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Network neighborhood for query Sequence : DLX5_MOUSE

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DLX5_MOUSE
SwissProt Accessions	P70396, O54876, O54877, O54878, Q9JJ45	Gene names	Dlx5
Domain Architecture
Description	Homeobox protein DLX-5.
Rank Plots	Jump to hits sorted by θ Jump to hits sorted by NC score

Hits sorted by θ

DLX5_MOUSE
θ value	2.17943e-171 (rank : 1)	NC score	0.999962 (rank : 1)
Query Neighborhood Hits	434	Target Neighborhood Hits	434	Shared Neighborhood Hits	434
SwissProt Accessions	P70396, O54876, O54877, O54878, Q9JJ45	Gene names	Dlx5
Domain Architecture
Description	Homeobox protein DLX-5.

DLX5_HUMAN
θ value	5.19945e-165 (rank : 2)	NC score	0.997429 (rank : 2)
Query Neighborhood Hits	434	Target Neighborhood Hits	405	Shared Neighborhood Hits	394
SwissProt Accessions	P56178, Q9UPL1	Gene names	DLX5
Domain Architecture
Description	Homeobox protein DLX-5.

DLX3_HUMAN
θ value	2.24614e-67 (rank : 3)	NC score	0.981768 (rank : 3)
Query Neighborhood Hits	434	Target Neighborhood Hits	369	Shared Neighborhood Hits	338
SwissProt Accessions	O60479	Gene names	DLX3
Domain Architecture
Description	Homeobox protein DLX-3.

DLX3_MOUSE
θ value	2.4834e-66 (rank : 4)	NC score	0.981611 (rank : 5)
Query Neighborhood Hits	434	Target Neighborhood Hits	367	Shared Neighborhood Hits	336
SwissProt Accessions	Q64205	Gene names	Dlx3
Domain Architecture
Description	Homeobox protein DLX-3.

DLX2_HUMAN
θ value	6.55044e-59 (rank : 5)	NC score	0.981751 (rank : 4)
Query Neighborhood Hits	434	Target Neighborhood Hits	355	Shared Neighborhood Hits	335
SwissProt Accessions	Q07687	Gene names	DLX2
Domain Architecture
Description	Homeobox protein DLX-2.

DLX2_MOUSE
θ value	4.24587e-58 (rank : 6)	NC score	0.981207 (rank : 6)
Query Neighborhood Hits	434	Target Neighborhood Hits	352	Shared Neighborhood Hits	334
SwissProt Accessions	P40764	Gene names	Dlx2, Tes-1, Tes1
Domain Architecture
Description	Homeobox protein DLX-2 (Homeobox protein TES-1).

DLX1_MOUSE
θ value	1.57e-36 (rank : 7)	NC score	0.967530 (rank : 9)
Query Neighborhood Hits	434	Target Neighborhood Hits	343	Shared Neighborhood Hits	333
SwissProt Accessions	Q64317	Gene names	Dlx1
Domain Architecture
Description	Homeobox protein DLX-1.

DLX1_HUMAN
θ value	4.568e-36 (rank : 8)	NC score	0.967592 (rank : 8)
Query Neighborhood Hits	434	Target Neighborhood Hits	343	Shared Neighborhood Hits	333
SwissProt Accessions	P56177, Q53ZU4, Q8IYB2	Gene names	DLX1
Domain Architecture
Description	Homeobox protein DLX-1.

DLX6_HUMAN
θ value	2.26708e-35 (rank : 9)	NC score	0.972919 (rank : 7)
Query Neighborhood Hits	434	Target Neighborhood Hits	341	Shared Neighborhood Hits	332
SwissProt Accessions	P56179, Q3ZAR6, Q9UPL2	Gene names	DLX6
Domain Architecture
Description	Homeobox protein DLX-6.

DLX4_MOUSE
θ value	2.27234e-27 (rank : 10)	NC score	0.954250 (rank : 11)
Query Neighborhood Hits	434	Target Neighborhood Hits	352	Shared Neighborhood Hits	321
SwissProt Accessions	P70436, Q3UM51, Q8R4I3	Gene names	Dlx4, Dlx7
Domain Architecture
Description	Homeobox protein DLX-4 (DLX-7).

DLX4_HUMAN
θ value	1.12775e-26 (rank : 11)	NC score	0.954654 (rank : 10)
Query Neighborhood Hits	434	Target Neighborhood Hits	350	Shared Neighborhood Hits	323
SwissProt Accessions	Q92988, O60480, Q13265, Q6PJK0, Q9HBE0	Gene names	DLX4, BP1, DLX7, DLX8
Domain Architecture	No domain graphic available
Description	Homeobox protein DLX-4 (DLX-7) (DLX-8) (Beta protein 1).

MSX2_HUMAN
θ value	1.02238e-19 (rank : 12)	NC score	0.927661 (rank : 14)
Query Neighborhood Hits	434	Target Neighborhood Hits	337	Shared Neighborhood Hits	323
SwissProt Accessions	P35548	Gene names	MSX2, HOX8
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8).

MSX2_MOUSE
θ value	2.5182e-18 (rank : 13)	NC score	0.924920 (rank : 18)
Query Neighborhood Hits	434	Target Neighborhood Hits	345	Shared Neighborhood Hits	322
SwissProt Accessions	Q03358, Q63856	Gene names	Msx2, Hox-8.1, Msx-2
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8.1).

BSH_MOUSE
θ value	1.52774e-15 (rank : 14)	NC score	0.937047 (rank : 12)
Query Neighborhood Hits	434	Target Neighborhood Hits	349	Shared Neighborhood Hits	325
SwissProt Accessions	Q810B3	Gene names	Bsx
Domain Architecture	No domain graphic available
Description	Brain-specific homeobox protein homolog.

BARX2_HUMAN
θ value	2.60593e-15 (rank : 15)	NC score	0.921952 (rank : 22)
Query Neighborhood Hits	434	Target Neighborhood Hits	387	Shared Neighborhood Hits	320
SwissProt Accessions	Q9UMQ3, O43518	Gene names	BARX2
Domain Architecture
Description	Homeobox protein BarH-like 2.

BARX2_MOUSE
θ value	2.60593e-15 (rank : 16)	NC score	0.925351 (rank : 17)
Query Neighborhood Hits	434	Target Neighborhood Hits	335	Shared Neighborhood Hits	317
SwissProt Accessions	O08686	Gene names	Barx2
Domain Architecture
Description	Homeobox protein BarH-like 2.

MSX1_HUMAN
θ value	4.44505e-15 (rank : 17)	NC score	0.924066 (rank : 20)
Query Neighborhood Hits	434	Target Neighborhood Hits	374	Shared Neighborhood Hits	321
SwissProt Accessions	P28360, Q96NY4	Gene names	MSX1, HOX7
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7).

MSX1_MOUSE
θ value	4.44505e-15 (rank : 18)	NC score	0.925403 (rank : 16)
Query Neighborhood Hits	434	Target Neighborhood Hits	322	Shared Neighborhood Hits	317
SwissProt Accessions	P13297	Gene names	Msx1, Hox7, Hox7.1
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7) (Hox- 7.1).

MSX3_MOUSE
θ value	4.44505e-15 (rank : 19)	NC score	0.931793 (rank : 13)
Query Neighborhood Hits	434	Target Neighborhood Hits	330	Shared Neighborhood Hits	317
SwissProt Accessions	P70354, P70246, Q03360, Q80W10	Gene names	Msx3, Msx-3
Domain Architecture
Description	Homeobox protein MSX-3.

DBX1_MOUSE
θ value	5.8054e-15 (rank : 20)	NC score	0.920495 (rank : 23)
Query Neighborhood Hits	434	Target Neighborhood Hits	346	Shared Neighborhood Hits	319
SwissProt Accessions	P52950	Gene names	Dbx1, Dbx
Domain Architecture
Description	Homeobox protein DBX1.

HXA4_MOUSE
θ value	9.90251e-15 (rank : 21)	NC score	0.858123 (rank : 124)
Query Neighborhood Hits	434	Target Neighborhood Hits	379	Shared Neighborhood Hits	316
SwissProt Accessions	P06798, Q61684, Q64388, Q8BPE6	Gene names	Hoxa4, Hox-1.4, Hoxa-4
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1.4) (Homeobox protein MH-3).

HXB1_HUMAN
θ value	1.68911e-14 (rank : 22)	NC score	0.892677 (rank : 58)
Query Neighborhood Hits	434	Target Neighborhood Hits	356	Shared Neighborhood Hits	324
SwissProt Accessions	P14653	Gene names	HOXB1, HOX2I
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2I).

NKX23_HUMAN
θ value	2.20605e-14 (rank : 23)	NC score	0.905783 (rank : 43)
Query Neighborhood Hits	434	Target Neighborhood Hits	346	Shared Neighborhood Hits	327
SwissProt Accessions	Q8TAU0, Q9NYS6	Gene names	NKX2-3, NKX23, NKX2C
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NKX-2.3) (Homeobox protein NK-2 homolog C).

NKX23_MOUSE
θ value	2.88119e-14 (rank : 24)	NC score	0.904414 (rank : 45)
Query Neighborhood Hits	434	Target Neighborhood Hits	340	Shared Neighborhood Hits	323
SwissProt Accessions	P97334, Q9QZ60, Q9WV67	Gene names	Nkx2-3, Nkx-2.3, Nkx2c
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NK-2 homolog C) (Nkx2-C) (Homeobox protein NK-2 homolog 3).

BARX1_HUMAN
θ value	3.76295e-14 (rank : 25)	NC score	0.926063 (rank : 15)
Query Neighborhood Hits	434	Target Neighborhood Hits	326	Shared Neighborhood Hits	311
SwissProt Accessions	Q9HBU1	Gene names	BARX1
Domain Architecture
Description	Homeobox protein BarH-like 1.

BARX1_MOUSE
θ value	3.76295e-14 (rank : 26)	NC score	0.924752 (rank : 19)
Query Neighborhood Hits	434	Target Neighborhood Hits	324	Shared Neighborhood Hits	311
SwissProt Accessions	Q9ER42, O09066, P70159, Q9ERV2	Gene names	Barx1
Domain Architecture
Description	Homeobox protein BarH-like 1.

NKX32_HUMAN
θ value	1.09485e-13 (rank : 27)	NC score	0.910352 (rank : 30)
Query Neighborhood Hits	434	Target Neighborhood Hits	323	Shared Neighborhood Hits	315
SwissProt Accessions	P78367	Gene names	BAPX1, NKX3B
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

BARH1_MOUSE
θ value	1.86753e-13 (rank : 28)	NC score	0.910295 (rank : 31)
Query Neighborhood Hits	434	Target Neighborhood Hits	350	Shared Neighborhood Hits	327
SwissProt Accessions	P63157, Q9JK26	Gene names	Barhl1, Bhx1, Mbh2
Domain Architecture	No domain graphic available
Description	BarH-like 1 homeobox protein (Bar-class homeodomain protein MBH2) (BarH-related homeobox protein 1).

PROP1_MOUSE
θ value	1.86753e-13 (rank : 29)	NC score	0.848244 (rank : 148)
Query Neighborhood Hits	434	Target Neighborhood Hits	361	Shared Neighborhood Hits	333
SwissProt Accessions	P97458	Gene names	Prop1, Prop-1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

PROP1_HUMAN
θ value	3.18553e-13 (rank : 30)	NC score	0.860191 (rank : 119)
Query Neighborhood Hits	434	Target Neighborhood Hits	354	Shared Neighborhood Hits	335
SwissProt Accessions	O75360	Gene names	PROP1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

ARX_HUMAN
θ value	4.16044e-13 (rank : 31)	NC score	0.872572 (rank : 107)
Query Neighborhood Hits	434	Target Neighborhood Hits	401	Shared Neighborhood Hits	327
SwissProt Accessions	Q96QS3	Gene names	ARX
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

ARX_MOUSE
θ value	4.16044e-13 (rank : 32)	NC score	0.871236 (rank : 108)
Query Neighborhood Hits	434	Target Neighborhood Hits	398	Shared Neighborhood Hits	327
SwissProt Accessions	O35085, Q9QYT4	Gene names	Arx
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

HXA1_HUMAN
θ value	4.16044e-13 (rank : 33)	NC score	0.887600 (rank : 80)
Query Neighborhood Hits	434	Target Neighborhood Hits	334	Shared Neighborhood Hits	320
SwissProt Accessions	P49639, O43363	Gene names	HOXA1, HOX1F
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1F).

HXB2_HUMAN
θ value	4.16044e-13 (rank : 34)	NC score	0.878295 (rank : 104)
Query Neighborhood Hits	434	Target Neighborhood Hits	367	Shared Neighborhood Hits	315
SwissProt Accessions	P14652, P10913, P17485	Gene names	HOXB2, HOX2H
Domain Architecture
Description	Homeobox protein Hox-B2 (Hox-2H) (Hox-2.8) (K8).

NKX22_HUMAN
θ value	4.16044e-13 (rank : 35)	NC score	0.894813 (rank : 55)
Query Neighborhood Hits	434	Target Neighborhood Hits	342	Shared Neighborhood Hits	327
SwissProt Accessions	O95096	Gene names	NKX2-2, NKX2.2, NKX2B
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

NKX24_HUMAN
θ value	5.43371e-13 (rank : 36)	NC score	0.888176 (rank : 77)
Query Neighborhood Hits	434	Target Neighborhood Hits	366	Shared Neighborhood Hits	324
SwissProt Accessions	Q9H2Z4	Gene names	NKX2-4, NKX2D
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

NKX28_MOUSE
θ value	5.43371e-13 (rank : 37)	NC score	0.913580 (rank : 25)
Query Neighborhood Hits	434	Target Neighborhood Hits	347	Shared Neighborhood Hits	334
SwissProt Accessions	O70584	Gene names	Nkx2-8, Nkx-2.9, Nkx2-9, Nkx2h
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H) (Homeobox protein Nkx-2.9).

HXA3_HUMAN
θ value	7.09661e-13 (rank : 38)	NC score	0.866383 (rank : 113)
Query Neighborhood Hits	434	Target Neighborhood Hits	535	Shared Neighborhood Hits	335
SwissProt Accessions	O43365	Gene names	HOXA3, HOX1E
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1E).

BARH1_HUMAN
θ value	9.26847e-13 (rank : 39)	NC score	0.909017 (rank : 35)
Query Neighborhood Hits	434	Target Neighborhood Hits	373	Shared Neighborhood Hits	329
SwissProt Accessions	Q9BZE3, Q9NY88	Gene names	BARHL1
Domain Architecture
Description	BarH-like 1 homeobox protein.

HXA3_MOUSE
θ value	1.2105e-12 (rank : 40)	NC score	0.864934 (rank : 115)
Query Neighborhood Hits	434	Target Neighborhood Hits	558	Shared Neighborhood Hits	338
SwissProt Accessions	P02831, Q4V9Z8, Q61197	Gene names	Hoxa3, Hox-1.5, Hoxa-3
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1.5) (MO-10).

HXB1_MOUSE
θ value	1.2105e-12 (rank : 41)	NC score	0.892634 (rank : 59)
Query Neighborhood Hits	434	Target Neighborhood Hits	341	Shared Neighborhood Hits	325
SwissProt Accessions	P17919, Q3ZAY6, Q9CYH3	Gene names	Hoxb1, Hox-2.9, Hoxb-1
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2.9).

NKX22_MOUSE
θ value	1.2105e-12 (rank : 42)	NC score	0.894445 (rank : 56)
Query Neighborhood Hits	434	Target Neighborhood Hits	336	Shared Neighborhood Hits	327
SwissProt Accessions	P42586	Gene names	Nkx2-2, Nkx-2.2, Nkx2b
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

HXA1_MOUSE
θ value	2.0648e-12 (rank : 43)	NC score	0.887886 (rank : 79)
Query Neighborhood Hits	434	Target Neighborhood Hits	341	Shared Neighborhood Hits	322
SwissProt Accessions	P09022, P15463	Gene names	Hoxa1, Era-1, Hox-1.6, Hoxa-1
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399).

HXC9_HUMAN
θ value	2.0648e-12 (rank : 44)	NC score	0.829796 (rank : 196)
Query Neighborhood Hits	434	Target Neighborhood Hits	339	Shared Neighborhood Hits	313
SwissProt Accessions	P31274, Q9H1I0	Gene names	HOXC9, HOX3B
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3B).

HXC9_MOUSE
θ value	2.0648e-12 (rank : 45)	NC score	0.829829 (rank : 195)
Query Neighborhood Hits	434	Target Neighborhood Hits	338	Shared Neighborhood Hits	313
SwissProt Accessions	P09633	Gene names	Hoxc9, Hox-3.2, Hoxc-9
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3.2).

NKX24_MOUSE
θ value	2.0648e-12 (rank : 46)	NC score	0.889265 (rank : 73)
Query Neighborhood Hits	434	Target Neighborhood Hits	356	Shared Neighborhood Hits	321
SwissProt Accessions	Q9EQM3, Q9EQM4	Gene names	Nkx2-4, Nkx2d
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

NKX25_HUMAN
θ value	2.0648e-12 (rank : 47)	NC score	0.903684 (rank : 46)
Query Neighborhood Hits	434	Target Neighborhood Hits	338	Shared Neighborhood Hits	324
SwissProt Accessions	P52952	Gene names	NKX2-5, CSX, NKX2.5, NKX2E
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

CDX1_MOUSE
θ value	2.69671e-12 (rank : 48)	NC score	0.891779 (rank : 61)
Query Neighborhood Hits	434	Target Neighborhood Hits	379	Shared Neighborhood Hits	306
SwissProt Accessions	P18111, Q8VCF7	Gene names	Cdx1, Cdx-1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

EVX2_MOUSE
θ value	4.59992e-12 (rank : 49)	NC score	0.890066 (rank : 68)
Query Neighborhood Hits	434	Target Neighborhood Hits	327	Shared Neighborhood Hits	316
SwissProt Accessions	P49749	Gene names	Evx2, Evx-2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

HLXB9_HUMAN
θ value	4.59992e-12 (rank : 50)	NC score	0.914199 (rank : 24)
Query Neighborhood Hits	434	Target Neighborhood Hits	336	Shared Neighborhood Hits	324
SwissProt Accessions	P50219, Q9Y648	Gene names	HLXB9
Domain Architecture
Description	Homeobox protein HB9.

NKX25_MOUSE
θ value	4.59992e-12 (rank : 51)	NC score	0.902107 (rank : 50)
Query Neighborhood Hits	434	Target Neighborhood Hits	347	Shared Neighborhood Hits	325
SwissProt Accessions	P42582, P97335	Gene names	Nkx2-5, Csx, Nkx-2.5, Nkx2e
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

NKX32_MOUSE
θ value	4.59992e-12 (rank : 52)	NC score	0.907204 (rank : 41)
Query Neighborhood Hits	434	Target Neighborhood Hits	326	Shared Neighborhood Hits	314
SwissProt Accessions	P97503	Gene names	Bapx1, Nkx-3.2, Nkx3-2, Nkx3b
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

HLXB9_MOUSE
θ value	6.00763e-12 (rank : 53)	NC score	0.912996 (rank : 26)
Query Neighborhood Hits	434	Target Neighborhood Hits	354	Shared Neighborhood Hits	327
SwissProt Accessions	Q9QZW9	Gene names	Hlxb9
Domain Architecture
Description	Homeobox protein HB9.

HXA11_HUMAN
θ value	6.00763e-12 (rank : 54)	NC score	0.857372 (rank : 128)
Query Neighborhood Hits	434	Target Neighborhood Hits	334	Shared Neighborhood Hits	309
SwissProt Accessions	P31270	Gene names	HOXA11, HOX1I
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1I).

HXA4_HUMAN
θ value	6.00763e-12 (rank : 55)	NC score	0.855586 (rank : 133)
Query Neighborhood Hits	434	Target Neighborhood Hits	370	Shared Neighborhood Hits	313
SwissProt Accessions	Q00056, O43366	Gene names	HOXA4, HOX1D
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4).

NKX12_MOUSE
θ value	6.00763e-12 (rank : 56)	NC score	0.922313 (rank : 21)
Query Neighborhood Hits	434	Target Neighborhood Hits	332	Shared Neighborhood Hits	310
SwissProt Accessions	P42580, Q9JHF2, Q9JKW5, Q9JKW6, Q9JKW9, Q9JKX0, Q9JKX1	Gene names	Nkx1-2, Nkx1.1, Sax1
Domain Architecture
Description	NK1 transcription factor-related protein 2 (Homeobox protein SAX-1) (NKX-1.1).

CDX2_MOUSE
θ value	7.84624e-12 (rank : 57)	NC score	0.887305 (rank : 81)
Query Neighborhood Hits	434	Target Neighborhood Hits	336	Shared Neighborhood Hits	308
SwissProt Accessions	P43241	Gene names	Cdx2, Cdx-2
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2).

HXB2_MOUSE
θ value	7.84624e-12 (rank : 58)	NC score	0.884044 (rank : 91)
Query Neighborhood Hits	434	Target Neighborhood Hits	350	Shared Neighborhood Hits	313
SwissProt Accessions	P0C1T1	Gene names	Hoxb2, Hox-2.8
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-B2 (Hox-2.8).

NKX26_MOUSE
θ value	1.02475e-11 (rank : 59)	NC score	0.909463 (rank : 34)
Query Neighborhood Hits	434	Target Neighborhood Hits	343	Shared Neighborhood Hits	317
SwissProt Accessions	P43688	Gene names	Nkx2-6, Nkx-2.6, Nkx2f
Domain Architecture
Description	Homeobox protein Nkx-2.6 (Homeobox protein NK-2 homolog F).

VAX2_HUMAN
θ value	1.02475e-11 (rank : 60)	NC score	0.903646 (rank : 47)
Query Neighborhood Hits	434	Target Neighborhood Hits	337	Shared Neighborhood Hits	319
SwissProt Accessions	Q9UIW0	Gene names	VAX2
Domain Architecture
Description	Ventral anterior homeobox 2.

VAX2_MOUSE
θ value	1.02475e-11 (rank : 61)	NC score	0.903119 (rank : 48)
Query Neighborhood Hits	434	Target Neighborhood Hits	338	Shared Neighborhood Hits	320
SwissProt Accessions	Q9WTP9	Gene names	Vax2, Vex
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 2 (Ventral retina homeodomain protein).

ALX3_MOUSE
θ value	1.33837e-11 (rank : 62)	NC score	0.838938 (rank : 165)
Query Neighborhood Hits	434	Target Neighborhood Hits	386	Shared Neighborhood Hits	335
SwissProt Accessions	O70137	Gene names	Alx3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

HXA11_MOUSE
θ value	1.33837e-11 (rank : 63)	NC score	0.852939 (rank : 136)
Query Neighborhood Hits	434	Target Neighborhood Hits	327	Shared Neighborhood Hits	309
SwissProt Accessions	P31311, Q3V026	Gene names	Hoxa11, Hox-1.9, Hoxa-11
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1.9).

NKX28_HUMAN
θ value	1.33837e-11 (rank : 64)	NC score	0.911426 (rank : 28)
Query Neighborhood Hits	434	Target Neighborhood Hits	352	Shared Neighborhood Hits	335
SwissProt Accessions	O15522	Gene names	NKX2-8, NKX-2.8, NKX2G, NKX2H
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H).

NKX31_HUMAN
θ value	1.33837e-11 (rank : 65)	NC score	0.910860 (rank : 29)
Query Neighborhood Hits	434	Target Neighborhood Hits	331	Shared Neighborhood Hits	313
SwissProt Accessions	Q99801, O15465, Q9H2P4, Q9H2P5, Q9H2P6, Q9H2P7, Q9HBG0	Gene names	NKX3-1, NKX3.1, NKX3A
Domain Architecture
Description	Homeobox protein Nkx-3.1.

BARH2_HUMAN
θ value	1.74796e-11 (rank : 66)	NC score	0.901116 (rank : 51)
Query Neighborhood Hits	434	Target Neighborhood Hits	419	Shared Neighborhood Hits	328
SwissProt Accessions	Q9NY43, Q7Z4N7	Gene names	BARHL2
Domain Architecture
Description	BarH-like 2 homeobox protein.

BARH2_MOUSE
θ value	1.74796e-11 (rank : 67)	NC score	0.902929 (rank : 49)
Query Neighborhood Hits	434	Target Neighborhood Hits	397	Shared Neighborhood Hits	327
SwissProt Accessions	Q8VIB5, Q66L43	Gene names	Barhl2, Barh1, Mbh1
Domain Architecture	No domain graphic available
Description	BarH-like 2 homeobox protein (Bar-class homeodomain protein MBH1) (Homeobox protein B-H1).

CDX1_HUMAN
θ value	1.74796e-11 (rank : 68)	NC score	0.890245 (rank : 66)
Query Neighborhood Hits	434	Target Neighborhood Hits	382	Shared Neighborhood Hits	313
SwissProt Accessions	P47902, Q4VAU4, Q9NYK8	Gene names	CDX1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

CDX2_HUMAN
θ value	1.74796e-11 (rank : 69)	NC score	0.886124 (rank : 84)
Query Neighborhood Hits	434	Target Neighborhood Hits	330	Shared Neighborhood Hits	306
SwissProt Accessions	Q99626, O00503, Q969L8	Gene names	CDX2, CDX3
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2) (CDX-3).

NKX61_HUMAN
θ value	1.74796e-11 (rank : 70)	NC score	0.910216 (rank : 32)
Query Neighborhood Hits	434	Target Neighborhood Hits	431	Shared Neighborhood Hits	330
SwissProt Accessions	P78426	Gene names	NKX6-1, NKX6A
Domain Architecture
Description	Homeobox protein Nkx-6.1.

