
SwissProt Accessions	P97474, O08646, O70336, P97933, Q9JLA0, Q9QXB8, Q9R1V9, Q9Z141	Gene names	Pitx2, Arp1, Brx1, Otlx2, Ptx2, Rgs
Domain Architecture
Description	Pituitary homeobox 2 (Orthodenticle-like homeobox 2) (Solurshin) (ALL1-responsive protein ARP1) (BRX1 homeoprotein) (Paired-like homeodomain transcription factor Munc 30).

PITX1_HUMAN
NC score	0.260846 (rank : 15)	θ value	0.0193708 (rank : 24)
Query Neighborhood Hits	334	Target Neighborhood Hits	353	Shared Neighborhood Hits	215
SwissProt Accessions	P78337, O14677, O60425, Q9BTI5	Gene names	PITX1, BFT, PTX1
Domain Architecture
Description	Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot).

GSCL_MOUSE
NC score	0.260157 (rank : 16)	θ value	0.813845 (rank : 124)
Query Neighborhood Hits	334	Target Neighborhood Hits	339	Shared Neighborhood Hits	202
SwissProt Accessions	P56916	Gene names	Gscl
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid-like (GSC-2).

PITX1_MOUSE
NC score	0.259625 (rank : 17)	θ value	0.0193708 (rank : 25)
Query Neighborhood Hits	334	Target Neighborhood Hits	362	Shared Neighborhood Hits	214
SwissProt Accessions	P70314, O54742, P70427	Gene names	Pitx1, Bft, Potx, Ptx1
Domain Architecture
Description	Pituitary homeobox 1 (Homeobox protein P-OTX) (Pituitary OTX-related factor) (Hindlimb expressed homeobox protein backfoot) (Ptx1).

GSCL_HUMAN
NC score	0.258237 (rank : 18)	θ value	0.47712 (rank : 97)
Query Neighborhood Hits	334	Target Neighborhood Hits	343	Shared Neighborhood Hits	201
SwissProt Accessions	O15499	Gene names	GSCL
Domain Architecture
Description	Homeobox protein goosecoid-like (GSC-2).

SIX4_HUMAN
NC score	0.256073 (rank : 19)	θ value	0.00665767 (rank : 17)
Query Neighborhood Hits	334	Target Neighborhood Hits	342	Shared Neighborhood Hits	190
SwissProt Accessions	Q9UIU6	Gene names	SIX4
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4).

SIX4_MOUSE
NC score	0.252837 (rank : 20)	θ value	0.00390308 (rank : 15)
Query Neighborhood Hits	334	Target Neighborhood Hits	341	Shared Neighborhood Hits	187
SwissProt Accessions	Q61321, Q61322, Q61323	Gene names	Six4, Arec3
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4) (Skeletal muscle-specific ARE-binding protein AREC3).

PEPP1_HUMAN
NC score	0.250896 (rank : 21)	θ value	4.03905 (rank : 241)
Query Neighborhood Hits	334	Target Neighborhood Hits	338	Shared Neighborhood Hits	202
SwissProt Accessions	Q8NHV9, O95030, Q3SYE0	Gene names	PEPP1, OTEX
Domain Architecture
Description	Paired-like homeobox protein PEPP-1 (Ovary-, testis- and epididymis- expressed gene protein).

DUX1_HUMAN
NC score	0.249383 (rank : 22)	θ value	0.62314 (rank : 104)
Query Neighborhood Hits	334	Target Neighborhood Hits	330	Shared Neighborhood Hits	201
SwissProt Accessions	O43812	Gene names	DUX1
Domain Architecture	No domain graphic available
Description	Double homeobox protein 1.

ATBF1_HUMAN
NC score	0.248287 (rank : 23)	θ value	3.41135e-07 (rank : 9)
Query Neighborhood Hits	334	Target Neighborhood Hits	1547	Shared Neighborhood Hits	268
SwissProt Accessions	Q15911, O15101, Q13719	Gene names	ATBF1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

DUX5_HUMAN
NC score	0.248235 (rank : 24)	θ value	0.62314 (rank : 105)
Query Neighborhood Hits	334	Target Neighborhood Hits	330	Shared Neighborhood Hits	201
SwissProt Accessions	Q96PT3	Gene names	DUX5
Domain Architecture	No domain graphic available
Description	Double homeobox protein 5.

ATBF1_MOUSE
NC score	0.246453 (rank : 25)	θ value	1.29631e-06 (rank : 10)
Query Neighborhood Hits	334	Target Neighborhood Hits	1841	Shared Neighborhood Hits	277
SwissProt Accessions	Q61329	Gene names	Atbf1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

OTP_MOUSE
NC score	0.244198 (rank : 26)	θ value	0.0431538 (rank : 39)
Query Neighborhood Hits	334	Target Neighborhood Hits	387	Shared Neighborhood Hits	213
SwissProt Accessions	O09113	Gene names	Otp
Domain Architecture
Description	Homeobox protein orthopedia.

GSC_MOUSE
NC score	0.243371 (rank : 27)	θ value	0.813845 (rank : 126)
Query Neighborhood Hits	334	Target Neighborhood Hits	368	Shared Neighborhood Hits	210
SwissProt Accessions	Q02591	Gene names	Gsc
Domain Architecture
Description	Homeobox protein goosecoid.

GSC_HUMAN
NC score	0.241754 (rank : 28)	θ value	0.813845 (rank : 125)
Query Neighborhood Hits	334	Target Neighborhood Hits	369	Shared Neighborhood Hits	213
SwissProt Accessions	P56915, Q86YR1	Gene names	GSC
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid.

DUX4_HUMAN
NC score	0.239821 (rank : 29)	θ value	5.27518 (rank : 251)
Query Neighborhood Hits	334	Target Neighborhood Hits	403	Shared Neighborhood Hits	207
SwissProt Accessions	Q9UBX2	Gene names	DUX4, DUX10
Domain Architecture	No domain graphic available
Description	Double homeobox protein 4 (Double homeobox protein 10) (Double homeobox protein 4/10).

DLX5_MOUSE
NC score	0.236304 (rank : 30)	θ value	0.0330416 (rank : 31)
Query Neighborhood Hits	334	Target Neighborhood Hits	434	Shared Neighborhood Hits	215
SwissProt Accessions	P70396, O54876, O54877, O54878, Q9JJ45	Gene names	Dlx5
Domain Architecture
Description	Homeobox protein DLX-5.

DLX4_HUMAN
NC score	0.236068 (rank : 31)	θ value	1.38821 (rank : 167)
Query Neighborhood Hits	334	Target Neighborhood Hits	350	Shared Neighborhood Hits	209
SwissProt Accessions	Q92988, O60480, Q13265, Q6PJK0, Q9HBE0	Gene names	DLX4, BP1, DLX7, DLX8
Domain Architecture	No domain graphic available
Description	Homeobox protein DLX-4 (DLX-7) (DLX-8) (Beta protein 1).

DUX3_HUMAN
NC score	0.235681 (rank : 32)	θ value	2.36792 (rank : 201)
Query Neighborhood Hits	334	Target Neighborhood Hits	312	Shared Neighborhood Hits	195
SwissProt Accessions	Q96PT4, Q9UND2	Gene names	DUX3
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 3.

ZFHX2_HUMAN
NC score	0.235513 (rank : 33)	θ value	0.62314 (rank : 120)
Query Neighborhood Hits	334	Target Neighborhood Hits	1178	Shared Neighborhood Hits	250
SwissProt Accessions	Q9C0A1	Gene names	ZFHX2, KIAA1762
Domain Architecture
Description	Zinc finger homeobox protein 2.

PAX3_MOUSE
NC score	0.235022 (rank : 34)	θ value	0.0330416 (rank : 34)
Query Neighborhood Hits	334	Target Neighborhood Hits	478	Shared Neighborhood Hits	210
SwissProt Accessions	P24610, Q3UFQ9, Q8BRE7, Q9CXI6	Gene names	Pax3, Pax-3
Domain Architecture
Description	Paired box protein Pax-3.

PAX7_MOUSE
NC score	0.234953 (rank : 35)	θ value	0.0252991 (rank : 27)
Query Neighborhood Hits	334	Target Neighborhood Hits	422	Shared Neighborhood Hits	217
SwissProt Accessions	P47239, Q9ES16	Gene names	Pax7, Pax-7
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-7.

PAX3_HUMAN
NC score	0.234949 (rank : 36)	θ value	0.0330416 (rank : 33)
Query Neighborhood Hits	334	Target Neighborhood Hits	513	Shared Neighborhood Hits	211
SwissProt Accessions	P23760, Q16448	Gene names	PAX3, HUP2
Domain Architecture
Description	Paired box protein Pax-3 (HUP2).

PRRXL_MOUSE
NC score	0.234939 (rank : 37)	θ value	1.38821 (rank : 175)
Query Neighborhood Hits	334	Target Neighborhood Hits	350	Shared Neighborhood Hits	209
SwissProt Accessions	Q8BYH0, Q8K3F8	Gene names	Prrxl1, Drg11
Domain Architecture	No domain graphic available
Description	Paired-related homeobox protein-like 1 (Dorsal root ganglion 11) (Homeobox protein DRG11).

DLX5_HUMAN
NC score	0.233861 (rank : 38)	θ value	0.0736092 (rank : 53)
Query Neighborhood Hits	334	Target Neighborhood Hits	405	Shared Neighborhood Hits	215
SwissProt Accessions	P56178, Q9UPL1	Gene names	DLX5
Domain Architecture
Description	Homeobox protein DLX-5.

PAX7_HUMAN
NC score	0.233255 (rank : 39)	θ value	0.0252991 (rank : 26)
Query Neighborhood Hits	334	Target Neighborhood Hits	456	Shared Neighborhood Hits	218
SwissProt Accessions	P23759	Gene names	PAX7, HUP1
Domain Architecture
Description	Paired box protein Pax-7 (HUP1).

RX_MOUSE
NC score	0.231933 (rank : 40)	θ value	0.62314 (rank : 117)
Query Neighborhood Hits	334	Target Neighborhood Hits	429	Shared Neighborhood Hits	206
SwissProt Accessions	O35602, O08748	Gene names	Rax, Rx
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

SHOX_HUMAN
NC score	0.231497 (rank : 41)	θ value	4.03905 (rank : 245)
Query Neighborhood Hits	334	Target Neighborhood Hits	363	Shared Neighborhood Hits	198
SwissProt Accessions	O15266, O00412, O00413, O15267	Gene names	SHOX, PHOG
Domain Architecture
Description	Short stature homeobox protein (Short stature homeobox-containing protein) (Pseudoautosomal homeobox-containing osteogenic protein).

SIX5_HUMAN
NC score	0.230867 (rank : 42)	θ value	0.0563607 (rank : 50)
Query Neighborhood Hits	334	Target Neighborhood Hits	386	Shared Neighborhood Hits	180
SwissProt Accessions	Q8N196	Gene names	SIX5, DMAHP
Domain Architecture	No domain graphic available
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein).

DLX3_HUMAN
NC score	0.230517 (rank : 43)	θ value	0.21417 (rank : 71)
Query Neighborhood Hits	334	Target Neighborhood Hits	369	Shared Neighborhood Hits	215
SwissProt Accessions	O60479	Gene names	DLX3
Domain Architecture
Description	Homeobox protein DLX-3.

SIX2_MOUSE
NC score	0.230438 (rank : 44)	θ value	0.365318 (rank : 94)
Query Neighborhood Hits	334	Target Neighborhood Hits	376	Shared Neighborhood Hits	207
SwissProt Accessions	Q62232, P70179	Gene names	Six2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

LHX6_MOUSE
NC score	0.230263 (rank : 45)	θ value	0.0961366 (rank : 59)
Query Neighborhood Hits	334	Target Neighborhood Hits	399	Shared Neighborhood Hits	197
SwissProt Accessions	O88706	Gene names	Lhx6
Domain Architecture
Description	LIM/homeobox protein Lhx6.

PAX4_HUMAN
NC score	0.229451 (rank : 46)	θ value	0.0431538 (rank : 40)
Query Neighborhood Hits	334	Target Neighborhood Hits	367	Shared Neighborhood Hits	214
SwissProt Accessions	O43316, O95161, Q6B0H0	Gene names	PAX4
Domain Architecture
Description	Paired box protein Pax-4.

LHX5_HUMAN
NC score	0.227652 (rank : 47)	θ value	0.00869519 (rank : 18)
Query Neighborhood Hits	334	Target Neighborhood Hits	453	Shared Neighborhood Hits	200
SwissProt Accessions	Q9H2C1	Gene names	LHX5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

RX_HUMAN
NC score	0.227299 (rank : 48)	θ value	0.47712 (rank : 100)
Query Neighborhood Hits	334	Target Neighborhood Hits	423	Shared Neighborhood Hits	208
SwissProt Accessions	Q9Y2V3	Gene names	RAX, RX
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

SHOX2_HUMAN
NC score	0.227208 (rank : 49)	θ value	3.0926 (rank : 226)
Query Neighborhood Hits	334	Target Neighborhood Hits	353	Shared Neighborhood Hits	198
SwissProt Accessions	O60902, O60465, O60467, O60903	Gene names	SHOX2, OG12X, SHOT
Domain Architecture
Description	Short stature homeobox protein 2 (Paired-related homeobox protein SHOT) (Homeobox protein Og12X).

LHX8_MOUSE
NC score	0.226968 (rank : 50)	θ value	0.0736092 (rank : 54)
Query Neighborhood Hits	334	Target Neighborhood Hits	406	Shared Neighborhood Hits	194
SwissProt Accessions	O35652, O70163, O88707	Gene names	Lhx8, Lhx7
Domain Architecture
Description	LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3).

LHX61_HUMAN
NC score	0.226968 (rank : 51)	θ value	0.0961366 (rank : 58)
Query Neighborhood Hits	334	Target Neighborhood Hits	412	Shared Neighborhood Hits	194
SwissProt Accessions	Q9UPM6, Q5T7S8, Q9NTK3, Q9UPM5	Gene names	LHX6, LHX6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1 (Lhx6).

SHOX2_MOUSE
NC score	0.226956 (rank : 52)	θ value	4.03905 (rank : 244)
Query Neighborhood Hits	334	Target Neighborhood Hits	348	Shared Neighborhood Hits	198
SwissProt Accessions	P70390, P70369	Gene names	Shox2, Og12x, Prx3
Domain Architecture
Description	Short stature homeobox protein 2 (Homeobox protein Og12X) (OG-12) (Paired family homeodomain protein Prx3).

CRX_HUMAN
NC score	0.225910 (rank : 53)	θ value	θ > 10 (rank : 340)
Query Neighborhood Hits	334	Target Neighborhood Hits	360	Shared Neighborhood Hits	205
SwissProt Accessions	O43186	Gene names	CRX, CORD2
Domain Architecture
Description	Cone-rod homeobox protein.

DLX2_HUMAN
NC score	0.225445 (rank : 54)	θ value	0.0563607 (rank : 45)
Query Neighborhood Hits	334	Target Neighborhood Hits	355	Shared Neighborhood Hits	214
SwissProt Accessions	Q07687	Gene names	DLX2
Domain Architecture
Description	Homeobox protein DLX-2.

SIX2_HUMAN
NC score	0.224894 (rank : 55)	θ value	1.81305 (rank : 196)
Query Neighborhood Hits	334	Target Neighborhood Hits	345	Shared Neighborhood Hits	198
SwissProt Accessions	Q9NPC8, Q9BXH7	Gene names	SIX2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

PAX4_MOUSE
NC score	0.224831 (rank : 56)	θ value	0.279714 (rank : 86)
Query Neighborhood Hits	334	Target Neighborhood Hits	370	Shared Neighborhood Hits	212
SwissProt Accessions	P32115, P97341, Q9QUR1, Q9R091	Gene names	Pax4, Pax-4
Domain Architecture
Description	Paired box protein Pax-4.

SIX5_MOUSE
NC score	0.224400 (rank : 57)	θ value	0.21417 (rank : 77)
Query Neighborhood Hits	334	Target Neighborhood Hits	354	Shared Neighborhood Hits	170
SwissProt Accessions	P70178	Gene names	Six5, Dmahp
Domain Architecture
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein homolog).

ALX4_HUMAN
NC score	0.224300 (rank : 58)	θ value	0.365318 (rank : 90)
Query Neighborhood Hits	334	Target Neighborhood Hits	394	Shared Neighborhood Hits	211
SwissProt Accessions	Q9H161, Q96JN7, Q9H198, Q9HAY9	Gene names	ALX4, KIAA1788
Domain Architecture
Description	Homeobox protein aristaless-like 4.

VSX1_MOUSE
NC score	0.224250 (rank : 59)	θ value	0.813845 (rank : 143)
Query Neighborhood Hits	334	Target Neighborhood Hits	356	Shared Neighborhood Hits	191
SwissProt Accessions	Q91V10	Gene names	Vsx1, Rinx
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

DLX2_MOUSE
NC score	0.224181 (rank : 60)	θ value	0.21417 (rank : 70)
Query Neighborhood Hits	334	Target Neighborhood Hits	352	Shared Neighborhood Hits	214
SwissProt Accessions	P40764	Gene names	Dlx2, Tes-1, Tes1
Domain Architecture
Description	Homeobox protein DLX-2 (Homeobox protein TES-1).

LHX1_HUMAN
NC score	0.223788 (rank : 61)	θ value	0.0330416 (rank : 32)
Query Neighborhood Hits	334	Target Neighborhood Hits	453	Shared Neighborhood Hits	200
SwissProt Accessions	P48742, Q3MIW0	Gene names	LHX1, LIM1
Domain Architecture
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

PAX6_HUMAN
NC score	0.223547 (rank : 62)	θ value	0.0563607 (rank : 48)
Query Neighborhood Hits	334	Target Neighborhood Hits	383	Shared Neighborhood Hits	206
SwissProt Accessions	P26367, Q6N006, Q99413	Gene names	PAX6, AN2
Domain Architecture
Description	Paired box protein Pax-6 (Oculorhombin) (Aniridia type II protein).

PAX6_MOUSE
NC score	0.223547 (rank : 63)	θ value	0.0563607 (rank : 49)
Query Neighborhood Hits	334	Target Neighborhood Hits	383	Shared Neighborhood Hits	206
SwissProt Accessions	P63015, P32117, P70601, Q62222, Q64037, Q8CEI5, Q8VDB5, Q921Q8	Gene names	Pax6, Pax-6, Sey
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-6 (Oculorhombin).

DLX3_MOUSE
NC score	0.223127 (rank : 64)	θ value	2.36792 (rank : 199)
Query Neighborhood Hits	334	Target Neighborhood Hits	367	Shared Neighborhood Hits	214
SwissProt Accessions	Q64205	Gene names	Dlx3
Domain Architecture
Description	Homeobox protein DLX-3.

LHX1_MOUSE
NC score	0.222947 (rank : 65)	θ value	0.0431538 (rank : 38)
Query Neighborhood Hits	334	Target Neighborhood Hits	453	Shared Neighborhood Hits	200
SwissProt Accessions	P63006, P36199	Gene names	Lhx1, Lim-1, Lim1
Domain Architecture	No domain graphic available
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

HME2_HUMAN
NC score	0.222743 (rank : 66)	θ value	0.62314 (rank : 108)
Query Neighborhood Hits	334	Target Neighborhood Hits	355	Shared Neighborhood Hits	208
SwissProt Accessions	P19622	Gene names	EN2
Domain Architecture
Description	Homeobox protein engrailed-2 (Hu-En-2).

HME2_MOUSE
NC score	0.222560 (rank : 67)	θ value	0.62314 (rank : 109)
Query Neighborhood Hits	334	Target Neighborhood Hits	352	Shared Neighborhood Hits	208
SwissProt Accessions	P09066	Gene names	En2, En-2
Domain Architecture
Description	Homeobox protein engrailed-2 (Mo-En-2).

HXC13_HUMAN
NC score	0.222456 (rank : 68)	θ value	0.0113563 (rank : 20)
Query Neighborhood Hits	334	Target Neighborhood Hits	336	Shared Neighborhood Hits	204
SwissProt Accessions	P31276, Q96J32, Q9NR24, Q9NYD5	Gene names	HOXC13, HOX3G
Domain Architecture
Description	Homeobox protein Hox-C13 (Hox-3G).

HXC13_MOUSE
NC score	0.222425 (rank : 69)	θ value	0.0113563 (rank : 21)
Query Neighborhood Hits	334	Target Neighborhood Hits	337	Shared Neighborhood Hits	204
SwissProt Accessions	P50207, Q53Z78, Q920I7	Gene names	Hoxc13, Hoxc-13
Domain Architecture
Description	Homeobox protein Hox-C13.

SIX1_MOUSE
NC score	0.222027 (rank : 70)	θ value	0.813845 (rank : 139)
Query Neighborhood Hits	334	Target Neighborhood Hits	341	Shared Neighborhood Hits	201
SwissProt Accessions	Q62231, Q8CIL7	Gene names	Six1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

SIX1_HUMAN
NC score	0.222017 (rank : 71)	θ value	0.813845 (rank : 138)
Query Neighborhood Hits	334	Target Neighborhood Hits	343	Shared Neighborhood Hits	201
SwissProt Accessions	Q15475, Q96H64	Gene names	SIX1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

ESX1L_HUMAN
NC score	0.222011 (rank : 72)	θ value	5.27518 (rank : 253)
Query Neighborhood Hits	334	Target Neighborhood Hits	498	Shared Neighborhood Hits	197
SwissProt Accessions	Q8N693, Q7Z6K7	Gene names	ESX1L, ESX1R
Domain Architecture
Description	Extraembryonic, spermatogenesis, homeobox 1-like protein.

CRX_MOUSE
NC score	0.221172 (rank : 73)	θ value	θ > 10 (rank : 341)
Query Neighborhood Hits	334	Target Neighborhood Hits	359	Shared Neighborhood Hits	201
SwissProt Accessions	O54751	Gene names	Crx
Domain Architecture
Description	Cone-rod homeobox protein.

PRRX2_MOUSE
NC score	0.221045 (rank : 74)	θ value	1.81305 (rank : 195)
Query Neighborhood Hits	334	Target Neighborhood Hits	351	Shared Neighborhood Hits	205
SwissProt Accessions	Q06348, Q61651	Gene names	Prrx2, Prx2, S8
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Homeobox protein S8).

LHX5_MOUSE
NC score	0.220772 (rank : 75)	θ value	0.21417 (rank : 73)
Query Neighborhood Hits	334	Target Neighborhood Hits	456	Shared Neighborhood Hits	200
SwissProt Accessions	P61375, P50459	Gene names	Lhx5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

DLX1_MOUSE
NC score	0.220671 (rank : 76)	θ value	0.62314 (rank : 103)
Query Neighborhood Hits	334	Target Neighborhood Hits	343	Shared Neighborhood Hits	212
SwissProt Accessions	Q64317	Gene names	Dlx1
Domain Architecture
Description	Homeobox protein DLX-1.

DLX1_HUMAN
NC score	0.220478 (rank : 77)	θ value	0.62314 (rank : 102)
Query Neighborhood Hits	334	Target Neighborhood Hits	343	Shared Neighborhood Hits	212
SwissProt Accessions	P56177, Q53ZU4, Q8IYB2	Gene names	DLX1
Domain Architecture
Description	Homeobox protein DLX-1.

ALX4_MOUSE
NC score	0.220030 (rank : 78)	θ value	3.0926 (rank : 210)
Query Neighborhood Hits	334	Target Neighborhood Hits	369	Shared Neighborhood Hits	213
SwissProt Accessions	O35137	Gene names	Alx4
Domain Architecture
Description	Homeobox protein aristaless-like 4 (ALX-4).

DLX4_MOUSE
NC score	0.219872 (rank : 79)	θ value	2.36792 (rank : 200)
Query Neighborhood Hits	334	Target Neighborhood Hits	352	Shared Neighborhood Hits	208
SwissProt Accessions	P70436, Q3UM51, Q8R4I3	Gene names	Dlx4, Dlx7
Domain Architecture
Description	Homeobox protein DLX-4 (DLX-7).

ALX3_MOUSE
NC score	0.219672 (rank : 80)	θ value	6.88961 (rank : 277)
Query Neighborhood Hits	334	Target Neighborhood Hits	386	Shared Neighborhood Hits	211
SwissProt Accessions	O70137	Gene names	Alx3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

VSX1_HUMAN
NC score	0.219226 (rank : 81)	θ value	0.813845 (rank : 142)
Query Neighborhood Hits	334	Target Neighborhood Hits	344	Shared Neighborhood Hits	194
SwissProt Accessions	Q9NZR4, Q5TF40, Q5TF41, Q9HCU3, Q9NU27	Gene names	VSX1, RINX
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

OTX1_HUMAN
NC score	0.218996 (rank : 82)	θ value	θ > 10 (rank : 437)
Query Neighborhood Hits	334	Target Neighborhood Hits	379	Shared Neighborhood Hits	204
SwissProt Accessions	P32242, Q53TG6	Gene names	OTX1
Domain Architecture
Description	Homeobox protein OTX1.

ALX3_HUMAN
NC score	0.217823 (rank : 83)	θ value	6.88961 (rank : 276)
Query Neighborhood Hits	334	Target Neighborhood Hits	380	Shared Neighborhood Hits	211
SwissProt Accessions	O95076, O95075	Gene names	ALX3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

PRRX2_HUMAN
NC score	0.217426 (rank : 84)	θ value	θ > 10 (rank : 476)
Query Neighborhood Hits	334	Target Neighborhood Hits	348	Shared Neighborhood Hits	204
SwissProt Accessions	Q99811, Q9UIB3	Gene names	PRRX2, PMX2, PRX2
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Paired-related homeobox protein 2).

DLX6_HUMAN
NC score	0.217038 (rank : 85)	θ value	1.06291 (rank : 148)
Query Neighborhood Hits	334	Target Neighborhood Hits	341	Shared Neighborhood Hits	211
SwissProt Accessions	P56179, Q3ZAR6, Q9UPL2	Gene names	DLX6
Domain Architecture
Description	Homeobox protein DLX-6.

LHX61_MOUSE
NC score	0.216278 (rank : 86)	θ value	0.279714 (rank : 85)
Query Neighborhood Hits	334	Target Neighborhood Hits	396	Shared Neighborhood Hits	187
SwissProt Accessions	Q9R1R0, Q9R1R1	Gene names	Lhx6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1.

HME1_MOUSE
NC score	0.214547 (rank : 87)	θ value	1.38821 (rank : 169)
Query Neighborhood Hits	334	Target Neighborhood Hits	397	Shared Neighborhood Hits	204
SwissProt Accessions	P09065	Gene names	En1, En-1
Domain Architecture
Description	Homeobox protein engrailed-1 (Mo-En-1).

HME1_HUMAN
NC score	0.214487 (rank : 88)	θ value	1.81305 (rank : 184)
Query Neighborhood Hits	334	Target Neighborhood Hits	384	Shared Neighborhood Hits	204
SwissProt Accessions	Q05925	Gene names	EN1
Domain Architecture
Description	Homeobox protein engrailed-1 (Hu-En-1).

DBX1_MOUSE
NC score	0.214221 (rank : 89)	θ value	0.813845 (rank : 123)
Query Neighborhood Hits	334	Target Neighborhood Hits	346	Shared Neighborhood Hits	202
SwissProt Accessions	P52950	Gene names	Dbx1, Dbx
Domain Architecture
Description	Homeobox protein DBX1.

PRRX1_MOUSE
NC score	0.214080 (rank : 90)	θ value	θ > 10 (rank : 475)
Query Neighborhood Hits	334	Target Neighborhood Hits	346	Shared Neighborhood Hits	204
SwissProt Accessions	P63013, P43271, Q02810	Gene names	Prrx1, Pmx, Pmx1
Domain Architecture	No domain graphic available
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein mHox) (Homeobox protein K-2).

PRRX1_HUMAN
NC score	0.214070 (rank : 91)	θ value	θ > 10 (rank : 474)
Query Neighborhood Hits	334	Target Neighborhood Hits	347	Shared Neighborhood Hits	204
SwissProt Accessions	P54821, O60807	Gene names	PRRX1, PMX1
Domain Architecture
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein PHOX1).

LHX2_MOUSE
NC score	0.213697 (rank : 92)	θ value	0.47712 (rank : 98)
Query Neighborhood Hits	334	Target Neighborhood Hits	431	Shared Neighborhood Hits	197
SwissProt Accessions	Q9Z0S2	Gene names	Lhx2
Domain Architecture
Description	LIM/homeobox protein Lhx2.

OTX1_MOUSE
NC score	0.213496 (rank : 93)	θ value	θ > 10 (rank : 438)
Query Neighborhood Hits	334	Target Neighborhood Hits	372	Shared Neighborhood Hits	206
SwissProt Accessions	P80205	Gene names	Otx1, Otx-1
Domain Architecture
Description	Homeobox protein OTX1.

LHX2_HUMAN
NC score	0.213375 (rank : 94)	θ value	1.81305 (rank : 192)
Query Neighborhood Hits	334	Target Neighborhood Hits	432	Shared Neighborhood Hits	197
SwissProt Accessions	P50458, O95860, Q8N1Z3	Gene names	LHX2, LH2
Domain Architecture
Description	LIM/homeobox protein Lhx2 (Homeobox protein LH-2).

PHX2B_HUMAN
NC score	0.213352 (rank : 95)	θ value	θ > 10 (rank : 453)
Query Neighborhood Hits	334	Target Neighborhood Hits	407	Shared Neighborhood Hits	203
SwissProt Accessions	Q99453, Q6PJD9	Gene names	PHOX2B, PMX2B
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

PHX2B_MOUSE
NC score	0.213352 (rank : 96)	θ value	θ > 10 (rank : 454)
Query Neighborhood Hits	334	Target Neighborhood Hits	407	Shared Neighborhood Hits	203
SwissProt Accessions	O35690	Gene names	Phox2b, Pmx2b
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

ARX_HUMAN
NC score	0.211890 (rank : 97)	θ value	1.81305 (rank : 179)
Query Neighborhood Hits	334	Target Neighborhood Hits	401	Shared Neighborhood Hits	201
SwissProt Accessions	Q96QS3	Gene names	ARX
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

ARX_MOUSE
NC score	0.211388 (rank : 98)	θ value	1.81305 (rank : 180)
Query Neighborhood Hits	334	Target Neighborhood Hits	398	Shared Neighborhood Hits	199
SwissProt Accessions	O35085, Q9QYT4	Gene names	Arx
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

LHX9_HUMAN
NC score	0.211189 (rank : 99)	θ value	0.21417 (rank : 74)
Query Neighborhood Hits	334	Target Neighborhood Hits	444	Shared Neighborhood Hits	199
SwissProt Accessions	Q9NQ69, Q5VUE3, Q9BYU6, Q9NQ70	Gene names	LHX9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

LHX9_MOUSE
NC score	0.211176 (rank : 100)	θ value	0.21417 (rank : 75)
Query Neighborhood Hits	334	Target Neighborhood Hits	445	Shared Neighborhood Hits	199
SwissProt Accessions	Q9WUH2, Q9QYQ5, Q9QYQ6, Q9QZ00, Q9WU44	Gene names	Lhx9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

PHX2A_MOUSE
NC score	0.211074 (rank : 101)	θ value	θ > 10 (rank : 452)
Query Neighborhood Hits	334	Target Neighborhood Hits	338	Shared Neighborhood Hits	202
SwissProt Accessions	Q62066	Gene names	Phox2a, Arix, Phox2, Pmx2, Pmx2a
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (PHOX2A homeodomain protein) (Aristaless homeobox protein homolog).

PHX2A_HUMAN
NC score	0.210630 (rank : 102)	θ value	θ > 10 (rank : 451)
Query Neighborhood Hits	334	Target Neighborhood Hits	345	Shared Neighborhood Hits	203
SwissProt Accessions	O14813, Q8IVZ2	Gene names	PHOX2A, ARIX, PMX2A
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (Aristaless homeobox protein homolog) (ARIX1 homeodomain protein).

OTX2_MOUSE
NC score	0.210143 (rank : 103)	θ value	θ > 10 (rank : 440)
Query Neighborhood Hits	334	Target Neighborhood Hits	345	Shared Neighborhood Hits	201
SwissProt Accessions	P80206	Gene names	Otx2, Otx-2
Domain Architecture
Description	Homeobox protein OTX2.

CART1_HUMAN
NC score	0.209992 (rank : 104)	θ value	4.03905 (rank : 230)
Query Neighborhood Hits	334	Target Neighborhood Hits	348	Shared Neighborhood Hits	207
SwissProt Accessions	Q15699, Q546C8, Q96FH4	Gene names	CART1
Domain Architecture
Description	Cartilage homeoprotein 1 (CART-1).

EMX2_MOUSE
NC score	0.209660 (rank : 105)	θ value	3.0926 (rank : 216)
Query Neighborhood Hits	334	Target Neighborhood Hits	340	Shared Neighborhood Hits	212
SwissProt Accessions	Q04744, Q80UE7	Gene names	Emx2, Emx-2
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

ISL1_HUMAN
NC score	0.209592 (rank : 106)	θ value	0.0431538 (rank : 36)
Query Neighborhood Hits	334	Target Neighborhood Hits	421	Shared Neighborhood Hits	200
SwissProt Accessions	P61371, P20663, P47894	Gene names	ISL1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

ISL1_MOUSE
NC score	0.209592 (rank : 107)	θ value	0.0431538 (rank : 37)
Query Neighborhood Hits	334	Target Neighborhood Hits	421	Shared Neighborhood Hits	200
SwissProt Accessions	P61372, P20663, P47894, Q812D8	Gene names	Isl1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

NKX25_HUMAN
NC score	0.209561 (rank : 108)	θ value	1.38821 (rank : 171)
Query Neighborhood Hits	334	Target Neighborhood Hits	338	Shared Neighborhood Hits	209
SwissProt Accessions	P52952	Gene names	NKX2-5, CSX, NKX2.5, NKX2E
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

CART1_MOUSE
NC score	0.209474 (rank : 109)	θ value	5.27518 (rank : 249)
Query Neighborhood Hits	334	Target Neighborhood Hits	344	Shared Neighborhood Hits	206
SwissProt Accessions	Q8C8B0, Q8C370	Gene names	Cart1
Domain Architecture	No domain graphic available
Description	Cartilage homeoprotein 1 (CART-1).

EMX2_HUMAN
NC score	0.209397 (rank : 110)	θ value	3.0926 (rank : 215)
Query Neighborhood Hits	334	Target Neighborhood Hits	341	Shared Neighborhood Hits	211
SwissProt Accessions	Q04743, Q96NN8, Q9BQF4	Gene names	EMX2
Domain Architecture
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

HXA13_HUMAN
NC score	0.209265 (rank : 111)	θ value	1.06291 (rank : 150)
Query Neighborhood Hits	334	Target Neighborhood Hits	353	Shared Neighborhood Hits	209
SwissProt Accessions	P31271, O43371	Gene names	HOXA13, HOX1J
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1J).

IRX6_HUMAN
NC score	0.208953 (rank : 112)	θ value	0.279714 (rank : 84)
Query Neighborhood Hits	334	Target Neighborhood Hits	262	Shared Neighborhood Hits	147
SwissProt Accessions	P78412, Q7Z2K0	Gene names	IRX6, IRX7, IRXB3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

HXA13_MOUSE
NC score	0.208902 (rank : 113)	θ value	1.06291 (rank : 151)
Query Neighborhood Hits	334	Target Neighborhood Hits	351	Shared Neighborhood Hits	208
SwissProt Accessions	Q62424	Gene names	Hoxa13, Hox-1.10
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1.10).

HMX2_MOUSE
NC score	0.208873 (rank : 114)	θ value	0.0113563 (rank : 19)
Query Neighborhood Hits	334	Target Neighborhood Hits	354	Shared Neighborhood Hits	208
SwissProt Accessions	P43687, Q8R1Q2	Gene names	Hmx2, Nkx-5.2, Nkx5-2
Domain Architecture
Description	Homeobox protein HMX2 (Homeobox protein Nkx-5.2).

CHX10_MOUSE
NC score	0.208863 (rank : 115)	θ value	6.88961 (rank : 281)
Query Neighborhood Hits	334	Target Neighborhood Hits	340	Shared Neighborhood Hits	195
SwissProt Accessions	Q61412	Gene names	Chx10, Vsx2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

BARH2_HUMAN
NC score	0.208317 (rank : 116)	θ value	0.21417 (rank : 69)
Query Neighborhood Hits	334	Target Neighborhood Hits	419	Shared Neighborhood Hits	207
SwissProt Accessions	Q9NY43, Q7Z4N7	Gene names	BARHL2
Domain Architecture
Description	BarH-like 2 homeobox protein.

LHX4_HUMAN
NC score	0.208300 (rank : 117)	θ value	0.62314 (rank : 112)
Query Neighborhood Hits	334	Target Neighborhood Hits	455	Shared Neighborhood Hits	213
SwissProt Accessions	Q969G2, Q8NHE0, Q8TCJ1, Q8WWX2, Q969W2	Gene names	LHX4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

MEOX1_HUMAN
NC score	0.208299 (rank : 118)	θ value	0.0961366 (rank : 60)
Query Neighborhood Hits	334	Target Neighborhood Hits	342	Shared Neighborhood Hits	199
SwissProt Accessions	P50221	Gene names	MEOX1, MOX1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

ISL2_HUMAN
NC score	0.208106 (rank : 119)	θ value	0.62314 (rank : 110)
Query Neighborhood Hits	334	Target Neighborhood Hits	435	Shared Neighborhood Hits	202
SwissProt Accessions	Q96A47	Gene names	ISL2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

IRX2_HUMAN
NC score	0.208067 (rank : 120)	θ value	0.0961366 (rank : 57)
Query Neighborhood Hits	334	Target Neighborhood Hits	358	Shared Neighborhood Hits	132
SwissProt Accessions	Q9BZI1, Q7Z2I7	Gene names	IRX2, IRXA2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

NKX25_MOUSE
NC score	0.207921 (rank : 121)	θ value	2.36792 (rank : 205)
Query Neighborhood Hits	334	Target Neighborhood Hits	347	Shared Neighborhood Hits	209
SwissProt Accessions	P42582, P97335	Gene names	Nkx2-5, Csx, Nkx-2.5, Nkx2e
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

LHX4_MOUSE
NC score	0.207799 (rank : 122)	θ value	0.62314 (rank : 113)
Query Neighborhood Hits	334	Target Neighborhood Hits	457	Shared Neighborhood Hits	213
SwissProt Accessions	P53776, O08916, Q9R280	Gene names	Lhx4, Gsh-4, Gsh4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

BARH1_HUMAN
NC score	0.207798 (rank : 123)	θ value	0.125558 (rank : 62)
Query Neighborhood Hits	334	Target Neighborhood Hits	373	Shared Neighborhood Hits	208
SwissProt Accessions	Q9BZE3, Q9NY88	Gene names	BARHL1
Domain Architecture
Description	BarH-like 1 homeobox protein.

VAX1_HUMAN
NC score	0.207793 (rank : 124)	θ value	1.06291 (rank : 160)
Query Neighborhood Hits	334	Target Neighborhood Hits	355	Shared Neighborhood Hits	203
SwissProt Accessions	Q5SQQ9, Q6ZSX0	Gene names	VAX1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

VAX1_MOUSE
NC score	0.207687 (rank : 125)	θ value	1.06291 (rank : 161)
Query Neighborhood Hits	334	Target Neighborhood Hits	351	Shared Neighborhood Hits	203
SwissProt Accessions	Q2NKI2, O88880	Gene names	Vax1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

MEOX1_MOUSE
NC score	0.207643 (rank : 126)	θ value	0.62314 (rank : 114)
Query Neighborhood Hits	334	Target Neighborhood Hits	345	Shared Neighborhood Hits	206
SwissProt Accessions	P32442	Gene names	Meox1, Mox-1, Mox1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

CHX10_HUMAN
NC score	0.207507 (rank : 127)	θ value	6.88961 (rank : 280)
Query Neighborhood Hits	334	Target Neighborhood Hits	340	Shared Neighborhood Hits	195
SwissProt Accessions	P58304	Gene names	CHX10, VSX2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

HXB13_HUMAN
NC score	0.207499 (rank : 128)	θ value	1.81305 (rank : 185)
Query Neighborhood Hits	334	Target Neighborhood Hits	377	Shared Neighborhood Hits	209
SwissProt Accessions	Q92826, Q96QM4, Q99810	Gene names	HOXB13
Domain Architecture
Description	Homeobox protein Hox-B13.

PEPP2_HUMAN
NC score	0.207383 (rank : 129)	θ value	1.38821 (rank : 174)
Query Neighborhood Hits	334	Target Neighborhood Hits	316	Shared Neighborhood Hits	188
SwissProt Accessions	Q9BQY4, Q9BR00	Gene names	PEPP2, THG1
Domain Architecture
Description	Paired-like homeobox protein PEPP-2 (Testis homeobox gene 1).

NKX28_HUMAN
NC score	0.207227 (rank : 130)	θ value	0.0736092 (rank : 55)
Query Neighborhood Hits	334	Target Neighborhood Hits	352	Shared Neighborhood Hits	211
SwissProt Accessions	O15522	Gene names	NKX2-8, NKX-2.8, NKX2G, NKX2H
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H).

OTX2_HUMAN
NC score	0.207047 (rank : 131)	θ value	θ > 10 (rank : 439)
Query Neighborhood Hits	334	Target Neighborhood Hits	341	Shared Neighborhood Hits	198
SwissProt Accessions	P32243, Q6GTV3, Q9HAW3, Q9P2R1	Gene names	OTX2
Domain Architecture
Description	Homeobox protein OTX2.

NKX23_HUMAN
NC score	0.206979 (rank : 132)	θ value	4.03905 (rank : 240)
Query Neighborhood Hits	334	Target Neighborhood Hits	346	Shared Neighborhood Hits	209
SwissProt Accessions	Q8TAU0, Q9NYS6	Gene names	NKX2-3, NKX23, NKX2C
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NKX-2.3) (Homeobox protein NK-2 homolog C).

NKX28_MOUSE
NC score	0.206938 (rank : 133)	θ value	0.813845 (rank : 134)
Query Neighborhood Hits	334	Target Neighborhood Hits	347	Shared Neighborhood Hits	210
SwissProt Accessions	O70584	Gene names	Nkx2-8, Nkx-2.9, Nkx2-9, Nkx2h
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H) (Homeobox protein Nkx-2.9).

BARH2_MOUSE
NC score	0.206919 (rank : 134)	θ value	0.365318 (rank : 91)
Query Neighborhood Hits	334	Target Neighborhood Hits	397	Shared Neighborhood Hits	208
SwissProt Accessions	Q8VIB5, Q66L43	Gene names	Barhl2, Barh1, Mbh1
Domain Architecture	No domain graphic available
Description	BarH-like 2 homeobox protein (Bar-class homeodomain protein MBH1) (Homeobox protein B-H1).

NKX61_MOUSE
NC score	0.206799 (rank : 135)	θ value	5.27518 (rank : 268)
Query Neighborhood Hits	334	Target Neighborhood Hits	439	Shared Neighborhood Hits	211
SwissProt Accessions	Q99MA9, Q9ERQ7	Gene names	Nkx6-1, Nkx6.1, Nkx6a
Domain Architecture
Description	Homeobox protein Nkx-6.1.

SIX6_HUMAN
NC score	0.206563 (rank : 136)	θ value	0.365318 (rank : 95)
Query Neighborhood Hits	334	Target Neighborhood Hits	269	Shared Neighborhood Hits	177
SwissProt Accessions	O95475, Q9P1X8	Gene names	SIX6, OPTX2, SIX9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Homeodomain protein OPTX2).

HXB13_MOUSE
NC score	0.206372 (rank : 137)	θ value	2.36792 (rank : 204)
Query Neighborhood Hits	334	Target Neighborhood Hits	384	Shared Neighborhood Hits	205
SwissProt Accessions	P70321, Q80Y12	Gene names	Hoxb13
Domain Architecture
Description	Homeobox protein Hox-B13.

ISL2_MOUSE
NC score	0.206239 (rank : 138)	θ value	1.81305 (rank : 191)
Query Neighborhood Hits	334	Target Neighborhood Hits	426	Shared Neighborhood Hits	199
SwissProt Accessions	Q9CXV0	Gene names	Isl2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

VAX2_HUMAN
NC score	0.205818 (rank : 139)	θ value	0.62314 (rank : 118)
Query Neighborhood Hits	334	Target Neighborhood Hits	337	Shared Neighborhood Hits	200
SwissProt Accessions	Q9UIW0	Gene names	VAX2
Domain Architecture
Description	Ventral anterior homeobox 2.

NKX61_HUMAN
NC score	0.205645 (rank : 140)	θ value	5.27518 (rank : 267)
Query Neighborhood Hits	334	Target Neighborhood Hits	431	Shared Neighborhood Hits	213
SwissProt Accessions	P78426	Gene names	NKX6-1, NKX6A
Domain Architecture
Description	Homeobox protein Nkx-6.1.

VAX2_MOUSE
NC score	0.205563 (rank : 141)	θ value	0.62314 (rank : 119)
Query Neighborhood Hits	334	Target Neighborhood Hits	338	Shared Neighborhood Hits	200
SwissProt Accessions	Q9WTP9	Gene names	Vax2, Vex
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 2 (Ventral retina homeodomain protein).

IRX2_MOUSE
NC score	0.204573 (rank : 142)	θ value	0.21417 (rank : 72)
Query Neighborhood Hits	334	Target Neighborhood Hits	264	Shared Neighborhood Hits	131
SwissProt Accessions	P81066, O55121, Q9ERN1	Gene names	Irx2, Irxa2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

SIX3_HUMAN
NC score	0.204147 (rank : 143)	θ value	1.38821 (rank : 176)
Query Neighborhood Hits	334	Target Neighborhood Hits	285	Shared Neighborhood Hits	185
SwissProt Accessions	O95343	Gene names	SIX3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX3_MOUSE
NC score	0.204115 (rank : 144)	θ value	1.38821 (rank : 177)
Query Neighborhood Hits	334	Target Neighborhood Hits	289	Shared Neighborhood Hits	185
SwissProt Accessions	Q62233, P70176, P70177	Gene names	Six3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

LBX1_HUMAN
NC score	0.203853 (rank : 145)	θ value	θ > 10 (rank : 413)
Query Neighborhood Hits	334	Target Neighborhood Hits	357	Shared Neighborhood Hits	206
SwissProt Accessions	P52954	Gene names	LBX1
Domain Architecture
Description	Transcription factor LBX1.