NKX61_MOUSE
θ value	1.74796e-11 (rank : 71)	NC score	0.909933 (rank : 33)
Query Neighborhood Hits	434	Target Neighborhood Hits	439	Shared Neighborhood Hits	330
SwissProt Accessions	Q99MA9, Q9ERQ7	Gene names	Nkx6-1, Nkx6.1, Nkx6a
Domain Architecture
Description	Homeobox protein Nkx-6.1.

TLX2_MOUSE
θ value	1.74796e-11 (rank : 72)	NC score	0.890298 (rank : 65)
Query Neighborhood Hits	434	Target Neighborhood Hits	336	Shared Neighborhood Hits	316
SwissProt Accessions	Q61663	Gene names	Tlx2, Hox11l1, Tlx1l1
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Homeobox TLX-2) (PMUR10F).

TLX3_HUMAN
θ value	2.28291e-11 (rank : 73)	NC score	0.880127 (rank : 99)
Query Neighborhood Hits	434	Target Neighborhood Hits	403	Shared Neighborhood Hits	327
SwissProt Accessions	O43711, Q96AD3	Gene names	TLX3, HOX11L2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox protein Hox-11L2).

TLX3_MOUSE
θ value	2.28291e-11 (rank : 74)	NC score	0.886119 (rank : 85)
Query Neighborhood Hits	434	Target Neighborhood Hits	346	Shared Neighborhood Hits	324
SwissProt Accessions	O55144	Gene names	Tlx3, Hox11l2, Rnx, Tlx1l2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox TLX-3) (Homeobox protein Hox-11L2) (Respiratory neuron homeobox protein).

EVX2_HUMAN
θ value	2.98157e-11 (rank : 75)	NC score	0.889309 (rank : 72)
Query Neighborhood Hits	434	Target Neighborhood Hits	325	Shared Neighborhood Hits	313
SwissProt Accessions	Q03828	Gene names	EVX2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

MEOX1_HUMAN
θ value	2.98157e-11 (rank : 76)	NC score	0.890716 (rank : 63)
Query Neighborhood Hits	434	Target Neighborhood Hits	342	Shared Neighborhood Hits	319
SwissProt Accessions	P50221	Gene names	MEOX1, MOX1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

HMX3_MOUSE
θ value	3.89403e-11 (rank : 77)	NC score	0.908745 (rank : 36)
Query Neighborhood Hits	434	Target Neighborhood Hits	342	Shared Neighborhood Hits	324
SwissProt Accessions	P42581	Gene names	Hmx3, Nkx-5.1, Nkx5-1
Domain Architecture
Description	Homeobox protein HMX3 (Homeobox protein Nkx-5.1).

NKX31_MOUSE
θ value	5.08577e-11 (rank : 78)	NC score	0.904454 (rank : 44)
Query Neighborhood Hits	434	Target Neighborhood Hits	379	Shared Neighborhood Hits	315
SwissProt Accessions	P97436, O09087	Gene names	Nkx3-1, Nkx-3.1, Nkx3a
Domain Architecture
Description	Homeobox protein Nkx-3.1.

TLX2_HUMAN
θ value	5.08577e-11 (rank : 79)	NC score	0.888978 (rank : 74)
Query Neighborhood Hits	434	Target Neighborhood Hits	352	Shared Neighborhood Hits	318
SwissProt Accessions	O43763, Q9UQ48	Gene names	TLX2, HOX11L1, NCX
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Neural crest homeobox protein).

ALX4_MOUSE
θ value	6.64225e-11 (rank : 80)	NC score	0.848302 (rank : 147)
Query Neighborhood Hits	434	Target Neighborhood Hits	369	Shared Neighborhood Hits	337
SwissProt Accessions	O35137	Gene names	Alx4
Domain Architecture
Description	Homeobox protein aristaless-like 4 (ALX-4).

TLX1_HUMAN
θ value	6.64225e-11 (rank : 81)	NC score	0.881523 (rank : 95)
Query Neighborhood Hits	434	Target Neighborhood Hits	347	Shared Neighborhood Hits	321
SwissProt Accessions	P31314, O75699, Q9HCA0	Gene names	TLX1, HOX11, TCL3
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (TCL-3 proto-oncogene).

TLX1_MOUSE
θ value	6.64225e-11 (rank : 82)	NC score	0.880113 (rank : 100)
Query Neighborhood Hits	434	Target Neighborhood Hits	347	Shared Neighborhood Hits	320
SwissProt Accessions	P43345	Gene names	Tlx1, Hox11, Tlx-1
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (Homeobox TLX-1).

HME1_HUMAN
θ value	8.67504e-11 (rank : 83)	NC score	0.886412 (rank : 83)
Query Neighborhood Hits	434	Target Neighborhood Hits	384	Shared Neighborhood Hits	322
SwissProt Accessions	Q05925	Gene names	EN1
Domain Architecture
Description	Homeobox protein engrailed-1 (Hu-En-1).

HXD3_HUMAN
θ value	8.67504e-11 (rank : 84)	NC score	0.869578 (rank : 110)
Query Neighborhood Hits	434	Target Neighborhood Hits	433	Shared Neighborhood Hits	322
SwissProt Accessions	P31249, Q99955, Q9BSC5	Gene names	HOXD3, HOX4A
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4A).

TITF1_HUMAN
θ value	1.133e-10 (rank : 85)	NC score	0.885456 (rank : 88)
Query Neighborhood Hits	434	Target Neighborhood Hits	332	Shared Neighborhood Hits	321
SwissProt Accessions	P43699, O14954, O14955, Q9BRJ8	Gene names	TITF1, NKX2-1, NKX2A, TTF1
Domain Architecture
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1) (Homeobox protein NK-2 homolog A).

ALX4_HUMAN
θ value	1.47974e-10 (rank : 86)	NC score	0.847118 (rank : 153)
Query Neighborhood Hits	434	Target Neighborhood Hits	394	Shared Neighborhood Hits	337
SwissProt Accessions	Q9H161, Q96JN7, Q9H198, Q9HAY9	Gene names	ALX4, KIAA1788
Domain Architecture
Description	Homeobox protein aristaless-like 4.

CDX4_HUMAN
θ value	1.47974e-10 (rank : 87)	NC score	0.889406 (rank : 71)
Query Neighborhood Hits	434	Target Neighborhood Hits	366	Shared Neighborhood Hits	323
SwissProt Accessions	O14627, Q5JS20	Gene names	CDX4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

EMX1_HUMAN
θ value	1.47974e-10 (rank : 88)	NC score	0.912623 (rank : 27)
Query Neighborhood Hits	434	Target Neighborhood Hits	336	Shared Neighborhood Hits	326
SwissProt Accessions	Q04741, Q86XB0	Gene names	EMX1
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty spiracles- like protein 1).

EMX2_HUMAN
θ value	1.47974e-10 (rank : 89)	NC score	0.908708 (rank : 37)
Query Neighborhood Hits	434	Target Neighborhood Hits	341	Shared Neighborhood Hits	328
SwissProt Accessions	Q04743, Q96NN8, Q9BQF4	Gene names	EMX2
Domain Architecture
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

HHEX_MOUSE
θ value	1.47974e-10 (rank : 90)	NC score	0.896316 (rank : 54)
Query Neighborhood Hits	434	Target Neighborhood Hits	350	Shared Neighborhood Hits	316
SwissProt Accessions	P43120	Gene names	Hhex, Prhx
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

HXB3_HUMAN
θ value	1.47974e-10 (rank : 91)	NC score	0.852934 (rank : 137)
Query Neighborhood Hits	434	Target Neighborhood Hits	559	Shared Neighborhood Hits	341
SwissProt Accessions	P14651, O95615, P17484	Gene names	HOXB3, HOX2G
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7).

HXB3_MOUSE
θ value	1.47974e-10 (rank : 92)	NC score	0.859300 (rank : 120)
Query Neighborhood Hits	434	Target Neighborhood Hits	493	Shared Neighborhood Hits	333
SwissProt Accessions	P09026, P10285, Q4PJ06, Q61680	Gene names	Hoxb3, Hox-2.7, Hoxb-3
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2.7) (Homeobox protein MH-23).

TITF1_MOUSE
θ value	1.47974e-10 (rank : 93)	NC score	0.887285 (rank : 82)
Query Neighborhood Hits	434	Target Neighborhood Hits	335	Shared Neighborhood Hits	321
SwissProt Accessions	P50220	Gene names	Titf1, Nkx-2.1, Nkx2-1, Ttf1
Domain Architecture	No domain graphic available
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1).

EMX2_MOUSE
θ value	1.9326e-10 (rank : 94)	NC score	0.908701 (rank : 38)
Query Neighborhood Hits	434	Target Neighborhood Hits	340	Shared Neighborhood Hits	328
SwissProt Accessions	Q04744, Q80UE7	Gene names	Emx2, Emx-2
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

EVX1_HUMAN
θ value	1.9326e-10 (rank : 95)	NC score	0.882630 (rank : 94)
Query Neighborhood Hits	434	Target Neighborhood Hits	349	Shared Neighborhood Hits	317
SwissProt Accessions	P49640	Gene names	EVX1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

HXD3_MOUSE
θ value	1.9326e-10 (rank : 96)	NC score	0.870107 (rank : 109)
Query Neighborhood Hits	434	Target Neighborhood Hits	435	Shared Neighborhood Hits	325
SwissProt Accessions	P09027, Q3UUD3	Gene names	Hoxd3, Hox-4.1, Hoxd-3
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4.1) (Homeobox protein MH-19).

CDX4_MOUSE
θ value	2.52405e-10 (rank : 97)	NC score	0.883233 (rank : 93)
Query Neighborhood Hits	434	Target Neighborhood Hits	378	Shared Neighborhood Hits	319
SwissProt Accessions	Q07424	Gene names	Cdx4, Cdx-4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

GBX1_MOUSE
θ value	2.52405e-10 (rank : 98)	NC score	0.892461 (rank : 60)
Query Neighborhood Hits	434	Target Neighborhood Hits	350	Shared Neighborhood Hits	299
SwissProt Accessions	P82976, Q8CGW5	Gene names	Gbx1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

HME1_MOUSE
θ value	2.52405e-10 (rank : 99)	NC score	0.886050 (rank : 86)
Query Neighborhood Hits	434	Target Neighborhood Hits	397	Shared Neighborhood Hits	321
SwissProt Accessions	P09065	Gene names	En1, En-1
Domain Architecture
Description	Homeobox protein engrailed-1 (Mo-En-1).

ALX3_HUMAN
θ value	4.30538e-10 (rank : 100)	NC score	0.837115 (rank : 175)
Query Neighborhood Hits	434	Target Neighborhood Hits	380	Shared Neighborhood Hits	336
SwissProt Accessions	O95076, O95075	Gene names	ALX3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

HME2_HUMAN
θ value	5.62301e-10 (rank : 101)	NC score	0.889949 (rank : 69)
Query Neighborhood Hits	434	Target Neighborhood Hits	355	Shared Neighborhood Hits	326
SwissProt Accessions	P19622	Gene names	EN2
Domain Architecture
Description	Homeobox protein engrailed-2 (Hu-En-2).

HME2_MOUSE
θ value	5.62301e-10 (rank : 102)	NC score	0.888664 (rank : 75)
Query Neighborhood Hits	434	Target Neighborhood Hits	352	Shared Neighborhood Hits	327
SwissProt Accessions	P09066	Gene names	En2, En-2
Domain Architecture
Description	Homeobox protein engrailed-2 (Mo-En-2).

HXA2_HUMAN
θ value	5.62301e-10 (rank : 103)	NC score	0.873930 (rank : 106)
Query Neighborhood Hits	434	Target Neighborhood Hits	370	Shared Neighborhood Hits	315
SwissProt Accessions	O43364	Gene names	HOXA2
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A2.

PAX3_MOUSE
θ value	5.62301e-10 (rank : 104)	NC score	0.740048 (rank : 232)
Query Neighborhood Hits	434	Target Neighborhood Hits	478	Shared Neighborhood Hits	340
SwissProt Accessions	P24610, Q3UFQ9, Q8BRE7, Q9CXI6	Gene names	Pax3, Pax-3
Domain Architecture
Description	Paired box protein Pax-3.

LBX1_MOUSE
θ value	7.34386e-10 (rank : 105)	NC score	0.907517 (rank : 40)
Query Neighborhood Hits	434	Target Neighborhood Hits	349	Shared Neighborhood Hits	326
SwissProt Accessions	P52955	Gene names	Lbx1, Lbx1h
Domain Architecture
Description	Transcription factor LBX1.

MEOX1_MOUSE
θ value	7.34386e-10 (rank : 106)	NC score	0.890184 (rank : 67)
Query Neighborhood Hits	434	Target Neighborhood Hits	345	Shared Neighborhood Hits	324
SwissProt Accessions	P32442	Gene names	Meox1, Mox-1, Mox1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

VAX1_HUMAN
θ value	7.34386e-10 (rank : 107)	NC score	0.898375 (rank : 52)
Query Neighborhood Hits	434	Target Neighborhood Hits	355	Shared Neighborhood Hits	324
SwissProt Accessions	Q5SQQ9, Q6ZSX0	Gene names	VAX1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

GBX1_HUMAN
θ value	9.59137e-10 (rank : 108)	NC score	0.893931 (rank : 57)
Query Neighborhood Hits	434	Target Neighborhood Hits	334	Shared Neighborhood Hits	300
SwissProt Accessions	Q14549	Gene names	GBX1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

HLX1_HUMAN
θ value	9.59137e-10 (rank : 109)	NC score	0.884469 (rank : 89)
Query Neighborhood Hits	434	Target Neighborhood Hits	370	Shared Neighborhood Hits	309
SwissProt Accessions	Q14774, Q15988	Gene names	HLX1
Domain Architecture
Description	Homeobox protein HLX1 (Homeobox protein HB24).

LBX1_HUMAN
θ value	9.59137e-10 (rank : 110)	NC score	0.906931 (rank : 42)
Query Neighborhood Hits	434	Target Neighborhood Hits	357	Shared Neighborhood Hits	328
SwissProt Accessions	P52954	Gene names	LBX1
Domain Architecture
Description	Transcription factor LBX1.

PAX3_HUMAN
θ value	9.59137e-10 (rank : 111)	NC score	0.740195 (rank : 231)
Query Neighborhood Hits	434	Target Neighborhood Hits	513	Shared Neighborhood Hits	344
SwissProt Accessions	P23760, Q16448	Gene names	PAX3, HUP2
Domain Architecture
Description	Paired box protein Pax-3 (HUP2).

EVX1_MOUSE
θ value	1.25267e-09 (rank : 112)	NC score	0.885899 (rank : 87)
Query Neighborhood Hits	434	Target Neighborhood Hits	350	Shared Neighborhood Hits	319
SwissProt Accessions	P23683	Gene names	Evx1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

MEOX2_MOUSE
θ value	1.25267e-09 (rank : 113)	NC score	0.888653 (rank : 76)
Query Neighborhood Hits	434	Target Neighborhood Hits	341	Shared Neighborhood Hits	317
SwissProt Accessions	P32443, Q544T6	Gene names	Meox2, Gax, Mox-2, Mox2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2).

PHX2A_MOUSE
θ value	1.25267e-09 (rank : 114)	NC score	0.857317 (rank : 129)
Query Neighborhood Hits	434	Target Neighborhood Hits	338	Shared Neighborhood Hits	320
SwissProt Accessions	Q62066	Gene names	Phox2a, Arix, Phox2, Pmx2, Pmx2a
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (PHOX2A homeodomain protein) (Aristaless homeobox protein homolog).

GBX2_HUMAN
θ value	1.63604e-09 (rank : 115)	NC score	0.890311 (rank : 64)
Query Neighborhood Hits	434	Target Neighborhood Hits	322	Shared Neighborhood Hits	304
SwissProt Accessions	P52951, O43833, Q53RX5, Q9Y5Y1	Gene names	GBX2
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2).

GBX2_MOUSE
θ value	1.63604e-09 (rank : 116)	NC score	0.889597 (rank : 70)
Query Neighborhood Hits	434	Target Neighborhood Hits	326	Shared Neighborhood Hits	302
SwissProt Accessions	P48031	Gene names	Gbx2, Mmoxa, Stra7
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2) (Homeobox protein STRA7).

HXA2_MOUSE
θ value	1.63604e-09 (rank : 117)	NC score	0.875913 (rank : 105)
Query Neighborhood Hits	434	Target Neighborhood Hits	338	Shared Neighborhood Hits	313
SwissProt Accessions	P31245, Q149U3, Q920T8	Gene names	Hoxa2, Hox-1.11, Hoxa-2
Domain Architecture
Description	Homeobox protein Hox-A2 (Hox-1.11) (Hox1.11).

HXD9_HUMAN
θ value	1.63604e-09 (rank : 118)	NC score	0.837761 (rank : 171)
Query Neighborhood Hits	434	Target Neighborhood Hits	352	Shared Neighborhood Hits	315
SwissProt Accessions	P28356	Gene names	HOXD9, HOX4C
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2).

OTX1_MOUSE
θ value	1.63604e-09 (rank : 119)	NC score	0.822392 (rank : 212)
Query Neighborhood Hits	434	Target Neighborhood Hits	372	Shared Neighborhood Hits	321
SwissProt Accessions	P80205	Gene names	Otx1, Otx-1
Domain Architecture
Description	Homeobox protein OTX1.

OTX1_HUMAN
θ value	2.13673e-09 (rank : 120)	NC score	0.827170 (rank : 204)
Query Neighborhood Hits	434	Target Neighborhood Hits	379	Shared Neighborhood Hits	320
SwissProt Accessions	P32242, Q53TG6	Gene names	OTX1
Domain Architecture
Description	Homeobox protein OTX1.

PEPP1_HUMAN
θ value	2.13673e-09 (rank : 121)	NC score	0.884253 (rank : 90)
Query Neighborhood Hits	434	Target Neighborhood Hits	338	Shared Neighborhood Hits	326
SwissProt Accessions	Q8NHV9, O95030, Q3SYE0	Gene names	PEPP1, OTEX
Domain Architecture
Description	Paired-like homeobox protein PEPP-1 (Ovary-, testis- and epididymis- expressed gene protein).

PHX2A_HUMAN
θ value	2.13673e-09 (rank : 122)	NC score	0.858054 (rank : 125)
Query Neighborhood Hits	434	Target Neighborhood Hits	345	Shared Neighborhood Hits	320
SwissProt Accessions	O14813, Q8IVZ2	Gene names	PHOX2A, ARIX, PMX2A
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (Aristaless homeobox protein homolog) (ARIX1 homeodomain protein).

HXC11_HUMAN
θ value	2.79066e-09 (rank : 123)	NC score	0.855078 (rank : 134)
Query Neighborhood Hits	434	Target Neighborhood Hits	349	Shared Neighborhood Hits	317
SwissProt Accessions	O43248, Q96DH2	Gene names	HOXC11
Domain Architecture
Description	Homeobox protein Hox-C11.

HLX1_MOUSE
θ value	3.64472e-09 (rank : 124)	NC score	0.883816 (rank : 92)
Query Neighborhood Hits	434	Target Neighborhood Hits	362	Shared Neighborhood Hits	308
SwissProt Accessions	Q61670	Gene names	Hlx1, Hlx
Domain Architecture
Description	Homeobox protein HLX1.

HXA6_HUMAN
θ value	3.64472e-09 (rank : 125)	NC score	0.831010 (rank : 189)
Query Neighborhood Hits	434	Target Neighborhood Hits	309	Shared Neighborhood Hits	306
SwissProt Accessions	P31267, Q9UPM0	Gene names	HOXA6, HOX1B
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A6 (Hox-1B).

RX_HUMAN
θ value	3.64472e-09 (rank : 126)	NC score	0.861393 (rank : 117)
Query Neighborhood Hits	434	Target Neighborhood Hits	423	Shared Neighborhood Hits	335
SwissProt Accessions	Q9Y2V3	Gene names	RAX, RX
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

VAX1_MOUSE
θ value	3.64472e-09 (rank : 127)	NC score	0.897771 (rank : 53)
Query Neighborhood Hits	434	Target Neighborhood Hits	351	Shared Neighborhood Hits	323
SwissProt Accessions	Q2NKI2, O88880	Gene names	Vax1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

HXB8_HUMAN
θ value	4.76016e-09 (rank : 128)	NC score	0.832811 (rank : 186)
Query Neighborhood Hits	434	Target Neighborhood Hits	324	Shared Neighborhood Hits	317
SwissProt Accessions	P17481, Q9H1I2	Gene names	HOXB8, HOX2D
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4).

HXB8_MOUSE
θ value	4.76016e-09 (rank : 129)	NC score	0.832890 (rank : 185)
Query Neighborhood Hits	434	Target Neighborhood Hits	325	Shared Neighborhood Hits	318
SwissProt Accessions	P09632	Gene names	Hoxb8, Hox-2.4, Hoxb-8
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2.4).

HXD4_HUMAN
θ value	4.76016e-09 (rank : 130)	NC score	0.847487 (rank : 151)
Query Neighborhood Hits	434	Target Neighborhood Hits	337	Shared Neighborhood Hits	306
SwissProt Accessions	P09016, Q96AU0	Gene names	HOXD4, HOX4B
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4B) (Hox-5.1) (HHO.C13).

IPF1_HUMAN
θ value	4.76016e-09 (rank : 131)	NC score	0.881279 (rank : 96)
Query Neighborhood Hits	434	Target Neighborhood Hits	330	Shared Neighborhood Hits	313
SwissProt Accessions	P52945, O60594	Gene names	IPF1, PDX1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Pancreas/duodenum homeobox 1) (PDX- 1) (Islet/duodenum homeobox-1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Insulin upstream factor 1) (IUF-1) (Glucose- sensitive factor) (GSF).

IPF1_MOUSE
θ value	4.76016e-09 (rank : 132)	NC score	0.880792 (rank : 97)
Query Neighborhood Hits	434	Target Neighborhood Hits	340	Shared Neighborhood Hits	314
SwissProt Accessions	P52946	Gene names	Ipf1, Pdx1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Islet/duodenum homeobox 1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Pancreas/duodenum homeobox 1).

MEOX2_HUMAN
θ value	4.76016e-09 (rank : 133)	NC score	0.888151 (rank : 78)
Query Neighborhood Hits	434	Target Neighborhood Hits	340	Shared Neighborhood Hits	317
SwissProt Accessions	P50222, O75263, Q9UPL6	Gene names	MEOX2, GAX, MOX2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth arrest-specific homeobox).

HXD12_HUMAN
θ value	6.21693e-09 (rank : 134)	NC score	0.865338 (rank : 114)
Query Neighborhood Hits	434	Target Neighborhood Hits	334	Shared Neighborhood Hits	317
SwissProt Accessions	P35452, Q9NS03	Gene names	HOXD12, HOX4H
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4H).

HMX2_MOUSE
θ value	8.11959e-09 (rank : 135)	NC score	0.908293 (rank : 39)
Query Neighborhood Hits	434	Target Neighborhood Hits	354	Shared Neighborhood Hits	328
SwissProt Accessions	P43687, Q8R1Q2	Gene names	Hmx2, Nkx-5.2, Nkx5-2
Domain Architecture
Description	Homeobox protein HMX2 (Homeobox protein Nkx-5.2).

HXA7_MOUSE
θ value	8.11959e-09 (rank : 136)	NC score	0.844262 (rank : 155)
Query Neighborhood Hits	434	Target Neighborhood Hits	318	Shared Neighborhood Hits	308
SwissProt Accessions	P02830, Q544P0	Gene names	Hoxa7, Hox-1.1, Hoxa-7
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1.1) (M6-12) (M6).

HXC8_HUMAN
θ value	8.11959e-09 (rank : 137)	NC score	0.830906 (rank : 191)
Query Neighborhood Hits	434	Target Neighborhood Hits	327	Shared Neighborhood Hits	313
SwissProt Accessions	P31273, O15221, O15362	Gene names	HOXC8, HOX3A
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3A).

HXC8_MOUSE
θ value	8.11959e-09 (rank : 138)	NC score	0.830983 (rank : 190)
Query Neighborhood Hits	434	Target Neighborhood Hits	327	Shared Neighborhood Hits	313
SwissProt Accessions	P09025	Gene names	Hoxc8, Hox-3.1, Hoxc-8
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3.1) (M31).

HXD9_MOUSE
θ value	8.11959e-09 (rank : 139)	NC score	0.833204 (rank : 182)
Query Neighborhood Hits	434	Target Neighborhood Hits	359	Shared Neighborhood Hits	314
SwissProt Accessions	P28357, Q3UYS2	Gene names	Hoxd9, Hox-4.4, Hoxd-9
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4.4) (Hox-5.2).

ESX1L_HUMAN
θ value	1.06045e-08 (rank : 140)	NC score	0.864426 (rank : 116)
Query Neighborhood Hits	434	Target Neighborhood Hits	498	Shared Neighborhood Hits	327
SwissProt Accessions	Q8N693, Q7Z6K7	Gene names	ESX1L, ESX1R
Domain Architecture
Description	Extraembryonic, spermatogenesis, homeobox 1-like protein.

GSH2_HUMAN
θ value	1.06045e-08 (rank : 141)	NC score	0.880320 (rank : 98)
Query Neighborhood Hits	434	Target Neighborhood Hits	324	Shared Neighborhood Hits	313
SwissProt Accessions	Q9BZM3	Gene names	GSH2
Domain Architecture
Description	Homeobox protein GSH-2.