LHX3_HUMAN
NC score	0.203479 (rank : 146)	θ value	0.62314 (rank : 111)
Query Neighborhood Hits	334	Target Neighborhood Hits	474	Shared Neighborhood Hits	213
SwissProt Accessions	Q9UBR4, Q9NZB5, Q9P0I8, Q9P0I9	Gene names	LHX3
Domain Architecture
Description	LIM/homeobox protein Lhx3.

IRX5_HUMAN
NC score	0.203196 (rank : 147)	θ value	0.0563607 (rank : 46)
Query Neighborhood Hits	334	Target Neighborhood Hits	362	Shared Neighborhood Hits	128
SwissProt Accessions	P78411, P78416, Q7Z2E1	Gene names	IRX5, IRX2A, IRXB2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2) (IRX-2A).

SIX6_MOUSE
NC score	0.202993 (rank : 148)	θ value	0.813845 (rank : 140)
Query Neighborhood Hits	334	Target Neighborhood Hits	267	Shared Neighborhood Hits	177
SwissProt Accessions	Q9QZ28, O88423	Gene names	Six6, Optx2, Six9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Six9 protein).

EMX1_HUMAN
NC score	0.202969 (rank : 149)	θ value	5.27518 (rank : 252)
Query Neighborhood Hits	334	Target Neighborhood Hits	336	Shared Neighborhood Hits	210
SwissProt Accessions	Q04741, Q86XB0	Gene names	EMX1
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty spiracles- like protein 1).

LBX1_MOUSE
NC score	0.202797 (rank : 150)	θ value	θ > 10 (rank : 414)
Query Neighborhood Hits	334	Target Neighborhood Hits	349	Shared Neighborhood Hits	204
SwissProt Accessions	P52955	Gene names	Lbx1, Lbx1h
Domain Architecture
Description	Transcription factor LBX1.

HXD12_HUMAN
NC score	0.201704 (rank : 151)	θ value	0.279714 (rank : 80)
Query Neighborhood Hits	334	Target Neighborhood Hits	334	Shared Neighborhood Hits	197
SwissProt Accessions	P35452, Q9NS03	Gene names	HOXD12, HOX4H
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4H).

IRX5_MOUSE
NC score	0.201545 (rank : 152)	θ value	0.0563607 (rank : 47)
Query Neighborhood Hits	334	Target Neighborhood Hits	324	Shared Neighborhood Hits	127
SwissProt Accessions	Q9JKQ4, Q80WV4, Q9JLL5	Gene names	Irx5, Irxb2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2).

HXD13_HUMAN
NC score	0.200174 (rank : 153)	θ value	3.0926 (rank : 222)
Query Neighborhood Hits	334	Target Neighborhood Hits	332	Shared Neighborhood Hits	203
SwissProt Accessions	P35453	Gene names	HOXD13, HOX4I
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4I).

HXD13_MOUSE
NC score	0.199977 (rank : 154)	θ value	3.0926 (rank : 223)
Query Neighborhood Hits	334	Target Neighborhood Hits	324	Shared Neighborhood Hits	202
SwissProt Accessions	P70217, Q2VPB0, Q2VPB1, Q64177	Gene names	Hoxd13, Hox-4.8
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4.8).

NKX23_MOUSE
NC score	0.199256 (rank : 155)	θ value	θ > 10 (rank : 431)
Query Neighborhood Hits	334	Target Neighborhood Hits	340	Shared Neighborhood Hits	205
SwissProt Accessions	P97334, Q9QZ60, Q9WV67	Gene names	Nkx2-3, Nkx-2.3, Nkx2c
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NK-2 homolog C) (Nkx2-C) (Homeobox protein NK-2 homolog 3).

BARH1_MOUSE
NC score	0.199117 (rank : 156)	θ value	1.38821 (rank : 165)
Query Neighborhood Hits	334	Target Neighborhood Hits	350	Shared Neighborhood Hits	207
SwissProt Accessions	P63157, Q9JK26	Gene names	Barhl1, Bhx1, Mbh2
Domain Architecture	No domain graphic available
Description	BarH-like 1 homeobox protein (Bar-class homeodomain protein MBH2) (BarH-related homeobox protein 1).

HESX1_HUMAN
NC score	0.198917 (rank : 157)	θ value	θ > 10 (rank : 351)
Query Neighborhood Hits	334	Target Neighborhood Hits	326	Shared Neighborhood Hits	193
SwissProt Accessions	Q9UBX0, Q99667	Gene names	HESX1, HANF
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (hAnf).

IRX3_MOUSE
NC score	0.198414 (rank : 158)	θ value	0.279714 (rank : 83)
Query Neighborhood Hits	334	Target Neighborhood Hits	303	Shared Neighborhood Hits	134
SwissProt Accessions	P81067	Gene names	Irx3, Irxb1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

LHX3_MOUSE
NC score	0.198322 (rank : 159)	θ value	1.06291 (rank : 152)
Query Neighborhood Hits	334	Target Neighborhood Hits	451	Shared Neighborhood Hits	204
SwissProt Accessions	P50481, Q61800, Q61801	Gene names	Lhx3, Lim-3, Lim3, Plim
Domain Architecture
Description	LIM/homeobox protein Lhx3 (Homeobox protein LIM-3) (Homeobox protein P-LIM) (LIM homeobox protein 3).

IRX3_HUMAN
NC score	0.198218 (rank : 160)	θ value	0.279714 (rank : 82)
Query Neighborhood Hits	334	Target Neighborhood Hits	342	Shared Neighborhood Hits	137
SwissProt Accessions	P78415, Q7Z4A4, Q7Z4A5, Q8IVC6	Gene names	IRX3, IRXB1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

NKX22_HUMAN
NC score	0.197972 (rank : 161)	θ value	0.813845 (rank : 133)
Query Neighborhood Hits	334	Target Neighborhood Hits	342	Shared Neighborhood Hits	206
SwissProt Accessions	O95096	Gene names	NKX2-2, NKX2.2, NKX2B
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

HXD12_MOUSE
NC score	0.197634 (rank : 162)	θ value	0.279714 (rank : 81)
Query Neighborhood Hits	334	Target Neighborhood Hits	370	Shared Neighborhood Hits	199
SwissProt Accessions	P23812	Gene names	Hoxd12, Hox-4.7, Hoxd-12
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4.7) (Hox-5.6).

HMX3_MOUSE
NC score	0.197541 (rank : 163)	θ value	2.36792 (rank : 203)
Query Neighborhood Hits	334	Target Neighborhood Hits	342	Shared Neighborhood Hits	206
SwissProt Accessions	P42581	Gene names	Hmx3, Nkx-5.1, Nkx5-1
Domain Architecture
Description	Homeobox protein HMX3 (Homeobox protein Nkx-5.1).

NKX12_MOUSE
NC score	0.197421 (rank : 164)	θ value	1.81305 (rank : 193)
Query Neighborhood Hits	334	Target Neighborhood Hits	332	Shared Neighborhood Hits	199
SwissProt Accessions	P42580, Q9JHF2, Q9JKW5, Q9JKW6, Q9JKW9, Q9JKX0, Q9JKX1	Gene names	Nkx1-2, Nkx1.1, Sax1
Domain Architecture
Description	NK1 transcription factor-related protein 2 (Homeobox protein SAX-1) (NKX-1.1).

BARX2_HUMAN
NC score	0.195964 (rank : 165)	θ value	3.0926 (rank : 212)
Query Neighborhood Hits	334	Target Neighborhood Hits	387	Shared Neighborhood Hits	201
SwissProt Accessions	Q9UMQ3, O43518	Gene names	BARX2
Domain Architecture
Description	Homeobox protein BarH-like 2.

BARX2_MOUSE
NC score	0.195733 (rank : 166)	θ value	4.03905 (rank : 229)
Query Neighborhood Hits	334	Target Neighborhood Hits	335	Shared Neighborhood Hits	199
SwissProt Accessions	O08686	Gene names	Barx2
Domain Architecture
Description	Homeobox protein BarH-like 2.

HESX1_MOUSE
NC score	0.195320 (rank : 167)	θ value	θ > 10 (rank : 352)
Query Neighborhood Hits	334	Target Neighborhood Hits	331	Shared Neighborhood Hits	192
SwissProt Accessions	Q61658, Q61047	Gene names	Hesx1, Hes-1, Rpx
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (Anterior- restricted homeobox protein) (Rathke pouch homeo box).

MEOX2_MOUSE
NC score	0.194400 (rank : 168)	θ value	0.813845 (rank : 132)
Query Neighborhood Hits	334	Target Neighborhood Hits	341	Shared Neighborhood Hits	200
SwissProt Accessions	P32443, Q544T6	Gene names	Meox2, Gax, Mox-2, Mox2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2).

MEOX2_HUMAN
NC score	0.194204 (rank : 169)	θ value	0.813845 (rank : 131)
Query Neighborhood Hits	334	Target Neighborhood Hits	340	Shared Neighborhood Hits	200
SwissProt Accessions	P50222, O75263, Q9UPL6	Gene names	MEOX2, GAX, MOX2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth arrest-specific homeobox).

IRX6_MOUSE
NC score	0.191682 (rank : 170)	θ value	0.163984 (rank : 66)
Query Neighborhood Hits	334	Target Neighborhood Hits	256	Shared Neighborhood Hits	146
SwissProt Accessions	Q9ER75	Gene names	Irx6, Irxb3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

NKX22_MOUSE
NC score	0.191086 (rank : 171)	θ value	4.03905 (rank : 239)
Query Neighborhood Hits	334	Target Neighborhood Hits	336	Shared Neighborhood Hits	206
SwissProt Accessions	P42586	Gene names	Nkx2-2, Nkx-2.2, Nkx2b
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

HHEX_MOUSE
NC score	0.189740 (rank : 172)	θ value	θ > 10 (rank : 354)
Query Neighborhood Hits	334	Target Neighborhood Hits	350	Shared Neighborhood Hits	201
SwissProt Accessions	P43120	Gene names	Hhex, Prhx
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

BSH_MOUSE
NC score	0.188972 (rank : 173)	θ value	θ > 10 (rank : 335)
Query Neighborhood Hits	334	Target Neighborhood Hits	349	Shared Neighborhood Hits	208
SwissProt Accessions	Q810B3	Gene names	Bsx
Domain Architecture	No domain graphic available
Description	Brain-specific homeobox protein homolog.

IRX1_HUMAN
NC score	0.188752 (rank : 174)	θ value	0.813845 (rank : 129)
Query Neighborhood Hits	334	Target Neighborhood Hits	285	Shared Neighborhood Hits	137
SwissProt Accessions	P78414, Q7Z2F8, Q8N312	Gene names	IRX1, IRXA1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

NKX31_MOUSE
NC score	0.188113 (rank : 175)	θ value	θ > 10 (rank : 436)
Query Neighborhood Hits	334	Target Neighborhood Hits	379	Shared Neighborhood Hits	198
SwissProt Accessions	P97436, O09087	Gene names	Nkx3-1, Nkx-3.1, Nkx3a
Domain Architecture
Description	Homeobox protein Nkx-3.1.

BARX1_HUMAN
NC score	0.186960 (rank : 176)	θ value	1.06291 (rank : 146)
Query Neighborhood Hits	334	Target Neighborhood Hits	326	Shared Neighborhood Hits	193
SwissProt Accessions	Q9HBU1	Gene names	BARX1
Domain Architecture
Description	Homeobox protein BarH-like 1.

NKX31_HUMAN
NC score	0.186939 (rank : 177)	θ value	θ > 10 (rank : 435)
Query Neighborhood Hits	334	Target Neighborhood Hits	331	Shared Neighborhood Hits	197
SwissProt Accessions	Q99801, O15465, Q9H2P4, Q9H2P5, Q9H2P6, Q9H2P7, Q9HBG0	Gene names	NKX3-1, NKX3.1, NKX3A
Domain Architecture
Description	Homeobox protein Nkx-3.1.

LMX1B_MOUSE
NC score	0.186672 (rank : 178)	θ value	θ > 10 (rank : 420)
Query Neighborhood Hits	334	Target Neighborhood Hits	394	Shared Neighborhood Hits	189
SwissProt Accessions	O88609	Gene names	Lmx1b
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

HXB2_HUMAN
NC score	0.186512 (rank : 179)	θ value	0.00035302 (rank : 11)
Query Neighborhood Hits	334	Target Neighborhood Hits	367	Shared Neighborhood Hits	197
SwissProt Accessions	P14652, P10913, P17485	Gene names	HOXB2, HOX2H
Domain Architecture
Description	Homeobox protein Hox-B2 (Hox-2H) (Hox-2.8) (K8).

GBX2_MOUSE
NC score	0.186480 (rank : 180)	θ value	0.62314 (rank : 107)
Query Neighborhood Hits	334	Target Neighborhood Hits	326	Shared Neighborhood Hits	184
SwissProt Accessions	P48031	Gene names	Gbx2, Mmoxa, Stra7
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2) (Homeobox protein STRA7).

NKX26_MOUSE
NC score	0.186154 (rank : 181)	θ value	θ > 10 (rank : 434)
Query Neighborhood Hits	334	Target Neighborhood Hits	343	Shared Neighborhood Hits	201
SwissProt Accessions	P43688	Gene names	Nkx2-6, Nkx-2.6, Nkx2f
Domain Architecture
Description	Homeobox protein Nkx-2.6 (Homeobox protein NK-2 homolog F).

GBX2_HUMAN
NC score	0.186103 (rank : 182)	θ value	0.62314 (rank : 106)
Query Neighborhood Hits	334	Target Neighborhood Hits	322	Shared Neighborhood Hits	184
SwissProt Accessions	P52951, O43833, Q53RX5, Q9Y5Y1	Gene names	GBX2
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2).

IRX1_MOUSE
NC score	0.185782 (rank : 183)	θ value	0.813845 (rank : 130)
Query Neighborhood Hits	334	Target Neighborhood Hits	269	Shared Neighborhood Hits	136
SwissProt Accessions	P81068, O55120, Q9JLL6	Gene names	Irx1, Irxa1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

EVX1_MOUSE
NC score	0.185438 (rank : 184)	θ value	8.99809 (rank : 317)
Query Neighborhood Hits	334	Target Neighborhood Hits	350	Shared Neighborhood Hits	198
SwissProt Accessions	P23683	Gene names	Evx1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

MSX3_MOUSE
NC score	0.184760 (rank : 185)	θ value	8.99809 (rank : 322)
Query Neighborhood Hits	334	Target Neighborhood Hits	330	Shared Neighborhood Hits	198
SwissProt Accessions	P70354, P70246, Q03360, Q80W10	Gene names	Msx3, Msx-3
Domain Architecture
Description	Homeobox protein MSX-3.

BARX1_MOUSE
NC score	0.184697 (rank : 186)	θ value	3.0926 (rank : 211)
Query Neighborhood Hits	334	Target Neighborhood Hits	324	Shared Neighborhood Hits	194
SwissProt Accessions	Q9ER42, O09066, P70159, Q9ERV2	Gene names	Barx1
Domain Architecture
Description	Homeobox protein BarH-like 1.

LMX1B_HUMAN
NC score	0.184418 (rank : 187)	θ value	θ > 10 (rank : 419)
Query Neighborhood Hits	334	Target Neighborhood Hits	404	Shared Neighborhood Hits	188
SwissProt Accessions	O60663, O75463	Gene names	LMX1B
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

PO6F1_MOUSE
NC score	0.183875 (rank : 188)	θ value	0.813845 (rank : 137)
Query Neighborhood Hits	334	Target Neighborhood Hits	581	Shared Neighborhood Hits	215
SwissProt Accessions	Q07916, Q91XK3	Gene names	Pou6f1, Emb
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (Octamer-binding transcription factor EMB) (Transcription regulatory protein MCP-1).

HHEX_HUMAN
NC score	0.183568 (rank : 189)	θ value	θ > 10 (rank : 353)
Query Neighborhood Hits	334	Target Neighborhood Hits	358	Shared Neighborhood Hits	196
SwissProt Accessions	Q03014	Gene names	HHEX, HEX, PRH, PRHX
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

NKX24_MOUSE
NC score	0.183237 (rank : 190)	θ value	θ > 10 (rank : 433)
Query Neighborhood Hits	334	Target Neighborhood Hits	356	Shared Neighborhood Hits	202
SwissProt Accessions	Q9EQM3, Q9EQM4	Gene names	Nkx2-4, Nkx2d
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

MSX2_HUMAN
NC score	0.182880 (rank : 191)	θ value	θ > 10 (rank : 429)
Query Neighborhood Hits	334	Target Neighborhood Hits	337	Shared Neighborhood Hits	202
SwissProt Accessions	P35548	Gene names	MSX2, HOX8
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8).

TITF1_HUMAN
NC score	0.182650 (rank : 192)	θ value	θ > 10 (rank : 491)
Query Neighborhood Hits	334	Target Neighborhood Hits	332	Shared Neighborhood Hits	203
SwissProt Accessions	P43699, O14954, O14955, Q9BRJ8	Gene names	TITF1, NKX2-1, NKX2A, TTF1
Domain Architecture
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1) (Homeobox protein NK-2 homolog A).

TITF1_MOUSE
NC score	0.182558 (rank : 193)	θ value	θ > 10 (rank : 492)
Query Neighborhood Hits	334	Target Neighborhood Hits	335	Shared Neighborhood Hits	203
SwissProt Accessions	P50220	Gene names	Titf1, Nkx-2.1, Nkx2-1, Ttf1
Domain Architecture	No domain graphic available
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1).

IRX4_MOUSE
NC score	0.182039 (rank : 194)	θ value	1.81305 (rank : 190)
Query Neighborhood Hits	334	Target Neighborhood Hits	286	Shared Neighborhood Hits	160
SwissProt Accessions	Q9QY61	Gene names	Irx4, Irxa3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

MSX2_MOUSE
NC score	0.181575 (rank : 195)	θ value	θ > 10 (rank : 430)
Query Neighborhood Hits	334	Target Neighborhood Hits	345	Shared Neighborhood Hits	200
SwissProt Accessions	Q03358, Q63856	Gene names	Msx2, Hox-8.1, Msx-2
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8.1).

PO6F2_HUMAN
NC score	0.181229 (rank : 196)	θ value	0.279714 (rank : 87)
Query Neighborhood Hits	334	Target Neighborhood Hits	618	Shared Neighborhood Hits	194
SwissProt Accessions	P78424, P78425, Q75ME8, Q86UM6, Q9UDS7	Gene names	POU6F2, RPF1
Domain Architecture
Description	POU domain, class 6, transcription factor 2 (Retina-derived POU-domain factor 1) (RPF-1).

HLX1_MOUSE
NC score	0.181069 (rank : 197)	θ value	θ > 10 (rank : 356)
Query Neighborhood Hits	334	Target Neighborhood Hits	362	Shared Neighborhood Hits	195
SwissProt Accessions	Q61670	Gene names	Hlx1, Hlx
Domain Architecture
Description	Homeobox protein HLX1.

TLX1_HUMAN
NC score	0.180891 (rank : 198)	θ value	5.27518 (rank : 272)
Query Neighborhood Hits	334	Target Neighborhood Hits	347	Shared Neighborhood Hits	206
SwissProt Accessions	P31314, O75699, Q9HCA0	Gene names	TLX1, HOX11, TCL3
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (TCL-3 proto-oncogene).

LMX1A_HUMAN
NC score	0.180821 (rank : 199)	θ value	4.03905 (rank : 236)
Query Neighborhood Hits	334	Target Neighborhood Hits	406	Shared Neighborhood Hits	192
SwissProt Accessions	Q8TE12, Q8TE11	Gene names	LMX1A
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

PO6F2_MOUSE
NC score	0.180788 (rank : 200)	θ value	0.21417 (rank : 76)
Query Neighborhood Hits	334	Target Neighborhood Hits	639	Shared Neighborhood Hits	204
SwissProt Accessions	Q8BJI4	Gene names	Pou6f2
Domain Architecture	No domain graphic available
Description	POU domain, class 6, transcription factor 2.

LMX1A_MOUSE
NC score	0.180779 (rank : 201)	θ value	4.03905 (rank : 237)
Query Neighborhood Hits	334	Target Neighborhood Hits	405	Shared Neighborhood Hits	190
SwissProt Accessions	Q9JKU8	Gene names	Lmx1a
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

NKX24_HUMAN
NC score	0.180775 (rank : 202)	θ value	θ > 10 (rank : 432)
Query Neighborhood Hits	334	Target Neighborhood Hits	366	Shared Neighborhood Hits	203
SwissProt Accessions	Q9H2Z4	Gene names	NKX2-4, NKX2D
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

PO6F1_HUMAN
NC score	0.180639 (rank : 203)	θ value	0.813845 (rank : 136)
Query Neighborhood Hits	334	Target Neighborhood Hits	370	Shared Neighborhood Hits	199
SwissProt Accessions	Q14863	Gene names	POU6F1, BRN5, MPOU, TCFB1
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (mPOU homeobox protein) (Brain-specific homeobox/POU domain protein 5) (Brain-5) (Brn-5 protein).

HXD3_MOUSE
NC score	0.180599 (rank : 204)	θ value	0.813845 (rank : 128)
Query Neighborhood Hits	334	Target Neighborhood Hits	435	Shared Neighborhood Hits	205
SwissProt Accessions	P09027, Q3UUD3	Gene names	Hoxd3, Hox-4.1, Hoxd-3
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4.1) (Homeobox protein MH-19).

IRX4_HUMAN
NC score	0.180171 (rank : 205)	θ value	1.81305 (rank : 189)
Query Neighborhood Hits	334	Target Neighborhood Hits	276	Shared Neighborhood Hits	162
SwissProt Accessions	P78413, Q9UHR2	Gene names	IRX4, IRXA3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

CDX4_MOUSE
NC score	0.180009 (rank : 206)	θ value	1.06291 (rank : 147)
Query Neighborhood Hits	334	Target Neighborhood Hits	378	Shared Neighborhood Hits	200
SwissProt Accessions	Q07424	Gene names	Cdx4, Cdx-4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

CDX4_HUMAN
NC score	0.179665 (rank : 207)	θ value	θ > 10 (rank : 339)
Query Neighborhood Hits	334	Target Neighborhood Hits	366	Shared Neighborhood Hits	201
SwissProt Accessions	O14627, Q5JS20	Gene names	CDX4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

EVX2_MOUSE
NC score	0.179508 (rank : 208)	θ value	θ > 10 (rank : 346)
Query Neighborhood Hits	334	Target Neighborhood Hits	327	Shared Neighborhood Hits	196
SwissProt Accessions	P49749	Gene names	Evx2, Evx-2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

EVX1_HUMAN
NC score	0.179179 (rank : 209)	θ value	8.99809 (rank : 316)
Query Neighborhood Hits	334	Target Neighborhood Hits	349	Shared Neighborhood Hits	197
SwissProt Accessions	P49640	Gene names	EVX1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

GBX1_HUMAN
NC score	0.179037 (rank : 210)	θ value	5.27518 (rank : 255)
Query Neighborhood Hits	334	Target Neighborhood Hits	334	Shared Neighborhood Hits	181
SwissProt Accessions	Q14549	Gene names	GBX1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

HLX1_HUMAN
NC score	0.179036 (rank : 211)	θ value	θ > 10 (rank : 355)
Query Neighborhood Hits	334	Target Neighborhood Hits	370	Shared Neighborhood Hits	197
SwissProt Accessions	Q14774, Q15988	Gene names	HLX1
Domain Architecture
Description	Homeobox protein HLX1 (Homeobox protein HB24).

MSX1_MOUSE
NC score	0.178931 (rank : 212)	θ value	θ > 10 (rank : 428)
Query Neighborhood Hits	334	Target Neighborhood Hits	322	Shared Neighborhood Hits	198
SwissProt Accessions	P13297	Gene names	Msx1, Hox7, Hox7.1
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7) (Hox- 7.1).

MSX1_HUMAN
NC score	0.178805 (rank : 213)	θ value	θ > 10 (rank : 427)
Query Neighborhood Hits	334	Target Neighborhood Hits	374	Shared Neighborhood Hits	200
SwissProt Accessions	P28360, Q96NY4	Gene names	MSX1, HOX7
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7).

GBX1_MOUSE
NC score	0.178231 (rank : 214)	θ value	5.27518 (rank : 256)
Query Neighborhood Hits	334	Target Neighborhood Hits	350	Shared Neighborhood Hits	180
SwissProt Accessions	P82976, Q8CGW5	Gene names	Gbx1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

TLX2_HUMAN
NC score	0.177996 (rank : 215)	θ value	θ > 10 (rank : 494)
Query Neighborhood Hits	334	Target Neighborhood Hits	352	Shared Neighborhood Hits	204
SwissProt Accessions	O43763, Q9UQ48	Gene names	TLX2, HOX11L1, NCX
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Neural crest homeobox protein).

TLX2_MOUSE
NC score	0.177981 (rank : 216)	θ value	θ > 10 (rank : 495)
Query Neighborhood Hits	334	Target Neighborhood Hits	336	Shared Neighborhood Hits	201
SwissProt Accessions	Q61663	Gene names	Tlx2, Hox11l1, Tlx1l1
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Homeobox TLX-2) (PMUR10F).

PBX4_MOUSE
NC score	0.177326 (rank : 217)	θ value	0.813845 (rank : 135)
Query Neighborhood Hits	334	Target Neighborhood Hits	324	Shared Neighborhood Hits	192
SwissProt Accessions	Q99NE9, Q8CFL2, Q99NE8	Gene names	Pbx4
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 4 (Homeobox protein PBX4).

EVX2_HUMAN
NC score	0.177277 (rank : 218)	θ value	θ > 10 (rank : 345)
Query Neighborhood Hits	334	Target Neighborhood Hits	325	Shared Neighborhood Hits	193
SwissProt Accessions	Q03828	Gene names	EVX2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

NKX32_MOUSE
NC score	0.176917 (rank : 219)	θ value	6.88961 (rank : 291)
Query Neighborhood Hits	334	Target Neighborhood Hits	326	Shared Neighborhood Hits	199
SwissProt Accessions	P97503	Gene names	Bapx1, Nkx-3.2, Nkx3-2, Nkx3b
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

HXD3_HUMAN
NC score	0.176816 (rank : 220)	θ value	0.813845 (rank : 127)
Query Neighborhood Hits	334	Target Neighborhood Hits	433	Shared Neighborhood Hits	202
SwissProt Accessions	P31249, Q99955, Q9BSC5	Gene names	HOXD3, HOX4A
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4A).

TLX1_MOUSE
NC score	0.176703 (rank : 221)	θ value	θ > 10 (rank : 493)
Query Neighborhood Hits	334	Target Neighborhood Hits	347	Shared Neighborhood Hits	205
SwissProt Accessions	P43345	Gene names	Tlx1, Hox11, Tlx-1
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (Homeobox TLX-1).

CDX1_HUMAN
NC score	0.176331 (rank : 222)	θ value	6.88961 (rank : 279)
Query Neighborhood Hits	334	Target Neighborhood Hits	382	Shared Neighborhood Hits	200
SwissProt Accessions	P47902, Q4VAU4, Q9NYK8	Gene names	CDX1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

HLXB9_MOUSE
NC score	0.176270 (rank : 223)	θ value	8.99809 (rank : 319)
Query Neighborhood Hits	334	Target Neighborhood Hits	354	Shared Neighborhood Hits	208
SwissProt Accessions	Q9QZW9	Gene names	Hlxb9
Domain Architecture
Description	Homeobox protein HB9.

HLXB9_HUMAN
NC score	0.175511 (rank : 224)	θ value	θ > 10 (rank : 357)
Query Neighborhood Hits	334	Target Neighborhood Hits	336	Shared Neighborhood Hits	205
SwissProt Accessions	P50219, Q9Y648	Gene names	HLXB9
Domain Architecture
Description	Homeobox protein HB9.

TLX3_MOUSE
NC score	0.174138 (rank : 225)	θ value	θ > 10 (rank : 497)
Query Neighborhood Hits	334	Target Neighborhood Hits	346	Shared Neighborhood Hits	206
SwissProt Accessions	O55144	Gene names	Tlx3, Hox11l2, Rnx, Tlx1l2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox TLX-3) (Homeobox protein Hox-11L2) (Respiratory neuron homeobox protein).

PBX2_MOUSE
NC score	0.173775 (rank : 226)	θ value	1.06291 (rank : 155)
Query Neighborhood Hits	334	Target Neighborhood Hits	341	Shared Neighborhood Hits	193
SwissProt Accessions	O35984	Gene names	Pbx2
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2).

PBX2_HUMAN
NC score	0.173581 (rank : 227)	θ value	1.06291 (rank : 154)
Query Neighborhood Hits	334	Target Neighborhood Hits	350	Shared Neighborhood Hits	194
SwissProt Accessions	P40425	Gene names	PBX2, G17
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2) (Protein G17).

HXA3_MOUSE
NC score	0.172813 (rank : 228)	θ value	3.0926 (rank : 220)
Query Neighborhood Hits	334	Target Neighborhood Hits	558	Shared Neighborhood Hits	214
SwissProt Accessions	P02831, Q4V9Z8, Q61197	Gene names	Hoxa3, Hox-1.5, Hoxa-3
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1.5) (MO-10).

NKX32_HUMAN
NC score	0.172744 (rank : 229)	θ value	6.88961 (rank : 290)
Query Neighborhood Hits	334	Target Neighborhood Hits	323	Shared Neighborhood Hits	199
SwissProt Accessions	P78367	Gene names	BAPX1, NKX3B
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

CDX1_MOUSE
NC score	0.172289 (rank : 230)	θ value	θ > 10 (rank : 336)
Query Neighborhood Hits	334	Target Neighborhood Hits	379	Shared Neighborhood Hits	195
SwissProt Accessions	P18111, Q8VCF7	Gene names	Cdx1, Cdx-1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

HXD11_HUMAN
NC score	0.171770 (rank : 231)	θ value	1.81305 (rank : 187)
Query Neighborhood Hits	334	Target Neighborhood Hits	353	Shared Neighborhood Hits	201
SwissProt Accessions	P31277, Q9NS02	Gene names	HOXD11, HOX4F
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4F).

PO2F1_HUMAN
NC score	0.171438 (rank : 232)	θ value	0.00390308 (rank : 14)
Query Neighborhood Hits	334	Target Neighborhood Hits	426	Shared Neighborhood Hits	203
SwissProt Accessions	P14859, Q5TBT7, Q6PK46, Q8NEU9, Q9BPV1	Gene names	POU2F1, OCT1, OTF1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

HXA1_MOUSE
NC score	0.171386 (rank : 233)	θ value	θ > 10 (rank : 365)
Query Neighborhood Hits	334	Target Neighborhood Hits	341	Shared Neighborhood Hits	205
SwissProt Accessions	P09022, P15463	Gene names	Hoxa1, Era-1, Hox-1.6, Hoxa-1
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399).

HXA3_HUMAN
NC score	0.171360 (rank : 234)	θ value	3.0926 (rank : 219)
Query Neighborhood Hits	334	Target Neighborhood Hits	535	Shared Neighborhood Hits	214
SwissProt Accessions	O43365	Gene names	HOXA3, HOX1E
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1E).

HXD11_MOUSE
NC score	0.171127 (rank : 235)	θ value	1.81305 (rank : 188)
Query Neighborhood Hits	334	Target Neighborhood Hits	376	Shared Neighborhood Hits	201
SwissProt Accessions	P23813	Gene names	Hoxd11, Hox-4.6, Hoxd-11
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5).

HXB1_HUMAN
NC score	0.170577 (rank : 236)	θ value	θ > 10 (rank : 378)
Query Neighborhood Hits	334	Target Neighborhood Hits	356	Shared Neighborhood Hits	206
SwissProt Accessions	P14653	Gene names	HOXB1, HOX2I
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2I).

HXA1_HUMAN
NC score	0.170370 (rank : 237)	θ value	θ > 10 (rank : 364)
Query Neighborhood Hits	334	Target Neighborhood Hits	334	Shared Neighborhood Hits	203
SwissProt Accessions	P49639, O43363	Gene names	HOXA1, HOX1F
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1F).

HXC12_HUMAN
NC score	0.170018 (rank : 238)	θ value	θ > 10 (rank : 394)
Query Neighborhood Hits	334	Target Neighborhood Hits	313	Shared Neighborhood Hits	190
SwissProt Accessions	P31275, Q9BXJ6	Gene names	HOXC12, HOX3F
Domain Architecture
Description	Homeobox protein Hox-C12 (Hox-3F).

HXB1_MOUSE
NC score	0.170000 (rank : 239)	θ value	θ > 10 (rank : 379)
Query Neighborhood Hits	334	Target Neighborhood Hits	341	Shared Neighborhood Hits	206
SwissProt Accessions	P17919, Q3ZAY6, Q9CYH3	Gene names	Hoxb1, Hox-2.9, Hoxb-1
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2.9).

DUX2_HUMAN
NC score	0.169066 (rank : 240)	θ value	θ > 10 (rank : 344)
Query Neighborhood Hits	334	Target Neighborhood Hits	173	Shared Neighborhood Hits	126
SwissProt Accessions	O75505	Gene names	DUX2
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 2.

GSH2_HUMAN
NC score	0.169008 (rank : 241)	θ value	θ > 10 (rank : 347)
Query Neighborhood Hits	334	Target Neighborhood Hits	324	Shared Neighborhood Hits	199
SwissProt Accessions	Q9BZM3	Gene names	GSH2
Domain Architecture
Description	Homeobox protein GSH-2.

TLX3_HUMAN
NC score	0.168148 (rank : 242)	θ value	θ > 10 (rank : 496)
Query Neighborhood Hits	334	Target Neighborhood Hits	403	Shared Neighborhood Hits	206
SwissProt Accessions	O43711, Q96AD3	Gene names	TLX3, HOX11L2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox protein Hox-11L2).

HXC12_MOUSE
NC score	0.168013 (rank : 243)	θ value	θ > 10 (rank : 395)
Query Neighborhood Hits	334	Target Neighborhood Hits	316	Shared Neighborhood Hits	190
SwissProt Accessions	Q8K5B8	Gene names	Hoxc12, Hox-3.8, Hoxc-12
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C12 (Hox-3.8).

CDX2_MOUSE
NC score	0.167733 (rank : 244)	θ value	θ > 10 (rank : 338)
Query Neighborhood Hits	334	Target Neighborhood Hits	336	Shared Neighborhood Hits	193
SwissProt Accessions	P43241	Gene names	Cdx2, Cdx-2
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2).

GSH2_MOUSE
NC score	0.167159 (rank : 245)	θ value	θ > 10 (rank : 348)
Query Neighborhood Hits	334	Target Neighborhood Hits	319	Shared Neighborhood Hits	198
SwissProt Accessions	P31316	Gene names	Gsh2, Gsh-2
Domain Architecture
Description	Homeobox protein GSH-2.

IPF1_MOUSE
NC score	0.166098 (rank : 246)	θ value	θ > 10 (rank : 412)
Query Neighborhood Hits	334	Target Neighborhood Hits	340	Shared Neighborhood Hits	200
SwissProt Accessions	P52946	Gene names	Ipf1, Pdx1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Islet/duodenum homeobox 1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Pancreas/duodenum homeobox 1).

IPF1_HUMAN
NC score	0.166086 (rank : 247)	θ value	θ > 10 (rank : 411)
Query Neighborhood Hits	334	Target Neighborhood Hits	330	Shared Neighborhood Hits	199
SwissProt Accessions	P52945, O60594	Gene names	IPF1, PDX1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Pancreas/duodenum homeobox 1) (PDX- 1) (Islet/duodenum homeobox-1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Insulin upstream factor 1) (IUF-1) (Glucose- sensitive factor) (GSF).

GSHI_MOUSE
NC score	0.165980 (rank : 248)	θ value	θ > 10 (rank : 350)
Query Neighborhood Hits	334	Target Neighborhood Hits	313	Shared Neighborhood Hits	196
SwissProt Accessions	P31315	Gene names	Gsh1, Gsh-1
Domain Architecture
Description	Homeobox protein GSH-1.

GSHI_HUMAN
NC score	0.165262 (rank : 249)	θ value	θ > 10 (rank : 349)
Query Neighborhood Hits	334	Target Neighborhood Hits	314	Shared Neighborhood Hits	198
SwissProt Accessions	Q9H4S2	Gene names	GSH1
Domain Architecture
Description	Homeobox protein GSH-1.

HXA11_HUMAN
NC score	0.164952 (rank : 250)	θ value	6.88961 (rank : 285)
Query Neighborhood Hits	334	Target Neighborhood Hits	334	Shared Neighborhood Hits	189
SwissProt Accessions	P31270	Gene names	HOXA11, HOX1I
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1I).

HXB2_MOUSE
NC score	0.164815 (rank : 251)	θ value	θ > 10 (rank : 380)
Query Neighborhood Hits	334	Target Neighborhood Hits	350	Shared Neighborhood Hits	193
SwissProt Accessions	P0C1T1	Gene names	Hoxb2, Hox-2.8
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-B2 (Hox-2.8).

HXC11_HUMAN
NC score	0.164454 (rank : 252)	θ value	θ > 10 (rank : 393)
Query Neighborhood Hits	334	Target Neighborhood Hits	349	Shared Neighborhood Hits	201
SwissProt Accessions	O43248, Q96DH2	Gene names	HOXC11
Domain Architecture
Description	Homeobox protein Hox-C11.

PBX1_HUMAN
NC score	0.164367 (rank : 253)	θ value	1.38821 (rank : 172)
Query Neighborhood Hits	334	Target Neighborhood Hits	317	Shared Neighborhood Hits	190
SwissProt Accessions	P40424	Gene names	PBX1, PRL
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1) (Homeobox protein PRL).

PBX1_MOUSE
NC score	0.164367 (rank : 254)	θ value	1.38821 (rank : 173)
Query Neighborhood Hits	334	Target Neighborhood Hits	317	Shared Neighborhood Hits	190
SwissProt Accessions	P41778	Gene names	Pbx1, Pbx-1
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1).

HXC4_MOUSE
NC score	0.164215 (rank : 255)	θ value	1.81305 (rank : 186)
Query Neighborhood Hits	334	Target Neighborhood Hits	365	Shared Neighborhood Hits	202
SwissProt Accessions	Q08624	Gene names	Hoxc4, Hox-3.5, Hoxc-4
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3.5).

CDX2_HUMAN
NC score	0.164203 (rank : 256)	θ value	θ > 10 (rank : 337)
Query Neighborhood Hits	334	Target Neighborhood Hits	330	Shared Neighborhood Hits	192
SwissProt Accessions	Q99626, O00503, Q969L8	Gene names	CDX2, CDX3
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2) (CDX-3).

HXA11_MOUSE
NC score	0.164044 (rank : 257)	θ value	6.88961 (rank : 286)
Query Neighborhood Hits	334	Target Neighborhood Hits	327	Shared Neighborhood Hits	189
SwissProt Accessions	P31311, Q3V026	Gene names	Hoxa11, Hox-1.9, Hoxa-11
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1.9).

HXB3_MOUSE
NC score	0.163031 (rank : 258)	θ value	θ > 10 (rank : 382)
Query Neighborhood Hits	334	Target Neighborhood Hits	493	Shared Neighborhood Hits	202
SwissProt Accessions	P09026, P10285, Q4PJ06, Q61680	Gene names	Hoxb3, Hox-2.7, Hoxb-3
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2.7) (Homeobox protein MH-23).

HXB3_HUMAN
NC score	0.162125 (rank : 259)	θ value	θ > 10 (rank : 381)
Query Neighborhood Hits	334	Target Neighborhood Hits	559	Shared Neighborhood Hits	207
SwissProt Accessions	P14651, O95615, P17484	Gene names	HOXB3, HOX2G
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7).

PBX3_MOUSE
NC score	0.161941 (rank : 260)	θ value	1.06291 (rank : 157)
Query Neighborhood Hits	334	Target Neighborhood Hits	306	Shared Neighborhood Hits	182
SwissProt Accessions	O35317, Q925W2	Gene names	Pbx3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX3_HUMAN
NC score	0.161928 (rank : 261)	θ value	1.06291 (rank : 156)
Query Neighborhood Hits	334	Target Neighborhood Hits	306	Shared Neighborhood Hits	182
SwissProt Accessions	P40426, Q96PF9, Q96PG0	Gene names	PBX3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

HXC4_HUMAN
NC score	0.161219 (rank : 262)	θ value	3.0926 (rank : 221)
Query Neighborhood Hits	334	Target Neighborhood Hits	361	Shared Neighborhood Hits	202
SwissProt Accessions	P09017	Gene names	HOXC4, HOX3E
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3E) (CP19).

HXD1_MOUSE
NC score	0.160131 (rank : 263)	θ value	θ > 10 (rank : 405)
Query Neighborhood Hits	334	Target Neighborhood Hits	381	Shared Neighborhood Hits	203
SwissProt Accessions	Q01822	Gene names	Hoxd1, Hox-4.9, Hoxd-1
Domain Architecture
Description	Homeobox protein Hox-D1 (Hox-4.9).

HXD1_HUMAN
NC score	0.159945 (rank : 264)	θ value	θ > 10 (rank : 404)
Query Neighborhood Hits	334	Target Neighborhood Hits	337	Shared Neighborhood Hits	203
SwissProt Accessions	Q9GZZ0	Gene names	HOXD1
Domain Architecture
Description	Homeobox protein Hox-D1.

HXD4_HUMAN
NC score	0.158259 (rank : 265)	θ value	5.27518 (rank : 261)
Query Neighborhood Hits	334	Target Neighborhood Hits	337	Shared Neighborhood Hits	193
SwissProt Accessions	P09016, Q96AU0	Gene names	HOXD4, HOX4B
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4B) (Hox-5.1) (HHO.C13).

HXB4_HUMAN
NC score	0.158097 (rank : 266)	θ value	5.27518 (rank : 259)
Query Neighborhood Hits	334	Target Neighborhood Hits	376	Shared Neighborhood Hits	202
SwissProt Accessions	P17483, Q9NTA0	Gene names	HOXB4, HOX2F
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2F) (Hox-2.6).

HXB4_MOUSE
NC score	0.157156 (rank : 267)	θ value	5.27518 (rank : 260)
Query Neighborhood Hits	334	Target Neighborhood Hits	375	Shared Neighborhood Hits	202
SwissProt Accessions	P10284, Q3UZB4, Q4VBG0	Gene names	Hoxb4, Hox-2.6, Hoxb-4
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2.6).

HXA2_MOUSE
NC score	0.156913 (rank : 268)	θ value	θ > 10 (rank : 367)
Query Neighborhood Hits	334	Target Neighborhood Hits	338	Shared Neighborhood Hits	194
SwissProt Accessions	P31245, Q149U3, Q920T8	Gene names	Hoxa2, Hox-1.11, Hoxa-2
Domain Architecture
Description	Homeobox protein Hox-A2 (Hox-1.11) (Hox1.11).

HXA2_HUMAN
NC score	0.156538 (rank : 269)	θ value	θ > 10 (rank : 366)
Query Neighborhood Hits	334	Target Neighborhood Hits	370	Shared Neighborhood Hits	194
SwissProt Accessions	O43364	Gene names	HOXA2
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A2.

HXA4_HUMAN
NC score	0.155533 (rank : 270)	θ value	θ > 10 (rank : 368)
Query Neighborhood Hits	334	Target Neighborhood Hits	370	Shared Neighborhood Hits	200
SwissProt Accessions	Q00056, O43366	Gene names	HOXA4, HOX1D
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4).

HXA4_MOUSE
NC score	0.155287 (rank : 271)	θ value	θ > 10 (rank : 369)
Query Neighborhood Hits	334	Target Neighborhood Hits	379	Shared Neighborhood Hits	200
SwissProt Accessions	P06798, Q61684, Q64388, Q8BPE6	Gene names	Hoxa4, Hox-1.4, Hoxa-4
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1.4) (Homeobox protein MH-3).

HXD8_MOUSE
NC score	0.152919 (rank : 272)	θ value	θ > 10 (rank : 408)
Query Neighborhood Hits	334	Target Neighborhood Hits	333	Shared Neighborhood Hits	201
SwissProt Accessions	P23463	Gene names	Hoxd8, Hox-4.3, Hoxd-8
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4).

HXB8_HUMAN
NC score	0.152733 (rank : 273)	θ value	6.88961 (rank : 287)
Query Neighborhood Hits	334	Target Neighborhood Hits	324	Shared Neighborhood Hits	201
SwissProt Accessions	P17481, Q9H1I2	Gene names	HOXB8, HOX2D
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4).

HXB8_MOUSE
NC score	0.152697 (rank : 274)	θ value	6.88961 (rank : 288)
Query Neighborhood Hits	334	Target Neighborhood Hits	325	Shared Neighborhood Hits	202
SwissProt Accessions	P09632	Gene names	Hoxb8, Hox-2.4, Hoxb-8
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2.4).

HXD4_MOUSE
NC score	0.152409 (rank : 275)	θ value	θ > 10 (rank : 406)
Query Neighborhood Hits	334	Target Neighborhood Hits	339	Shared Neighborhood Hits	190
SwissProt Accessions	P10628, P97451, Q3UXL6	Gene names	Hoxd4, Hox-4.2, Hoxd-4
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4.2) (Hox-5.1).

HXC8_MOUSE
NC score	0.150192 (rank : 276)	θ value	8.99809 (rank : 321)
Query Neighborhood Hits	334	Target Neighborhood Hits	327	Shared Neighborhood Hits	201
SwissProt Accessions	P09025	Gene names	Hoxc8, Hox-3.1, Hoxc-8
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3.1) (M31).

HXC8_HUMAN
NC score	0.150179 (rank : 277)	θ value	8.99809 (rank : 320)
Query Neighborhood Hits	334	Target Neighborhood Hits	327	Shared Neighborhood Hits	201
SwissProt Accessions	P31273, O15221, O15362	Gene names	HOXC8, HOX3A
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3A).

HXB7_MOUSE
NC score	0.149989 (rank : 278)	θ value	θ > 10 (rank : 388)
Query Neighborhood Hits	334	Target Neighborhood Hits	314	Shared Neighborhood Hits	193
SwissProt Accessions	P09024, Q3UW15	Gene names	Hoxb7, Hox-2.3, Hoxb-7
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2.3) (MUB1) (Homeobox protein MH-22B).