PITX3_MOUSE
θ value	1.06045e-08 (rank : 142)	NC score	0.857703 (rank : 126)
Query Neighborhood Hits	434	Target Neighborhood Hits	380	Shared Neighborhood Hits	337
SwissProt Accessions	O35160	Gene names	Pitx3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

HHEX_HUMAN
θ value	1.38499e-08 (rank : 143)	NC score	0.891470 (rank : 62)
Query Neighborhood Hits	434	Target Neighborhood Hits	358	Shared Neighborhood Hits	313
SwissProt Accessions	Q03014	Gene names	HHEX, HEX, PRH, PRHX
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

HXA6_MOUSE
θ value	1.38499e-08 (rank : 144)	NC score	0.829837 (rank : 194)
Query Neighborhood Hits	434	Target Neighborhood Hits	304	Shared Neighborhood Hits	302
SwissProt Accessions	P09092, Q9JI98	Gene names	Hoxa6, Hox-1.2, Hoxa-6
Domain Architecture
Description	Homeobox protein Hox-A6 (Hox-1.2) (M5-4).

HXC4_MOUSE
θ value	1.38499e-08 (rank : 145)	NC score	0.854372 (rank : 135)
Query Neighborhood Hits	434	Target Neighborhood Hits	365	Shared Neighborhood Hits	321
SwissProt Accessions	Q08624	Gene names	Hoxc4, Hox-3.5, Hoxc-4
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3.5).

CRX_MOUSE
θ value	2.36244e-08 (rank : 146)	NC score	0.825233 (rank : 209)
Query Neighborhood Hits	434	Target Neighborhood Hits	359	Shared Neighborhood Hits	323
SwissProt Accessions	O54751	Gene names	Crx
Domain Architecture
Description	Cone-rod homeobox protein.

HXC4_HUMAN
θ value	2.36244e-08 (rank : 147)	NC score	0.848399 (rank : 146)
Query Neighborhood Hits	434	Target Neighborhood Hits	361	Shared Neighborhood Hits	321
SwissProt Accessions	P09017	Gene names	HOXC4, HOX3E
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3E) (CP19).

HXD10_MOUSE
θ value	2.36244e-08 (rank : 148)	NC score	0.828290 (rank : 201)
Query Neighborhood Hits	434	Target Neighborhood Hits	392	Shared Neighborhood Hits	319
SwissProt Accessions	P28359, Q91WU9	Gene names	Hoxd10, Hox-4.5, Hoxd-10
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4.5) (Hox-5.3).

HXD11_HUMAN
θ value	2.36244e-08 (rank : 149)	NC score	0.858903 (rank : 122)
Query Neighborhood Hits	434	Target Neighborhood Hits	353	Shared Neighborhood Hits	322
SwissProt Accessions	P31277, Q9NS02	Gene names	HOXD11, HOX4F
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4F).

HXA9_HUMAN
θ value	3.08544e-08 (rank : 150)	NC score	0.838750 (rank : 166)
Query Neighborhood Hits	434	Target Neighborhood Hits	332	Shared Neighborhood Hits	314
SwissProt Accessions	P31269, O43369, O43429, Q99820	Gene names	HOXA9, HOX1G
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1G).

HXA9_MOUSE
θ value	3.08544e-08 (rank : 151)	NC score	0.839627 (rank : 164)
Query Neighborhood Hits	434	Target Neighborhood Hits	334	Shared Neighborhood Hits	314
SwissProt Accessions	P09631, O70154, O70155	Gene names	Hoxa9, Hox-1.7, Hoxa-9
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1.7).

HXD10_HUMAN
θ value	3.08544e-08 (rank : 152)	NC score	0.828929 (rank : 197)
Query Neighborhood Hits	434	Target Neighborhood Hits	392	Shared Neighborhood Hits	319
SwissProt Accessions	P28358	Gene names	HOXD10, HOX4D
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4D) (Hox-4E).

HXD4_MOUSE
θ value	3.08544e-08 (rank : 153)	NC score	0.843892 (rank : 157)
Query Neighborhood Hits	434	Target Neighborhood Hits	339	Shared Neighborhood Hits	306
SwissProt Accessions	P10628, P97451, Q3UXL6	Gene names	Hoxd4, Hox-4.2, Hoxd-4
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4.2) (Hox-5.1).

PHX2B_HUMAN
θ value	3.08544e-08 (rank : 154)	NC score	0.842394 (rank : 159)
Query Neighborhood Hits	434	Target Neighborhood Hits	407	Shared Neighborhood Hits	323
SwissProt Accessions	Q99453, Q6PJD9	Gene names	PHOX2B, PMX2B
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

PHX2B_MOUSE
θ value	3.08544e-08 (rank : 155)	NC score	0.842394 (rank : 160)
Query Neighborhood Hits	434	Target Neighborhood Hits	407	Shared Neighborhood Hits	323
SwissProt Accessions	O35690	Gene names	Phox2b, Pmx2b
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

PRRXL_MOUSE
θ value	3.08544e-08 (rank : 156)	NC score	0.850260 (rank : 140)
Query Neighborhood Hits	434	Target Neighborhood Hits	350	Shared Neighborhood Hits	334
SwissProt Accessions	Q8BYH0, Q8K3F8	Gene names	Prrxl1, Drg11
Domain Architecture	No domain graphic available
Description	Paired-related homeobox protein-like 1 (Dorsal root ganglion 11) (Homeobox protein DRG11).

CRX_HUMAN
θ value	4.0297e-08 (rank : 157)	NC score	0.826176 (rank : 207)
Query Neighborhood Hits	434	Target Neighborhood Hits	360	Shared Neighborhood Hits	325
SwissProt Accessions	O43186	Gene names	CRX, CORD2
Domain Architecture
Description	Cone-rod homeobox protein.

HXD8_HUMAN
θ value	4.0297e-08 (rank : 158)	NC score	0.828806 (rank : 199)
Query Neighborhood Hits	434	Target Neighborhood Hits	338	Shared Neighborhood Hits	318
SwissProt Accessions	P13378	Gene names	HOXD8, HOX4E
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4).

HXD8_MOUSE
θ value	4.0297e-08 (rank : 159)	NC score	0.828928 (rank : 198)
Query Neighborhood Hits	434	Target Neighborhood Hits	333	Shared Neighborhood Hits	316
SwissProt Accessions	P23463	Gene names	Hoxd8, Hox-4.3, Hoxd-8
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4).

OTP_MOUSE
θ value	4.0297e-08 (rank : 160)	NC score	0.858938 (rank : 121)
Query Neighborhood Hits	434	Target Neighborhood Hits	387	Shared Neighborhood Hits	331
SwissProt Accessions	O09113	Gene names	Otp
Domain Architecture
Description	Homeobox protein orthopedia.

PITX3_HUMAN
θ value	4.0297e-08 (rank : 161)	NC score	0.857128 (rank : 130)
Query Neighborhood Hits	434	Target Neighborhood Hits	366	Shared Neighborhood Hits	336
SwissProt Accessions	O75364	Gene names	PITX3, PTX3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

PRRX1_HUMAN
θ value	4.0297e-08 (rank : 162)	NC score	0.831769 (rank : 187)
Query Neighborhood Hits	434	Target Neighborhood Hits	347	Shared Neighborhood Hits	331
SwissProt Accessions	P54821, O60807	Gene names	PRRX1, PMX1
Domain Architecture
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein PHOX1).

PRRX1_MOUSE
θ value	4.0297e-08 (rank : 163)	NC score	0.831713 (rank : 188)
Query Neighborhood Hits	434	Target Neighborhood Hits	346	Shared Neighborhood Hits	329
SwissProt Accessions	P63013, P43271, Q02810	Gene names	Prrx1, Pmx, Pmx1
Domain Architecture	No domain graphic available
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein mHox) (Homeobox protein K-2).

CART1_HUMAN
θ value	5.26297e-08 (rank : 164)	NC score	0.832987 (rank : 183)
Query Neighborhood Hits	434	Target Neighborhood Hits	348	Shared Neighborhood Hits	330
SwissProt Accessions	Q15699, Q546C8, Q96FH4	Gene names	CART1
Domain Architecture
Description	Cartilage homeoprotein 1 (CART-1).

CART1_MOUSE
θ value	5.26297e-08 (rank : 165)	NC score	0.832979 (rank : 184)
Query Neighborhood Hits	434	Target Neighborhood Hits	344	Shared Neighborhood Hits	329
SwissProt Accessions	Q8C8B0, Q8C370	Gene names	Cart1
Domain Architecture	No domain graphic available
Description	Cartilage homeoprotein 1 (CART-1).

HXD11_MOUSE
θ value	5.26297e-08 (rank : 166)	NC score	0.856722 (rank : 131)
Query Neighborhood Hits	434	Target Neighborhood Hits	376	Shared Neighborhood Hits	322
SwissProt Accessions	P23813	Gene names	Hoxd11, Hox-4.6, Hoxd-11
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5).

PRRX2_HUMAN
θ value	5.26297e-08 (rank : 167)	NC score	0.842730 (rank : 158)
Query Neighborhood Hits	434	Target Neighborhood Hits	348	Shared Neighborhood Hits	328
SwissProt Accessions	Q99811, Q9UIB3	Gene names	PRRX2, PMX2, PRX2
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Paired-related homeobox protein 2).

PRRX2_MOUSE
θ value	5.26297e-08 (rank : 168)	NC score	0.837910 (rank : 168)
Query Neighborhood Hits	434	Target Neighborhood Hits	351	Shared Neighborhood Hits	330
SwissProt Accessions	Q06348, Q61651	Gene names	Prrx2, Prx2, S8
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Homeobox protein S8).

VSX1_MOUSE
θ value	5.26297e-08 (rank : 169)	NC score	0.817215 (rank : 215)
Query Neighborhood Hits	434	Target Neighborhood Hits	356	Shared Neighborhood Hits	311
SwissProt Accessions	Q91V10	Gene names	Vsx1, Rinx
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

HXA5_MOUSE
θ value	6.87365e-08 (rank : 170)	NC score	0.838672 (rank : 167)
Query Neighborhood Hits	434	Target Neighborhood Hits	338	Shared Neighborhood Hits	310
SwissProt Accessions	P09021, Q91VQ5	Gene names	Hoxa5, Hox-1.3, Hoxa-5
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1.3) (M2).

HXC12_HUMAN
θ value	6.87365e-08 (rank : 171)	NC score	0.849632 (rank : 141)
Query Neighborhood Hits	434	Target Neighborhood Hits	313	Shared Neighborhood Hits	307
SwissProt Accessions	P31275, Q9BXJ6	Gene names	HOXC12, HOX3F
Domain Architecture
Description	Homeobox protein Hox-C12 (Hox-3F).

HXC6_HUMAN
θ value	6.87365e-08 (rank : 172)	NC score	0.837777 (rank : 169)
Query Neighborhood Hits	434	Target Neighborhood Hits	306	Shared Neighborhood Hits	304
SwissProt Accessions	P09630	Gene names	HOXC6, HOX3C
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3C) (HHO.C8) (CP25).

HXC6_MOUSE
θ value	6.87365e-08 (rank : 173)	NC score	0.837777 (rank : 170)
Query Neighborhood Hits	434	Target Neighborhood Hits	306	Shared Neighborhood Hits	304
SwissProt Accessions	P10629, Q61683	Gene names	Hoxc6, Hox-3.3, Hoxc-6
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3.3) (Hox-6.1).

HXD1_MOUSE
θ value	6.87365e-08 (rank : 174)	NC score	0.868292 (rank : 111)
Query Neighborhood Hits	434	Target Neighborhood Hits	381	Shared Neighborhood Hits	327
SwissProt Accessions	Q01822	Gene names	Hoxd1, Hox-4.9, Hoxd-1
Domain Architecture
Description	Homeobox protein Hox-D1 (Hox-4.9).

GSH2_MOUSE
θ value	8.97725e-08 (rank : 175)	NC score	0.879037 (rank : 101)
Query Neighborhood Hits	434	Target Neighborhood Hits	319	Shared Neighborhood Hits	312
SwissProt Accessions	P31316	Gene names	Gsh2, Gsh-2
Domain Architecture
Description	Homeobox protein GSH-2.

GSHI_HUMAN
θ value	8.97725e-08 (rank : 176)	NC score	0.878379 (rank : 102)
Query Neighborhood Hits	434	Target Neighborhood Hits	314	Shared Neighborhood Hits	312
SwissProt Accessions	Q9H4S2	Gene names	GSH1
Domain Architecture
Description	Homeobox protein GSH-1.

HXB7_MOUSE
θ value	8.97725e-08 (rank : 177)	NC score	0.840473 (rank : 162)
Query Neighborhood Hits	434	Target Neighborhood Hits	314	Shared Neighborhood Hits	308
SwissProt Accessions	P09024, Q3UW15	Gene names	Hoxb7, Hox-2.3, Hoxb-7
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2.3) (MUB1) (Homeobox protein MH-22B).

HXC13_HUMAN
θ value	8.97725e-08 (rank : 178)	NC score	0.820728 (rank : 213)
Query Neighborhood Hits	434	Target Neighborhood Hits	336	Shared Neighborhood Hits	323
SwissProt Accessions	P31276, Q96J32, Q9NR24, Q9NYD5	Gene names	HOXC13, HOX3G
Domain Architecture
Description	Homeobox protein Hox-C13 (Hox-3G).

HXC13_MOUSE
θ value	8.97725e-08 (rank : 179)	NC score	0.820601 (rank : 214)
Query Neighborhood Hits	434	Target Neighborhood Hits	337	Shared Neighborhood Hits	323
SwissProt Accessions	P50207, Q53Z78, Q920I7	Gene names	Hoxc13, Hoxc-13
Domain Architecture
Description	Homeobox protein Hox-C13.

GSHI_MOUSE
θ value	1.17247e-07 (rank : 180)	NC score	0.878304 (rank : 103)
Query Neighborhood Hits	434	Target Neighborhood Hits	313	Shared Neighborhood Hits	310
SwissProt Accessions	P31315	Gene names	Gsh1, Gsh-1
Domain Architecture
Description	Homeobox protein GSH-1.

HXC10_HUMAN
θ value	1.17247e-07 (rank : 181)	NC score	0.827252 (rank : 203)
Query Neighborhood Hits	434	Target Neighborhood Hits	417	Shared Neighborhood Hits	314
SwissProt Accessions	Q9NYD6, O15219, O15220, Q9BVD5	Gene names	HOXC10
Domain Architecture
Description	Homeobox protein Hox-C10.

HXC10_MOUSE
θ value	1.17247e-07 (rank : 182)	NC score	0.826537 (rank : 205)
Query Neighborhood Hits	434	Target Neighborhood Hits	417	Shared Neighborhood Hits	313
SwissProt Accessions	P31257, P31312, Q7TMT7	Gene names	Hoxc10, Hox-3.6, Hoxc-10
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C10 (Hox-3.6).

PITX1_HUMAN
θ value	1.17247e-07 (rank : 183)	NC score	0.847370 (rank : 152)
Query Neighborhood Hits	434	Target Neighborhood Hits	353	Shared Neighborhood Hits	334
SwissProt Accessions	P78337, O14677, O60425, Q9BTI5	Gene names	PITX1, BFT, PTX1
Domain Architecture
Description	Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot).

PITX1_MOUSE
θ value	1.17247e-07 (rank : 184)	NC score	0.848140 (rank : 149)
Query Neighborhood Hits	434	Target Neighborhood Hits	362	Shared Neighborhood Hits	339
SwissProt Accessions	P70314, O54742, P70427	Gene names	Pitx1, Bft, Potx, Ptx1
Domain Architecture
Description	Pituitary homeobox 1 (Homeobox protein P-OTX) (Pituitary OTX-related factor) (Hindlimb expressed homeobox protein backfoot) (Ptx1).

RX_MOUSE
θ value	1.17247e-07 (rank : 185)	NC score	0.858650 (rank : 123)
Query Neighborhood Hits	434	Target Neighborhood Hits	429	Shared Neighborhood Hits	334
SwissProt Accessions	O35602, O08748	Gene names	Rax, Rx
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

HXB9_HUMAN
θ value	1.53129e-07 (rank : 186)	NC score	0.825356 (rank : 208)
Query Neighborhood Hits	434	Target Neighborhood Hits	344	Shared Neighborhood Hits	316
SwissProt Accessions	P17482, Q9H1I1	Gene names	HOXB9, HOX2E
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5).

HXB9_MOUSE
θ value	1.53129e-07 (rank : 187)	NC score	0.824977 (rank : 210)
Query Neighborhood Hits	434	Target Neighborhood Hits	344	Shared Neighborhood Hits	313
SwissProt Accessions	P20615	Gene names	Hoxb9, Hox-2.5, Hoxb-9
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2.5).

HXD12_MOUSE
θ value	1.53129e-07 (rank : 188)	NC score	0.857433 (rank : 127)
Query Neighborhood Hits	434	Target Neighborhood Hits	370	Shared Neighborhood Hits	320
SwissProt Accessions	P23812	Gene names	Hoxd12, Hox-4.7, Hoxd-12
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4.7) (Hox-5.6).

PITX2_HUMAN
θ value	1.53129e-07 (rank : 189)	NC score	0.849040 (rank : 143)
Query Neighborhood Hits	434	Target Neighborhood Hits	381	Shared Neighborhood Hits	339
SwissProt Accessions	Q99697, O60578, O60579, O60580, Q9BY17	Gene names	PITX2, ARP1, RGS, RIEG, RIEG1
Domain Architecture
Description	Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription factor) (Solurshin) (ALL1-responsive protein ARP1).

HXA10_HUMAN
θ value	1.99992e-07 (rank : 190)	NC score	0.828740 (rank : 200)
Query Neighborhood Hits	434	Target Neighborhood Hits	334	Shared Neighborhood Hits	304
SwissProt Accessions	P31260, O43370, O43605, Q15949	Gene names	HOXA10, HOX1H
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL).

HXA10_MOUSE
θ value	1.99992e-07 (rank : 191)	NC score	0.827301 (rank : 202)
Query Neighborhood Hits	434	Target Neighborhood Hits	365	Shared Neighborhood Hits	307
SwissProt Accessions	P31310, Q80Y22	Gene names	Hoxa10, Hox-1.8, Hoxa-10
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1.8).

HXB7_HUMAN
θ value	1.99992e-07 (rank : 192)	NC score	0.840803 (rank : 161)
Query Neighborhood Hits	434	Target Neighborhood Hits	311	Shared Neighborhood Hits	308
SwissProt Accessions	P09629, Q15957	Gene names	HOXB7, HOX2C
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2C) (HHO.C1).

HXA5_HUMAN
θ value	2.61198e-07 (rank : 193)	NC score	0.837353 (rank : 173)
Query Neighborhood Hits	434	Target Neighborhood Hits	336	Shared Neighborhood Hits	309
SwissProt Accessions	P20719, O43367, Q96CY6	Gene names	HOXA5, HOX1C
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1C).

HXA7_HUMAN
θ value	2.61198e-07 (rank : 194)	NC score	0.839947 (rank : 163)
Query Neighborhood Hits	434	Target Neighborhood Hits	309	Shared Neighborhood Hits	307
SwissProt Accessions	P31268, O43368, O43486, O95655, Q9NSC8, Q9UDM1	Gene names	HOXA7, HOX1A
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1).

HXC12_MOUSE
θ value	2.61198e-07 (rank : 195)	NC score	0.845562 (rank : 154)
Query Neighborhood Hits	434	Target Neighborhood Hits	316	Shared Neighborhood Hits	307
SwissProt Accessions	Q8K5B8	Gene names	Hoxc12, Hox-3.8, Hoxc-12
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C12 (Hox-3.8).

HXD1_HUMAN
θ value	2.61198e-07 (rank : 196)	NC score	0.868075 (rank : 112)
Query Neighborhood Hits	434	Target Neighborhood Hits	337	Shared Neighborhood Hits	318
SwissProt Accessions	Q9GZZ0	Gene names	HOXD1
Domain Architecture
Description	Homeobox protein Hox-D1.

OTX2_MOUSE
θ value	2.61198e-07 (rank : 197)	NC score	0.800739 (rank : 223)
Query Neighborhood Hits	434	Target Neighborhood Hits	345	Shared Neighborhood Hits	322
SwissProt Accessions	P80206	Gene names	Otx2, Otx-2
Domain Architecture
Description	Homeobox protein OTX2.

PAX6_HUMAN
θ value	2.61198e-07 (rank : 198)	NC score	0.723481 (rank : 235)
Query Neighborhood Hits	434	Target Neighborhood Hits	383	Shared Neighborhood Hits	328
SwissProt Accessions	P26367, Q6N006, Q99413	Gene names	PAX6, AN2
Domain Architecture
Description	Paired box protein Pax-6 (Oculorhombin) (Aniridia type II protein).

PAX6_MOUSE
θ value	2.61198e-07 (rank : 199)	NC score	0.723481 (rank : 236)
Query Neighborhood Hits	434	Target Neighborhood Hits	383	Shared Neighborhood Hits	328
SwissProt Accessions	P63015, P32117, P70601, Q62222, Q64037, Q8CEI5, Q8VDB5, Q921Q8	Gene names	Pax6, Pax-6, Sey
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-6 (Oculorhombin).

PITX2_MOUSE
θ value	2.61198e-07 (rank : 200)	NC score	0.848771 (rank : 145)
Query Neighborhood Hits	434	Target Neighborhood Hits	383	Shared Neighborhood Hits	338
SwissProt Accessions	P97474, O08646, O70336, P97933, Q9JLA0, Q9QXB8, Q9R1V9, Q9Z141	Gene names	Pitx2, Arp1, Brx1, Otlx2, Ptx2, Rgs
Domain Architecture
Description	Pituitary homeobox 2 (Orthodenticle-like homeobox 2) (Solurshin) (ALL1-responsive protein ARP1) (BRX1 homeoprotein) (Paired-like homeodomain transcription factor Munc 30).

DUX3_HUMAN
θ value	3.41135e-07 (rank : 201)	NC score	0.793618 (rank : 227)
Query Neighborhood Hits	434	Target Neighborhood Hits	312	Shared Neighborhood Hits	307
SwissProt Accessions	Q96PT4, Q9UND2	Gene names	DUX3
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 3.

GSC_MOUSE
θ value	3.41135e-07 (rank : 202)	NC score	0.848873 (rank : 144)
Query Neighborhood Hits	434	Target Neighborhood Hits	368	Shared Neighborhood Hits	334
SwissProt Accessions	Q02591	Gene names	Gsc
Domain Architecture
Description	Homeobox protein goosecoid.

HXB5_HUMAN
θ value	3.41135e-07 (rank : 203)	NC score	0.835279 (rank : 180)
Query Neighborhood Hits	434	Target Neighborhood Hits	332	Shared Neighborhood Hits	307
SwissProt Accessions	P09067, P09069	Gene names	HOXB5, HOX2A
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2A) (HHO.C10) (HU-1).

HXB5_MOUSE
θ value	3.41135e-07 (rank : 204)	NC score	0.834516 (rank : 181)
Query Neighborhood Hits	434	Target Neighborhood Hits	337	Shared Neighborhood Hits	307
SwissProt Accessions	P09079, Q3ZAY8	Gene names	Hoxb5, Hox-2.1, Hoxb-5
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2.1) (MU-1) (H24.1).

HXB6_HUMAN
θ value	3.41135e-07 (rank : 205)	NC score	0.830396 (rank : 193)
Query Neighborhood Hits	434	Target Neighborhood Hits	307	Shared Neighborhood Hits	302
SwissProt Accessions	P17509, P09068, Q9HB11, Q9UGH2	Gene names	HOXB6, HOX2B
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2).

HXB6_MOUSE
θ value	3.41135e-07 (rank : 206)	NC score	0.830702 (rank : 192)
Query Neighborhood Hits	434	Target Neighborhood Hits	309	Shared Neighborhood Hits	302
SwissProt Accessions	P09023	Gene names	Hoxb6, Hox-2.2, Hoxb-6
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2.2) (Homeobox protein MH-22A).

OTX2_HUMAN
θ value	3.41135e-07 (rank : 207)	NC score	0.800151 (rank : 224)
Query Neighborhood Hits	434	Target Neighborhood Hits	341	Shared Neighborhood Hits	319
SwissProt Accessions	P32243, Q6GTV3, Q9HAW3, Q9P2R1	Gene names	OTX2
Domain Architecture
Description	Homeobox protein OTX2.

HXB4_HUMAN
θ value	4.45536e-07 (rank : 208)	NC score	0.847766 (rank : 150)
Query Neighborhood Hits	434	Target Neighborhood Hits	376	Shared Neighborhood Hits	324
SwissProt Accessions	P17483, Q9NTA0	Gene names	HOXB4, HOX2F
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2F) (Hox-2.6).

HXB4_MOUSE
θ value	4.45536e-07 (rank : 209)	NC score	0.843963 (rank : 156)
Query Neighborhood Hits	434	Target Neighborhood Hits	375	Shared Neighborhood Hits	320
SwissProt Accessions	P10284, Q3UZB4, Q4VBG0	Gene names	Hoxb4, Hox-2.6, Hoxb-4
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2.6).

GSC_HUMAN
θ value	5.81887e-07 (rank : 210)	NC score	0.849421 (rank : 142)
Query Neighborhood Hits	434	Target Neighborhood Hits	369	Shared Neighborhood Hits	337
SwissProt Accessions	P56915, Q86YR1	Gene names	GSC
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid.