HXD8_HUMAN
NC score	0.149977 (rank : 279)	θ value	θ > 10 (rank : 407)
Query Neighborhood Hits	334	Target Neighborhood Hits	338	Shared Neighborhood Hits	201
SwissProt Accessions	P13378	Gene names	HOXD8, HOX4E
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4).

HXB7_HUMAN
NC score	0.149198 (rank : 280)	θ value	θ > 10 (rank : 387)
Query Neighborhood Hits	334	Target Neighborhood Hits	311	Shared Neighborhood Hits	193
SwissProt Accessions	P09629, Q15957	Gene names	HOXB7, HOX2C
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2C) (HHO.C1).

HXA7_MOUSE
NC score	0.148938 (rank : 281)	θ value	θ > 10 (rank : 375)
Query Neighborhood Hits	334	Target Neighborhood Hits	318	Shared Neighborhood Hits	195
SwissProt Accessions	P02830, Q544P0	Gene names	Hoxa7, Hox-1.1, Hoxa-7
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1.1) (M6-12) (M6).

HXC5_HUMAN
NC score	0.148022 (rank : 282)	θ value	θ > 10 (rank : 396)
Query Neighborhood Hits	334	Target Neighborhood Hits	316	Shared Neighborhood Hits	192
SwissProt Accessions	Q00444	Gene names	HOXC5, HOX3D
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3D) (CP11).

HXC5_MOUSE
NC score	0.147858 (rank : 283)	θ value	θ > 10 (rank : 397)
Query Neighborhood Hits	334	Target Neighborhood Hits	316	Shared Neighborhood Hits	191
SwissProt Accessions	P32043, Q8BJW4	Gene names	Hoxc5, Hox-3.4, Hoxc-5
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3.4) (Hox-6.2).

HXA9_MOUSE
NC score	0.146659 (rank : 284)	θ value	θ > 10 (rank : 377)
Query Neighborhood Hits	334	Target Neighborhood Hits	334	Shared Neighborhood Hits	202
SwissProt Accessions	P09631, O70154, O70155	Gene names	Hoxa9, Hox-1.7, Hoxa-9
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1.7).

HXA9_HUMAN
NC score	0.146390 (rank : 285)	θ value	θ > 10 (rank : 376)
Query Neighborhood Hits	334	Target Neighborhood Hits	332	Shared Neighborhood Hits	202
SwissProt Accessions	P31269, O43369, O43429, Q99820	Gene names	HOXA9, HOX1G
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1G).

HXA6_HUMAN
NC score	0.146260 (rank : 286)	θ value	θ > 10 (rank : 372)
Query Neighborhood Hits	334	Target Neighborhood Hits	309	Shared Neighborhood Hits	198
SwissProt Accessions	P31267, Q9UPM0	Gene names	HOXA6, HOX1B
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A6 (Hox-1B).

HXB6_MOUSE
NC score	0.146058 (rank : 287)	θ value	θ > 10 (rank : 386)
Query Neighborhood Hits	334	Target Neighborhood Hits	309	Shared Neighborhood Hits	194
SwissProt Accessions	P09023	Gene names	Hoxb6, Hox-2.2, Hoxb-6
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2.2) (Homeobox protein MH-22A).

HXB6_HUMAN
NC score	0.146022 (rank : 288)	θ value	θ > 10 (rank : 385)
Query Neighborhood Hits	334	Target Neighborhood Hits	307	Shared Neighborhood Hits	194
SwissProt Accessions	P17509, P09068, Q9HB11, Q9UGH2	Gene names	HOXB6, HOX2B
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2).

HXA7_HUMAN
NC score	0.145876 (rank : 289)	θ value	θ > 10 (rank : 374)
Query Neighborhood Hits	334	Target Neighborhood Hits	309	Shared Neighborhood Hits	193
SwissProt Accessions	P31268, O43368, O43486, O95655, Q9NSC8, Q9UDM1	Gene names	HOXA7, HOX1A
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1).

HXC10_MOUSE
NC score	0.145863 (rank : 290)	θ value	θ > 10 (rank : 392)
Query Neighborhood Hits	334	Target Neighborhood Hits	417	Shared Neighborhood Hits	200
SwissProt Accessions	P31257, P31312, Q7TMT7	Gene names	Hoxc10, Hox-3.6, Hoxc-10
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C10 (Hox-3.6).

HXC10_HUMAN
NC score	0.145443 (rank : 291)	θ value	θ > 10 (rank : 391)
Query Neighborhood Hits	334	Target Neighborhood Hits	417	Shared Neighborhood Hits	201
SwissProt Accessions	Q9NYD6, O15219, O15220, Q9BVD5	Gene names	HOXC10
Domain Architecture
Description	Homeobox protein Hox-C10.

HXA6_MOUSE
NC score	0.145285 (rank : 292)	θ value	θ > 10 (rank : 373)
Query Neighborhood Hits	334	Target Neighborhood Hits	304	Shared Neighborhood Hits	193
SwissProt Accessions	P09092, Q9JI98	Gene names	Hoxa6, Hox-1.2, Hoxa-6
Domain Architecture
Description	Homeobox protein Hox-A6 (Hox-1.2) (M5-4).

HXA5_MOUSE
NC score	0.145032 (rank : 293)	θ value	θ > 10 (rank : 371)
Query Neighborhood Hits	334	Target Neighborhood Hits	338	Shared Neighborhood Hits	194
SwissProt Accessions	P09021, Q91VQ5	Gene names	Hoxa5, Hox-1.3, Hoxa-5
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1.3) (M2).

HXA5_HUMAN
NC score	0.144988 (rank : 294)	θ value	θ > 10 (rank : 370)
Query Neighborhood Hits	334	Target Neighborhood Hits	336	Shared Neighborhood Hits	195
SwissProt Accessions	P20719, O43367, Q96CY6	Gene names	HOXA5, HOX1C
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1C).

HXB9_HUMAN
NC score	0.144806 (rank : 295)	θ value	θ > 10 (rank : 389)
Query Neighborhood Hits	334	Target Neighborhood Hits	344	Shared Neighborhood Hits	199
SwissProt Accessions	P17482, Q9H1I1	Gene names	HOXB9, HOX2E
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5).

HXB9_MOUSE
NC score	0.144532 (rank : 296)	θ value	θ > 10 (rank : 390)
Query Neighborhood Hits	334	Target Neighborhood Hits	344	Shared Neighborhood Hits	198
SwissProt Accessions	P20615	Gene names	Hoxb9, Hox-2.5, Hoxb-9
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2.5).

HXB5_HUMAN
NC score	0.143957 (rank : 297)	θ value	θ > 10 (rank : 383)
Query Neighborhood Hits	334	Target Neighborhood Hits	332	Shared Neighborhood Hits	195
SwissProt Accessions	P09067, P09069	Gene names	HOXB5, HOX2A
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2A) (HHO.C10) (HU-1).

HXB5_MOUSE
NC score	0.143818 (rank : 298)	θ value	θ > 10 (rank : 384)
Query Neighborhood Hits	334	Target Neighborhood Hits	337	Shared Neighborhood Hits	196
SwissProt Accessions	P09079, Q3ZAY8	Gene names	Hoxb5, Hox-2.1, Hoxb-5
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2.1) (MU-1) (H24.1).

HXC6_HUMAN
NC score	0.143123 (rank : 299)	θ value	θ > 10 (rank : 398)
Query Neighborhood Hits	334	Target Neighborhood Hits	306	Shared Neighborhood Hits	191
SwissProt Accessions	P09630	Gene names	HOXC6, HOX3C
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3C) (HHO.C8) (CP25).

HXC6_MOUSE
NC score	0.143123 (rank : 300)	θ value	θ > 10 (rank : 399)
Query Neighborhood Hits	334	Target Neighborhood Hits	306	Shared Neighborhood Hits	191
SwissProt Accessions	P10629, Q61683	Gene names	Hoxc6, Hox-3.3, Hoxc-6
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3.3) (Hox-6.1).

HXD10_HUMAN
NC score	0.143032 (rank : 301)	θ value	θ > 10 (rank : 402)
Query Neighborhood Hits	334	Target Neighborhood Hits	392	Shared Neighborhood Hits	204
SwissProt Accessions	P28358	Gene names	HOXD10, HOX4D
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4D) (Hox-4E).

HXD10_MOUSE
NC score	0.143022 (rank : 302)	θ value	θ > 10 (rank : 403)
Query Neighborhood Hits	334	Target Neighborhood Hits	392	Shared Neighborhood Hits	202
SwissProt Accessions	P28359, Q91WU9	Gene names	Hoxd10, Hox-4.5, Hoxd-10
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4.5) (Hox-5.3).

HXD9_HUMAN
NC score	0.142883 (rank : 303)	θ value	θ > 10 (rank : 409)
Query Neighborhood Hits	334	Target Neighborhood Hits	352	Shared Neighborhood Hits	202
SwissProt Accessions	P28356	Gene names	HOXD9, HOX4C
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2).

HXD9_MOUSE
NC score	0.141534 (rank : 304)	θ value	θ > 10 (rank : 410)
Query Neighborhood Hits	334	Target Neighborhood Hits	359	Shared Neighborhood Hits	201
SwissProt Accessions	P28357, Q3UYS2	Gene names	Hoxd9, Hox-4.4, Hoxd-9
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4.4) (Hox-5.2).

HXC9_HUMAN
NC score	0.139855 (rank : 305)	θ value	θ > 10 (rank : 400)
Query Neighborhood Hits	334	Target Neighborhood Hits	339	Shared Neighborhood Hits	198
SwissProt Accessions	P31274, Q9H1I0	Gene names	HOXC9, HOX3B
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3B).

HXC9_MOUSE
NC score	0.139844 (rank : 306)	θ value	θ > 10 (rank : 401)
Query Neighborhood Hits	334	Target Neighborhood Hits	338	Shared Neighborhood Hits	198
SwissProt Accessions	P09633	Gene names	Hoxc9, Hox-3.2, Hoxc-9
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3.2).

PO2F1_MOUSE
NC score	0.139467 (rank : 307)	θ value	0.62314 (rank : 116)
Query Neighborhood Hits	334	Target Neighborhood Hits	408	Shared Neighborhood Hits	188
SwissProt Accessions	P25425, Q61994, Q63891, Q6Y681, Q7TSD0, Q8BT04, Q8K570, Q99JH0, Q9WTZ4, Q9WTZ5, Q9WTZ6	Gene names	Pou2f1, Oct-1, Otf-1, Otf1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

HXA10_HUMAN
NC score	0.139431 (rank : 308)	θ value	θ > 10 (rank : 362)
Query Neighborhood Hits	334	Target Neighborhood Hits	334	Shared Neighborhood Hits	192
SwissProt Accessions	P31260, O43370, O43605, Q15949	Gene names	HOXA10, HOX1H
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL).

HXA10_MOUSE
NC score	0.138487 (rank : 309)	θ value	θ > 10 (rank : 363)
Query Neighborhood Hits	334	Target Neighborhood Hits	365	Shared Neighborhood Hits	192
SwissProt Accessions	P31310, Q80Y22	Gene names	Hoxa10, Hox-1.8, Hoxa-10
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1.8).

TRPS1_HUMAN
NC score	0.136766 (rank : 310)	θ value	0.0113563 (rank : 22)
Query Neighborhood Hits	334	Target Neighborhood Hits	539	Shared Neighborhood Hits	51
SwissProt Accessions	Q9UHF7, Q9NWE1, Q9UHH6	Gene names	TRPS1
Domain Architecture
Description	Zinc finger transcription factor Trps1 (Zinc finger protein GC79) (Tricho-rhino-phalangeal syndrome type I protein).

PO2F3_MOUSE
NC score	0.130505 (rank : 311)	θ value	θ > 10 (rank : 460)
Query Neighborhood Hits	334	Target Neighborhood Hits	328	Shared Neighborhood Hits	186
SwissProt Accessions	P31362	Gene names	Pou2f3, Epoc1, Oct11, Otf-11, Otf11
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Epoc-1).

PO2F3_HUMAN
NC score	0.128927 (rank : 312)	θ value	θ > 10 (rank : 459)
Query Neighborhood Hits	334	Target Neighborhood Hits	319	Shared Neighborhood Hits	184
SwissProt Accessions	Q9UKI9, Q9UKR7, Q9Y504	Gene names	POU2F3, OTF11, PLA1
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Transcription factor Skn-1) (PLA-1 protein).

PIT1_MOUSE
NC score	0.122884 (rank : 313)	θ value	θ > 10 (rank : 456)
Query Neighborhood Hits	334	Target Neighborhood Hits	313	Shared Neighborhood Hits	184
SwissProt Accessions	Q00286	Gene names	Pou1f1, Pit-1, Pit1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

PIT1_HUMAN
NC score	0.120875 (rank : 314)	θ value	θ > 10 (rank : 455)
Query Neighborhood Hits	334	Target Neighborhood Hits	292	Shared Neighborhood Hits	176
SwissProt Accessions	P28069, O75757, Q15132, Q15133, Q9UEL3	Gene names	POU1F1, GHF1, PIT1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

PO2F2_MOUSE
NC score	0.120264 (rank : 315)	θ value	6.88961 (rank : 294)
Query Neighborhood Hits	334	Target Neighborhood Hits	353	Shared Neighborhood Hits	180
SwissProt Accessions	Q00196, Q00197, Q00198, Q00199, Q00200, Q00201, Q05882, Q61995, Q61996, Q64245	Gene names	Pou2f2, Oct2, Otf2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

TF2LX_HUMAN
NC score	0.120094 (rank : 316)	θ value	θ > 10 (rank : 484)
Query Neighborhood Hits	334	Target Neighborhood Hits	108	Shared Neighborhood Hits	59
SwissProt Accessions	Q8IUE1	Gene names	TGIF2LX, TGIFLX
Domain Architecture
Description	Homeobox protein TGIF2LX (TGFB-induced factor 2-like protein, X- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the X).

HOP_HUMAN
NC score	0.119382 (rank : 317)	θ value	θ > 10 (rank : 360)
Query Neighborhood Hits	334	Target Neighborhood Hits	107	Shared Neighborhood Hits	74
SwissProt Accessions	Q9BPY8, Q8N0V6, Q96CI1	Gene names	HOP, HOD, LAGY, NECC1, OB1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Lung cancer-associated Y protein) (Odd homeobox protein 1) (Not expressed in choriocarcinoma protein 1).

PO2F2_HUMAN
NC score	0.117978 (rank : 318)	θ value	6.88961 (rank : 293)
Query Neighborhood Hits	334	Target Neighborhood Hits	379	Shared Neighborhood Hits	181
SwissProt Accessions	P09086, Q16648, Q9BRS4	Gene names	POU2F2, OCT2, OTF2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

PO3F3_HUMAN
NC score	0.115543 (rank : 319)	θ value	6.88961 (rank : 297)
Query Neighborhood Hits	334	Target Neighborhood Hits	311	Shared Neighborhood Hits	184
SwissProt Accessions	P20264, P78379	Gene names	POU3F3, BRN1, OTF8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

PO3F3_MOUSE
NC score	0.115520 (rank : 320)	θ value	6.88961 (rank : 298)
Query Neighborhood Hits	334	Target Neighborhood Hits	308	Shared Neighborhood Hits	184
SwissProt Accessions	P31361	Gene names	Pou3f3, Brn-1, Brn1, Otf8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

TRPS1_MOUSE
NC score	0.115463 (rank : 321)	θ value	0.0113563 (rank : 23)
Query Neighborhood Hits	334	Target Neighborhood Hits	609	Shared Neighborhood Hits	55
SwissProt Accessions	Q925H1	Gene names	Trps1
Domain Architecture
Description	Zinc finger transcription factor Trps1.

HOP_MOUSE
NC score	0.112255 (rank : 322)	θ value	θ > 10 (rank : 361)
Query Neighborhood Hits	334	Target Neighborhood Hits	102	Shared Neighborhood Hits	70
SwissProt Accessions	Q8R1H0, Q8C1N5, Q8CJ22	Gene names	Hop, Hod, Ob1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Homeobox-only protein) (Odd homeobox protein 1) (mOB1).

PO3F2_HUMAN
NC score	0.111193 (rank : 323)	θ value	6.88961 (rank : 295)
Query Neighborhood Hits	334	Target Neighborhood Hits	308	Shared Neighborhood Hits	184
SwissProt Accessions	P20265, Q14960, Q86V54, Q9UJL0	Gene names	POU3F2, BRN2, OCT7, OTF7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

PO3F2_MOUSE
NC score	0.111192 (rank : 324)	θ value	6.88961 (rank : 296)
Query Neighborhood Hits	334	Target Neighborhood Hits	313	Shared Neighborhood Hits	184
SwissProt Accessions	P31360	Gene names	Pou3f2, Brn-2, Brn2, Otf7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

PKNX1_MOUSE
NC score	0.111145 (rank : 325)	θ value	0.0431538 (rank : 41)
Query Neighborhood Hits	334	Target Neighborhood Hits	103	Shared Neighborhood Hits	60
SwissProt Accessions	O70477	Gene names	Pknox1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1).

TF2LY_HUMAN
NC score	0.109759 (rank : 326)	θ value	θ > 10 (rank : 485)
Query Neighborhood Hits	334	Target Neighborhood Hits	90	Shared Neighborhood Hits	54
SwissProt Accessions	Q8IUE0	Gene names	TGIF2LY, TGIFLY
Domain Architecture
Description	Homeobox protein TGIF2LY (TGFB-induced factor 2-like protein, Y- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the Y).

PO4F1_MOUSE
NC score	0.109176 (rank : 327)	θ value	θ > 10 (rank : 466)
Query Neighborhood Hits	334	Target Neighborhood Hits	345	Shared Neighborhood Hits	178
SwissProt Accessions	P17208	Gene names	Pou4f1, Brn-3, Brn3, Brn3a
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Brn-3.0).

PO4F1_HUMAN
NC score	0.107981 (rank : 328)	θ value	θ > 10 (rank : 465)
Query Neighborhood Hits	334	Target Neighborhood Hits	342	Shared Neighborhood Hits	178
SwissProt Accessions	Q01851, Q14986, Q15318	Gene names	POU4F1, BRN3A, RDC1
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Oct-T1) (Homeobox/POU domain protein RDC-1).

PO3F1_MOUSE
NC score	0.107615 (rank : 329)	θ value	θ > 10 (rank : 462)
Query Neighborhood Hits	334	Target Neighborhood Hits	261	Shared Neighborhood Hits	164
SwissProt Accessions	P21952	Gene names	Pou3f1, Oct6, Otf-6, Otf6, Scip
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

PO3F1_HUMAN
NC score	0.106072 (rank : 330)	θ value	θ > 10 (rank : 461)
Query Neighborhood Hits	334	Target Neighborhood Hits	256	Shared Neighborhood Hits	163
SwissProt Accessions	Q03052	Gene names	POU3F1, OCT6, OTF6
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

PO4F2_MOUSE
NC score	0.105831 (rank : 331)	θ value	θ > 10 (rank : 468)
Query Neighborhood Hits	334	Target Neighborhood Hits	312	Shared Neighborhood Hits	176
SwissProt Accessions	Q63934, Q63954	Gene names	Pou4f2, Brn3b
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B) (Brn-3.2).

PO4F2_HUMAN
NC score	0.105579 (rank : 332)	θ value	θ > 10 (rank : 467)
Query Neighborhood Hits	334	Target Neighborhood Hits	310	Shared Neighborhood Hits	176
SwissProt Accessions	Q12837, Q13883, Q14987	Gene names	POU4F2, BRN3B
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B).

PO4F3_HUMAN
NC score	0.103942 (rank : 333)	θ value	θ > 10 (rank : 469)
Query Neighborhood Hits	334	Target Neighborhood Hits	307	Shared Neighborhood Hits	174
SwissProt Accessions	Q15319, O60557	Gene names	POU4F3, BRN3C
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

PO4F3_MOUSE
NC score	0.103894 (rank : 334)	θ value	θ > 10 (rank : 470)
Query Neighborhood Hits	334	Target Neighborhood Hits	311	Shared Neighborhood Hits	174
SwissProt Accessions	Q63955	Gene names	Pou4f3, Brn-3c, Brn3c
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

PO5F1_MOUSE
NC score	0.100654 (rank : 335)	θ value	3.0926 (rank : 225)
Query Neighborhood Hits	334	Target Neighborhood Hits	305	Shared Neighborhood Hits	165
SwissProt Accessions	P20263, Q63843	Gene names	Pou5f1, Oct-3, Oct-4, Otf-3, Otf3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4) (NF-A3).

PO5F1_HUMAN
NC score	0.100395 (rank : 336)	θ value	8.99809 (rank : 325)
Query Neighborhood Hits	334	Target Neighborhood Hits	321	Shared Neighborhood Hits	173
SwissProt Accessions	Q01860, P31359, Q15167, Q15168, Q16422	Gene names	POU5F1, OCT3, OCT4, OTF3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4).

PKNX1_HUMAN
NC score	0.099813 (rank : 337)	θ value	1.81305 (rank : 194)
Query Neighborhood Hits	334	Target Neighborhood Hits	101	Shared Neighborhood Hits	58
SwissProt Accessions	P55347, O00528, Q8IWT7	Gene names	PKNOX1, PREP1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1) (Homeobox protein PREP-1).

PO3F4_MOUSE
NC score	0.091098 (rank : 338)	θ value	θ > 10 (rank : 464)
Query Neighborhood Hits	334	Target Neighborhood Hits	281	Shared Neighborhood Hits	169
SwissProt Accessions	P62515, P25216	Gene names	Pou3f4, Brn-4, Brn4, Otf9
Domain Architecture	No domain graphic available
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

PO3F4_HUMAN
NC score	0.090689 (rank : 339)	θ value	θ > 10 (rank : 463)
Query Neighborhood Hits	334	Target Neighborhood Hits	297	Shared Neighborhood Hits	169
SwissProt Accessions	P49335, Q5H9G9, Q99410	Gene names	POU3F4, BRN4, OTF9
Domain Architecture
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

CUTL1_MOUSE
NC score	0.087087 (rank : 340)	θ value	1.38821 (rank : 166)
Query Neighborhood Hits	334	Target Neighborhood Hits	1620	Shared Neighborhood Hits	184
SwissProt Accessions	P53564, O08994, P70301, Q571L6, Q91ZD2	Gene names	Cutl1, Cux, Cux1, Kiaa4047
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP) (Homeobox protein Cux).

CUTL1_HUMAN
NC score	0.082489 (rank : 341)	θ value	1.81305 (rank : 183)
Query Neighborhood Hits	334	Target Neighborhood Hits	1574	Shared Neighborhood Hits	166
SwissProt Accessions	P39880, Q6NYH4, Q9UEV5	Gene names	CUTL1
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP).

TGIF2_MOUSE
NC score	0.080891 (rank : 342)	θ value	θ > 10 (rank : 487)
Query Neighborhood Hits	334	Target Neighborhood Hits	127	Shared Neighborhood Hits	59
SwissProt Accessions	Q8C0Y1	Gene names	Tgif2
Domain Architecture	No domain graphic available
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

ADNP_HUMAN
NC score	0.080129 (rank : 343)	θ value	0.21417 (rank : 68)
Query Neighborhood Hits	334	Target Neighborhood Hits	265	Shared Neighborhood Hits	52
SwissProt Accessions	Q9H2P0, O94881, Q9UG34	Gene names	ADNP, KIAA0784
Domain Architecture
Description	Activity-dependent neuroprotector (Activity-dependent neuroprotective protein).