HXC5_HUMAN
θ value	7.59969e-07 (rank : 211)	NC score	0.836462 (rank : 177)
Query Neighborhood Hits	434	Target Neighborhood Hits	316	Shared Neighborhood Hits	302
SwissProt Accessions	Q00444	Gene names	HOXC5, HOX3D
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3D) (CP11).

HXC5_MOUSE
θ value	7.59969e-07 (rank : 212)	NC score	0.836012 (rank : 178)
Query Neighborhood Hits	434	Target Neighborhood Hits	316	Shared Neighborhood Hits	302
SwissProt Accessions	P32043, Q8BJW4	Gene names	Hoxc5, Hox-3.4, Hoxc-5
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3.4) (Hox-6.2).

HXA13_MOUSE
θ value	9.92553e-07 (rank : 213)	NC score	0.826505 (rank : 206)
Query Neighborhood Hits	434	Target Neighborhood Hits	351	Shared Neighborhood Hits	322
SwissProt Accessions	Q62424	Gene names	Hoxa13, Hox-1.10
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1.10).

DUX1_HUMAN
θ value	1.29631e-06 (rank : 214)	NC score	0.798449 (rank : 225)
Query Neighborhood Hits	434	Target Neighborhood Hits	330	Shared Neighborhood Hits	321
SwissProt Accessions	O43812	Gene names	DUX1
Domain Architecture	No domain graphic available
Description	Double homeobox protein 1.

DUX5_HUMAN
θ value	1.29631e-06 (rank : 215)	NC score	0.793988 (rank : 226)
Query Neighborhood Hits	434	Target Neighborhood Hits	330	Shared Neighborhood Hits	321
SwissProt Accessions	Q96PT3	Gene names	DUX5
Domain Architecture	No domain graphic available
Description	Double homeobox protein 5.

PAX7_HUMAN
θ value	1.29631e-06 (rank : 216)	NC score	0.737983 (rank : 233)
Query Neighborhood Hits	434	Target Neighborhood Hits	456	Shared Neighborhood Hits	350
SwissProt Accessions	P23759	Gene names	PAX7, HUP1
Domain Architecture
Description	Paired box protein Pax-7 (HUP1).

CHX10_HUMAN
θ value	1.69304e-06 (rank : 217)	NC score	0.813696 (rank : 218)
Query Neighborhood Hits	434	Target Neighborhood Hits	340	Shared Neighborhood Hits	315
SwissProt Accessions	P58304	Gene names	CHX10, VSX2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

CHX10_MOUSE
θ value	1.69304e-06 (rank : 218)	NC score	0.814036 (rank : 217)
Query Neighborhood Hits	434	Target Neighborhood Hits	340	Shared Neighborhood Hits	315
SwissProt Accessions	Q61412	Gene names	Chx10, Vsx2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

HXB13_HUMAN
θ value	1.69304e-06 (rank : 219)	NC score	0.811652 (rank : 219)
Query Neighborhood Hits	434	Target Neighborhood Hits	377	Shared Neighborhood Hits	327
SwissProt Accessions	Q92826, Q96QM4, Q99810	Gene names	HOXB13
Domain Architecture
Description	Homeobox protein Hox-B13.

PAX7_MOUSE
θ value	2.21117e-06 (rank : 220)	NC score	0.736624 (rank : 234)
Query Neighborhood Hits	434	Target Neighborhood Hits	422	Shared Neighborhood Hits	344
SwissProt Accessions	P47239, Q9ES16	Gene names	Pax7, Pax-7
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-7.

SHOX2_HUMAN
θ value	2.21117e-06 (rank : 221)	NC score	0.837043 (rank : 176)
Query Neighborhood Hits	434	Target Neighborhood Hits	353	Shared Neighborhood Hits	318
SwissProt Accessions	O60902, O60465, O60467, O60903	Gene names	SHOX2, OG12X, SHOT
Domain Architecture
Description	Short stature homeobox protein 2 (Paired-related homeobox protein SHOT) (Homeobox protein Og12X).

SHOX2_MOUSE
θ value	2.21117e-06 (rank : 222)	NC score	0.837357 (rank : 172)
Query Neighborhood Hits	434	Target Neighborhood Hits	348	Shared Neighborhood Hits	318
SwissProt Accessions	P70390, P70369	Gene names	Shox2, Og12x, Prx3
Domain Architecture
Description	Short stature homeobox protein 2 (Homeobox protein Og12X) (OG-12) (Paired family homeodomain protein Prx3).

SHOX_HUMAN
θ value	2.21117e-06 (rank : 223)	NC score	0.837262 (rank : 174)
Query Neighborhood Hits	434	Target Neighborhood Hits	363	Shared Neighborhood Hits	320
SwissProt Accessions	O15266, O00412, O00413, O15267	Gene names	SHOX, PHOG
Domain Architecture
Description	Short stature homeobox protein (Short stature homeobox-containing protein) (Pseudoautosomal homeobox-containing osteogenic protein).

HESX1_MOUSE
θ value	2.88788e-06 (rank : 224)	NC score	0.860288 (rank : 118)
Query Neighborhood Hits	434	Target Neighborhood Hits	331	Shared Neighborhood Hits	312
SwissProt Accessions	Q61658, Q61047	Gene names	Hesx1, Hes-1, Rpx
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (Anterior- restricted homeobox protein) (Rathke pouch homeo box).

HXA13_HUMAN
θ value	2.88788e-06 (rank : 225)	NC score	0.824568 (rank : 211)
Query Neighborhood Hits	434	Target Neighborhood Hits	353	Shared Neighborhood Hits	322
SwissProt Accessions	P31271, O43371	Gene names	HOXA13, HOX1J
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1J).

HXB13_MOUSE
θ value	2.88788e-06 (rank : 226)	NC score	0.814137 (rank : 216)
Query Neighborhood Hits	434	Target Neighborhood Hits	384	Shared Neighborhood Hits	324
SwissProt Accessions	P70321, Q80Y12	Gene names	Hoxb13
Domain Architecture
Description	Homeobox protein Hox-B13.

LMX1B_HUMAN
θ value	2.88788e-06 (rank : 227)	NC score	0.509333 (rank : 257)
Query Neighborhood Hits	434	Target Neighborhood Hits	404	Shared Neighborhood Hits	305
SwissProt Accessions	O60663, O75463	Gene names	LMX1B
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

LMX1B_MOUSE
θ value	2.88788e-06 (rank : 228)	NC score	0.509393 (rank : 256)
Query Neighborhood Hits	434	Target Neighborhood Hits	394	Shared Neighborhood Hits	303
SwissProt Accessions	O88609	Gene names	Lmx1b
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

PO6F2_MOUSE
θ value	3.77169e-06 (rank : 229)	NC score	0.523186 (rank : 253)
Query Neighborhood Hits	434	Target Neighborhood Hits	639	Shared Neighborhood Hits	317
SwissProt Accessions	Q8BJI4	Gene names	Pou6f2
Domain Architecture	No domain graphic available
Description	POU domain, class 6, transcription factor 2.

GSCL_HUMAN
θ value	4.92598e-06 (rank : 230)	NC score	0.852825 (rank : 138)
Query Neighborhood Hits	434	Target Neighborhood Hits	343	Shared Neighborhood Hits	323
SwissProt Accessions	O15499	Gene names	GSCL
Domain Architecture
Description	Homeobox protein goosecoid-like (GSC-2).

LHX5_MOUSE
θ value	6.43352e-06 (rank : 231)	NC score	0.532534 (rank : 242)
Query Neighborhood Hits	434	Target Neighborhood Hits	456	Shared Neighborhood Hits	323
SwissProt Accessions	P61375, P50459	Gene names	Lhx5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

DUX4_HUMAN
θ value	8.40245e-06 (rank : 232)	NC score	0.766153 (rank : 228)
Query Neighborhood Hits	434	Target Neighborhood Hits	403	Shared Neighborhood Hits	327
SwissProt Accessions	Q9UBX2	Gene names	DUX4, DUX10
Domain Architecture	No domain graphic available
Description	Double homeobox protein 4 (Double homeobox protein 10) (Double homeobox protein 4/10).

GSCL_MOUSE
θ value	8.40245e-06 (rank : 233)	NC score	0.835976 (rank : 179)
Query Neighborhood Hits	434	Target Neighborhood Hits	339	Shared Neighborhood Hits	323
SwissProt Accessions	P56916	Gene names	Gscl
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid-like (GSC-2).

HESX1_HUMAN
θ value	8.40245e-06 (rank : 234)	NC score	0.856234 (rank : 132)
Query Neighborhood Hits	434	Target Neighborhood Hits	326	Shared Neighborhood Hits	314
SwissProt Accessions	Q9UBX0, Q99667	Gene names	HESX1, HANF
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (hAnf).

PAX4_MOUSE
θ value	1.09739e-05 (rank : 235)	NC score	0.741565 (rank : 229)
Query Neighborhood Hits	434	Target Neighborhood Hits	370	Shared Neighborhood Hits	331
SwissProt Accessions	P32115, P97341, Q9QUR1, Q9R091	Gene names	Pax4, Pax-4
Domain Architecture
Description	Paired box protein Pax-4.

PO6F2_HUMAN
θ value	1.09739e-05 (rank : 236)	NC score	0.521687 (rank : 254)
Query Neighborhood Hits	434	Target Neighborhood Hits	618	Shared Neighborhood Hits	312
SwissProt Accessions	P78424, P78425, Q75ME8, Q86UM6, Q9UDS7	Gene names	POU6F2, RPF1
Domain Architecture
Description	POU domain, class 6, transcription factor 2 (Retina-derived POU-domain factor 1) (RPF-1).

LHX61_HUMAN
θ value	1.43324e-05 (rank : 237)	NC score	0.531236 (rank : 244)
Query Neighborhood Hits	434	Target Neighborhood Hits	412	Shared Neighborhood Hits	305
SwissProt Accessions	Q9UPM6, Q5T7S8, Q9NTK3, Q9UPM5	Gene names	LHX6, LHX6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1 (Lhx6).

OLIG2_MOUSE
θ value	1.43324e-05 (rank : 238)	NC score	0.059902 (rank : 383)
Query Neighborhood Hits	434	Target Neighborhood Hits	74	Shared Neighborhood Hits	6
SwissProt Accessions	Q9EQW6, Q9JKN4	Gene names	Olig2
Domain Architecture
Description	Oligodendrocyte transcription factor 2 (Oligo2).

LHX5_HUMAN
θ value	1.87187e-05 (rank : 239)	NC score	0.533019 (rank : 241)
Query Neighborhood Hits	434	Target Neighborhood Hits	453	Shared Neighborhood Hits	323
SwissProt Accessions	Q9H2C1	Gene names	LHX5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

HXD13_HUMAN
θ value	2.44474e-05 (rank : 240)	NC score	0.806000 (rank : 221)
Query Neighborhood Hits	434	Target Neighborhood Hits	332	Shared Neighborhood Hits	317
SwissProt Accessions	P35453	Gene names	HOXD13, HOX4I
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4I).

HXD13_MOUSE
θ value	2.44474e-05 (rank : 241)	NC score	0.805462 (rank : 222)
Query Neighborhood Hits	434	Target Neighborhood Hits	324	Shared Neighborhood Hits	315
SwissProt Accessions	P70217, Q2VPB0, Q2VPB1, Q64177	Gene names	Hoxd13, Hox-4.8
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4.8).

VSX1_HUMAN
θ value	2.44474e-05 (rank : 242)	NC score	0.807015 (rank : 220)
Query Neighborhood Hits	434	Target Neighborhood Hits	344	Shared Neighborhood Hits	314
SwissProt Accessions	Q9NZR4, Q5TF40, Q5TF41, Q9HCU3, Q9NU27	Gene names	VSX1, RINX
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

LMX1A_HUMAN
θ value	3.19293e-05 (rank : 243)	NC score	0.529001 (rank : 247)
Query Neighborhood Hits	434	Target Neighborhood Hits	406	Shared Neighborhood Hits	308
SwissProt Accessions	Q8TE12, Q8TE11	Gene names	LMX1A
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

LMX1A_MOUSE
θ value	3.19293e-05 (rank : 244)	NC score	0.527726 (rank : 248)
Query Neighborhood Hits	434	Target Neighborhood Hits	405	Shared Neighborhood Hits	307
SwissProt Accessions	Q9JKU8	Gene names	Lmx1a
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

OLIG2_HUMAN
θ value	4.1701e-05 (rank : 245)	NC score	0.057341 (rank : 384)
Query Neighborhood Hits	434	Target Neighborhood Hits	84	Shared Neighborhood Hits	6
SwissProt Accessions	Q13516, Q86X04, Q9NZ14	Gene names	OLIG2, BHLHB1, PRKCBP2, RACK17
Domain Architecture
Description	Oligodendrocyte transcription factor 2 (Oligo2) (Basic helix-loop- helix protein class B 1) (Protein kinase C-binding protein RACK17) (Protein kinase C-binding protein 2).

PAX4_HUMAN
θ value	5.44631e-05 (rank : 246)	NC score	0.740981 (rank : 230)
Query Neighborhood Hits	434	Target Neighborhood Hits	367	Shared Neighborhood Hits	333
SwissProt Accessions	O43316, O95161, Q6B0H0	Gene names	PAX4
Domain Architecture
Description	Paired box protein Pax-4.

RERE_HUMAN
θ value	5.44631e-05 (rank : 247)	NC score	0.055263 (rank : 385)
Query Neighborhood Hits	434	Target Neighborhood Hits	779	Shared Neighborhood Hits	57
SwissProt Accessions	Q9P2R6, O43393, O75046, O75359, Q5VXL9, Q6P6B9, Q9Y2W4	Gene names	RERE, ARG, ARP, ATN1L, KIAA0458
Domain Architecture	No domain graphic available
Description	Arginine-glutamic acid dipeptide repeats protein (Atrophin-1-like protein) (Atrophin-1-related protein).

LHX8_MOUSE
θ value	7.1131e-05 (rank : 248)	NC score	0.506149 (rank : 259)
Query Neighborhood Hits	434	Target Neighborhood Hits	406	Shared Neighborhood Hits	304
SwissProt Accessions	O35652, O70163, O88707	Gene names	Lhx8, Lhx7
Domain Architecture
Description	LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3).

LHX61_MOUSE
θ value	9.29e-05 (rank : 249)	NC score	0.498512 (rank : 260)
Query Neighborhood Hits	434	Target Neighborhood Hits	396	Shared Neighborhood Hits	288
SwissProt Accessions	Q9R1R0, Q9R1R1	Gene names	Lhx6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1.

LHX6_MOUSE
θ value	9.29e-05 (rank : 250)	NC score	0.532493 (rank : 243)
Query Neighborhood Hits	434	Target Neighborhood Hits	399	Shared Neighborhood Hits	303
SwissProt Accessions	O88706	Gene names	Lhx6
Domain Architecture
Description	LIM/homeobox protein Lhx6.

PEPP2_HUMAN
θ value	9.29e-05 (rank : 251)	NC score	0.851374 (rank : 139)
Query Neighborhood Hits	434	Target Neighborhood Hits	316	Shared Neighborhood Hits	304
SwissProt Accessions	Q9BQY4, Q9BR00	Gene names	PEPP2, THG1
Domain Architecture
Description	Paired-like homeobox protein PEPP-2 (Testis homeobox gene 1).

ZFHX2_HUMAN
θ value	0.000121331 (rank : 252)	NC score	0.577641 (rank : 237)
Query Neighborhood Hits	434	Target Neighborhood Hits	1178	Shared Neighborhood Hits	338
SwissProt Accessions	Q9C0A1	Gene names	ZFHX2, KIAA1762
Domain Architecture
Description	Zinc finger homeobox protein 2.

PO2F3_MOUSE
θ value	0.000158464 (rank : 253)	NC score	0.442117 (rank : 263)
Query Neighborhood Hits	434	Target Neighborhood Hits	328	Shared Neighborhood Hits	295
SwissProt Accessions	P31362	Gene names	Pou2f3, Epoc1, Oct11, Otf-11, Otf11
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Epoc-1).

IRX2_MOUSE
θ value	0.000270298 (rank : 254)	NC score	0.286640 (rank : 318)
Query Neighborhood Hits	434	Target Neighborhood Hits	264	Shared Neighborhood Hits	208
SwissProt Accessions	P81066, O55121, Q9ERN1	Gene names	Irx2, Irxa2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

LHX4_HUMAN
θ value	0.000270298 (rank : 255)	NC score	0.533676 (rank : 239)
Query Neighborhood Hits	434	Target Neighborhood Hits	455	Shared Neighborhood Hits	333
SwissProt Accessions	Q969G2, Q8NHE0, Q8TCJ1, Q8WWX2, Q969W2	Gene names	LHX4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

LHX4_MOUSE
θ value	0.000270298 (rank : 256)	NC score	0.533198 (rank : 240)
Query Neighborhood Hits	434	Target Neighborhood Hits	457	Shared Neighborhood Hits	333
SwissProt Accessions	P53776, O08916, Q9R280	Gene names	Lhx4, Gsh-4, Gsh4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

PO6F1_HUMAN
θ value	0.00035302 (rank : 257)	NC score	0.495455 (rank : 261)
Query Neighborhood Hits	434	Target Neighborhood Hits	370	Shared Neighborhood Hits	311
SwissProt Accessions	Q14863	Gene names	POU6F1, BRN5, MPOU, TCFB1
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (mPOU homeobox protein) (Brain-specific homeobox/POU domain protein 5) (Brain-5) (Brn-5 protein).

PO6F1_MOUSE
θ value	0.00035302 (rank : 258)	NC score	0.480260 (rank : 262)
Query Neighborhood Hits	434	Target Neighborhood Hits	581	Shared Neighborhood Hits	324
SwissProt Accessions	Q07916, Q91XK3	Gene names	Pou6f1, Emb
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (Octamer-binding transcription factor EMB) (Transcription regulatory protein MCP-1).

LHX1_HUMAN
θ value	0.000461057 (rank : 259)	NC score	0.527001 (rank : 250)
Query Neighborhood Hits	434	Target Neighborhood Hits	453	Shared Neighborhood Hits	323
SwissProt Accessions	P48742, Q3MIW0	Gene names	LHX1, LIM1
Domain Architecture
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

IRX6_HUMAN
θ value	0.000602161 (rank : 260)	NC score	0.331283 (rank : 301)
Query Neighborhood Hits	434	Target Neighborhood Hits	262	Shared Neighborhood Hits	233
SwissProt Accessions	P78412, Q7Z2K0	Gene names	IRX6, IRX7, IRXB3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

LHX3_HUMAN
θ value	0.000602161 (rank : 261)	NC score	0.536314 (rank : 238)
Query Neighborhood Hits	434	Target Neighborhood Hits	474	Shared Neighborhood Hits	338
SwissProt Accessions	Q9UBR4, Q9NZB5, Q9P0I8, Q9P0I9	Gene names	LHX3
Domain Architecture
Description	LIM/homeobox protein Lhx3.

LHX3_MOUSE
θ value	0.000602161 (rank : 262)	NC score	0.530548 (rank : 245)
Query Neighborhood Hits	434	Target Neighborhood Hits	451	Shared Neighborhood Hits	329
SwissProt Accessions	P50481, Q61800, Q61801	Gene names	Lhx3, Lim-3, Lim3, Plim
Domain Architecture
Description	LIM/homeobox protein Lhx3 (Homeobox protein LIM-3) (Homeobox protein P-LIM) (LIM homeobox protein 3).

LHX1_MOUSE
θ value	0.000786445 (rank : 263)	NC score	0.527496 (rank : 249)
Query Neighborhood Hits	434	Target Neighborhood Hits	453	Shared Neighborhood Hits	323
SwissProt Accessions	P63006, P36199	Gene names	Lhx1, Lim-1, Lim1
Domain Architecture	No domain graphic available
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

PO2F2_HUMAN
θ value	0.000786445 (rank : 264)	NC score	0.434693 (rank : 265)
Query Neighborhood Hits	434	Target Neighborhood Hits	379	Shared Neighborhood Hits	297
SwissProt Accessions	P09086, Q16648, Q9BRS4	Gene names	POU2F2, OCT2, OTF2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

CUTL1_MOUSE
θ value	0.00102713 (rank : 265)	NC score	0.172685 (rank : 339)
Query Neighborhood Hits	434	Target Neighborhood Hits	1620	Shared Neighborhood Hits	232
SwissProt Accessions	P53564, O08994, P70301, Q571L6, Q91ZD2	Gene names	Cutl1, Cux, Cux1, Kiaa4047
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP) (Homeobox protein Cux).

LHX2_MOUSE
θ value	0.00102713 (rank : 266)	NC score	0.524252 (rank : 252)
Query Neighborhood Hits	434	Target Neighborhood Hits	431	Shared Neighborhood Hits	308
SwissProt Accessions	Q9Z0S2	Gene names	Lhx2
Domain Architecture
Description	LIM/homeobox protein Lhx2.

SIX2_MOUSE
θ value	0.00102713 (rank : 267)	NC score	0.398681 (rank : 275)
Query Neighborhood Hits	434	Target Neighborhood Hits	376	Shared Neighborhood Hits	316
SwissProt Accessions	Q62232, P70179	Gene names	Six2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

PO2F3_HUMAN
θ value	0.00134147 (rank : 268)	NC score	0.438306 (rank : 264)
Query Neighborhood Hits	434	Target Neighborhood Hits	319	Shared Neighborhood Hits	292
SwissProt Accessions	Q9UKI9, Q9UKR7, Q9Y504	Gene names	POU2F3, OTF11, PLA1
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Transcription factor Skn-1) (PLA-1 protein).

SIX2_HUMAN
θ value	0.00134147 (rank : 269)	NC score	0.378877 (rank : 279)
Query Neighborhood Hits	434	Target Neighborhood Hits	345	Shared Neighborhood Hits	295
SwissProt Accessions	Q9NPC8, Q9BXH7	Gene names	SIX2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

LHX2_HUMAN
θ value	0.00175202 (rank : 270)	NC score	0.526156 (rank : 251)
Query Neighborhood Hits	434	Target Neighborhood Hits	432	Shared Neighborhood Hits	308
SwissProt Accessions	P50458, O95860, Q8N1Z3	Gene names	LHX2, LH2
Domain Architecture
Description	LIM/homeobox protein Lhx2 (Homeobox protein LH-2).

IRX2_HUMAN
θ value	0.00228821 (rank : 271)	NC score	0.307114 (rank : 312)
Query Neighborhood Hits	434	Target Neighborhood Hits	358	Shared Neighborhood Hits	220
SwissProt Accessions	Q9BZI1, Q7Z2I7	Gene names	IRX2, IRXA2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

IRX6_MOUSE
θ value	0.00228821 (rank : 272)	NC score	0.343193 (rank : 298)
Query Neighborhood Hits	434	Target Neighborhood Hits	256	Shared Neighborhood Hits	229
SwissProt Accessions	Q9ER75	Gene names	Irx6, Irxb3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

PO2F2_MOUSE
θ value	0.00298849 (rank : 273)	NC score	0.433837 (rank : 266)
Query Neighborhood Hits	434	Target Neighborhood Hits	353	Shared Neighborhood Hits	292
SwissProt Accessions	Q00196, Q00197, Q00198, Q00199, Q00200, Q00201, Q05882, Q61995, Q61996, Q64245	Gene names	Pou2f2, Oct2, Otf2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

LHX9_HUMAN
θ value	0.00509761 (rank : 274)	NC score	0.509560 (rank : 255)
Query Neighborhood Hits	434	Target Neighborhood Hits	444	Shared Neighborhood Hits	309
SwissProt Accessions	Q9NQ69, Q5VUE3, Q9BYU6, Q9NQ70	Gene names	LHX9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

IRX5_HUMAN
θ value	0.00665767 (rank : 275)	NC score	0.285058 (rank : 319)
Query Neighborhood Hits	434	Target Neighborhood Hits	362	Shared Neighborhood Hits	212
SwissProt Accessions	P78411, P78416, Q7Z2E1	Gene names	IRX5, IRX2A, IRXB2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2) (IRX-2A).

CUTL1_HUMAN
θ value	0.00869519 (rank : 276)	NC score	0.159333 (rank : 340)
Query Neighborhood Hits	434	Target Neighborhood Hits	1574	Shared Neighborhood Hits	222
SwissProt Accessions	P39880, Q6NYH4, Q9UEV5	Gene names	CUTL1
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP).

IRX5_MOUSE
θ value	0.00869519 (rank : 277)	NC score	0.277126 (rank : 323)
Query Neighborhood Hits	434	Target Neighborhood Hits	324	Shared Neighborhood Hits	211
SwissProt Accessions	Q9JKQ4, Q80WV4, Q9JLL5	Gene names	Irx5, Irxb2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2).

ISL1_HUMAN
θ value	0.00869519 (rank : 278)	NC score	0.431919 (rank : 267)
Query Neighborhood Hits	434	Target Neighborhood Hits	421	Shared Neighborhood Hits	314
SwissProt Accessions	P61371, P20663, P47894	Gene names	ISL1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

ISL1_MOUSE
θ value	0.00869519 (rank : 279)	NC score	0.431919 (rank : 268)
Query Neighborhood Hits	434	Target Neighborhood Hits	421	Shared Neighborhood Hits	314
SwissProt Accessions	P61372, P20663, P47894, Q812D8	Gene names	Isl1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

IRX4_MOUSE
θ value	0.0113563 (rank : 280)	NC score	0.327376 (rank : 302)
Query Neighborhood Hits	434	Target Neighborhood Hits	286	Shared Neighborhood Hits	247
SwissProt Accessions	Q9QY61	Gene names	Irx4, Irxa3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

ISL2_MOUSE
θ value	0.0113563 (rank : 281)	NC score	0.430514 (rank : 269)
Query Neighborhood Hits	434	Target Neighborhood Hits	426	Shared Neighborhood Hits	310
SwissProt Accessions	Q9CXV0	Gene names	Isl2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

PO2F1_MOUSE
θ value	0.0113563 (rank : 282)	NC score	0.416845 (rank : 273)
Query Neighborhood Hits	434	Target Neighborhood Hits	408	Shared Neighborhood Hits	301
SwissProt Accessions	P25425, Q61994, Q63891, Q6Y681, Q7TSD0, Q8BT04, Q8K570, Q99JH0, Q9WTZ4, Q9WTZ5, Q9WTZ6	Gene names	Pou2f1, Oct-1, Otf-1, Otf1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

ATBF1_HUMAN
θ value	0.0148317 (rank : 283)	NC score	0.396974 (rank : 276)
Query Neighborhood Hits	434	Target Neighborhood Hits	1547	Shared Neighborhood Hits	343
SwissProt Accessions	Q15911, O15101, Q13719	Gene names	ATBF1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

ATBF1_MOUSE
θ value	0.0148317 (rank : 284)	NC score	0.394087 (rank : 277)
Query Neighborhood Hits	434	Target Neighborhood Hits	1841	Shared Neighborhood Hits	351
SwissProt Accessions	Q61329	Gene names	Atbf1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

CUTL2_HUMAN
θ value	0.0148317 (rank : 285)	NC score	0.178567 (rank : 337)
Query Neighborhood Hits	434	Target Neighborhood Hits	906	Shared Neighborhood Hits	185
SwissProt Accessions	O14529	Gene names	CUTL2, KIAA0293
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

DUX2_HUMAN
θ value	0.0148317 (rank : 286)	NC score	0.529785 (rank : 246)
Query Neighborhood Hits	434	Target Neighborhood Hits	173	Shared Neighborhood Hits	171
SwissProt Accessions	O75505	Gene names	DUX2
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 2.

HOMEZ_HUMAN
θ value	0.0148317 (rank : 287)	NC score	0.091928 (rank : 360)
Query Neighborhood Hits	434	Target Neighborhood Hits	110	Shared Neighborhood Hits	53
SwissProt Accessions	Q8IX15, Q6P049, Q86XB6, Q9P2A5	Gene names	HOMEZ, KIAA1443
Domain Architecture
Description	Homeobox and leucine zipper protein Homez (Homeodomain leucine zipper- containing factor).

PO3F4_HUMAN
θ value	0.0148317 (rank : 288)	NC score	0.305118 (rank : 314)
Query Neighborhood Hits	434	Target Neighborhood Hits	297	Shared Neighborhood Hits	245
SwissProt Accessions	P49335, Q5H9G9, Q99410	Gene names	POU3F4, BRN4, OTF9
Domain Architecture
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

PO3F4_MOUSE
θ value	0.0148317 (rank : 289)	NC score	0.305828 (rank : 313)
Query Neighborhood Hits	434	Target Neighborhood Hits	281	Shared Neighborhood Hits	243
SwissProt Accessions	P62515, P25216	Gene names	Pou3f4, Brn-4, Brn4, Otf9
Domain Architecture	No domain graphic available
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

RERE_MOUSE
θ value	0.0148317 (rank : 290)	NC score	0.042359 (rank : 397)
Query Neighborhood Hits	434	Target Neighborhood Hits	785	Shared Neighborhood Hits	52
SwissProt Accessions	Q80TZ9	Gene names	Rere, Atr2, Kiaa0458
Domain Architecture	No domain graphic available
Description	Arginine-glutamic acid dipeptide repeats protein (Atrophin-2).

SIX1_HUMAN
θ value	0.0148317 (rank : 291)	NC score	0.372232 (rank : 284)
Query Neighborhood Hits	434	Target Neighborhood Hits	343	Shared Neighborhood Hits	307
SwissProt Accessions	Q15475, Q96H64	Gene names	SIX1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

SIX1_MOUSE
θ value	0.0148317 (rank : 292)	NC score	0.372453 (rank : 283)
Query Neighborhood Hits	434	Target Neighborhood Hits	341	Shared Neighborhood Hits	307
SwissProt Accessions	Q62231, Q8CIL7	Gene names	Six1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

ISL2_HUMAN
θ value	0.0193708 (rank : 293)	NC score	0.429638 (rank : 270)
Query Neighborhood Hits	434	Target Neighborhood Hits	435	Shared Neighborhood Hits	318
SwissProt Accessions	Q96A47	Gene names	ISL2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

LHX9_MOUSE
θ value	0.0193708 (rank : 294)	NC score	0.509085 (rank : 258)
Query Neighborhood Hits	434	Target Neighborhood Hits	445	Shared Neighborhood Hits	309
SwissProt Accessions	Q9WUH2, Q9QYQ5, Q9QYQ6, Q9QZ00, Q9WU44	Gene names	Lhx9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

PO2F1_HUMAN
θ value	0.0193708 (rank : 295)	NC score	0.429382 (rank : 271)
Query Neighborhood Hits	434	Target Neighborhood Hits	426	Shared Neighborhood Hits	309
SwissProt Accessions	P14859, Q5TBT7, Q6PK46, Q8NEU9, Q9BPV1	Gene names	POU2F1, OCT1, OTF1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

PO3F1_MOUSE
θ value	0.0193708 (rank : 296)	NC score	0.316639 (rank : 310)
Query Neighborhood Hits	434	Target Neighborhood Hits	261	Shared Neighborhood Hits	243
SwissProt Accessions	P21952	Gene names	Pou3f1, Oct6, Otf-6, Otf6, Scip
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

PO3F1_HUMAN
θ value	0.0252991 (rank : 297)	NC score	0.313305 (rank : 311)
Query Neighborhood Hits	434	Target Neighborhood Hits	256	Shared Neighborhood Hits	242
SwissProt Accessions	Q03052	Gene names	POU3F1, OCT6, OTF6
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

ZHX1_MOUSE
θ value	0.0330416 (rank : 298)	NC score	0.236304 (rank : 329)
Query Neighborhood Hits	434	Target Neighborhood Hits	334	Shared Neighborhood Hits	215
SwissProt Accessions	P70121, Q8BQ68, Q8C6T4, Q8CJG3	Gene names	Zhx1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

SIX4_HUMAN
θ value	0.0563607 (rank : 299)	NC score	0.374413 (rank : 281)
Query Neighborhood Hits	434	Target Neighborhood Hits	342	Shared Neighborhood Hits	278
SwissProt Accessions	Q9UIU6	Gene names	SIX4
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4).

SIX4_MOUSE
θ value	0.0563607 (rank : 300)	NC score	0.389635 (rank : 278)
Query Neighborhood Hits	434	Target Neighborhood Hits	341	Shared Neighborhood Hits	281
SwissProt Accessions	Q61321, Q61322, Q61323	Gene names	Six4, Arec3
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4) (Skeletal muscle-specific ARE-binding protein AREC3).

PIT1_HUMAN
θ value	0.0736092 (rank : 301)	NC score	0.419522 (rank : 272)
Query Neighborhood Hits	434	Target Neighborhood Hits	292	Shared Neighborhood Hits	273
SwissProt Accessions	P28069, O75757, Q15132, Q15133, Q9UEL3	Gene names	POU1F1, GHF1, PIT1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

PO3F3_HUMAN
θ value	0.0736092 (rank : 302)	NC score	0.347191 (rank : 293)
Query Neighborhood Hits	434	Target Neighborhood Hits	311	Shared Neighborhood Hits	274
SwissProt Accessions	P20264, P78379	Gene names	POU3F3, BRN1, OTF8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

PO3F3_MOUSE
θ value	0.0736092 (rank : 303)	NC score	0.347222 (rank : 292)
Query Neighborhood Hits	434	Target Neighborhood Hits	308	Shared Neighborhood Hits	274
SwissProt Accessions	P31361	Gene names	Pou3f3, Brn-1, Brn1, Otf8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

ZHX2_HUMAN
θ value	0.0736092 (rank : 304)	NC score	0.228074 (rank : 330)
Query Neighborhood Hits	434	Target Neighborhood Hits	347	Shared Neighborhood Hits	187
SwissProt Accessions	Q9Y6X8	Gene names	ZHX2, AFR1, KIAA0854, RAF
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

ZHX3_MOUSE
θ value	0.0736092 (rank : 305)	NC score	0.247188 (rank : 326)
Query Neighborhood Hits	434	Target Neighborhood Hits	321	Shared Neighborhood Hits	218
SwissProt Accessions	Q8C0Q2, Q80U14	Gene names	Zhx3, Kiaa0395, Tix1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

IRX3_MOUSE
θ value	0.0961366 (rank : 306)	NC score	0.291474 (rank : 316)
Query Neighborhood Hits	434	Target Neighborhood Hits	303	Shared Neighborhood Hits	212
SwissProt Accessions	P81067	Gene names	Irx3, Irxb1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

PIT1_MOUSE
θ value	0.0961366 (rank : 307)	NC score	0.409953 (rank : 274)
Query Neighborhood Hits	434	Target Neighborhood Hits	313	Shared Neighborhood Hits	288
SwissProt Accessions	Q00286	Gene names	Pou1f1, Pit-1, Pit1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

PO3F2_HUMAN
θ value	0.0961366 (rank : 308)	NC score	0.343518 (rank : 294)
Query Neighborhood Hits	434	Target Neighborhood Hits	308	Shared Neighborhood Hits	278
SwissProt Accessions	P20265, Q14960, Q86V54, Q9UJL0	Gene names	POU3F2, BRN2, OCT7, OTF7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

PO3F2_MOUSE
θ value	0.0961366 (rank : 309)	NC score	0.343509 (rank : 295)
Query Neighborhood Hits	434	Target Neighborhood Hits	313	Shared Neighborhood Hits	278
SwissProt Accessions	P31360	Gene names	Pou3f2, Brn-2, Brn2, Otf7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

ENL_HUMAN
θ value	0.125558 (rank : 310)	NC score	0.018549 (rank : 409)
Query Neighborhood Hits	434	Target Neighborhood Hits	305	Shared Neighborhood Hits	16
SwissProt Accessions	Q03111, Q14768	Gene names	MLLT1, ENL, LTG19, YEATS1
Domain Architecture
Description	Protein ENL (YEATS domain-containing protein 1).

CUTL2_MOUSE
θ value	0.163984 (rank : 311)	NC score	0.176836 (rank : 338)
Query Neighborhood Hits	434	Target Neighborhood Hits	771	Shared Neighborhood Hits	176
SwissProt Accessions	P70298	Gene names	Cutl2
Domain Architecture
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

SIX5_HUMAN
θ value	0.163984 (rank : 312)	NC score	0.322027 (rank : 304)
Query Neighborhood Hits	434	Target Neighborhood Hits	386	Shared Neighborhood Hits	244
SwissProt Accessions	Q8N196	Gene names	SIX5, DMAHP
Domain Architecture	No domain graphic available
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein).

ZHX3_HUMAN
θ value	0.163984 (rank : 313)	NC score	0.246459 (rank : 327)
Query Neighborhood Hits	434	Target Neighborhood Hits	331	Shared Neighborhood Hits	223
SwissProt Accessions	Q9H4I2, O43145	Gene names	ZHX3, KIAA0395, TIX1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

SIX5_MOUSE
θ value	0.21417 (rank : 314)	NC score	0.259316 (rank : 325)
Query Neighborhood Hits	434	Target Neighborhood Hits	354	Shared Neighborhood Hits	211
SwissProt Accessions	P70178	Gene names	Six5, Dmahp
Domain Architecture
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein homolog).

SIX6_HUMAN
θ value	0.21417 (rank : 315)	NC score	0.324798 (rank : 303)
Query Neighborhood Hits	434	Target Neighborhood Hits	269	Shared Neighborhood Hits	243
SwissProt Accessions	O95475, Q9P1X8	Gene names	SIX6, OPTX2, SIX9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Homeodomain protein OPTX2).

SIX6_MOUSE
θ value	0.21417 (rank : 316)	NC score	0.318810 (rank : 307)
Query Neighborhood Hits	434	Target Neighborhood Hits	267	Shared Neighborhood Hits	244
SwissProt Accessions	Q9QZ28, O88423	Gene names	Six6, Optx2, Six9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Six9 protein).

IRX4_HUMAN
θ value	0.279714 (rank : 317)	NC score	0.317391 (rank : 309)
Query Neighborhood Hits	434	Target Neighborhood Hits	276	Shared Neighborhood Hits	247
SwissProt Accessions	P78413, Q9UHR2	Gene names	IRX4, IRXA3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

SIX3_HUMAN
θ value	0.279714 (rank : 318)	NC score	0.319167 (rank : 305)
Query Neighborhood Hits	434	Target Neighborhood Hits	285	Shared Neighborhood Hits	257
SwissProt Accessions	O95343	Gene names	SIX3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX3_MOUSE
θ value	0.279714 (rank : 319)	NC score	0.319111 (rank : 306)
Query Neighborhood Hits	434	Target Neighborhood Hits	289	Shared Neighborhood Hits	257
SwissProt Accessions	Q62233, P70176, P70177	Gene names	Six3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

IRX1_HUMAN
θ value	0.365318 (rank : 320)	NC score	0.278527 (rank : 321)
Query Neighborhood Hits	434	Target Neighborhood Hits	285	Shared Neighborhood Hits	219
SwissProt Accessions	P78414, Q7Z2F8, Q8N312	Gene names	IRX1, IRXA1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

IRX1_MOUSE
θ value	0.365318 (rank : 321)	NC score	0.275090 (rank : 324)
Query Neighborhood Hits	434	Target Neighborhood Hits	269	Shared Neighborhood Hits	215
SwissProt Accessions	P81068, O55120, Q9JLL6	Gene names	Irx1, Irxa1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

MEIS2_HUMAN
θ value	0.365318 (rank : 322)	NC score	0.097732 (rank : 351)
Query Neighborhood Hits	434	Target Neighborhood Hits	182	Shared Neighborhood Hits	105
SwissProt Accessions	O14770, Q96KI4, Q96KI5, Q9NRS1, Q9NRS2, Q9NRS3	Gene names	MEIS2, MRG1
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

PBX2_HUMAN
θ value	0.365318 (rank : 323)	NC score	0.374281 (rank : 282)
Query Neighborhood Hits	434	Target Neighborhood Hits	350	Shared Neighborhood Hits	293
SwissProt Accessions	P40425	Gene names	PBX2, G17
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2) (Protein G17).

PBX2_MOUSE
θ value	0.365318 (rank : 324)	NC score	0.375171 (rank : 280)
Query Neighborhood Hits	434	Target Neighborhood Hits	341	Shared Neighborhood Hits	293
SwissProt Accessions	O35984	Gene names	Pbx2
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2).

YLPM1_HUMAN
θ value	0.365318 (rank : 325)	NC score	0.034004 (rank : 399)
Query Neighborhood Hits	434	Target Neighborhood Hits	670	Shared Neighborhood Hits	46
SwissProt Accessions	P49750, P49752, Q96I64, Q9P1V7	Gene names	YLPM1, C14orf170, ZAP3
Domain Architecture
Description	YLP motif-containing protein 1 (Nuclear protein ZAP3) (ZAP113).

AUTS2_HUMAN
θ value	0.62314 (rank : 326)	NC score	0.025169 (rank : 402)
Query Neighborhood Hits	434	Target Neighborhood Hits	342	Shared Neighborhood Hits	28
SwissProt Accessions	Q8WXX7, Q9Y4F2	Gene names	AUTS2, KIAA0442
Domain Architecture	No domain graphic available
Description	Autism susceptibility gene 2 protein.

BLNK_MOUSE
θ value	0.62314 (rank : 327)	NC score	0.013192 (rank : 420)
Query Neighborhood Hits	434	Target Neighborhood Hits	296	Shared Neighborhood Hits	18
SwissProt Accessions	Q9QUN3, O88504	Gene names	Blnk, Bash, Ly57, Slp65
Domain Architecture	No domain graphic available
Description	B-cell linker protein (Cytoplasmic adapter protein) (B-cell adapter containing SH2 domain protein) (B-cell adapter containing Src homology 2 domain protein) (Src homology 2 domain-containing leukocyte protein of 65 kDa) (Slp-65) (Lymphocyte antigen 57).

CHD9_HUMAN
θ value	0.62314 (rank : 328)	NC score	0.008401 (rank : 432)
Query Neighborhood Hits	434	Target Neighborhood Hits	343	Shared Neighborhood Hits	12
SwissProt Accessions	Q3L8U1, O15025, Q1WF12, Q6DTK9, Q9H9V7	Gene names	CHD9, KIAA0308, KISH2, PRIC320
Domain Architecture	No domain graphic available
Description	Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-) (ATP- dependent helicase CHD9) (CHD-9) (Chromatin-related mesenchymal modulator) (CReMM) (Chromatin remodeling factor CHROM1) (Peroxisomal proliferator-activated receptor A-interacting complex 320 kDa protein) (PPAR-alpha-interacting complex protein 320 kDa) (Kismet homolog 2).

IRX3_HUMAN
θ value	0.62314 (rank : 329)	NC score	0.288933 (rank : 317)
Query Neighborhood Hits	434	Target Neighborhood Hits	342	Shared Neighborhood Hits	213
SwissProt Accessions	P78415, Q7Z4A4, Q7Z4A5, Q8IVC6	Gene names	IRX3, IRXB1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

TF7L1_MOUSE
θ value	0.62314 (rank : 330)	NC score	0.012418 (rank : 421)
Query Neighborhood Hits	434	Target Neighborhood Hits	131	Shared Neighborhood Hits	7
SwissProt Accessions	Q9Z1J1, O70450, O70573	Gene names	Tcf7l1, Tcf3
Domain Architecture
Description	Transcription factor 7-like 1 (HMG box transcription factor 3) (TCF-3) (mTCF-3).

WNK4_HUMAN
θ value	0.62314 (rank : 331)	NC score	-0.010565 (rank : 482)
Query Neighborhood Hits	434	Target Neighborhood Hits	1043	Shared Neighborhood Hits	21
SwissProt Accessions	Q96J92, Q8N8X3, Q8N8Z2, Q96DT8, Q9BYS5	Gene names	WNK4, PRKWNK4
Domain Architecture
Description	Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein kinase with no lysine 4) (Protein kinase, lysine-deficient 4).

ZHX1_HUMAN
θ value	0.62314 (rank : 332)	NC score	0.225071 (rank : 331)
Query Neighborhood Hits	434	Target Neighborhood Hits	307	Shared Neighborhood Hits	208
SwissProt Accessions	Q9UKY1, Q8IWD8	Gene names	ZHX1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

ZHX2_MOUSE
θ value	0.62314 (rank : 333)	NC score	0.217752 (rank : 332)
Query Neighborhood Hits	434	Target Neighborhood Hits	435	Shared Neighborhood Hits	183
SwissProt Accessions	Q8C0C0	Gene names	Zhx2, Afr1, Raf
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

BAG3_MOUSE
θ value	0.813845 (rank : 334)	NC score	0.020765 (rank : 406)
Query Neighborhood Hits	434	Target Neighborhood Hits	513	Shared Neighborhood Hits	35
SwissProt Accessions	Q9JLV1, Q9JJC7	Gene names	Bag3, Bis
Domain Architecture
Description	BAG family molecular chaperone regulator 3 (BCL-2-binding athanogene- 3) (BAG-3) (Bcl-2-binding protein Bis).

PER3_HUMAN
θ value	0.813845 (rank : 335)	NC score	0.019977 (rank : 408)
Query Neighborhood Hits	434	Target Neighborhood Hits	479	Shared Neighborhood Hits	44
SwissProt Accessions	P56645, Q5H8X4, Q969K6, Q96S77, Q96S78, Q9C0J3, Q9NSP9, Q9UGU8	Gene names	PER3
Domain Architecture
Description	Period circadian protein 3 (hPER3).

SETX_HUMAN
θ value	0.813845 (rank : 336)	NC score	0.010689 (rank : 427)
Query Neighborhood Hits	434	Target Neighborhood Hits	368	Shared Neighborhood Hits	22
SwissProt Accessions	Q7Z333, O75120, Q3KQX4, Q68DW5, Q6AZD7, Q7Z3J6, Q8WX33, Q9H9D1, Q9NVP9	Gene names	SETX, ALS4, KIAA0625, SCAR1
Domain Architecture
Description	Probable helicase senataxin (EC 3.6.1.-) (SEN1 homolog).

ATN1_HUMAN
θ value	1.06291 (rank : 337)	NC score	0.041431 (rank : 398)
Query Neighborhood Hits	434	Target Neighborhood Hits	676	Shared Neighborhood Hits	44
SwissProt Accessions	P54259, Q99495, Q99621, Q9UEK7	Gene names	ATN1, DRPLA
Domain Architecture
Description	Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein).

CHD9_MOUSE
θ value	1.06291 (rank : 338)	NC score	0.008036 (rank : 435)
Query Neighborhood Hits	434	Target Neighborhood Hits	427	Shared Neighborhood Hits	18
SwissProt Accessions	Q8BYH8, Q7TMV5, Q8BJG8, Q8BZJ2, Q8CHG8	Gene names	Chd9, Kiaa0308, Pric320
Domain Architecture	No domain graphic available
Description	Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-) (ATP- dependent helicase CHD9) (CHD-9) (Peroxisomal proliferator-activated receptor A-interacting complex 320 kDa protein) (PPAR-alpha- interacting complex protein 320 kDa).

FHOD1_MOUSE
θ value	1.06291 (rank : 339)	NC score	0.014751 (rank : 416)
Query Neighborhood Hits	434	Target Neighborhood Hits	217	Shared Neighborhood Hits	21
SwissProt Accessions	Q6P9Q4, Q8BMK2	Gene names	Fhod1, Fhos1
Domain Architecture	No domain graphic available
Description	FH1/FH2 domain-containing protein (Formin homolog overexpressed in spleen) (FHOS) (Formin homology 2 domain-containing protein 1).

IQEC2_HUMAN
θ value	1.06291 (rank : 340)	NC score	0.016723 (rank : 412)
Query Neighborhood Hits	434	Target Neighborhood Hits	403	Shared Neighborhood Hits	28
SwissProt Accessions	Q5JU85, O60275	Gene names	IQSEC2, KIAA0522
Domain Architecture	No domain graphic available
Description	IQ motif and Sec7 domain-containing protein 2.

IQEC2_MOUSE
θ value	1.06291 (rank : 341)	NC score	0.015598 (rank : 414)
Query Neighborhood Hits	434	Target Neighborhood Hits	417	Shared Neighborhood Hits	27
SwissProt Accessions	Q5DU25	Gene names	Iqsec2, Kiaa0522
Domain Architecture	No domain graphic available
Description	IQ motif and Sec7 domain-containing protein 2.

LRCH2_HUMAN
θ value	1.06291 (rank : 342)	NC score	0.000780 (rank : 467)
Query Neighborhood Hits	434	Target Neighborhood Hits	315	Shared Neighborhood Hits	3
SwissProt Accessions	Q5VUJ6, Q9HA88, Q9P233	Gene names	LRCH2, KIAA1495
Domain Architecture	No domain graphic available
Description	Leucine-rich repeats and calponin homology domain-containing protein 2.

MEIS2_MOUSE
θ value	1.06291 (rank : 343)	NC score	0.101102 (rank : 347)
Query Neighborhood Hits	434	Target Neighborhood Hits	208	Shared Neighborhood Hits	113
SwissProt Accessions	P97367, O35676, O35677, P97403, P97404	Gene names	Meis2, Mrg1, Stra10
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

RHOX5_MOUSE
θ value	1.06291 (rank : 344)	NC score	0.239082 (rank : 328)
Query Neighborhood Hits	434	Target Neighborhood Hits	69	Shared Neighborhood Hits	55
SwissProt Accessions	P52651	Gene names	Rhox5, Pem
Domain Architecture	No domain graphic available
Description	Homeobox protein Rhox5 (Reproductive homeobox on chromosome X 5) (Homeobox protein Pem) (Placenta and embryonic expression protein).

RPB1_HUMAN
θ value	1.06291 (rank : 345)	NC score	0.029808 (rank : 401)
Query Neighborhood Hits	434	Target Neighborhood Hits	362	Shared Neighborhood Hits	31
SwissProt Accessions	P24928	Gene names	POLR2A
Domain Architecture
Description	DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6) (RPB1).

RPB1_MOUSE
θ value	1.06291 (rank : 346)	NC score	0.030207 (rank : 400)
Query Neighborhood Hits	434	Target Neighborhood Hits	363	Shared Neighborhood Hits	32
SwissProt Accessions	P08775	Gene names	Polr2a, Rpii215, Rpo2-1
Domain Architecture
Description	DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6) (RPB1).

ZYX_HUMAN
θ value	1.06291 (rank : 347)	NC score	0.049822 (rank : 394)
Query Neighborhood Hits	434	Target Neighborhood Hits	387	Shared Neighborhood Hits	43
SwissProt Accessions	Q15942	Gene names	ZYX
Domain Architecture
Description	Zyxin (Zyxin-2).

EOMES_MOUSE
θ value	1.38821 (rank : 348)	NC score	0.005596 (rank : 446)
Query Neighborhood Hits	434	Target Neighborhood Hits	59	Shared Neighborhood Hits	6
SwissProt Accessions	O54839, Q9QYG7	Gene names	Eomes, Tbr2
Domain Architecture
Description	Eomesodermin homolog.