MEIS2_HUMAN
NC score	0.079982 (rank : 344)	θ value	θ > 10 (rank : 423)
Query Neighborhood Hits	334	Target Neighborhood Hits	182	Shared Neighborhood Hits	95
SwissProt Accessions	O14770, Q96KI4, Q96KI5, Q9NRS1, Q9NRS2, Q9NRS3	Gene names	MEIS2, MRG1
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

MEIS2_MOUSE
NC score	0.079293 (rank : 345)	θ value	θ > 10 (rank : 424)
Query Neighborhood Hits	334	Target Neighborhood Hits	208	Shared Neighborhood Hits	95
SwissProt Accessions	P97367, O35676, O35677, P97403, P97404	Gene names	Meis2, Mrg1, Stra10
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

TGIF2_HUMAN
NC score	0.078791 (rank : 346)	θ value	θ > 10 (rank : 486)
Query Neighborhood Hits	334	Target Neighborhood Hits	94	Shared Neighborhood Hits	49
SwissProt Accessions	Q9GZN2	Gene names	TGIF2
Domain Architecture
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

MEIS3_HUMAN
NC score	0.077284 (rank : 347)	θ value	θ > 10 (rank : 425)
Query Neighborhood Hits	334	Target Neighborhood Hits	118	Shared Neighborhood Hits	85
SwissProt Accessions	Q99687, Q6NT73, Q8TC66, Q9NPW2	Gene names	MEIS3, MRG2
Domain Architecture	No domain graphic available
Description	Homeobox protein Meis3 (Meis1-related protein 2).

MEIS1_MOUSE
NC score	0.076985 (rank : 348)	θ value	θ > 10 (rank : 422)
Query Neighborhood Hits	334	Target Neighborhood Hits	115	Shared Neighborhood Hits	88
SwissProt Accessions	Q60954, Q5SVC8, Q60955, Q8CIL0	Gene names	Meis1
Domain Architecture
Description	Homeobox protein Meis1 (Myeloid ecotropic viral integration site 1).

MEIS1_HUMAN
NC score	0.076979 (rank : 349)	θ value	θ > 10 (rank : 421)
Query Neighborhood Hits	334	Target Neighborhood Hits	115	Shared Neighborhood Hits	88
SwissProt Accessions	O00470	Gene names	MEIS1
Domain Architecture
Description	Homeobox protein Meis1.

MEIS3_MOUSE
NC score	0.075390 (rank : 350)	θ value	θ > 10 (rank : 426)
Query Neighborhood Hits	334	Target Neighborhood Hits	118	Shared Neighborhood Hits	82
SwissProt Accessions	P97368, Q99L81	Gene names	Meis3, Mrg2
Domain Architecture
Description	Homeobox protein Meis3 (Meis1-related protein 2).

PKNX2_MOUSE
NC score	0.075055 (rank : 351)	θ value	θ > 10 (rank : 458)
Query Neighborhood Hits	334	Target Neighborhood Hits	197	Shared Neighborhood Hits	72
SwissProt Accessions	Q8BG99, Q8R4B0	Gene names	Pknox2, Prep2
Domain Architecture	No domain graphic available
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

ZN462_HUMAN
NC score	0.073002 (rank : 352)	θ value	0.00509761 (rank : 16)
Query Neighborhood Hits	334	Target Neighborhood Hits	740	Shared Neighborhood Hits	57
SwissProt Accessions	Q96JM2, Q8N408	Gene names	ZNF462, KIAA1803
Domain Architecture	No domain graphic available
Description	Zinc finger protein 462.

ARID2_HUMAN
NC score	0.072389 (rank : 353)	θ value	0.0563607 (rank : 44)
Query Neighborhood Hits	334	Target Neighborhood Hits	302	Shared Neighborhood Hits	24
SwissProt Accessions	Q68CP9, Q5EB51, Q645I3, Q6ZRY5, Q7Z3I5, Q86T28, Q96SJ6, Q9HCL5	Gene names	ARID2, KIAA1557
Domain Architecture	No domain graphic available
Description	AT-rich interactive domain-containing protein 2 (ARID domain- containing protein 2) (BRG1-associated factor 200) (BAF200).

LMO4_HUMAN
NC score	0.071886 (rank : 354)	θ value	θ > 10 (rank : 417)
Query Neighborhood Hits	334	Target Neighborhood Hits	111	Shared Neighborhood Hits	22
SwissProt Accessions	P61968, O00158, O88894	Gene names	LMO4
Domain Architecture
Description	LIM domain transcription factor LMO4 (LIM domain only protein 4) (LMO- 4) (Breast tumor autoantigen).

LMO4_MOUSE
NC score	0.071886 (rank : 355)	θ value	θ > 10 (rank : 418)
Query Neighborhood Hits	334	Target Neighborhood Hits	111	Shared Neighborhood Hits	22
SwissProt Accessions	P61969, O00158, O88894	Gene names	Lmo4
Domain Architecture
Description	LIM domain transcription factor LMO4 (LIM domain only protein 4) (LMO- 4) (Breast tumor autoantigen).

PKNX2_HUMAN
NC score	0.070923 (rank : 356)	θ value	θ > 10 (rank : 457)
Query Neighborhood Hits	334	Target Neighborhood Hits	133	Shared Neighborhood Hits	66
SwissProt Accessions	Q96KN3, Q63HL6, Q86XD1	Gene names	PKNOX2, PREP2
Domain Architecture
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

CUTL2_HUMAN
NC score	0.070153 (rank : 357)	θ value	θ > 10 (rank : 342)
Query Neighborhood Hits	334	Target Neighborhood Hits	906	Shared Neighborhood Hits	143
SwissProt Accessions	O14529	Gene names	CUTL2, KIAA0293
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

RBTN1_MOUSE
NC score	0.069501 (rank : 358)	θ value	θ > 10 (rank : 478)
Query Neighborhood Hits	334	Target Neighborhood Hits	109	Shared Neighborhood Hits	22
SwissProt Accessions	Q924W9	Gene names	Lmo1, Rbtn1, Rhom1, Ttg1
Domain Architecture	No domain graphic available
Description	Rhombotin-1 (Cysteine-rich protein TTG-1) (LIM-only protein 1).

RBTN1_HUMAN
NC score	0.069467 (rank : 359)	θ value	θ > 10 (rank : 477)
Query Neighborhood Hits	334	Target Neighborhood Hits	110	Shared Neighborhood Hits	22
SwissProt Accessions	P25800, Q4VBC5	Gene names	LMO1, RBTN1, RHOM1, TTG1
Domain Architecture
Description	Rhombotin-1 (Cysteine-rich protein TTG-1) (T-cell translocation protein 1) (LIM-only protein 1).

LMO3_HUMAN
NC score	0.069294 (rank : 360)	θ value	θ > 10 (rank : 415)
Query Neighborhood Hits	334	Target Neighborhood Hits	111	Shared Neighborhood Hits	22
SwissProt Accessions	Q8TAP4, Q8N974, Q9UDD5	Gene names	LMO3, RBTN3, RHOM3
Domain Architecture
Description	LIM-only protein 3 (Neuronal-specific transcription factor DAT1) (Rhombotin-3).

LMO3_MOUSE
NC score	0.069294 (rank : 361)	θ value	θ > 10 (rank : 416)
Query Neighborhood Hits	334	Target Neighborhood Hits	111	Shared Neighborhood Hits	22
SwissProt Accessions	Q8BZL8	Gene names	Lmo3
Domain Architecture
Description	LIM-only protein 3 (Neuronal-specific transcription factor DAT1).

PO5FL_HUMAN
NC score	0.069139 (rank : 362)	θ value	θ > 10 (rank : 471)
Query Neighborhood Hits	334	Target Neighborhood Hits	214	Shared Neighborhood Hits	125
SwissProt Accessions	Q06416, Q9BZV9	Gene names	POU5F1P1, OTF3C, POU5FLC8
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 1 (Octamer- binding protein 3-like).

PO5FM_HUMAN
NC score	0.069013 (rank : 363)	θ value	θ > 10 (rank : 472)
Query Neighborhood Hits	334	Target Neighborhood Hits	212	Shared Neighborhood Hits	128
SwissProt Accessions	Q9BZV7	Gene names	POU5F1P1, POU5FLC20
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 2.

RHOX5_MOUSE
NC score	0.068024 (rank : 364)	θ value	θ > 10 (rank : 481)
Query Neighborhood Hits	334	Target Neighborhood Hits	69	Shared Neighborhood Hits	39
SwissProt Accessions	P52651	Gene names	Rhox5, Pem
Domain Architecture	No domain graphic available
Description	Homeobox protein Rhox5 (Reproductive homeobox on chromosome X 5) (Homeobox protein Pem) (Placenta and embryonic expression protein).

TGIF_MOUSE
NC score	0.067376 (rank : 365)	θ value	θ > 10 (rank : 489)
Query Neighborhood Hits	334	Target Neighborhood Hits	125	Shared Neighborhood Hits	49
SwissProt Accessions	P70284, Q921F9, Q99JS3	Gene names	Tgif
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

RBTN2_MOUSE
NC score	0.066895 (rank : 366)	θ value	θ > 10 (rank : 480)
Query Neighborhood Hits	334	Target Neighborhood Hits	114	Shared Neighborhood Hits	22
SwissProt Accessions	P25801	Gene names	Lmo2, Rbtn-2, Rbtn2, Rhom-2
Domain Architecture
Description	Rhombotin-2 (Cysteine-rich protein TTG-2) (T-cell translocation protein 2) (LIM-only protein 2).

RBTN2_HUMAN
NC score	0.066893 (rank : 367)	θ value	θ > 10 (rank : 479)
Query Neighborhood Hits	334	Target Neighborhood Hits	114	Shared Neighborhood Hits	22
SwissProt Accessions	P25791, Q9HD58	Gene names	LMO2, RBTN2, RHOM2, TTG2
Domain Architecture
Description	Rhombotin-2 (Cysteine-rich protein TTG-2) (T-cell translocation protein 2) (LIM-only protein 2).

ZN706_HUMAN
NC score	0.066422 (rank : 368)	θ value	2.36792 (rank : 208)
Query Neighborhood Hits	334	Target Neighborhood Hits	9	Shared Neighborhood Hits	5
SwissProt Accessions	Q9Y5V0	Gene names	ZNF706
Domain Architecture	No domain graphic available
Description	Zinc finger protein 706.

ZN706_MOUSE
NC score	0.066422 (rank : 369)	θ value	2.36792 (rank : 209)
Query Neighborhood Hits	334	Target Neighborhood Hits	9	Shared Neighborhood Hits	5
SwissProt Accessions	Q9D115	Gene names	Znf706, Zfp706
Domain Architecture	No domain graphic available
Description	Zinc finger protein 706.

CUTL2_MOUSE
NC score	0.065812 (rank : 370)	θ value	θ > 10 (rank : 343)
Query Neighborhood Hits	334	Target Neighborhood Hits	771	Shared Neighborhood Hits	137
SwissProt Accessions	P70298	Gene names	Cutl2
Domain Architecture
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

ZN409_HUMAN
NC score	0.065573 (rank : 371)	θ value	θ > 10 (rank : 499)
Query Neighborhood Hits	334	Target Neighborhood Hits	842	Shared Neighborhood Hits	57
SwissProt Accessions	Q9UPU6	Gene names	ZNF409, KIAA1056
Domain Architecture	No domain graphic available
Description	Zinc finger protein 409.

TGIF_HUMAN
NC score	0.064833 (rank : 372)	θ value	θ > 10 (rank : 488)
Query Neighborhood Hits	334	Target Neighborhood Hits	109	Shared Neighborhood Hits	46
SwissProt Accessions	Q15583, Q6ICR0, Q8N5X9, Q9NRS0	Gene names	TGIF
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

HMBX1_HUMAN
NC score	0.062938 (rank : 373)	θ value	θ > 10 (rank : 358)
Query Neighborhood Hits	334	Target Neighborhood Hits	118	Shared Neighborhood Hits	72
SwissProt Accessions	Q6NT76, Q3Y6P1, Q96GS5, Q9H701	Gene names	HMBOX1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

ZCH10_HUMAN
NC score	0.062786 (rank : 374)	θ value	θ > 10 (rank : 498)
Query Neighborhood Hits	334	Target Neighborhood Hits	123	Shared Neighborhood Hits	8
SwissProt Accessions	Q8TBK6, Q9NXR4	Gene names	ZCCHC10
Domain Architecture	No domain graphic available
Description	Zinc finger CCHC domain-containing protein 10.

PAX2_MOUSE
NC score	0.061013 (rank : 375)	θ value	θ > 10 (rank : 444)
Query Neighborhood Hits	334	Target Neighborhood Hits	86	Shared Neighborhood Hits	42
SwissProt Accessions	P32114	Gene names	Pax2, Pax-2
Domain Architecture
Description	Paired box protein Pax-2.

PAX2_HUMAN
NC score	0.060638 (rank : 376)	θ value	θ > 10 (rank : 443)
Query Neighborhood Hits	334	Target Neighborhood Hits	84	Shared Neighborhood Hits	41
SwissProt Accessions	Q02962, Q15105, Q15110, Q15837	Gene names	PAX2
Domain Architecture
Description	Paired box protein Pax-2.

PO5FN_HUMAN
NC score	0.060115 (rank : 377)	θ value	θ > 10 (rank : 473)
Query Neighborhood Hits	334	Target Neighborhood Hits	134	Shared Neighborhood Hits	82
SwissProt Accessions	Q9BZW0	Gene names	POU5FLC1
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 3.

AFTIN_MOUSE
NC score	0.059223 (rank : 378)	θ value	0.163984 (rank : 64)
Query Neighborhood Hits	334	Target Neighborhood Hits	52	Shared Neighborhood Hits	4
SwissProt Accessions	Q80WT5, Q5SSE6, Q99KJ1	Gene names	Aftph, Afth
Domain Architecture	No domain graphic available
Description	Aftiphilin.

PAX5_MOUSE
NC score	0.056715 (rank : 379)	θ value	θ > 10 (rank : 446)
Query Neighborhood Hits	334	Target Neighborhood Hits	106	Shared Neighborhood Hits	36
SwissProt Accessions	Q02650	Gene names	Pax5, Pax-5
Domain Architecture
Description	Paired box protein Pax-5 (B-cell-specific transcription factor) (BSAP).

PAX5_HUMAN
NC score	0.056656 (rank : 380)	θ value	θ > 10 (rank : 445)
Query Neighborhood Hits	334	Target Neighborhood Hits	106	Shared Neighborhood Hits	36
SwissProt Accessions	Q02548, O75933	Gene names	PAX5
Domain Architecture
Description	Paired box protein Pax-5 (B-cell-specific transcription factor) (BSAP).

PAX8_MOUSE
NC score	0.055524 (rank : 381)	θ value	θ > 10 (rank : 448)
Query Neighborhood Hits	334	Target Neighborhood Hits	62	Shared Neighborhood Hits	23
SwissProt Accessions	Q00288, P97342	Gene names	Pax8, Pax-8
Domain Architecture
Description	Paired box protein Pax-8.

ZN518_HUMAN
NC score	0.054563 (rank : 382)	θ value	0.0252991 (rank : 30)
Query Neighborhood Hits	334	Target Neighborhood Hits	780	Shared Neighborhood Hits	53
SwissProt Accessions	Q6AHZ1, O15044, Q32MP4	Gene names	ZNF518, KIAA0335
Domain Architecture	No domain graphic available
Description	Zinc finger protein 518.

PAX9_HUMAN
NC score	0.054481 (rank : 383)	θ value	θ > 10 (rank : 449)
Query Neighborhood Hits	334	Target Neighborhood Hits	92	Shared Neighborhood Hits	19
SwissProt Accessions	P55771, Q99582, Q9UQR4	Gene names	PAX9
Domain Architecture
Description	Paired box protein Pax-9.

HMBX1_MOUSE
NC score	0.054154 (rank : 384)	θ value	θ > 10 (rank : 359)
Query Neighborhood Hits	334	Target Neighborhood Hits	117	Shared Neighborhood Hits	71
SwissProt Accessions	Q8BJA3, Q80WC2, Q8BWE7, Q99LV1	Gene names	Hmbox1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

SATB1_MOUSE
NC score	0.053976 (rank : 385)	θ value	θ > 10 (rank : 483)
Query Neighborhood Hits	334	Target Neighborhood Hits	130	Shared Neighborhood Hits	47
SwissProt Accessions	Q60611	Gene names	Satb1
Domain Architecture
Description	DNA-binding protein SATB1 (Special AT-rich sequence-binding protein 1).

PAX8_HUMAN
NC score	0.053782 (rank : 386)	θ value	θ > 10 (rank : 447)
Query Neighborhood Hits	334	Target Neighborhood Hits	56	Shared Neighborhood Hits	18
SwissProt Accessions	Q06710, Q09155, Q16337, Q16338, Q16339, Q96J49	Gene names	PAX8
Domain Architecture
Description	Paired box protein Pax-8.

PAX9_MOUSE
NC score	0.053547 (rank : 387)	θ value	θ > 10 (rank : 450)
Query Neighborhood Hits	334	Target Neighborhood Hits	67	Shared Neighborhood Hits	11
SwissProt Accessions	P47242	Gene names	Pax9, Pax-9
Domain Architecture
Description	Paired box protein Pax-9.

TIMD1_HUMAN
NC score	0.052810 (rank : 388)	θ value	θ > 10 (rank : 490)
Query Neighborhood Hits	334	Target Neighborhood Hits	155	Shared Neighborhood Hits	12
SwissProt Accessions	Q96D42, O43656	Gene names	HAVCR1, TIM1, TIMD1
Domain Architecture	No domain graphic available
Description	Hepatitis A virus cellular receptor 1 precursor (HAVcr-1) (T cell immunoglobulin and mucin domain-containing protein 1) (TIMD-1) (T cell membrane protein 1) (TIM-1) (TIM).

PAX1_MOUSE
NC score	0.052065 (rank : 389)	θ value	θ > 10 (rank : 442)
Query Neighborhood Hits	334	Target Neighborhood Hits	69	Shared Neighborhood Hits	11
SwissProt Accessions	P09084, Q9R2B1	Gene names	Pax1, Pax-1
Domain Architecture
Description	Paired box protein Pax-1.

PAX1_HUMAN
NC score	0.051281 (rank : 390)	θ value	θ > 10 (rank : 441)
Query Neighborhood Hits	334	Target Neighborhood Hits	72	Shared Neighborhood Hits	11
SwissProt Accessions	P15863, Q642X9, Q6NTC0, Q9Y558	Gene names	PAX1, HUP48
Domain Architecture
Description	Paired box protein Pax-1 (HUP48).

SATB1_HUMAN
NC score	0.050578 (rank : 391)	θ value	θ > 10 (rank : 482)
Query Neighborhood Hits	334	Target Neighborhood Hits	130	Shared Neighborhood Hits	42
SwissProt Accessions	Q01826	Gene names	SATB1
Domain Architecture
Description	DNA-binding protein SATB1 (Special AT-rich sequence-binding protein 1).

ZN507_HUMAN
NC score	0.048291 (rank : 392)	θ value	4.03905 (rank : 248)
Query Neighborhood Hits	334	Target Neighborhood Hits	739	Shared Neighborhood Hits	57
SwissProt Accessions	Q8TCN5	Gene names	ZNF507
Domain Architecture	No domain graphic available
Description	Zinc finger protein 507.

MUC2_HUMAN
NC score	0.047833 (rank : 393)	θ value	0.365318 (rank : 93)
Query Neighborhood Hits	334	Target Neighborhood Hits	906	Shared Neighborhood Hits	46
SwissProt Accessions	Q02817, Q14878	Gene names	MUC2, SMUC
Domain Architecture
Description	Mucin-2 precursor (Intestinal mucin-2).

ZN711_HUMAN
NC score	0.047677 (rank : 394)	θ value	0.0330416 (rank : 35)
Query Neighborhood Hits	334	Target Neighborhood Hits	751	Shared Neighborhood Hits	57
SwissProt Accessions	Q9Y462, Q6NX42, Q9Y4J6	Gene names	ZNF711, CMPX1, ZNF6
Domain Architecture
Description	Zinc finger protein 711 (Zinc finger protein 6).

ZFY2_MOUSE
NC score	0.046688 (rank : 395)	θ value	0.125558 (rank : 63)
Query Neighborhood Hits	334	Target Neighborhood Hits	795	Shared Neighborhood Hits	57
SwissProt Accessions	P20662	Gene names	Zfy2, Zfy-2
Domain Architecture
Description	Zinc finger Y-chromosomal protein 2.

ZFY1_MOUSE
NC score	0.046374 (rank : 396)	θ value	0.279714 (rank : 88)
Query Neighborhood Hits	334	Target Neighborhood Hits	790	Shared Neighborhood Hits	58
SwissProt Accessions	P10925	Gene names	Zfy1, Zfy-1
Domain Architecture
Description	Zinc finger Y-chromosomal protein 1.

SUHW1_HUMAN
NC score	0.045924 (rank : 397)	θ value	0.21417 (rank : 78)
Query Neighborhood Hits	334	Target Neighborhood Hits	648	Shared Neighborhood Hits	53
SwissProt Accessions	P59817	Gene names	SUHW1
Domain Architecture	No domain graphic available
Description	Suppressor of hairy wing homolog 1 (3'OY11.1).

ZFY_HUMAN
NC score	0.045832 (rank : 398)	θ value	0.0736092 (rank : 56)
Query Neighborhood Hits	334	Target Neighborhood Hits	752	Shared Neighborhood Hits	59
SwissProt Accessions	P08048, Q14021, Q15558, Q96TF3	Gene names	ZFY
Domain Architecture
Description	Zinc finger Y-chromosomal protein.

ZFX_HUMAN
NC score	0.045706 (rank : 399)	θ value	0.0563607 (rank : 51)
Query Neighborhood Hits	334	Target Neighborhood Hits	751	Shared Neighborhood Hits	57
SwissProt Accessions	P17010, O43668, Q8WYJ8	Gene names	ZFX
Domain Architecture
Description	Zinc finger X-chromosomal protein.

ZFX_MOUSE
NC score	0.045635 (rank : 400)	θ value	0.0563607 (rank : 52)
Query Neighborhood Hits	334	Target Neighborhood Hits	748	Shared Neighborhood Hits	57
SwissProt Accessions	P17012, P17011	Gene names	Zfx
Domain Architecture
Description	Zinc finger X-chromosomal protein.

MUC5B_HUMAN
NC score	0.045372 (rank : 401)	θ value	1.06291 (rank : 153)
Query Neighborhood Hits	334	Target Neighborhood Hits	1020	Shared Neighborhood Hits	42
SwissProt Accessions	Q9HC84, O00447, O00573, O14985, O15494, O95291, O95451, Q14881, Q99552, Q9UE28	Gene names	MUC5B, MUC5
Domain Architecture
Description	Mucin-5B precursor (Mucin-5 subtype B, tracheobronchial) (High molecular weight salivary mucin MG1) (Sublingual gland mucin).