PO4F3_HUMAN
θ value	1.38821 (rank : 349)	NC score	0.349351 (rank : 291)
Query Neighborhood Hits	434	Target Neighborhood Hits	307	Shared Neighborhood Hits	284
SwissProt Accessions	Q15319, O60557	Gene names	POU4F3, BRN3C
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

PO4F3_MOUSE
θ value	1.38821 (rank : 350)	NC score	0.349992 (rank : 290)
Query Neighborhood Hits	434	Target Neighborhood Hits	311	Shared Neighborhood Hits	286
SwissProt Accessions	Q63955	Gene names	Pou4f3, Brn-3c, Brn3c
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

TB182_HUMAN
θ value	1.38821 (rank : 351)	NC score	0.020104 (rank : 407)
Query Neighborhood Hits	434	Target Neighborhood Hits	414	Shared Neighborhood Hits	27
SwissProt Accessions	Q9C0C2	Gene names	TNKS1BP1, KIAA1741, TAB182
Domain Architecture	No domain graphic available
Description	182 kDa tankyrase 1-binding protein.

TBX15_MOUSE
θ value	1.38821 (rank : 352)	NC score	0.005788 (rank : 443)
Query Neighborhood Hits	434	Target Neighborhood Hits	54	Shared Neighborhood Hits	5
SwissProt Accessions	O70306, O54840	Gene names	Tbx15, Tbx14, Tbx8
Domain Architecture
Description	T-box transcription factor TBX15 (T-box protein 15) (MmTBx8).

MUCDL_HUMAN
θ value	1.81305 (rank : 353)	NC score	0.011825 (rank : 423)
Query Neighborhood Hits	434	Target Neighborhood Hits	777	Shared Neighborhood Hits	55
SwissProt Accessions	Q9HBB8, Q9H746, Q9HAU3, Q9HBB5, Q9HBB6, Q9HBB7, Q9NX86, Q9NXI9	Gene names	MUCDHL
Domain Architecture
Description	Mucin and cadherin-like protein precursor (Mu-protocadherin).

PLS4_MOUSE
θ value	1.81305 (rank : 354)	NC score	0.011933 (rank : 422)
Query Neighborhood Hits	434	Target Neighborhood Hits	34	Shared Neighborhood Hits	6
SwissProt Accessions	P58196, Q3TMI2, Q8BH62	Gene names	Plscr4
Domain Architecture	No domain graphic available
Description	Phospholipid scramblase 4 (PL scramblase 4) (Ca(2+)-dependent phospholipid scramblase 4).

BAG3_HUMAN
θ value	2.36792 (rank : 355)	NC score	0.017601 (rank : 410)
Query Neighborhood Hits	434	Target Neighborhood Hits	314	Shared Neighborhood Hits	22
SwissProt Accessions	O95817, Q9NT20, Q9P120	Gene names	BAG3, BIS
Domain Architecture
Description	BAG family molecular chaperone regulator 3 (BCL-2-binding athanogene- 3) (BAG-3) (Bcl-2-binding protein Bis) (Docking protein CAIR-1).

CBX4_HUMAN
θ value	2.36792 (rank : 356)	NC score	0.008295 (rank : 433)
Query Neighborhood Hits	434	Target Neighborhood Hits	68	Shared Neighborhood Hits	4
SwissProt Accessions	O00257, Q96C04	Gene names	CBX4
Domain Architecture
Description	Chromobox protein homolog 4 (Polycomb 2 homolog) (Pc2) (hPc2).

NFAC3_MOUSE
θ value	2.36792 (rank : 357)	NC score	0.006261 (rank : 440)
Query Neighborhood Hits	434	Target Neighborhood Hits	106	Shared Neighborhood Hits	5
SwissProt Accessions	P97305, Q60896	Gene names	Nfatc3, Nfat4
Domain Architecture
Description	Nuclear factor of activated T-cells, cytoplasmic 3 (NF-ATc3) (NFATc3) (T cell transcription factor NFAT4) (NF-AT4) (NFATx).

NPAS2_HUMAN
θ value	2.36792 (rank : 358)	NC score	0.003100 (rank : 457)
Query Neighborhood Hits	434	Target Neighborhood Hits	150	Shared Neighborhood Hits	5
SwissProt Accessions	Q99743, Q99629	Gene names	NPAS2
Domain Architecture
Description	Neuronal PAS domain-containing protein 2 (Neuronal PAS2) (Member of PAS protein 4) (MOP4).

PBX1_HUMAN
θ value	2.36792 (rank : 359)	NC score	0.340176 (rank : 299)
Query Neighborhood Hits	434	Target Neighborhood Hits	317	Shared Neighborhood Hits	282
SwissProt Accessions	P40424	Gene names	PBX1, PRL
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1) (Homeobox protein PRL).

PBX1_MOUSE
θ value	2.36792 (rank : 360)	NC score	0.340176 (rank : 300)
Query Neighborhood Hits	434	Target Neighborhood Hits	317	Shared Neighborhood Hits	282
SwissProt Accessions	P41778	Gene names	Pbx1, Pbx-1
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1).

PEF1_MOUSE
θ value	2.36792 (rank : 361)	NC score	0.005832 (rank : 442)
Query Neighborhood Hits	434	Target Neighborhood Hits	112	Shared Neighborhood Hits	7
SwissProt Accessions	Q8BFY6, Q8VCT5, Q9CYW8, Q9D934	Gene names	Pef1
Domain Architecture	No domain graphic available
Description	Peflin (PEF protein with a long N-terminal hydrophobic domain) (Penta- EF hand domain-containing protein 1).

PO4F2_HUMAN
θ value	2.36792 (rank : 362)	NC score	0.351840 (rank : 289)
Query Neighborhood Hits	434	Target Neighborhood Hits	310	Shared Neighborhood Hits	285
SwissProt Accessions	Q12837, Q13883, Q14987	Gene names	POU4F2, BRN3B
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B).

PO4F2_MOUSE
θ value	2.36792 (rank : 363)	NC score	0.352969 (rank : 288)
Query Neighborhood Hits	434	Target Neighborhood Hits	312	Shared Neighborhood Hits	285
SwissProt Accessions	Q63934, Q63954	Gene names	Pou4f2, Brn3b
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B) (Brn-3.2).

PO5F1_MOUSE
θ value	2.36792 (rank : 364)	NC score	0.318484 (rank : 308)
Query Neighborhood Hits	434	Target Neighborhood Hits	305	Shared Neighborhood Hits	261
SwissProt Accessions	P20263, Q63843	Gene names	Pou5f1, Oct-3, Oct-4, Otf-3, Otf3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4) (NF-A3).

SYN3_MOUSE
θ value	2.36792 (rank : 365)	NC score	0.006654 (rank : 438)
Query Neighborhood Hits	434	Target Neighborhood Hits	200	Shared Neighborhood Hits	14
SwissProt Accessions	Q8JZP2	Gene names	Syn3
Domain Architecture	No domain graphic available
Description	Synapsin-3 (Synapsin III).

US6NL_HUMAN
θ value	2.36792 (rank : 366)	NC score	0.007077 (rank : 437)
Query Neighborhood Hits	434	Target Neighborhood Hits	201	Shared Neighborhood Hits	21
SwissProt Accessions	Q92738, Q15400, Q7L0K9	Gene names	USP6NL, KIAA0019
Domain Architecture	No domain graphic available
Description	USP6 N-terminal-like protein (Related to the N-terminus of tre) (RN- tre).

BMP6_HUMAN
θ value	3.0926 (rank : 367)	NC score	0.000703 (rank : 469)
Query Neighborhood Hits	434	Target Neighborhood Hits	82	Shared Neighborhood Hits	4
SwissProt Accessions	P22004	Gene names	BMP6, VGR
Domain Architecture
Description	Bone morphogenetic protein 6 precursor (BMP-6).

GA2L1_MOUSE
θ value	3.0926 (rank : 368)	NC score	0.004420 (rank : 450)
Query Neighborhood Hits	434	Target Neighborhood Hits	114	Shared Neighborhood Hits	8
SwissProt Accessions	Q8JZP9, Q5SVG0, Q8K573	Gene names	Gas2l1
Domain Architecture	No domain graphic available
Description	GAS2-like protein 1 (Growth arrest-specific 2-like 1).

HMBX1_MOUSE
θ value	3.0926 (rank : 369)	NC score	0.183507 (rank : 336)
Query Neighborhood Hits	434	Target Neighborhood Hits	117	Shared Neighborhood Hits	102
SwissProt Accessions	Q8BJA3, Q80WC2, Q8BWE7, Q99LV1	Gene names	Hmbox1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

MLL3_MOUSE
θ value	3.0926 (rank : 370)	NC score	0.013626 (rank : 419)
Query Neighborhood Hits	434	Target Neighborhood Hits	1399	Shared Neighborhood Hits	77
SwissProt Accessions	Q8BRH4, Q5YLV9, Q8BK12, Q8C6M3, Q923H5, Q923H6	Gene names	Mll3
Domain Architecture
Description	Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog (EC 2.1.1.43) (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3).

PCLO_MOUSE
θ value	3.0926 (rank : 371)	NC score	0.015779 (rank : 413)
Query Neighborhood Hits	434	Target Neighborhood Hits	2275	Shared Neighborhood Hits	100
SwissProt Accessions	Q9QYX7, Q8CF91, Q8CF92, Q9QYX6, Q9QZJ0	Gene names	Pclo, Acz
Domain Architecture
Description	Protein piccolo (Aczonin) (Multidomain presynaptic cytomatrix protein) (Brain-derived HLMN protein).

SRRM2_HUMAN
θ value	3.0926 (rank : 372)	NC score	0.004220 (rank : 451)
Query Neighborhood Hits	434	Target Neighborhood Hits	1296	Shared Neighborhood Hits	55
SwissProt Accessions	Q9UQ35, O15038, O94803, Q6NSL3, Q6PIM3, Q6PK40, Q8IW17, Q96GY7, Q9P0G1, Q9UHA8, Q9UQ36, Q9UQ37, Q9UQ38, Q9UQ40	Gene names	SRRM2, KIAA0324, SRL300, SRM300
Domain Architecture	No domain graphic available
Description	Serine/arginine repetitive matrix protein 2 (Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa) (Ser/Arg- related nuclear matrix protein) (SR-related nuclear matrix protein of 300 kDa) (Splicing coactivator subunit SRm300) (300 kDa nuclear matrix antigen).

ALEX_MOUSE
θ value	4.03905 (rank : 373)	NC score	0.008145 (rank : 434)
Query Neighborhood Hits	434	Target Neighborhood Hits	197	Shared Neighborhood Hits	13
SwissProt Accessions	Q6R0H6, Q8BIR3	Gene names	Gnas, Gnas1
Domain Architecture	No domain graphic available
Description	Protein ALEX (Alternative gene product encoded by XL-exon).

CREB5_HUMAN
θ value	4.03905 (rank : 374)	NC score	0.005366 (rank : 447)
Query Neighborhood Hits	434	Target Neighborhood Hits	222	Shared Neighborhood Hits	14
SwissProt Accessions	Q02930, Q05886, Q06246	Gene names	CREB5, CREBPA
Domain Architecture
Description	cAMP response element-binding protein 5 (CRE-BPa).

FOG1_MOUSE
θ value	4.03905 (rank : 375)	NC score	-0.005875 (rank : 480)
Query Neighborhood Hits	434	Target Neighborhood Hits	1237	Shared Neighborhood Hits	52
SwissProt Accessions	O35615	Gene names	Zfpm1, Fog, Fog1
Domain Architecture	No domain graphic available
Description	Zinc finger protein ZFPM1 (Zinc finger protein multitype 1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1).

HMBX1_HUMAN
θ value	4.03905 (rank : 376)	NC score	0.184495 (rank : 335)
Query Neighborhood Hits	434	Target Neighborhood Hits	118	Shared Neighborhood Hits	102
SwissProt Accessions	Q6NT76, Q3Y6P1, Q96GS5, Q9H701	Gene names	HMBOX1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

K1802_HUMAN
θ value	4.03905 (rank : 377)	NC score	0.002031 (rank : 461)
Query Neighborhood Hits	434	Target Neighborhood Hits	1378	Shared Neighborhood Hits	63
SwissProt Accessions	Q96JM3, Q6P181, Q8NC88, Q9BST0	Gene names	KIAA1802, C13orf8
Domain Architecture	No domain graphic available
Description	Zinc finger protein KIAA1802.

LRP5_HUMAN
θ value	4.03905 (rank : 378)	NC score	-0.002141 (rank : 478)
Query Neighborhood Hits	434	Target Neighborhood Hits	224	Shared Neighborhood Hits	4
SwissProt Accessions	O75197, Q96TD6, Q9UP66	Gene names	LRP5, LRP7
Domain Architecture
Description	Low-density lipoprotein receptor-related protein 5 precursor.

MILK1_MOUSE
θ value	4.03905 (rank : 379)	NC score	0.016915 (rank : 411)
Query Neighborhood Hits	434	Target Neighborhood Hits	788	Shared Neighborhood Hits	65
SwissProt Accessions	Q8BGT6, Q8BJ60	Gene names	Mirab13, D15Mit260, Kiaa1668
Domain Architecture
Description	Molecule interacting with Rab13 (MIRab13) (MICAL-like protein 1).

NPHP4_MOUSE
θ value	4.03905 (rank : 380)	NC score	0.009324 (rank : 429)
Query Neighborhood Hits	434	Target Neighborhood Hits	62	Shared Neighborhood Hits	3
SwissProt Accessions	P59240	Gene names	Nphp4
Domain Architecture	No domain graphic available
Description	Nephrocystin-4 (Nephroretinin).

PO4F1_HUMAN
θ value	4.03905 (rank : 381)	NC score	0.353236 (rank : 287)
Query Neighborhood Hits	434	Target Neighborhood Hits	342	Shared Neighborhood Hits	290
SwissProt Accessions	Q01851, Q14986, Q15318	Gene names	POU4F1, BRN3A, RDC1
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Oct-T1) (Homeobox/POU domain protein RDC-1).

PO4F1_MOUSE
θ value	4.03905 (rank : 382)	NC score	0.356773 (rank : 286)
Query Neighborhood Hits	434	Target Neighborhood Hits	345	Shared Neighborhood Hits	289
SwissProt Accessions	P17208	Gene names	Pou4f1, Brn-3, Brn3, Brn3a
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Brn-3.0).

SC24C_HUMAN
θ value	4.03905 (rank : 383)	NC score	0.024376 (rank : 403)
Query Neighborhood Hits	434	Target Neighborhood Hits	662	Shared Neighborhood Hits	63
SwissProt Accessions	P53992, Q8WV25	Gene names	SEC24C, KIAA0079
Domain Architecture
Description	Protein transport protein Sec24C (SEC24-related protein C).

SFPQ_MOUSE
θ value	4.03905 (rank : 384)	NC score	0.000106 (rank : 472)
Query Neighborhood Hits	434	Target Neighborhood Hits	958	Shared Neighborhood Hits	35
SwissProt Accessions	Q8VIJ6, Q9ERW2	Gene names	Sfpq
Domain Architecture	No domain graphic available
Description	Splicing factor, proline- and glutamine-rich (Polypyrimidine tract- binding protein-associated-splicing factor) (PTB-associated-splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit).

SMAL1_MOUSE
θ value	4.03905 (rank : 385)	NC score	0.008470 (rank : 431)
Query Neighborhood Hits	434	Target Neighborhood Hits	157	Shared Neighborhood Hits	11
SwissProt Accessions	Q8BJL0, Q8BVK7, Q8BXW4, Q8K309, Q9EQK8, Q9QYC4	Gene names	Smarcal1, Harp
Domain Architecture	No domain graphic available
Description	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 1) (HepA-related protein) (mharp).

SRRM1_HUMAN
θ value	4.03905 (rank : 386)	NC score	0.004625 (rank : 449)
Query Neighborhood Hits	434	Target Neighborhood Hits	690	Shared Neighborhood Hits	34
SwissProt Accessions	Q8IYB3, O60585, Q5VVN4	Gene names	SRRM1, SRM160
Domain Architecture	No domain graphic available
Description	Serine/arginine repetitive matrix protein 1 (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160).

ARI1A_HUMAN
θ value	5.27518 (rank : 387)	NC score	0.014431 (rank : 418)
Query Neighborhood Hits	434	Target Neighborhood Hits	787	Shared Neighborhood Hits	53
SwissProt Accessions	O14497, Q53FK9, Q5T0W1, Q5T0W2, Q5T0W3, Q8NFD6, Q96T89, Q9BY33, Q9HBJ5, Q9UPZ1	Gene names	ARID1A, C1orf4, OSA1, SMARCF1
Domain Architecture
Description	AT-rich interactive domain-containing protein 1A (ARID domain- containing protein 1A) (SWI/SNF-related, matrix-associated, actin- dependent regulator of chromatin subfamily F member 1) (SWI-SNF complex protein p270) (B120) (SWI-like protein) (Osa homolog 1) (hOSA1) (hELD) (BRG1-associated factor 250) (BAF250) (BRG1-associated factor 250a) (BAF250A).

DVL3_HUMAN
θ value	5.27518 (rank : 388)	NC score	0.002754 (rank : 458)
Query Neighborhood Hits	434	Target Neighborhood Hits	194	Shared Neighborhood Hits	10
SwissProt Accessions	Q92997, O14642, Q13531, Q8N5E9, Q92607	Gene names	DVL3, KIAA0208
Domain Architecture
Description	Segment polarity protein dishevelled homolog DVL-3 (Dishevelled-3) (DSH homolog 3).

FOXC1_HUMAN
θ value	5.27518 (rank : 389)	NC score	0.000863 (rank : 466)
Query Neighborhood Hits	434	Target Neighborhood Hits	208	Shared Neighborhood Hits	14
SwissProt Accessions	Q12948, Q86UP7, Q9BYM1, Q9NUE5, Q9UDD0, Q9UP06	Gene names	FOXC1, FKHL7, FREAC3
Domain Architecture
Description	Forkhead box protein C1 (Forkhead-related protein FKHL7) (Forkhead- related transcription factor 3) (FREAC-3).

FUBP1_MOUSE
θ value	5.27518 (rank : 390)	NC score	0.002654 (rank : 460)
Query Neighborhood Hits	434	Target Neighborhood Hits	144	Shared Neighborhood Hits	8
SwissProt Accessions	Q91WJ8, Q8C0Y8	Gene names	Fubp1, D3Ertd330e
Domain Architecture
Description	Far upstream element-binding protein 1 (FUSE-binding protein 1) (FBP).

HRG_HUMAN
θ value	5.27518 (rank : 391)	NC score	0.015585 (rank : 415)
Query Neighborhood Hits	434	Target Neighborhood Hits	43	Shared Neighborhood Hits	6
SwissProt Accessions	P04196	Gene names	HRG
Domain Architecture
Description	Histidine-rich glycoprotein precursor (Histidine-proline-rich glycoprotein) (HPRG).

KCNK4_HUMAN
θ value	5.27518 (rank : 392)	NC score	0.000891 (rank : 465)
Query Neighborhood Hits	434	Target Neighborhood Hits	109	Shared Neighborhood Hits	5
SwissProt Accessions	Q9NYG8, Q96T94	Gene names	KCNK4, TRAAK
Domain Architecture
Description	Potassium channel subfamily K member 4 (TWIK-related arachidonic acid- stimulated potassium channel protein) (TRAAK) (Two pore K(+) channel KT4.1).

M3K13_HUMAN
θ value	5.27518 (rank : 393)	NC score	-0.016124 (rank : 485)
Query Neighborhood Hits	434	Target Neighborhood Hits	911	Shared Neighborhood Hits	13
SwissProt Accessions	O43283	Gene names	MAP3K13, LZK
Domain Architecture	No domain graphic available
Description	Mitogen-activated protein kinase kinase kinase 13 (EC 2.7.11.25) (Mixed lineage kinase) (MLK) (Leucine zipper-bearing kinase).

PBX4_MOUSE
θ value	5.27518 (rank : 394)	NC score	0.358224 (rank : 285)
Query Neighborhood Hits	434	Target Neighborhood Hits	324	Shared Neighborhood Hits	283
SwissProt Accessions	Q99NE9, Q8CFL2, Q99NE8	Gene names	Pbx4
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 4 (Homeobox protein PBX4).

PO5F1_HUMAN
θ value	5.27518 (rank : 395)	NC score	0.302953 (rank : 315)
Query Neighborhood Hits	434	Target Neighborhood Hits	321	Shared Neighborhood Hits	272
SwissProt Accessions	Q01860, P31359, Q15167, Q15168, Q16422	Gene names	POU5F1, OCT3, OCT4, OTF3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4).

REM1_MOUSE
θ value	5.27518 (rank : 396)	NC score	-0.006363 (rank : 481)
Query Neighborhood Hits	434	Target Neighborhood Hits	255	Shared Neighborhood Hits	3
SwissProt Accessions	O35929	Gene names	Rem1, Rem
Domain Architecture
Description	GTP-binding protein REM 1 (Rad and Gem-like GTP-binding protein 1).

TAF4_HUMAN
θ value	5.27518 (rank : 397)	NC score	0.014539 (rank : 417)
Query Neighborhood Hits	434	Target Neighborhood Hits	687	Shared Neighborhood Hits	35
SwissProt Accessions	O00268, Q5TBP6, Q99721, Q9BR40, Q9BX42	Gene names	TAF4, TAF2C, TAF2C1, TAF4A, TAFII130, TAFII135
Domain Architecture
Description	Transcription initiation factor TFIID subunit 4 (TBP-associated factor 4) (Transcription initiation factor TFIID 135 kDa subunit) (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130) (TAFII130).

TBX15_HUMAN
θ value	5.27518 (rank : 398)	NC score	0.003788 (rank : 454)
Query Neighborhood Hits	434	Target Neighborhood Hits	54	Shared Neighborhood Hits	5
SwissProt Accessions	Q96SF7, Q5T9S7	Gene names	TBX15, TBX14
Domain Architecture	No domain graphic available
Description	T-box transcription factor TBX15 (T-box protein 15).

WHRN_MOUSE
θ value	5.27518 (rank : 399)	NC score	0.001053 (rank : 463)
Query Neighborhood Hits	434	Target Neighborhood Hits	412	Shared Neighborhood Hits	21
SwissProt Accessions	Q80VW5, Q80TC2, Q80VW4	Gene names	Whrn, Kiaa1526
Domain Architecture	No domain graphic available
Description	Whirlin.

BAT2_HUMAN
θ value	6.88961 (rank : 400)	NC score	0.021825 (rank : 404)
Query Neighborhood Hits	434	Target Neighborhood Hits	931	Shared Neighborhood Hits	56
SwissProt Accessions	P48634, O95875, Q5SQ29, Q5SQ30, Q5ST84, Q5STX6, Q5STX7, Q68DW9, Q6P9P7, Q6PIN1, Q96QC6	Gene names	BAT2, G2
Domain Architecture
Description	Large proline-rich protein BAT2 (HLA-B-associated transcript 2).

BCOR_MOUSE
θ value	6.88961 (rank : 401)	NC score	-0.003090 (rank : 479)
Query Neighborhood Hits	434	Target Neighborhood Hits	521	Shared Neighborhood Hits	16
SwissProt Accessions	Q8CGN4, Q6PDK5, Q6ZPM3, Q8BKF5, Q8CGN1, Q8CGN2, Q8CGN3	Gene names	Bcor, Kiaa1575
Domain Architecture	No domain graphic available
Description	BCoR protein (BCL-6 corepressor).

DCJ14_MOUSE
θ value	6.88961 (rank : 402)	NC score	0.000163 (rank : 470)
Query Neighborhood Hits	434	Target Neighborhood Hits	99	Shared Neighborhood Hits	4
SwissProt Accessions	Q921R4, Q3TX73, Q8BUU3, Q9CYB7	Gene names	Dnajc14
Domain Architecture	No domain graphic available
Description	DnaJ homolog subfamily C member 14.

GSCR1_HUMAN
θ value	6.88961 (rank : 403)	NC score	0.021548 (rank : 405)
Query Neighborhood Hits	434	Target Neighborhood Hits	674	Shared Neighborhood Hits	44
SwissProt Accessions	Q9NZM4	Gene names	GLTSCR1
Domain Architecture	No domain graphic available
Description	Glioma tumor suppressor candidate region gene 1 protein.

HNF1B_HUMAN
θ value	6.88961 (rank : 404)	NC score	0.043227 (rank : 396)
Query Neighborhood Hits	434	Target Neighborhood Hits	80	Shared Neighborhood Hits	32
SwissProt Accessions	P35680	Gene names	TCF2, HNF1B
Domain Architecture
Description	Hepatocyte nuclear factor 1-beta (HNF-1beta) (HNF-1B) (Variant hepatic nuclear factor 1) (VHNF1) (Homeoprotein LFB3) (Transcription factor 2) (TCF-2).

IF4G1_HUMAN
θ value	6.88961 (rank : 405)	NC score	0.000724 (rank : 468)
Query Neighborhood Hits	434	Target Neighborhood Hits	347	Shared Neighborhood Hits	16
SwissProt Accessions	Q04637, O43177, O95066, Q5HYG0, Q6ZN21, Q8N102	Gene names	EIF4G1, EIF4G, EIF4GI
Domain Architecture
Description	Eukaryotic translation initiation factor 4 gamma 1 (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220).