ZFA_MOUSE
NC score	0.044203 (rank : 402)	θ value	0.163984 (rank : 67)
Query Neighborhood Hits	334	Target Neighborhood Hits	746	Shared Neighborhood Hits	58
SwissProt Accessions	P23607	Gene names	Zfa
Domain Architecture
Description	Zinc finger autosomal protein.

HCFC1_HUMAN
NC score	0.042940 (rank : 403)	θ value	0.279714 (rank : 79)
Query Neighborhood Hits	334	Target Neighborhood Hits	331	Shared Neighborhood Hits	26
SwissProt Accessions	P51610, Q6P4G5	Gene names	HCFC1, HCF1
Domain Architecture	No domain graphic available
Description	Host cell factor (HCF) (HCF-1) (C1 factor) (VP16 accessory protein) (VCAF) (CFF) [Contains: HCF N-terminal chain 1; HCF N-terminal chain 2; HCF N-terminal chain 3; HCF N-terminal chain 4; HCF N-terminal chain 5; HCF N-terminal chain 6; HCF C-terminal chain 1; HCF C- terminal chain 2; HCF C-terminal chain 3; HCF C-terminal chain 4; HCF C-terminal chain 5; HCF C-terminal chain 6].

HCFC1_MOUSE
NC score	0.042570 (rank : 404)	θ value	0.365318 (rank : 92)
Query Neighborhood Hits	334	Target Neighborhood Hits	348	Shared Neighborhood Hits	26
SwissProt Accessions	Q61191, Q684R1, Q7TSB0, Q8C2D0, Q9QWH2	Gene names	Hcfc1
Domain Architecture	No domain graphic available
Description	Host cell factor (HCF) (HCF-1) (C1 factor) [Contains: HCF N-terminal chain 1; HCF N-terminal chain 2; HCF N-terminal chain 3; HCF N- terminal chain 4; HCF N-terminal chain 5; HCF N-terminal chain 6; HCF C-terminal chain 1; HCF C-terminal chain 2; HCF C-terminal chain 3; HCF C-terminal chain 4; HCF C-terminal chain 5; HCF C-terminal chain 6].

ZN142_HUMAN
NC score	0.042236 (rank : 405)	θ value	0.365318 (rank : 96)
Query Neighborhood Hits	334	Target Neighborhood Hits	1007	Shared Neighborhood Hits	70
SwissProt Accessions	P52746, Q92510	Gene names	ZNF142, KIAA0236
Domain Architecture	No domain graphic available
Description	Zinc finger protein 142 (HA4654).

ZN451_HUMAN
NC score	0.042062 (rank : 406)	θ value	3.0926 (rank : 227)
Query Neighborhood Hits	334	Target Neighborhood Hits	627	Shared Neighborhood Hits	48
SwissProt Accessions	Q9Y4E5, Q5VVF1, Q8N380, Q8TD15, Q9NQM1	Gene names	ZNF451, COASTER, KIAA0576
Domain Architecture	No domain graphic available
Description	Zinc finger protein 451 (Coactivator for steroid receptors).

POGZ_MOUSE
NC score	0.040013 (rank : 407)	θ value	4.03905 (rank : 243)
Query Neighborhood Hits	334	Target Neighborhood Hits	765	Shared Neighborhood Hits	63
SwissProt Accessions	Q8BZH4, Q4VA94, Q80TZ8, Q8C0K1, Q8K294	Gene names	Pogz, Kiaa0461
Domain Architecture
Description	Pogo transposable element with ZNF domain.

POGZ_HUMAN
NC score	0.039604 (rank : 408)	θ value	4.03905 (rank : 242)
Query Neighborhood Hits	334	Target Neighborhood Hits	745	Shared Neighborhood Hits	61
SwissProt Accessions	Q7Z3K3, O75049, Q8TDZ7, Q9Y4X7	Gene names	POGZ, KIAA0461
Domain Architecture
Description	Pogo transposable element with ZNF domain.

MIZF_MOUSE
NC score	0.038609 (rank : 409)	θ value	5.27518 (rank : 263)
Query Neighborhood Hits	334	Target Neighborhood Hits	726	Shared Neighborhood Hits	58
SwissProt Accessions	Q8K1K9, Q8BWY0	Gene names	Mizf
Domain Architecture	No domain graphic available
Description	MBD2-interacting zinc finger protein (Methyl-CpG-binding protein 2- interacting zinc finger protein).

ZN236_HUMAN
NC score	0.038214 (rank : 410)	θ value	0.813845 (rank : 144)
Query Neighborhood Hits	334	Target Neighborhood Hits	844	Shared Neighborhood Hits	63
SwissProt Accessions	Q9UL36, Q9UL37	Gene names	ZNF236
Domain Architecture	No domain graphic available
Description	Zinc finger protein 236.

PODXL_HUMAN
NC score	0.037538 (rank : 411)	θ value	1.06291 (rank : 158)
Query Neighborhood Hits	334	Target Neighborhood Hits	191	Shared Neighborhood Hits	16
SwissProt Accessions	O00592	Gene names	PODXL, PCLP, PCLP1
Domain Architecture
Description	Podocalyxin-like protein 1 precursor.

ZN406_HUMAN
NC score	0.036455 (rank : 412)	θ value	6.88961 (rank : 307)
Query Neighborhood Hits	334	Target Neighborhood Hits	794	Shared Neighborhood Hits	58
SwissProt Accessions	Q9P243, Q3MIM5, Q6PJ01, Q75PJ7, Q75PJ9, Q86X64	Gene names	ZNF406, KIAA1485
Domain Architecture	No domain graphic available
Description	Zinc finger protein 406 (Protein ZFAT).

UCHL5_MOUSE
NC score	0.036329 (rank : 413)	θ value	0.813845 (rank : 141)
Query Neighborhood Hits	334	Target Neighborhood Hits	36	Shared Neighborhood Hits	4
SwissProt Accessions	Q9WUP7, Q9CVJ4, Q9CXZ3, Q9R107	Gene names	Uchl5, Uch37
Domain Architecture
Description	Ubiquitin carboxyl-terminal hydrolase isozyme L5 (EC 3.4.19.12) (UCH- L5) (Ubiquitin thioesterase L5) (Ubiquitin C-terminal hydrolase UCH37).

CBP_HUMAN
NC score	0.035808 (rank : 414)	θ value	3.0926 (rank : 213)
Query Neighborhood Hits	334	Target Neighborhood Hits	941	Shared Neighborhood Hits	41
SwissProt Accessions	Q92793, O00147, Q16376	Gene names	CREBBP, CBP
Domain Architecture
Description	CREB-binding protein (EC 2.3.1.48).

ZN406_MOUSE
NC score	0.035101 (rank : 415)	θ value	6.88961 (rank : 308)
Query Neighborhood Hits	334	Target Neighborhood Hits	800	Shared Neighborhood Hits	57
SwissProt Accessions	Q7TS63	Gene names	Znf406, Zfp406
Domain Architecture	No domain graphic available
Description	Zinc finger protein 406.

MDC1_HUMAN
NC score	0.034295 (rank : 416)	θ value	0.47712 (rank : 99)
Query Neighborhood Hits	334	Target Neighborhood Hits	1446	Shared Neighborhood Hits	57
SwissProt Accessions	Q14676, Q5JP55, Q5JP56, Q5ST83, Q68CQ3, Q86Z06, Q96QC2	Gene names	MDC1, KIAA0170, NFBD1
Domain Architecture	No domain graphic available
Description	Mediator of DNA damage checkpoint protein 1 (Nuclear factor with BRCT domains 1).

SUHW2_HUMAN
NC score	0.033797 (rank : 417)	θ value	5.27518 (rank : 270)
Query Neighborhood Hits	334	Target Neighborhood Hits	683	Shared Neighborhood Hits	53
SwissProt Accessions	Q86YH2	Gene names	SUHW2, ZNF632
Domain Architecture	No domain graphic available
Description	Suppressor of hairy wing homolog 2 (5'OY11.1) (Zinc finger protein 632).

ZN638_HUMAN
NC score	0.033507 (rank : 418)	θ value	1.81305 (rank : 198)
Query Neighborhood Hits	334	Target Neighborhood Hits	343	Shared Neighborhood Hits	15
SwissProt Accessions	Q14966, Q53R34, Q5XJ05, Q68DP3, Q6P2H2, Q7Z3T7, Q8NF92, Q8TCA1, Q9H2G1, Q9NP37	Gene names	ZNF638, NP220, ZFML
Domain Architecture	No domain graphic available
Description	Zinc finger protein 638 (Nuclear protein 220) (Zinc-finger matrin-like protein) (Cutaneous T-cell lymphoma-associated antigen se33-1) (CTCL tumor antigen se33-1).

MBD6_HUMAN
NC score	0.032672 (rank : 419)	θ value	1.38821 (rank : 170)
Query Neighborhood Hits	334	Target Neighborhood Hits	349	Shared Neighborhood Hits	18
SwissProt Accessions	Q96DN6, Q8N3M0, Q8NA81, Q96Q00	Gene names	MBD6, KIAA1887
Domain Architecture	No domain graphic available
Description	Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding protein MBD6).

AMOT_HUMAN
NC score	0.032157 (rank : 420)	θ value	0.125558 (rank : 61)
Query Neighborhood Hits	334	Target Neighborhood Hits	712	Shared Neighborhood Hits	20
SwissProt Accessions	Q4VCS5, Q504X5, Q9HD27, Q9UPT1	Gene names	AMOT, KIAA1071
Domain Architecture	No domain graphic available
Description	Angiomotin.

BORIS_HUMAN
NC score	0.031673 (rank : 421)	θ value	0.163984 (rank : 65)
Query Neighborhood Hits	334	Target Neighborhood Hits	743	Shared Neighborhood Hits	57
SwissProt Accessions	Q8NI51, Q5JUG4, Q9BZ30, Q9NQJ3	Gene names	CTCFL, BORIS
Domain Architecture	No domain graphic available
Description	Transcriptional repressor CTCFL (CCCTC-binding factor) (Brother of the regulator of imprinted sites) (Zinc finger protein CTCF-T) (CTCF paralog).

ZN295_HUMAN
NC score	0.031506 (rank : 422)	θ value	1.06291 (rank : 163)
Query Neighborhood Hits	334	Target Neighborhood Hits	847	Shared Neighborhood Hits	54
SwissProt Accessions	Q9ULJ3, Q6P4R0	Gene names	ZNF295, KIAA1227, ZBTB21
Domain Architecture
Description	Zinc finger protein 295 (Zinc finger and BTB domain-containing protein 21).

PRD10_HUMAN
NC score	0.030485 (rank : 423)	θ value	1.06291 (rank : 159)
Query Neighborhood Hits	334	Target Neighborhood Hits	769	Shared Neighborhood Hits	56
SwissProt Accessions	Q9NQV6, Q9ULI9	Gene names	PRDM10, KIAA1231, PFM7
Domain Architecture	No domain graphic available
Description	PR domain zinc finger protein 10 (PR domain-containing protein 10).

UCHL5_HUMAN
NC score	0.029986 (rank : 424)	θ value	1.38821 (rank : 178)
Query Neighborhood Hits	334	Target Neighborhood Hits	35	Shared Neighborhood Hits	3
SwissProt Accessions	Q9Y5K5, Q5LJA6, Q5LJA7, Q8TBS4, Q96BJ9, Q9H1W5, Q9P0I3, Q9UQN2	Gene names	UCHL5, UCH37
Domain Architecture
Description	Ubiquitin carboxyl-terminal hydrolase isozyme L5 (EC 3.4.19.12) (UCH- L5) (Ubiquitin thioesterase L5) (Ubiquitin C-terminal hydrolase UCH37).

BORG5_HUMAN
NC score	0.029748 (rank : 425)	θ value	0.813845 (rank : 122)
Query Neighborhood Hits	334	Target Neighborhood Hits	135	Shared Neighborhood Hits	10
SwissProt Accessions	Q00587, Q96GN1	Gene names	CDC42EP1, BORG5, CEP1, MSE55
Domain Architecture
Description	Cdc42 effector protein 1 (Binder of Rho GTPases 5) (Serum protein MSE55).

TCF8_MOUSE
NC score	0.029088 (rank : 426)	θ value	8.99809 (rank : 330)
Query Neighborhood Hits	334	Target Neighborhood Hits	1067	Shared Neighborhood Hits	84
SwissProt Accessions	Q64318, Q62519	Gene names	Tcf8, Zfhx1a, Zfx1a, Zfx1ha
Domain Architecture
Description	Transcription factor 8 (Zinc finger homeobox protein 1a) (MEB1) (Delta EF1).

ZMYM3_MOUSE
NC score	0.027838 (rank : 427)	θ value	2.36792 (rank : 207)
Query Neighborhood Hits	334	Target Neighborhood Hits	177	Shared Neighborhood Hits	13
SwissProt Accessions	Q9JLM4, Q80U17	Gene names	Zmym3, Kiaa0385, Zfp261, Znf261
Domain Architecture	No domain graphic available
Description	Zinc finger MYM-type protein 3 (Zinc finger protein 261) (DXHXS6673E protein).

TCF8_HUMAN
NC score	0.027622 (rank : 428)	θ value	6.88961 (rank : 302)
Query Neighborhood Hits	334	Target Neighborhood Hits	1057	Shared Neighborhood Hits	83
SwissProt Accessions	P37275, Q12924, Q13800	Gene names	TCF8, AREB6
Domain Architecture
Description	Transcription factor 8 (NIL-2-A zinc finger protein) (Negative regulator of IL2).

CBP_MOUSE
NC score	0.025924 (rank : 429)	θ value	1.81305 (rank : 182)
Query Neighborhood Hits	334	Target Neighborhood Hits	1051	Shared Neighborhood Hits	46
SwissProt Accessions	P45481	Gene names	Crebbp, Cbp
Domain Architecture
Description	CREB-binding protein (EC 2.3.1.48).

G7D_HUMAN
NC score	0.025496 (rank : 430)	θ value	6.88961 (rank : 283)
Query Neighborhood Hits	334	Target Neighborhood Hits	7	Shared Neighborhood Hits	3
SwissProt Accessions	Q5SSQ6, Q9Y335	Gene names	C6orf26, G7D, NG23
Domain Architecture	No domain graphic available
Description	Protein G7d.

ZN699_HUMAN
NC score	0.025391 (rank : 431)	θ value	0.279714 (rank : 89)
Query Neighborhood Hits	334	Target Neighborhood Hits	773	Shared Neighborhood Hits	54
SwissProt Accessions	Q32M78, Q8N9A1	Gene names	ZNF699
Domain Architecture	No domain graphic available
Description	Zinc finger protein 699 (Hangover homolog).

ZN502_HUMAN
NC score	0.025260 (rank : 432)	θ value	5.27518 (rank : 275)
Query Neighborhood Hits	334	Target Neighborhood Hits	762	Shared Neighborhood Hits	55
SwissProt Accessions	Q8TBZ5	Gene names	ZNF502
Domain Architecture	No domain graphic available
Description	Zinc finger protein 502.

MUC1_HUMAN
NC score	0.024923 (rank : 433)	θ value	5.27518 (rank : 264)
Query Neighborhood Hits	334	Target Neighborhood Hits	975	Shared Neighborhood Hits	56
SwissProt Accessions	P15941, P13931, P15942, P17626, Q14128, Q14876, Q16437, Q16442, Q16615, Q9BXA4, Q9UE75, Q9UE76, Q9UQL1, Q9Y4J2	Gene names	MUC1
Domain Architecture
Description	Mucin-1 precursor (MUC-1) (Polymorphic epithelial mucin) (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) (H23AG) (Peanut- reactive urinary mucin) (PUM) (Breast carcinoma-associated antigen DF3) (CD227 antigen).

RLF_HUMAN
NC score	0.024334 (rank : 434)	θ value	8.99809 (rank : 326)
Query Neighborhood Hits	334	Target Neighborhood Hits	775	Shared Neighborhood Hits	52
SwissProt Accessions	Q13129, Q9NU60	Gene names	RLF
Domain Architecture	No domain graphic available
Description	Zinc finger protein Rlf (Rearranged L-myc fusion gene protein) (Zn-15- related protein).

ZEP2_MOUSE
NC score	0.024045 (rank : 435)	θ value	6.88961 (rank : 306)
Query Neighborhood Hits	334	Target Neighborhood Hits	964	Shared Neighborhood Hits	58
SwissProt Accessions	Q3UHF7, O55140, Q3UVD4, Q3UVH5	Gene names	Hivep2, Mibp1
Domain Architecture	No domain graphic available
Description	Human immunodeficiency virus type I enhancer-binding protein 2 homolog (Myc intron-binding protein 1) (MIBP-1).

ZNF43_HUMAN
NC score	0.023687 (rank : 436)	θ value	3.0926 (rank : 228)
Query Neighborhood Hits	334	Target Neighborhood Hits	779	Shared Neighborhood Hits	57
SwissProt Accessions	P17038, P28160, Q96DG1	Gene names	ZNF43, KOX27, ZNF39
Domain Architecture
Description	Zinc finger protein 43 (Zinc protein HTF6) (Zinc finger protein KOX27).

K0460_MOUSE
NC score	0.022779 (rank : 437)	θ value	3.0926 (rank : 224)
Query Neighborhood Hits	334	Target Neighborhood Hits	374	Shared Neighborhood Hits	20
SwissProt Accessions	Q6NXI6, Q3U3L8, Q6ZQA7	Gene names	Kiaa0460
Domain Architecture	No domain graphic available
Description	Protein KIAA0460.

ZN653_HUMAN
NC score	0.022315 (rank : 438)	θ value	6.88961 (rank : 310)
Query Neighborhood Hits	334	Target Neighborhood Hits	719	Shared Neighborhood Hits	53
SwissProt Accessions	Q96CK0, Q96AS7	Gene names	ZNF653, ZIP67
Domain Architecture	No domain graphic available
Description	Zinc finger protein 653 (67 kDa zinc finger protein) (Zinc finger protein Zip67).

ZN653_MOUSE
NC score	0.022281 (rank : 439)	θ value	6.88961 (rank : 311)
Query Neighborhood Hits	334	Target Neighborhood Hits	744	Shared Neighborhood Hits	53
SwissProt Accessions	Q6YND2, Q8BHT8, Q8CI02	Gene names	Znf653, Zfp653, Zip67
Domain Architecture	No domain graphic available
Description	Zinc finger protein 653 (67 kDa zinc finger protein) (Zinc finger protein Zip67).

VEZF1_HUMAN
NC score	0.022149 (rank : 440)	θ value	6.88961 (rank : 305)
Query Neighborhood Hits	334	Target Neighborhood Hits	744	Shared Neighborhood Hits	52
SwissProt Accessions	Q14119	Gene names	VEZF1, DB1, ZNF161
Domain Architecture	No domain graphic available
Description	Vascular endothelial zinc finger 1 (Zinc finger protein 161) (Putative transcription factor DB1).

ZN426_HUMAN
NC score	0.022141 (rank : 441)	θ value	4.03905 (rank : 247)
Query Neighborhood Hits	334	Target Neighborhood Hits	747	Shared Neighborhood Hits	54
SwissProt Accessions	Q9BUY5	Gene names	ZNF426
Domain Architecture
Description	Zinc finger protein 426.

ZN141_HUMAN
NC score	0.022121 (rank : 442)	θ value	1.06291 (rank : 162)
Query Neighborhood Hits	334	Target Neighborhood Hits	767	Shared Neighborhood Hits	55
SwissProt Accessions	Q15928, Q6DK07	Gene names	ZNF141
Domain Architecture
Description	Zinc finger protein 141.

ZN471_HUMAN
NC score	0.021977 (rank : 443)	θ value	6.88961 (rank : 309)
Query Neighborhood Hits	334	Target Neighborhood Hits	771	Shared Neighborhood Hits	55
SwissProt Accessions	Q9BX82, O75260, Q8N3V1, Q9P2F1	Gene names	ZNF471, ERP1, KIAA1396
Domain Architecture
Description	Zinc finger protein 471 (EZFIT-related protein 1).

ZN546_HUMAN
NC score	0.021921 (rank : 444)	θ value	1.06291 (rank : 164)
Query Neighborhood Hits	334	Target Neighborhood Hits	772	Shared Neighborhood Hits	53
SwissProt Accessions	Q86UE3	Gene names	ZNF546, ZNF49
Domain Architecture	No domain graphic available
Description	Zinc finger protein 546.

PEG3_MOUSE
NC score	0.021683 (rank : 445)	θ value	0.62314 (rank : 115)
Query Neighborhood Hits	334	Target Neighborhood Hits	1101	Shared Neighborhood Hits	52
SwissProt Accessions	Q3URU2, O54978, Q3TQ69, Q5EBP7, Q61138, Q6GQS0, Q80U47, Q8R5N0, Q9QX53	Gene names	Peg3, Kiaa0287, Pw1
Domain Architecture	No domain graphic available
Description	Paternally expressed gene 3 protein (ASF-1).

ZN124_HUMAN
NC score	0.021668 (rank : 446)	θ value	0.62314 (rank : 121)
Query Neighborhood Hits	334	Target Neighborhood Hits	734	Shared Neighborhood Hits	49
SwissProt Accessions	Q15973, Q15974, Q4VAJ7, Q5T2V4	Gene names	ZNF124
Domain Architecture	No domain graphic available
Description	Zinc finger protein 124 (HZF-16).

ZN501_HUMAN
NC score	0.021657 (rank : 447)	θ value	8.99809 (rank : 333)
Query Neighborhood Hits	334	Target Neighborhood Hits	745	Shared Neighborhood Hits	56
SwissProt Accessions	Q96CX3, Q96NU9	Gene names	ZNF501, ZNF52
Domain Architecture	No domain graphic available
Description	Zinc finger protein 501 (Zinc finger protein 52).

ARMX2_HUMAN
NC score	0.020958 (rank : 448)	θ value	1.06291 (rank : 145)
Query Neighborhood Hits	334	Target Neighborhood Hits	134	Shared Neighborhood Hits	5
SwissProt Accessions	Q7L311, O60267, Q5H9D9	Gene names	ARMCX2, ALEX2, KIAA0512
Domain Architecture	No domain graphic available
Description	Armadillo repeat-containing X-linked protein 2 (Protein ALEX2) (ARM protein lost in epithelial cancers on chromosome X 2).

CN104_HUMAN
NC score	0.020427 (rank : 449)	θ value	3.0926 (rank : 214)
Query Neighborhood Hits	334	Target Neighborhood Hits	30	Shared Neighborhood Hits	2
SwissProt Accessions	Q9NVR5, Q86TY8, Q969Z5	Gene names	C14orf104
Domain Architecture	No domain graphic available
Description	Uncharacterized protein C14orf104.

ZN431_HUMAN
NC score	0.020347 (rank : 450)	θ value	8.99809 (rank : 331)
Query Neighborhood Hits	334	Target Neighborhood Hits	765	Shared Neighborhood Hits	52
SwissProt Accessions	Q8TF32, Q8IWC4	Gene names	ZNF431, KIAA1969
Domain Architecture
Description	Zinc finger protein 431.

ZN483_HUMAN
NC score	0.020314 (rank : 451)	θ value	0.47712 (rank : 101)
Query Neighborhood Hits	334	Target Neighborhood Hits	785	Shared Neighborhood Hits	53
SwissProt Accessions	Q8TF39	Gene names	ZNF483, KIAA1962
Domain Architecture
Description	Zinc finger protein 483.