INP5E_HUMAN
θ value	6.88961 (rank : 406)	NC score	0.011312 (rank : 424)
Query Neighborhood Hits	434	Target Neighborhood Hits	201	Shared Neighborhood Hits	21
SwissProt Accessions	Q9NRR6, Q15734	Gene names	INPP5E
Domain Architecture
Description	72 kDa inositol polyphosphate 5-phosphatase (EC 3.1.3.36) (Phosphatidylinositol-4,5-bisphosphate 5-phosphatase) (Phosphatidylinositol polyphosphate 5-phosphatase type IV).

JHD2C_MOUSE
θ value	6.88961 (rank : 407)	NC score	0.003829 (rank : 453)
Query Neighborhood Hits	434	Target Neighborhood Hits	297	Shared Neighborhood Hits	14
SwissProt Accessions	Q69ZK6, Q6NV48, Q8BUF5, Q8C4I5, Q8C5Q9	Gene names	Jmjd1c, Jhdm2c, Kiaa1380
Domain Architecture	No domain graphic available
Description	Probable JmjC domain-containing histone demethylation protein 2C (EC 1.14.11.-) (Jumonji domain-containing protein 1C).

K0423_HUMAN
θ value	6.88961 (rank : 408)	NC score	0.003960 (rank : 452)
Query Neighborhood Hits	434	Target Neighborhood Hits	171	Shared Neighborhood Hits	8
SwissProt Accessions	Q9Y4F4, Q68D66, Q6PG27	Gene names	KIAA0423
Domain Architecture	No domain graphic available
Description	Protein KIAA0423.

KI2S4_HUMAN
θ value	6.88961 (rank : 409)	NC score	-0.001269 (rank : 475)
Query Neighborhood Hits	434	Target Neighborhood Hits	49	Shared Neighborhood Hits	2
SwissProt Accessions	P43632	Gene names	KIR2DS4, CD158I, KKA3, NKAT8
Domain Architecture	No domain graphic available
Description	Killer cell immunoglobulin-like receptor 2DS4 precursor (MHC class I NK cell receptor) (Natural killer-associated transcript 8) (NKAT-8) (P58 natural killer cell receptor clone CL-39) (p58 NK receptor) (CL- 17) (CD158i antigen).

MAGC1_HUMAN
θ value	6.88961 (rank : 410)	NC score	0.000968 (rank : 464)
Query Neighborhood Hits	434	Target Neighborhood Hits	431	Shared Neighborhood Hits	25
SwissProt Accessions	O60732, O75451, Q8TCV4	Gene names	MAGEC1
Domain Architecture
Description	Melanoma-associated antigen C1 (MAGE-C1 antigen) (Cancer-testis antigen CT7).

NDF1_HUMAN
θ value	6.88961 (rank : 411)	NC score	0.010690 (rank : 426)
Query Neighborhood Hits	434	Target Neighborhood Hits	186	Shared Neighborhood Hits	10
SwissProt Accessions	Q13562, O00343, Q13340, Q5U095, Q96TH0, Q99455, Q9UEC8	Gene names	NEUROD1, NEUROD
Domain Architecture
Description	Neurogenic differentiation factor 1 (NeuroD1) (NeuroD).

NDF1_MOUSE
θ value	6.88961 (rank : 412)	NC score	0.010991 (rank : 425)
Query Neighborhood Hits	434	Target Neighborhood Hits	209	Shared Neighborhood Hits	12
SwissProt Accessions	Q60867, Q545N9, Q60897	Gene names	Neurod1, Neurod
Domain Architecture
Description	Neurogenic differentiation factor 1 (NeuroD1).

PBX3_HUMAN
θ value	6.88961 (rank : 413)	NC score	0.343412 (rank : 297)
Query Neighborhood Hits	434	Target Neighborhood Hits	306	Shared Neighborhood Hits	283
SwissProt Accessions	P40426, Q96PF9, Q96PG0	Gene names	PBX3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX3_MOUSE
θ value	6.88961 (rank : 414)	NC score	0.343450 (rank : 296)
Query Neighborhood Hits	434	Target Neighborhood Hits	306	Shared Neighborhood Hits	283
SwissProt Accessions	O35317, Q925W2	Gene names	Pbx3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PDC6I_HUMAN
θ value	6.88961 (rank : 415)	NC score	0.009013 (rank : 430)
Query Neighborhood Hits	434	Target Neighborhood Hits	278	Shared Neighborhood Hits	19
SwissProt Accessions	Q8WUM4, Q9BX86, Q9NUN0, Q9P2H2, Q9UKL5	Gene names	PDCD6IP, AIP1, ALIX, KIAA1375
Domain Architecture
Description	Programmed cell death 6-interacting protein (PDCD6-interacting protein) (ALG-2-interacting protein 1) (Hp95).

PRP1_HUMAN
θ value	6.88961 (rank : 416)	NC score	0.007526 (rank : 436)
Query Neighborhood Hits	434	Target Neighborhood Hits	385	Shared Neighborhood Hits	23
SwissProt Accessions	P04280, Q08805, Q15186, Q15187, Q15214, Q15215, Q16038	Gene names	PRB1
Domain Architecture	No domain graphic available
Description	Basic salivary proline-rich protein 1 precursor (Salivary proline-rich protein) [Contains: Basic peptide IB-6; Peptide P-H].

PTC1_MOUSE
θ value	6.88961 (rank : 417)	NC score	0.006563 (rank : 439)
Query Neighborhood Hits	434	Target Neighborhood Hits	43	Shared Neighborhood Hits	6
SwissProt Accessions	Q61115	Gene names	Ptch1, Ptch
Domain Architecture
Description	Protein patched homolog 1 (PTC1) (PTC).

TF7L1_HUMAN
θ value	6.88961 (rank : 418)	NC score	0.006140 (rank : 441)
Query Neighborhood Hits	434	Target Neighborhood Hits	129	Shared Neighborhood Hits	5
SwissProt Accessions	Q9HCS4, Q53R97, Q6PD70, Q9NP00	Gene names	TCF7L1, TCF3
Domain Architecture
Description	Transcription factor 7-like 1 (HMG box transcription factor 3) (TCF- 3).

TRIPC_HUMAN
θ value	6.88961 (rank : 419)	NC score	0.003701 (rank : 455)
Query Neighborhood Hits	434	Target Neighborhood Hits	319	Shared Neighborhood Hits	16
SwissProt Accessions	Q14669, Q15644	Gene names	TRIP12, KIAA0045
Domain Architecture
Description	Thyroid receptor-interacting protein 12 (TRIP12).

TTBK2_MOUSE
θ value	6.88961 (rank : 420)	NC score	-0.011181 (rank : 483)
Query Neighborhood Hits	434	Target Neighborhood Hits	811	Shared Neighborhood Hits	10
SwissProt Accessions	Q3UVR3, Q3TSR6, Q3UFW0, Q571D1, Q8BKA4, Q924U8	Gene names	Ttbk2, Kiaa0847, Ttbk1
Domain Architecture	No domain graphic available
Description	Tau-tubulin kinase 2.

WASF4_HUMAN
θ value	6.88961 (rank : 421)	NC score	0.010634 (rank : 428)
Query Neighborhood Hits	434	Target Neighborhood Hits	282	Shared Neighborhood Hits	25
SwissProt Accessions	Q8IV90	Gene names	WASF4, SCAR2
Domain Architecture	No domain graphic available
Description	Wiskott-Aldrich syndrome protein family member 4 (WASP-family protein member 4).

ZIC5_HUMAN
θ value	6.88961 (rank : 422)	NC score	-0.013726 (rank : 484)
Query Neighborhood Hits	434	Target Neighborhood Hits	774	Shared Neighborhood Hits	15
SwissProt Accessions	Q96T25	Gene names	ZIC5
Domain Architecture	No domain graphic available
Description	Zinc finger protein ZIC 5 (Zinc finger protein of the cerebellum 5).

ACINU_MOUSE
θ value	8.99809 (rank : 423)	NC score	-0.000985 (rank : 474)
Query Neighborhood Hits	434	Target Neighborhood Hits	712	Shared Neighborhood Hits	22
SwissProt Accessions	Q9JIX8, Q9CSN7, Q9CSR9, Q9CSX7, Q9R046, Q9R047	Gene names	Acin1, Acinus
Domain Architecture
Description	Apoptotic chromatin condensation inducer in the nucleus (Acinus).

BCAR1_MOUSE
θ value	8.99809 (rank : 424)	NC score	0.005617 (rank : 445)
Query Neighborhood Hits	434	Target Neighborhood Hits	438	Shared Neighborhood Hits	35
SwissProt Accessions	Q61140, Q60869	Gene names	Bcar1, Cas, Crkas
Domain Architecture
Description	Breast cancer anti-estrogen resistance protein 1 (CRK-associated substrate) (p130cas).

FOXC2_MOUSE
θ value	8.99809 (rank : 425)	NC score	-0.001588 (rank : 477)
Query Neighborhood Hits	434	Target Neighborhood Hits	124	Shared Neighborhood Hits	7
SwissProt Accessions	Q61850, P97948, Q63869, Q8C694	Gene names	Foxc2, Fkh14, Fkhl14, Mfh1
Domain Architecture
Description	Forkhead box protein C2 (Forkhead-related protein FKHL14) (Mesenchyme fork head protein 1) (MFH-1 protein) (Transcription factor FKH-14).

HNF1B_MOUSE
θ value	8.99809 (rank : 426)	NC score	0.044328 (rank : 395)
Query Neighborhood Hits	434	Target Neighborhood Hits	78	Shared Neighborhood Hits	32
SwissProt Accessions	P27889, Q8R162, Q9CS26, Q9R1W1, Q9R1W2, Q9WTL5, Q9WTL6	Gene names	Tcf2, Hnf-1b, Hnf1b
Domain Architecture
Description	Hepatocyte nuclear factor 1-beta (HNF-1beta) (HNF-1B) (Variant hepatic nuclear factor 1) (VHNF1) (Homeoprotein LFB3).

NMDE3_MOUSE
θ value	8.99809 (rank : 427)	NC score	-0.000805 (rank : 473)
Query Neighborhood Hits	434	Target Neighborhood Hits	86	Shared Neighborhood Hits	5
SwissProt Accessions	Q01098	Gene names	Grin2c
Domain Architecture
Description	Glutamate [NMDA] receptor subunit epsilon 3 precursor (N-methyl D- aspartate receptor subtype 2C) (NR2C) (NMDAR2C).

PTC1_HUMAN
θ value	8.99809 (rank : 428)	NC score	0.005709 (rank : 444)
Query Neighborhood Hits	434	Target Neighborhood Hits	37	Shared Neighborhood Hits	5
SwissProt Accessions	Q13635, Q13463, Q5VZC0	Gene names	PTCH1, PTCH
Domain Architecture
Description	Protein patched homolog 1 (PTC1) (PTC).

RILP_HUMAN
θ value	8.99809 (rank : 429)	NC score	0.000108 (rank : 471)
Query Neighborhood Hits	434	Target Neighborhood Hits	249	Shared Neighborhood Hits	7
SwissProt Accessions	Q96NA2, Q71RE6, Q9BSL3, Q9BYS3	Gene names	RILP
Domain Architecture	No domain graphic available
Description	Rab-interacting lysosomal protein.

SEBP2_HUMAN
θ value	8.99809 (rank : 430)	NC score	0.003585 (rank : 456)
Query Neighborhood Hits	434	Target Neighborhood Hits	88	Shared Neighborhood Hits	4
SwissProt Accessions	Q96T21, Q8IYC0	Gene names	SECISBP2, SBP2
Domain Architecture
Description	SECIS-binding protein 2 (Selenocysteine insertion sequence-binding protein 2).

SKI_MOUSE
θ value	8.99809 (rank : 431)	NC score	-0.001432 (rank : 476)
Query Neighborhood Hits	434	Target Neighborhood Hits	423	Shared Neighborhood Hits	9
SwissProt Accessions	Q60698, Q8VIL5	Gene names	Ski
Domain Architecture	No domain graphic available
Description	Ski oncogene (C-ski).

TTLL7_HUMAN
θ value	8.99809 (rank : 432)	NC score	0.001168 (rank : 462)
Query Neighborhood Hits	434	Target Neighborhood Hits	95	Shared Neighborhood Hits	4
SwissProt Accessions	Q6ZT98, Q5TAX8, Q5TAX9, Q6P990, Q86YS1, Q9H5U4	Gene names	TTLL7
Domain Architecture	No domain graphic available
Description	Tubulin--tyrosine ligase-like protein 7 (Protein NYD-SP30).

WASF3_HUMAN
θ value	8.99809 (rank : 433)	NC score	0.005080 (rank : 448)
Query Neighborhood Hits	434	Target Neighborhood Hits	204	Shared Neighborhood Hits	21
SwissProt Accessions	Q9UPY6, O94974	Gene names	WASF3, KIAA0900, SCAR3, WAVE3
Domain Architecture
Description	Wiskott-Aldrich syndrome protein family member 3 (WASP-family protein member 3) (Protein WAVE-3) (Verprolin homology domain-containing protein 3).

XRN1_MOUSE
θ value	8.99809 (rank : 434)	NC score	0.002694 (rank : 459)
Query Neighborhood Hits	434	Target Neighborhood Hits	64	Shared Neighborhood Hits	3
SwissProt Accessions	P97789, O35651, P97790, Q3TE44, Q3TRE9, Q3UQL5	Gene names	Xrn1, Dhm2, Exo, Sep1
Domain Architecture	No domain graphic available
Description	5'-3' exoribonuclease 1 (EC 3.1.11.-) (mXRN1) (Strand-exchange protein 1 homolog) (Protein Dhm2).

ABLM1_HUMAN
θ value	θ > 10 (rank : 435)	NC score	0.050205 (rank : 393)
Query Neighborhood Hits	434	Target Neighborhood Hits	387	Shared Neighborhood Hits	37
SwissProt Accessions	O14639, Q15039, Q68CQ9, Q9BUP1	Gene names	ABLIM1, ABLIM, KIAA0059
Domain Architecture	No domain graphic available
Description	Actin-binding LIM protein 1 (Actin-binding LIM protein family member 1) (abLIM-1) (Actin-binding double-zinc-finger protein) (LIMAB1) (Limatin).

ABLM1_MOUSE
θ value	θ > 10 (rank : 436)	NC score	0.050620 (rank : 392)
Query Neighborhood Hits	434	Target Neighborhood Hits	356	Shared Neighborhood Hits	30
SwissProt Accessions	Q8K4G5, Q80U86, Q8BIR9, Q8K4G3, Q8K4G4	Gene names	Ablim1, Ablim, Kiaa0059
Domain Architecture	No domain graphic available
Description	Actin-binding LIM protein 1 (Actin-binding LIM protein family member 1) (abLIM-1).

ABLM3_HUMAN
θ value	θ > 10 (rank : 437)	NC score	0.051523 (rank : 389)
Query Neighborhood Hits	434	Target Neighborhood Hits	293	Shared Neighborhood Hits	31
SwissProt Accessions	O94929, Q658S1, Q68CI5, Q9BV32	Gene names	ABLIM3, KIAA0843
Domain Architecture	No domain graphic available
Description	Actin-binding LIM protein 3 (Actin-binding LIM protein family member 3) (abLIM-3).

ABLM3_MOUSE
θ value	θ > 10 (rank : 438)	NC score	0.051242 (rank : 391)
Query Neighborhood Hits	434	Target Neighborhood Hits	294	Shared Neighborhood Hits	28
SwissProt Accessions	Q69ZX8, Q52KR1, Q6PAI7	Gene names	Ablim3, Kiaa0843
Domain Architecture	No domain graphic available
Description	Actin-binding LIM protein 3 (Actin-binding LIM protein family member 3) (abLIM-3).

HNF6_HUMAN
θ value	θ > 10 (rank : 439)	NC score	0.089893 (rank : 362)
Query Neighborhood Hits	434	Target Neighborhood Hits	127	Shared Neighborhood Hits	83
SwissProt Accessions	Q9UBC0, Q99744, Q9UMR6	Gene names	ONECUT1, HNF6, HNF6A
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

HNF6_MOUSE
θ value	θ > 10 (rank : 440)	NC score	0.093963 (rank : 356)
Query Neighborhood Hits	434	Target Neighborhood Hits	124	Shared Neighborhood Hits	85
SwissProt Accessions	O08755	Gene names	Onecut1, Hnf6, Hnf6a
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

HOP_HUMAN
θ value	θ > 10 (rank : 441)	NC score	0.284186 (rank : 320)
Query Neighborhood Hits	434	Target Neighborhood Hits	107	Shared Neighborhood Hits	98
SwissProt Accessions	Q9BPY8, Q8N0V6, Q96CI1	Gene names	HOP, HOD, LAGY, NECC1, OB1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Lung cancer-associated Y protein) (Odd homeobox protein 1) (Not expressed in choriocarcinoma protein 1).

HOP_MOUSE
θ value	θ > 10 (rank : 442)	NC score	0.277671 (rank : 322)
Query Neighborhood Hits	434	Target Neighborhood Hits	102	Shared Neighborhood Hits	92
SwissProt Accessions	Q8R1H0, Q8C1N5, Q8CJ22	Gene names	Hop, Hod, Ob1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Homeobox-only protein) (Odd homeobox protein 1) (mOB1).

LMO3_HUMAN
θ value	θ > 10 (rank : 443)	NC score	0.097707 (rank : 353)
Query Neighborhood Hits	434	Target Neighborhood Hits	111	Shared Neighborhood Hits	26
SwissProt Accessions	Q8TAP4, Q8N974, Q9UDD5	Gene names	LMO3, RBTN3, RHOM3
Domain Architecture
Description	LIM-only protein 3 (Neuronal-specific transcription factor DAT1) (Rhombotin-3).

LMO3_MOUSE
θ value	θ > 10 (rank : 444)	NC score	0.097707 (rank : 354)
Query Neighborhood Hits	434	Target Neighborhood Hits	111	Shared Neighborhood Hits	26
SwissProt Accessions	Q8BZL8	Gene names	Lmo3
Domain Architecture
Description	LIM-only protein 3 (Neuronal-specific transcription factor DAT1).

LMO4_HUMAN
θ value	θ > 10 (rank : 445)	NC score	0.100640 (rank : 348)
Query Neighborhood Hits	434	Target Neighborhood Hits	111	Shared Neighborhood Hits	26
SwissProt Accessions	P61968, O00158, O88894	Gene names	LMO4
Domain Architecture
Description	LIM domain transcription factor LMO4 (LIM domain only protein 4) (LMO- 4) (Breast tumor autoantigen).

LMO4_MOUSE
θ value	θ > 10 (rank : 446)	NC score	0.100640 (rank : 349)
Query Neighborhood Hits	434	Target Neighborhood Hits	111	Shared Neighborhood Hits	26
SwissProt Accessions	P61969, O00158, O88894	Gene names	Lmo4
Domain Architecture
Description	LIM domain transcription factor LMO4 (LIM domain only protein 4) (LMO- 4) (Breast tumor autoantigen).

LPP_HUMAN
θ value	θ > 10 (rank : 447)	NC score	0.052015 (rank : 388)
Query Neighborhood Hits	434	Target Neighborhood Hits	775	Shared Neighborhood Hits	82
SwissProt Accessions	Q93052, Q8NFX5	Gene names	LPP
Domain Architecture	No domain graphic available
Description	Lipoma-preferred partner (LIM domain-containing preferred translocation partner in lipoma).

MEIS1_HUMAN
θ value	θ > 10 (rank : 448)	NC score	0.086263 (rank : 364)
Query Neighborhood Hits	434	Target Neighborhood Hits	115	Shared Neighborhood Hits	97
SwissProt Accessions	O00470	Gene names	MEIS1
Domain Architecture
Description	Homeobox protein Meis1.

MEIS1_MOUSE
θ value	θ > 10 (rank : 449)	NC score	0.086258 (rank : 365)
Query Neighborhood Hits	434	Target Neighborhood Hits	115	Shared Neighborhood Hits	97
SwissProt Accessions	Q60954, Q5SVC8, Q60955, Q8CIL0	Gene names	Meis1
Domain Architecture
Description	Homeobox protein Meis1 (Myeloid ecotropic viral integration site 1).

MEIS3_HUMAN
θ value	θ > 10 (rank : 450)	NC score	0.091563 (rank : 361)
Query Neighborhood Hits	434	Target Neighborhood Hits	118	Shared Neighborhood Hits	95
SwissProt Accessions	Q99687, Q6NT73, Q8TC66, Q9NPW2	Gene names	MEIS3, MRG2
Domain Architecture	No domain graphic available
Description	Homeobox protein Meis3 (Meis1-related protein 2).

MEIS3_MOUSE
θ value	θ > 10 (rank : 451)	NC score	0.088228 (rank : 363)
Query Neighborhood Hits	434	Target Neighborhood Hits	118	Shared Neighborhood Hits	94
SwissProt Accessions	P97368, Q99L81	Gene names	Meis3, Mrg2
Domain Architecture
Description	Homeobox protein Meis3 (Meis1-related protein 2).

ONEC2_HUMAN
θ value	θ > 10 (rank : 452)	NC score	0.082926 (rank : 368)
Query Neighborhood Hits	434	Target Neighborhood Hits	115	Shared Neighborhood Hits	77
SwissProt Accessions	O95948	Gene names	ONECUT2
Domain Architecture
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

ONEC2_MOUSE
θ value	θ > 10 (rank : 453)	NC score	0.080160 (rank : 369)
Query Neighborhood Hits	434	Target Neighborhood Hits	123	Shared Neighborhood Hits	77
SwissProt Accessions	Q6XBJ3	Gene names	Onecut2, Oc2
Domain Architecture	No domain graphic available
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

PAX1_HUMAN
θ value	θ > 10 (rank : 454)	NC score	0.072814 (rank : 375)
Query Neighborhood Hits	434	Target Neighborhood Hits	72	Shared Neighborhood Hits	15
SwissProt Accessions	P15863, Q642X9, Q6NTC0, Q9Y558	Gene names	PAX1, HUP48
Domain Architecture
Description	Paired box protein Pax-1 (HUP48).

PAX1_MOUSE
θ value	θ > 10 (rank : 455)	NC score	0.073658 (rank : 374)
Query Neighborhood Hits	434	Target Neighborhood Hits	69	Shared Neighborhood Hits	17
SwissProt Accessions	P09084, Q9R2B1	Gene names	Pax1, Pax-1
Domain Architecture
Description	Paired box protein Pax-1.

PAX2_HUMAN
θ value	θ > 10 (rank : 456)	NC score	0.111907 (rank : 343)
Query Neighborhood Hits	434	Target Neighborhood Hits	84	Shared Neighborhood Hits	55
SwissProt Accessions	Q02962, Q15105, Q15110, Q15837	Gene names	PAX2
Domain Architecture
Description	Paired box protein Pax-2.

PAX2_MOUSE
θ value	θ > 10 (rank : 457)	NC score	0.112459 (rank : 342)
Query Neighborhood Hits	434	Target Neighborhood Hits	86	Shared Neighborhood Hits	54
SwissProt Accessions	P32114	Gene names	Pax2, Pax-2
Domain Architecture
Description	Paired box protein Pax-2.

PAX5_HUMAN
θ value	θ > 10 (rank : 458)	NC score	0.101439 (rank : 345)
Query Neighborhood Hits	434	Target Neighborhood Hits	106	Shared Neighborhood Hits	53
SwissProt Accessions	Q02548, O75933	Gene names	PAX5
Domain Architecture
Description	Paired box protein Pax-5 (B-cell-specific transcription factor) (BSAP).

PAX5_MOUSE
θ value	θ > 10 (rank : 459)	NC score	0.101139 (rank : 346)
Query Neighborhood Hits	434	Target Neighborhood Hits	106	Shared Neighborhood Hits	53
SwissProt Accessions	Q02650	Gene names	Pax5, Pax-5
Domain Architecture
Description	Paired box protein Pax-5 (B-cell-specific transcription factor) (BSAP).

PAX8_HUMAN
θ value	θ > 10 (rank : 460)	NC score	0.083540 (rank : 367)
Query Neighborhood Hits	434	Target Neighborhood Hits	56	Shared Neighborhood Hits	22
SwissProt Accessions	Q06710, Q09155, Q16337, Q16338, Q16339, Q96J49	Gene names	PAX8
Domain Architecture
Description	Paired box protein Pax-8.

PAX8_MOUSE
θ value	θ > 10 (rank : 461)	NC score	0.093428 (rank : 359)
Query Neighborhood Hits	434	Target Neighborhood Hits	62	Shared Neighborhood Hits	29
SwissProt Accessions	Q00288, P97342	Gene names	Pax8, Pax-8
Domain Architecture
Description	Paired box protein Pax-8.

PAX9_HUMAN
θ value	θ > 10 (rank : 462)	NC score	0.077799 (rank : 370)
Query Neighborhood Hits	434	Target Neighborhood Hits	92	Shared Neighborhood Hits	18
SwissProt Accessions	P55771, Q99582, Q9UQR4	Gene names	PAX9
Domain Architecture
Description	Paired box protein Pax-9.

PAX9_MOUSE
θ value	θ > 10 (rank : 463)	NC score	0.077785 (rank : 371)
Query Neighborhood Hits	434	Target Neighborhood Hits	67	Shared Neighborhood Hits	15
SwissProt Accessions	P47242	Gene names	Pax9, Pax-9
Domain Architecture
Description	Paired box protein Pax-9.

PDLI7_HUMAN
θ value	θ > 10 (rank : 464)	NC score	0.053641 (rank : 387)
Query Neighborhood Hits	434	Target Neighborhood Hits	547	Shared Neighborhood Hits	58
SwissProt Accessions	Q9NR12, Q14250, Q5XG82, Q6NVZ5, Q96C91, Q9BXB8, Q9BXB9	Gene names	PDLIM7, ENIGMA
Domain Architecture	No domain graphic available
Description	PDZ and LIM domain protein 7 (LIM mineralization protein) (LMP) (Protein enigma).