SYP2L_HUMAN
NC score	0.020022 (rank : 452)	θ value	2.36792 (rank : 206)
Query Neighborhood Hits	334	Target Neighborhood Hits	400	Shared Neighborhood Hits	19
SwissProt Accessions	Q9H987	Gene names	SYNPO2L
Domain Architecture	No domain graphic available
Description	Synaptopodin 2-like protein.

ZN101_HUMAN
NC score	0.019325 (rank : 453)	θ value	5.27518 (rank : 274)
Query Neighborhood Hits	334	Target Neighborhood Hits	731	Shared Neighborhood Hits	49
SwissProt Accessions	Q8IZC7	Gene names	ZNF101
Domain Architecture	No domain graphic available
Description	Zinc finger protein 101 (Zinc finger protein HZF12).

PARM1_HUMAN
NC score	0.018937 (rank : 454)	θ value	6.88961 (rank : 292)
Query Neighborhood Hits	334	Target Neighborhood Hits	86	Shared Neighborhood Hits	10
SwissProt Accessions	Q6UWI2, Q96DV8, Q9Y4S1	Gene names	ames=UNQ1879/PRO4322
Domain Architecture	No domain graphic available
Description	Protein PARM-1 precursor.

ZN621_HUMAN
NC score	0.018918 (rank : 455)	θ value	8.99809 (rank : 334)
Query Neighborhood Hits	334	Target Neighborhood Hits	737	Shared Neighborhood Hits	52
SwissProt Accessions	Q6ZSS3, Q8TE91	Gene names	ZNF621
Domain Architecture	No domain graphic available
Description	Zinc finger protein 621.

ZN491_HUMAN
NC score	0.018777 (rank : 456)	θ value	8.99809 (rank : 332)
Query Neighborhood Hits	334	Target Neighborhood Hits	734	Shared Neighborhood Hits	50
SwissProt Accessions	Q8N8L2, Q8NAT8	Gene names	ZNF491
Domain Architecture	No domain graphic available
Description	Zinc finger protein 491.

GMEB2_MOUSE
NC score	0.018612 (rank : 457)	θ value	1.38821 (rank : 168)
Query Neighborhood Hits	334	Target Neighborhood Hits	64	Shared Neighborhood Hits	2
SwissProt Accessions	P58929, Q6PCY0	Gene names	Gmeb2
Domain Architecture	No domain graphic available
Description	Glucocorticoid modulatory element-binding protein 2 (GMEB-2).

GLUD1_MOUSE
NC score	0.018299 (rank : 458)	θ value	3.0926 (rank : 218)
Query Neighborhood Hits	334	Target Neighborhood Hits	23	Shared Neighborhood Hits	3
SwissProt Accessions	Q8CIX8	Gene names	Gluld1, Lgs
Domain Architecture	No domain graphic available
Description	Glutamate--ammonia ligase domain-containing protein 1 (Lengsin) (Lens glutamine synthase-like).

PF21B_HUMAN
NC score	0.017902 (rank : 459)	θ value	8.99809 (rank : 323)
Query Neighborhood Hits	334	Target Neighborhood Hits	197	Shared Neighborhood Hits	10
SwissProt Accessions	Q96EK2, Q5TFL2, Q6ICC0	Gene names	PHF21B
Domain Architecture	No domain graphic available
Description	PHD finger protein 21B.

THA11_MOUSE
NC score	0.017515 (rank : 460)	θ value	5.27518 (rank : 271)
Query Neighborhood Hits	334	Target Neighborhood Hits	19	Shared Neighborhood Hits	2
SwissProt Accessions	Q9JJD0	Gene names	Thap11
Domain Architecture
Description	THAP domain-containing protein 11.

SDC3_HUMAN
NC score	0.017167 (rank : 461)	θ value	6.88961 (rank : 301)
Query Neighborhood Hits	334	Target Neighborhood Hits	103	Shared Neighborhood Hits	10
SwissProt Accessions	O75056, Q5T1Z6, Q5T1Z7, Q96CT3, Q96PR8	Gene names	SDC3, KIAA0468
Domain Architecture
Description	Syndecan-3 (SYND3).

MYEF2_MOUSE
NC score	0.017026 (rank : 462)	θ value	4.03905 (rank : 238)
Query Neighborhood Hits	334	Target Neighborhood Hits	247	Shared Neighborhood Hits	5
SwissProt Accessions	Q8C854, Q60690, Q6P930, Q6ZPT3, Q8QZZ1	Gene names	Myef2, Kiaa1341, Mef2
Domain Architecture	No domain graphic available
Description	Myelin expression factor 2 (MyEF-2) (MEF-2).

XRCC1_HUMAN
NC score	0.016867 (rank : 463)	θ value	4.03905 (rank : 246)
Query Neighborhood Hits	334	Target Neighborhood Hits	131	Shared Neighborhood Hits	7
SwissProt Accessions	P18887, Q9HCB1	Gene names	XRCC1
Domain Architecture
Description	DNA-repair protein XRCC1 (X-ray repair cross-complementing protein 1).

EP400_MOUSE
NC score	0.016858 (rank : 464)	θ value	1.06291 (rank : 149)
Query Neighborhood Hits	334	Target Neighborhood Hits	592	Shared Neighborhood Hits	24
SwissProt Accessions	Q8CHI8, Q80TC8, Q8BXI5, Q8BYW3, Q8C0P6, Q8CHI7, Q8VDF4, Q9DA54	Gene names	Ep400, Kiaa1498
Domain Architecture	No domain graphic available
Description	E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa SWI2/SNF2-related protein) (Domino homolog) (mDomino).

ZAN_MOUSE
NC score	0.016574 (rank : 465)	θ value	1.81305 (rank : 197)
Query Neighborhood Hits	334	Target Neighborhood Hits	808	Shared Neighborhood Hits	16
SwissProt Accessions	O88799, O08647	Gene names	Zan
Domain Architecture
Description	Zonadhesin precursor.

EPN2_HUMAN
NC score	0.016043 (rank : 466)	θ value	3.0926 (rank : 217)
Query Neighborhood Hits	334	Target Neighborhood Hits	156	Shared Neighborhood Hits	12
SwissProt Accessions	O95208, O95207, Q9H7Z2, Q9UPT7	Gene names	EPN2, KIAA1065
Domain Architecture
Description	Epsin-2 (EPS-15-interacting protein 2).

IPP2_HUMAN
NC score	0.015319 (rank : 467)	θ value	5.27518 (rank : 262)
Query Neighborhood Hits	334	Target Neighborhood Hits	14	Shared Neighborhood Hits	2
SwissProt Accessions	P41236	Gene names	PPP1R2, IPP2
Domain Architecture
Description	Protein phosphatase inhibitor 2 (IPP-2).

HPS4_MOUSE
NC score	0.015178 (rank : 468)	θ value	5.27518 (rank : 258)
Query Neighborhood Hits	334	Target Neighborhood Hits	80	Shared Neighborhood Hits	9
SwissProt Accessions	Q99KG7	Gene names	Hps4, Le
Domain Architecture	No domain graphic available
Description	Hermansky-Pudlak syndrome 4 protein homolog (Light-ear protein) (Le protein).

PF21B_MOUSE
NC score	0.014340 (rank : 469)	θ value	8.99809 (rank : 324)
Query Neighborhood Hits	334	Target Neighborhood Hits	278	Shared Neighborhood Hits	21
SwissProt Accessions	Q8C966	Gene names	Phf21b
Domain Architecture	No domain graphic available
Description	PHD finger protein 21B.

NGLY1_HUMAN
NC score	0.012932 (rank : 470)	θ value	5.27518 (rank : 266)
Query Neighborhood Hits	334	Target Neighborhood Hits	34	Shared Neighborhood Hits	2
SwissProt Accessions	Q96IV0, Q59FB1, Q6PJD8, Q9BVR8, Q9NR70	Gene names	NGLY1, PNG1
Domain Architecture	No domain graphic available
Description	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase (EC 3.5.1.52) (PNGase) (hPNGase) (Peptide:N-glycanase) (N-glycanase 1).

DMRTD_MOUSE
NC score	0.012633 (rank : 471)	θ value	5.27518 (rank : 250)
Query Neighborhood Hits	334	Target Neighborhood Hits	72	Shared Neighborhood Hits	5
SwissProt Accessions	Q8CGW9	Gene names	Dmrtc2, Dmrt7
Domain Architecture	No domain graphic available
Description	Doublesex- and mab-3-related transcription factor C2 (Doublesex- and mab-3-related transcription factor 7).

ELF1_MOUSE
NC score	0.011611 (rank : 472)	θ value	8.99809 (rank : 315)
Query Neighborhood Hits	334	Target Neighborhood Hits	139	Shared Neighborhood Hits	12
SwissProt Accessions	Q60775	Gene names	Elf1
Domain Architecture
Description	ETS-related transcription factor Elf-1 (E74-like factor 1).

SF3A2_MOUSE
NC score	0.010907 (rank : 473)	θ value	8.99809 (rank : 327)
Query Neighborhood Hits	334	Target Neighborhood Hits	247	Shared Neighborhood Hits	11
SwissProt Accessions	Q62203	Gene names	Sf3a2, Sap62
Domain Architecture
Description	Splicing factor 3A subunit 2 (Spliceosome-associated protein 62) (SAP 62) (SF3a66).

JHD2C_MOUSE
NC score	0.010464 (rank : 474)	θ value	4.03905 (rank : 235)
Query Neighborhood Hits	334	Target Neighborhood Hits	297	Shared Neighborhood Hits	11
SwissProt Accessions	Q69ZK6, Q6NV48, Q8BUF5, Q8C4I5, Q8C5Q9	Gene names	Jmjd1c, Jhdm2c, Kiaa1380
Domain Architecture	No domain graphic available
Description	Probable JmjC domain-containing histone demethylation protein 2C (EC 1.14.11.-) (Jumonji domain-containing protein 1C).

MYEF2_HUMAN
NC score	0.010294 (rank : 475)	θ value	5.27518 (rank : 265)
Query Neighborhood Hits	334	Target Neighborhood Hits	217	Shared Neighborhood Hits	5
SwissProt Accessions	Q9P2K5, Q6NUM5, Q7L388, Q7Z4B7, Q9H922, Q9NUQ1	Gene names	MYEF2, KIAA1341
Domain Architecture	No domain graphic available
Description	Myelin expression factor 2 (MyEF-2) (MST156).

E41L3_HUMAN
NC score	0.009764 (rank : 476)	θ value	4.03905 (rank : 231)
Query Neighborhood Hits	334	Target Neighborhood Hits	113	Shared Neighborhood Hits	7
SwissProt Accessions	Q9Y2J2, O95713, Q9BRP5	Gene names	EPB41L3, DAL1, KIAA0987
Domain Architecture
Description	Band 4.1-like protein 3 (4.1B) (Differentially expressed in adenocarcinoma of the lung protein 1) (DAL-1).

E41L3_MOUSE
NC score	0.008917 (rank : 477)	θ value	4.03905 (rank : 232)
Query Neighborhood Hits	334	Target Neighborhood Hits	250	Shared Neighborhood Hits	7
SwissProt Accessions	Q9WV92, Q9R102	Gene names	Epb41l3, Dal1, Epb4.1l3
Domain Architecture
Description	Band 4.1-like protein 3 (4.1B) (Differentially expressed in adenocarcinoma of the lung protein 1) (DAL-1) (DAL1P) (mDAL-1).

FANCJ_HUMAN
NC score	0.008521 (rank : 478)	θ value	8.99809 (rank : 318)
Query Neighborhood Hits	334	Target Neighborhood Hits	72	Shared Neighborhood Hits	4
SwissProt Accessions	Q9BX63, Q8NCI5	Gene names	BRIP1, BACH1, FANCJ
Domain Architecture	No domain graphic available
Description	Fanconi anemia group J protein (EC 3.6.1.-) (ATP-dependent RNA helicase BRIP1) (Protein FACJ) (BRCA1-interacting protein C-terminal helicase 1) (BRCA1-interacting protein 1) (BRCA1-associated C-terminal helicase 1).

GMIP_MOUSE
NC score	0.008491 (rank : 479)	θ value	2.36792 (rank : 202)
Query Neighborhood Hits	334	Target Neighborhood Hits	202	Shared Neighborhood Hits	3
SwissProt Accessions	Q6PGG2, Q6P9S3	Gene names	Gmip
Domain Architecture	No domain graphic available
Description	GEM-interacting protein (GMIP).

CBX6_HUMAN
NC score	0.007759 (rank : 480)	θ value	6.88961 (rank : 278)
Query Neighborhood Hits	334	Target Neighborhood Hits	104	Shared Neighborhood Hits	5
SwissProt Accessions	O95503, Q96EM5	Gene names	CBX6
Domain Architecture
Description	Chromobox protein homolog 6.

DUS3L_HUMAN
NC score	0.007575 (rank : 481)	θ value	8.99809 (rank : 314)
Query Neighborhood Hits	334	Target Neighborhood Hits	44	Shared Neighborhood Hits	3
SwissProt Accessions	Q96G46, Q96HM5, Q9BSU4, Q9H877, Q9NPR1	Gene names	DUS3L
Domain Architecture	No domain graphic available
Description	tRNA-dihydrouridine synthase 3-like (EC 1.-.-.-).

GNAS1_MOUSE
NC score	0.007432 (rank : 482)	θ value	5.27518 (rank : 257)
Query Neighborhood Hits	334	Target Neighborhood Hits	651	Shared Neighborhood Hits	24
SwissProt Accessions	Q6R0H7, Q6R0H4, Q6R0H5, Q6R2J5, Q9JJX0, Q9Z1N8	Gene names	Gnas, Gnas1
Domain Architecture	No domain graphic available
Description	Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas (Adenylate cyclase-stimulating G alpha protein) (Extra large alphas protein) (XLalphas).

FOXM1_HUMAN
NC score	0.006504 (rank : 483)	θ value	4.03905 (rank : 233)
Query Neighborhood Hits	334	Target Neighborhood Hits	167	Shared Neighborhood Hits	9
SwissProt Accessions	Q08050, O43258, O43259, O43260, Q4ZGG7, Q9BRL2	Gene names	FOXM1, FKHL16, HFH11, MPP2, WIN
Domain Architecture
Description	Forkhead box protein M1 (Forkhead-related protein FKHL16) (Hepatocyte nuclear factor 3 forkhead homolog 11) (HNF-3/fork-head homolog 11) (HFH-11) (Winged helix factor from INS-1 cells) (M-phase phosphoprotein 2) (MPM-2 reactive phosphoprotein 2) (Transcription factor Trident).

BPAEA_HUMAN
NC score	0.005493 (rank : 484)	θ value	1.81305 (rank : 181)
Query Neighborhood Hits	334	Target Neighborhood Hits	1369	Shared Neighborhood Hits	20
SwissProt Accessions	O94833, Q5TBT0, Q8N1T8, Q8N8J3, Q8WXK9, Q96AK9, Q96DQ5, Q9H555	Gene names	DST, BPAG1, DMH, DT, KIAA0728
Domain Architecture
Description	Bullous pemphigoid antigen 1, isoforms 6/9/10 (Trabeculin-beta) (Bullous pemphigoid antigen) (BPA) (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin).

MYL3_MOUSE
NC score	0.005443 (rank : 485)	θ value	6.88961 (rank : 289)
Query Neighborhood Hits	334	Target Neighborhood Hits	70	Shared Neighborhood Hits	3
SwissProt Accessions	P09542, Q3UIF4, Q9CQZ2	Gene names	Myl3, Mlc1v, Mylc
Domain Architecture
Description	Myosin light polypeptide 3 (Myosin light chain 1, slow-twitch muscle B/ventricular isoform) (MLC1SB) (Ventricular/slow twitch myosin alkali light chain).

PP1B_HUMAN
NC score	0.005390 (rank : 486)	θ value	6.88961 (rank : 299)
Query Neighborhood Hits	334	Target Neighborhood Hits	27	Shared Neighborhood Hits	3
SwissProt Accessions	P62140, P37140, Q5U087, Q6FG45	Gene names	PPP1CB
Domain Architecture
Description	Serine/threonine-protein phosphatase PP1-beta catalytic subunit (EC 3.1.3.16) (PP-1B).

PP1B_MOUSE
NC score	0.005390 (rank : 487)	θ value	6.88961 (rank : 300)
Query Neighborhood Hits	334	Target Neighborhood Hits	27	Shared Neighborhood Hits	3
SwissProt Accessions	P62141, P37140	Gene names	Ppp1cb
Domain Architecture
Description	Serine/threonine-protein phosphatase PP1-beta catalytic subunit (EC 3.1.3.16) (PP-1B).

TXLNG_MOUSE
NC score	0.004124 (rank : 488)	θ value	6.88961 (rank : 304)
Query Neighborhood Hits	334	Target Neighborhood Hits	552	Shared Neighborhood Hits	10
SwissProt Accessions	Q8BHN1, Q8BP11	Gene names	Txlng
Domain Architecture	No domain graphic available
Description	Gamma-taxilin.

GP1BA_HUMAN
NC score	0.003386 (rank : 489)	θ value	4.03905 (rank : 234)
Query Neighborhood Hits	334	Target Neighborhood Hits	407	Shared Neighborhood Hits	9
SwissProt Accessions	P07359, Q14441, Q16469, Q8N1F3, Q8NG39, Q9HDC7, Q9UEK1, Q9UQS4	Gene names	GP1BA
Domain Architecture
Description	Platelet glycoprotein Ib alpha chain precursor (Glycoprotein Ibalpha) (GP-Ib alpha) (GPIbA) (GPIb-alpha) (Antigen CD42b-alpha) (CD42b antigen) [Contains: Glycocalicin].

DDX51_HUMAN
NC score	0.001205 (rank : 490)	θ value	8.99809 (rank : 313)
Query Neighborhood Hits	334	Target Neighborhood Hits	332	Shared Neighborhood Hits	11
SwissProt Accessions	Q8N8A6, Q5CZ71, Q8IXK5, Q96ED1	Gene names	DDX51
Domain Architecture	No domain graphic available
Description	ATP-dependent RNA helicase DDX51 (EC 3.6.1.-) (DEAD box protein 51).

TAOK3_HUMAN
NC score	0.000996 (rank : 491)	θ value	8.99809 (rank : 328)
Query Neighborhood Hits	334	Target Neighborhood Hits	1494	Shared Neighborhood Hits	18
SwissProt Accessions	Q9H2K8, Q658N1, Q8IUM4, Q9HC79, Q9NZM9, Q9UHG7	Gene names	TAOK3, DPK, JIK, KDS, MAP3K18
Domain Architecture	No domain graphic available
Description	Serine/threonine-protein kinase TAO3 (EC 2.7.11.1) (Thousand and one amino acid protein 3) (Jun kinase-inhibitory kinase) (JNK/SAPK- inhibitory kinase) (Dendritic cell-derived protein kinase) (Cutaneous T-cell lymphoma tumor antigen HD-CL-09) (CTCL tumor antigen HD-CL-09) (Kinase from chicken homolog A) (hKFC-A).

ANR25_MOUSE
NC score	0.000877 (rank : 492)	θ value	8.99809 (rank : 312)
Query Neighborhood Hits	334	Target Neighborhood Hits	398	Shared Neighborhood Hits	7
SwissProt Accessions	Q8BX02, Q8BLD5, Q91Z35	Gene names	Ankrd25
Domain Architecture	No domain graphic available
Description	Ankyrin repeat domain-containing protein 25.

CP135_HUMAN
NC score	-0.000943 (rank : 493)	θ value	6.88961 (rank : 282)
Query Neighborhood Hits	334	Target Neighborhood Hits	1290	Shared Neighborhood Hits	13
SwissProt Accessions	Q66GS9, O75130, Q9H8H7	Gene names	CEP135, CEP4, KIAA0635
Domain Architecture	No domain graphic available
Description	Centrosomal protein of 135 kDa (Cep135 protein) (Centrosomal protein 4).

TITIN_HUMAN
NC score	-0.002542 (rank : 494)	θ value	6.88961 (rank : 303)
Query Neighborhood Hits	334	Target Neighborhood Hits	2923	Shared Neighborhood Hits	47
SwissProt Accessions	Q8WZ42, Q10465, Q10466, Q15598, Q2XUS3, Q32Q60, Q4U1Z6, Q6NSG0, Q6PDB1, Q6PJP0, Q7KYM2, Q7KYN4, Q7KYN5, Q7LDM3, Q7Z2X3, Q8TCG8, Q8WZ51, Q8WZ52, Q8WZ53, Q8WZB3, Q92761, Q92762, Q9UD97, Q9UP84, Q9Y6L9	Gene names	TTN
Domain Architecture	No domain graphic available
Description	Titin (EC 2.7.11.1) (Connectin) (Rhabdomyosarcoma antigen MU-RMS- 40.14).

HIPK2_HUMAN
NC score	-0.002689 (rank : 495)	θ value	6.88961 (rank : 284)
Query Neighborhood Hits	334	Target Neighborhood Hits	845	Shared Neighborhood Hits	14
SwissProt Accessions	Q9H2X6, Q75MR7, Q8WWI4, Q9H2Y1	Gene names	HIPK2
Domain Architecture
Description	Homeodomain-interacting protein kinase 2 (EC 2.7.11.1) (hHIPk2).

TAOK3_MOUSE
NC score	-0.003103 (rank : 496)	θ value	8.99809 (rank : 329)
Query Neighborhood Hits	334	Target Neighborhood Hits	1458	Shared Neighborhood Hits	16
SwissProt Accessions	Q8BYC6, Q3V3B3	Gene names	Taok3
Domain Architecture	No domain graphic available
Description	Serine/threonine-protein kinase TAO3 (EC 2.7.11.1) (Thousand and one amino acid protein 3).

SPEG_HUMAN
NC score	-0.004108 (rank : 497)	θ value	5.27518 (rank : 269)
Query Neighborhood Hits	334	Target Neighborhood Hits	1762	Shared Neighborhood Hits	29
SwissProt Accessions	Q15772, Q27J74, Q695L1, Q6FGA6, Q6ZQW1, Q6ZTL8, Q9P2P9	Gene names	SPEG, APEG1, KIAA1297
Domain Architecture
Description	Striated muscle preferentially expressed protein kinase (EC 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1).

YSK4_HUMAN
NC score	-0.004807 (rank : 498)	θ value	5.27518 (rank : 273)
Query Neighborhood Hits	334	Target Neighborhood Hits	921	Shared Neighborhood Hits	9
SwissProt Accessions	Q56UN5, Q56UN1, Q56UN2, Q56UN3, Q56UN4, Q8N4E9, Q9H5T2	Gene names	YSK4, RCK
Domain Architecture	No domain graphic available
Description	SPS1/STE20-related protein kinase YSK4 (EC 2.7.11.1) (Regulated in COPD, protein kinase).

FER_HUMAN
NC score	-0.005621 (rank : 499)	θ value	5.27518 (rank : 254)
Query Neighborhood Hits	334	Target Neighborhood Hits	1278	Shared Neighborhood Hits	13
SwissProt Accessions	P16591	Gene names	FER, TYK3
Domain Architecture
Description	Proto-oncogene tyrosine-protein kinase FER (EC 2.7.10.2) (p94-FER) (c- FER).