PDLI7_MOUSE
θ value	θ > 10 (rank : 465)	NC score	0.051403 (rank : 390)
Query Neighborhood Hits	434	Target Neighborhood Hits	279	Shared Neighborhood Hits	32
SwissProt Accessions	Q3TJD7, Q80ZY6, Q810S3, Q8C1S4, Q9CRA1	Gene names	Pdlim7, Enigma
Domain Architecture	No domain graphic available
Description	PDZ and LIM domain protein 7 (LIM mineralization protein) (LMP) (Protein enigma).

PKNX1_HUMAN
θ value	θ > 10 (rank : 466)	NC score	0.068257 (rank : 379)
Query Neighborhood Hits	434	Target Neighborhood Hits	101	Shared Neighborhood Hits	78
SwissProt Accessions	P55347, O00528, Q8IWT7	Gene names	PKNOX1, PREP1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1) (Homeobox protein PREP-1).

PKNX1_MOUSE
θ value	θ > 10 (rank : 467)	NC score	0.068851 (rank : 377)
Query Neighborhood Hits	434	Target Neighborhood Hits	103	Shared Neighborhood Hits	79
SwissProt Accessions	O70477	Gene names	Pknox1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1).

PKNX2_HUMAN
θ value	θ > 10 (rank : 468)	NC score	0.067080 (rank : 381)
Query Neighborhood Hits	434	Target Neighborhood Hits	133	Shared Neighborhood Hits	85
SwissProt Accessions	Q96KN3, Q63HL6, Q86XD1	Gene names	PKNOX2, PREP2
Domain Architecture
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

PKNX2_MOUSE
θ value	θ > 10 (rank : 469)	NC score	0.069079 (rank : 376)
Query Neighborhood Hits	434	Target Neighborhood Hits	197	Shared Neighborhood Hits	94
SwissProt Accessions	Q8BG99, Q8R4B0	Gene names	Pknox2, Prep2
Domain Architecture	No domain graphic available
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

PO5FL_HUMAN
θ value	θ > 10 (rank : 470)	NC score	0.188810 (rank : 334)
Query Neighborhood Hits	434	Target Neighborhood Hits	214	Shared Neighborhood Hits	183
SwissProt Accessions	Q06416, Q9BZV9	Gene names	POU5F1P1, OTF3C, POU5FLC8
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 1 (Octamer- binding protein 3-like).

PO5FM_HUMAN
θ value	θ > 10 (rank : 471)	NC score	0.190118 (rank : 333)
Query Neighborhood Hits	434	Target Neighborhood Hits	212	Shared Neighborhood Hits	186
SwissProt Accessions	Q9BZV7	Gene names	POU5F1P1, POU5FLC20
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 2.

PO5FN_HUMAN
θ value	θ > 10 (rank : 472)	NC score	0.132807 (rank : 341)
Query Neighborhood Hits	434	Target Neighborhood Hits	134	Shared Neighborhood Hits	115
SwissProt Accessions	Q9BZW0	Gene names	POU5FLC1
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 3.

RBTN1_HUMAN
θ value	θ > 10 (rank : 473)	NC score	0.097711 (rank : 352)
Query Neighborhood Hits	434	Target Neighborhood Hits	110	Shared Neighborhood Hits	26
SwissProt Accessions	P25800, Q4VBC5	Gene names	LMO1, RBTN1, RHOM1, TTG1
Domain Architecture
Description	Rhombotin-1 (Cysteine-rich protein TTG-1) (T-cell translocation protein 1) (LIM-only protein 1).

RBTN1_MOUSE
θ value	θ > 10 (rank : 474)	NC score	0.097688 (rank : 355)
Query Neighborhood Hits	434	Target Neighborhood Hits	109	Shared Neighborhood Hits	25
SwissProt Accessions	Q924W9	Gene names	Lmo1, Rbtn1, Rhom1, Ttg1
Domain Architecture	No domain graphic available
Description	Rhombotin-1 (Cysteine-rich protein TTG-1) (LIM-only protein 1).

RBTN2_HUMAN
θ value	θ > 10 (rank : 475)	NC score	0.093559 (rank : 358)
Query Neighborhood Hits	434	Target Neighborhood Hits	114	Shared Neighborhood Hits	26
SwissProt Accessions	P25791, Q9HD58	Gene names	LMO2, RBTN2, RHOM2, TTG2
Domain Architecture
Description	Rhombotin-2 (Cysteine-rich protein TTG-2) (T-cell translocation protein 2) (LIM-only protein 2).

RBTN2_MOUSE
θ value	θ > 10 (rank : 476)	NC score	0.093562 (rank : 357)
Query Neighborhood Hits	434	Target Neighborhood Hits	114	Shared Neighborhood Hits	26
SwissProt Accessions	P25801	Gene names	Lmo2, Rbtn-2, Rbtn2, Rhom-2
Domain Architecture
Description	Rhombotin-2 (Cysteine-rich protein TTG-2) (T-cell translocation protein 2) (LIM-only protein 2).

SPRM1_HUMAN
θ value	θ > 10 (rank : 477)	NC score	0.104764 (rank : 344)
Query Neighborhood Hits	434	Target Neighborhood Hits	72	Shared Neighborhood Hits	61
SwissProt Accessions	Q8N7G0, Q8N748	Gene names	SPRM1
Domain Architecture
Description	Sperm 1 POU-domain transcription factor (SPRM-1).

SPRM1_MOUSE
θ value	θ > 10 (rank : 478)	NC score	0.098186 (rank : 350)
Query Neighborhood Hits	434	Target Neighborhood Hits	73	Shared Neighborhood Hits	60
SwissProt Accessions	Q9DAC9	Gene names	Sprm1
Domain Architecture
Description	Sperm 1 POU-domain transcription factor (SPRM-1).

TF2LX_HUMAN
θ value	θ > 10 (rank : 479)	NC score	0.084515 (rank : 366)
Query Neighborhood Hits	434	Target Neighborhood Hits	108	Shared Neighborhood Hits	74
SwissProt Accessions	Q8IUE1	Gene names	TGIF2LX, TGIFLX
Domain Architecture
Description	Homeobox protein TGIF2LX (TGFB-induced factor 2-like protein, X- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the X).

TF2LY_HUMAN
θ value	θ > 10 (rank : 480)	NC score	0.075599 (rank : 372)
Query Neighborhood Hits	434	Target Neighborhood Hits	90	Shared Neighborhood Hits	67
SwissProt Accessions	Q8IUE0	Gene names	TGIF2LY, TGIFLY
Domain Architecture
Description	Homeobox protein TGIF2LY (TGFB-induced factor 2-like protein, Y- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the Y).

TGIF2_HUMAN
θ value	θ > 10 (rank : 481)	NC score	0.064500 (rank : 382)
Query Neighborhood Hits	434	Target Neighborhood Hits	94	Shared Neighborhood Hits	60
SwissProt Accessions	Q9GZN2	Gene names	TGIF2
Domain Architecture
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

TGIF2_MOUSE
θ value	θ > 10 (rank : 482)	NC score	0.074224 (rank : 373)
Query Neighborhood Hits	434	Target Neighborhood Hits	127	Shared Neighborhood Hits	69
SwissProt Accessions	Q8C0Y1	Gene names	Tgif2
Domain Architecture	No domain graphic available
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

TGIF_HUMAN
θ value	θ > 10 (rank : 483)	NC score	0.068770 (rank : 378)
Query Neighborhood Hits	434	Target Neighborhood Hits	109	Shared Neighborhood Hits	62
SwissProt Accessions	Q15583, Q6ICR0, Q8N5X9, Q9NRS0	Gene names	TGIF
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

TGIF_MOUSE
θ value	θ > 10 (rank : 484)	NC score	0.067759 (rank : 380)
Query Neighborhood Hits	434	Target Neighborhood Hits	125	Shared Neighborhood Hits	64
SwissProt Accessions	P70284, Q921F9, Q99JS3	Gene names	Tgif
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

TRIP6_HUMAN
θ value	θ > 10 (rank : 485)	NC score	0.053917 (rank : 386)
Query Neighborhood Hits	434	Target Neighborhood Hits	228	Shared Neighborhood Hits	37
SwissProt Accessions	Q15654, O15170, O15275, Q9BTB2, Q9UNT4	Gene names	TRIP6, OIP1
Domain Architecture
Description	Thyroid receptor-interacting protein 6 (TRIP6) (OPA-interacting protein 1) (Zyxin-related protein 1) (ZRP-1).

Hits sorted by NC score

DLX5_MOUSE
NC score	0.999962 (rank : 1)	θ value	2.17943e-171 (rank : 1)
Query Neighborhood Hits	434	Target Neighborhood Hits	434	Shared Neighborhood Hits	434
SwissProt Accessions	P70396, O54876, O54877, O54878, Q9JJ45	Gene names	Dlx5
Domain Architecture
Description	Homeobox protein DLX-5.

DLX5_HUMAN
NC score	0.997429 (rank : 2)	θ value	5.19945e-165 (rank : 2)
Query Neighborhood Hits	434	Target Neighborhood Hits	405	Shared Neighborhood Hits	394
SwissProt Accessions	P56178, Q9UPL1	Gene names	DLX5
Domain Architecture
Description	Homeobox protein DLX-5.

DLX3_HUMAN
NC score	0.981768 (rank : 3)	θ value	2.24614e-67 (rank : 3)
Query Neighborhood Hits	434	Target Neighborhood Hits	369	Shared Neighborhood Hits	338
SwissProt Accessions	O60479	Gene names	DLX3
Domain Architecture
Description	Homeobox protein DLX-3.

DLX2_HUMAN
NC score	0.981751 (rank : 4)	θ value	6.55044e-59 (rank : 5)
Query Neighborhood Hits	434	Target Neighborhood Hits	355	Shared Neighborhood Hits	335
SwissProt Accessions	Q07687	Gene names	DLX2
Domain Architecture
Description	Homeobox protein DLX-2.

DLX3_MOUSE
NC score	0.981611 (rank : 5)	θ value	2.4834e-66 (rank : 4)
Query Neighborhood Hits	434	Target Neighborhood Hits	367	Shared Neighborhood Hits	336
SwissProt Accessions	Q64205	Gene names	Dlx3
Domain Architecture
Description	Homeobox protein DLX-3.

DLX2_MOUSE
NC score	0.981207 (rank : 6)	θ value	4.24587e-58 (rank : 6)
Query Neighborhood Hits	434	Target Neighborhood Hits	352	Shared Neighborhood Hits	334
SwissProt Accessions	P40764	Gene names	Dlx2, Tes-1, Tes1
Domain Architecture
Description	Homeobox protein DLX-2 (Homeobox protein TES-1).

DLX6_HUMAN
NC score	0.972919 (rank : 7)	θ value	2.26708e-35 (rank : 9)
Query Neighborhood Hits	434	Target Neighborhood Hits	341	Shared Neighborhood Hits	332
SwissProt Accessions	P56179, Q3ZAR6, Q9UPL2	Gene names	DLX6
Domain Architecture
Description	Homeobox protein DLX-6.

DLX1_HUMAN
NC score	0.967592 (rank : 8)	θ value	4.568e-36 (rank : 8)
Query Neighborhood Hits	434	Target Neighborhood Hits	343	Shared Neighborhood Hits	333
SwissProt Accessions	P56177, Q53ZU4, Q8IYB2	Gene names	DLX1
Domain Architecture
Description	Homeobox protein DLX-1.

DLX1_MOUSE
NC score	0.967530 (rank : 9)	θ value	1.57e-36 (rank : 7)
Query Neighborhood Hits	434	Target Neighborhood Hits	343	Shared Neighborhood Hits	333
SwissProt Accessions	Q64317	Gene names	Dlx1
Domain Architecture
Description	Homeobox protein DLX-1.

DLX4_HUMAN
NC score	0.954654 (rank : 10)	θ value	1.12775e-26 (rank : 11)
Query Neighborhood Hits	434	Target Neighborhood Hits	350	Shared Neighborhood Hits	323
SwissProt Accessions	Q92988, O60480, Q13265, Q6PJK0, Q9HBE0	Gene names	DLX4, BP1, DLX7, DLX8
Domain Architecture	No domain graphic available
Description	Homeobox protein DLX-4 (DLX-7) (DLX-8) (Beta protein 1).

DLX4_MOUSE
NC score	0.954250 (rank : 11)	θ value	2.27234e-27 (rank : 10)
Query Neighborhood Hits	434	Target Neighborhood Hits	352	Shared Neighborhood Hits	321
SwissProt Accessions	P70436, Q3UM51, Q8R4I3	Gene names	Dlx4, Dlx7
Domain Architecture
Description	Homeobox protein DLX-4 (DLX-7).

BSH_MOUSE
NC score	0.937047 (rank : 12)	θ value	1.52774e-15 (rank : 14)
Query Neighborhood Hits	434	Target Neighborhood Hits	349	Shared Neighborhood Hits	325
SwissProt Accessions	Q810B3	Gene names	Bsx
Domain Architecture	No domain graphic available
Description	Brain-specific homeobox protein homolog.

MSX3_MOUSE
NC score	0.931793 (rank : 13)	θ value	4.44505e-15 (rank : 19)
Query Neighborhood Hits	434	Target Neighborhood Hits	330	Shared Neighborhood Hits	317
SwissProt Accessions	P70354, P70246, Q03360, Q80W10	Gene names	Msx3, Msx-3
Domain Architecture
Description	Homeobox protein MSX-3.

MSX2_HUMAN
NC score	0.927661 (rank : 14)	θ value	1.02238e-19 (rank : 12)
Query Neighborhood Hits	434	Target Neighborhood Hits	337	Shared Neighborhood Hits	323
SwissProt Accessions	P35548	Gene names	MSX2, HOX8
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8).

BARX1_HUMAN
NC score	0.926063 (rank : 15)	θ value	3.76295e-14 (rank : 25)
Query Neighborhood Hits	434	Target Neighborhood Hits	326	Shared Neighborhood Hits	311
SwissProt Accessions	Q9HBU1	Gene names	BARX1
Domain Architecture
Description	Homeobox protein BarH-like 1.

MSX1_MOUSE
NC score	0.925403 (rank : 16)	θ value	4.44505e-15 (rank : 18)
Query Neighborhood Hits	434	Target Neighborhood Hits	322	Shared Neighborhood Hits	317
SwissProt Accessions	P13297	Gene names	Msx1, Hox7, Hox7.1
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7) (Hox- 7.1).

BARX2_MOUSE
NC score	0.925351 (rank : 17)	θ value	2.60593e-15 (rank : 16)
Query Neighborhood Hits	434	Target Neighborhood Hits	335	Shared Neighborhood Hits	317
SwissProt Accessions	O08686	Gene names	Barx2
Domain Architecture
Description	Homeobox protein BarH-like 2.

MSX2_MOUSE
NC score	0.924920 (rank : 18)	θ value	2.5182e-18 (rank : 13)
Query Neighborhood Hits	434	Target Neighborhood Hits	345	Shared Neighborhood Hits	322
SwissProt Accessions	Q03358, Q63856	Gene names	Msx2, Hox-8.1, Msx-2
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8.1).

BARX1_MOUSE
NC score	0.924752 (rank : 19)	θ value	3.76295e-14 (rank : 26)
Query Neighborhood Hits	434	Target Neighborhood Hits	324	Shared Neighborhood Hits	311
SwissProt Accessions	Q9ER42, O09066, P70159, Q9ERV2	Gene names	Barx1
Domain Architecture
Description	Homeobox protein BarH-like 1.

MSX1_HUMAN
NC score	0.924066 (rank : 20)	θ value	4.44505e-15 (rank : 17)
Query Neighborhood Hits	434	Target Neighborhood Hits	374	Shared Neighborhood Hits	321
SwissProt Accessions	P28360, Q96NY4	Gene names	MSX1, HOX7
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7).

NKX12_MOUSE
NC score	0.922313 (rank : 21)	θ value	6.00763e-12 (rank : 56)
Query Neighborhood Hits	434	Target Neighborhood Hits	332	Shared Neighborhood Hits	310
SwissProt Accessions	P42580, Q9JHF2, Q9JKW5, Q9JKW6, Q9JKW9, Q9JKX0, Q9JKX1	Gene names	Nkx1-2, Nkx1.1, Sax1
Domain Architecture
Description	NK1 transcription factor-related protein 2 (Homeobox protein SAX-1) (NKX-1.1).

BARX2_HUMAN
NC score	0.921952 (rank : 22)	θ value	2.60593e-15 (rank : 15)
Query Neighborhood Hits	434	Target Neighborhood Hits	387	Shared Neighborhood Hits	320
SwissProt Accessions	Q9UMQ3, O43518	Gene names	BARX2
Domain Architecture
Description	Homeobox protein BarH-like 2.

DBX1_MOUSE
NC score	0.920495 (rank : 23)	θ value	5.8054e-15 (rank : 20)
Query Neighborhood Hits	434	Target Neighborhood Hits	346	Shared Neighborhood Hits	319
SwissProt Accessions	P52950	Gene names	Dbx1, Dbx
Domain Architecture
Description	Homeobox protein DBX1.

HLXB9_HUMAN
NC score	0.914199 (rank : 24)	θ value	4.59992e-12 (rank : 50)
Query Neighborhood Hits	434	Target Neighborhood Hits	336	Shared Neighborhood Hits	324
SwissProt Accessions	P50219, Q9Y648	Gene names	HLXB9
Domain Architecture
Description	Homeobox protein HB9.

NKX28_MOUSE
NC score	0.913580 (rank : 25)	θ value	5.43371e-13 (rank : 37)
Query Neighborhood Hits	434	Target Neighborhood Hits	347	Shared Neighborhood Hits	334
SwissProt Accessions	O70584	Gene names	Nkx2-8, Nkx-2.9, Nkx2-9, Nkx2h
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H) (Homeobox protein Nkx-2.9).

HLXB9_MOUSE
NC score	0.912996 (rank : 26)	θ value	6.00763e-12 (rank : 53)
Query Neighborhood Hits	434	Target Neighborhood Hits	354	Shared Neighborhood Hits	327
SwissProt Accessions	Q9QZW9	Gene names	Hlxb9
Domain Architecture
Description	Homeobox protein HB9.

EMX1_HUMAN
NC score	0.912623 (rank : 27)	θ value	1.47974e-10 (rank : 88)
Query Neighborhood Hits	434	Target Neighborhood Hits	336	Shared Neighborhood Hits	326
SwissProt Accessions	Q04741, Q86XB0	Gene names	EMX1
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty spiracles- like protein 1).

NKX28_HUMAN
NC score	0.911426 (rank : 28)	θ value	1.33837e-11 (rank : 64)
Query Neighborhood Hits	434	Target Neighborhood Hits	352	Shared Neighborhood Hits	335
SwissProt Accessions	O15522	Gene names	NKX2-8, NKX-2.8, NKX2G, NKX2H
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H).

NKX31_HUMAN
NC score	0.910860 (rank : 29)	θ value	1.33837e-11 (rank : 65)
Query Neighborhood Hits	434	Target Neighborhood Hits	331	Shared Neighborhood Hits	313
SwissProt Accessions	Q99801, O15465, Q9H2P4, Q9H2P5, Q9H2P6, Q9H2P7, Q9HBG0	Gene names	NKX3-1, NKX3.1, NKX3A
Domain Architecture
Description	Homeobox protein Nkx-3.1.

NKX32_HUMAN
NC score	0.910352 (rank : 30)	θ value	1.09485e-13 (rank : 27)
Query Neighborhood Hits	434	Target Neighborhood Hits	323	Shared Neighborhood Hits	315
SwissProt Accessions	P78367	Gene names	BAPX1, NKX3B
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

BARH1_MOUSE
NC score	0.910295 (rank : 31)	θ value	1.86753e-13 (rank : 28)
Query Neighborhood Hits	434	Target Neighborhood Hits	350	Shared Neighborhood Hits	327
SwissProt Accessions	P63157, Q9JK26	Gene names	Barhl1, Bhx1, Mbh2
Domain Architecture	No domain graphic available
Description	BarH-like 1 homeobox protein (Bar-class homeodomain protein MBH2) (BarH-related homeobox protein 1).

NKX61_HUMAN
NC score	0.910216 (rank : 32)	θ value	1.74796e-11 (rank : 70)
Query Neighborhood Hits	434	Target Neighborhood Hits	431	Shared Neighborhood Hits	330
SwissProt Accessions	P78426	Gene names	NKX6-1, NKX6A
Domain Architecture
Description	Homeobox protein Nkx-6.1.

NKX61_MOUSE
NC score	0.909933 (rank : 33)	θ value	1.74796e-11 (rank : 71)
Query Neighborhood Hits	434	Target Neighborhood Hits	439	Shared Neighborhood Hits	330
SwissProt Accessions	Q99MA9, Q9ERQ7	Gene names	Nkx6-1, Nkx6.1, Nkx6a
Domain Architecture
Description	Homeobox protein Nkx-6.1.

NKX26_MOUSE
NC score	0.909463 (rank : 34)	θ value	1.02475e-11 (rank : 59)
Query Neighborhood Hits	434	Target Neighborhood Hits	343	Shared Neighborhood Hits	317
SwissProt Accessions	P43688	Gene names	Nkx2-6, Nkx-2.6, Nkx2f
Domain Architecture
Description	Homeobox protein Nkx-2.6 (Homeobox protein NK-2 homolog F).

BARH1_HUMAN
NC score	0.909017 (rank : 35)	θ value	9.26847e-13 (rank : 39)
Query Neighborhood Hits	434	Target Neighborhood Hits	373	Shared Neighborhood Hits	329
SwissProt Accessions	Q9BZE3, Q9NY88	Gene names	BARHL1
Domain Architecture
Description	BarH-like 1 homeobox protein.

HMX3_MOUSE
NC score	0.908745 (rank : 36)	θ value	3.89403e-11 (rank : 77)
Query Neighborhood Hits	434	Target Neighborhood Hits	342	Shared Neighborhood Hits	324
SwissProt Accessions	P42581	Gene names	Hmx3, Nkx-5.1, Nkx5-1
Domain Architecture
Description	Homeobox protein HMX3 (Homeobox protein Nkx-5.1).

EMX2_HUMAN
NC score	0.908708 (rank : 37)	θ value	1.47974e-10 (rank : 89)
Query Neighborhood Hits	434	Target Neighborhood Hits	341	Shared Neighborhood Hits	328
SwissProt Accessions	Q04743, Q96NN8, Q9BQF4	Gene names	EMX2
Domain Architecture
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

EMX2_MOUSE
NC score	0.908701 (rank : 38)	θ value	1.9326e-10 (rank : 94)
Query Neighborhood Hits	434	Target Neighborhood Hits	340	Shared Neighborhood Hits	328
SwissProt Accessions	Q04744, Q80UE7	Gene names	Emx2, Emx-2
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

HMX2_MOUSE
NC score	0.908293 (rank : 39)	θ value	8.11959e-09 (rank : 135)
Query Neighborhood Hits	434	Target Neighborhood Hits	354	Shared Neighborhood Hits	328
SwissProt Accessions	P43687, Q8R1Q2	Gene names	Hmx2, Nkx-5.2, Nkx5-2
Domain Architecture
Description	Homeobox protein HMX2 (Homeobox protein Nkx-5.2).

LBX1_MOUSE
NC score	0.907517 (rank : 40)	θ value	7.34386e-10 (rank : 105)
Query Neighborhood Hits	434	Target Neighborhood Hits	349	Shared Neighborhood Hits	326
SwissProt Accessions	P52955	Gene names	Lbx1, Lbx1h
Domain Architecture
Description	Transcription factor LBX1.

NKX32_MOUSE
NC score	0.907204 (rank : 41)	θ value	4.59992e-12 (rank : 52)
Query Neighborhood Hits	434	Target Neighborhood Hits	326	Shared Neighborhood Hits	314
SwissProt Accessions	P97503	Gene names	Bapx1, Nkx-3.2, Nkx3-2, Nkx3b
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

LBX1_HUMAN
NC score	0.906931 (rank : 42)	θ value	9.59137e-10 (rank : 110)
Query Neighborhood Hits	434	Target Neighborhood Hits	357	Shared Neighborhood Hits	328
SwissProt Accessions	P52954	Gene names	LBX1
Domain Architecture
Description	Transcription factor LBX1.

NKX23_HUMAN
NC score	0.905783 (rank : 43)	θ value	2.20605e-14 (rank : 23)
Query Neighborhood Hits	434	Target Neighborhood Hits	346	Shared Neighborhood Hits	327
SwissProt Accessions	Q8TAU0, Q9NYS6	Gene names	NKX2-3, NKX23, NKX2C
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NKX-2.3) (Homeobox protein NK-2 homolog C).

NKX31_MOUSE
NC score	0.904454 (rank : 44)	θ value	5.08577e-11 (rank : 78)
Query Neighborhood Hits	434	Target Neighborhood Hits	379	Shared Neighborhood Hits	315
SwissProt Accessions	P97436, O09087	Gene names	Nkx3-1, Nkx-3.1, Nkx3a
Domain Architecture
Description	Homeobox protein Nkx-3.1.

NKX23_MOUSE
NC score	0.904414 (rank : 45)	θ value	2.88119e-14 (rank : 24)
Query Neighborhood Hits	434	Target Neighborhood Hits	340	Shared Neighborhood Hits	323
SwissProt Accessions	P97334, Q9QZ60, Q9WV67	Gene names	Nkx2-3, Nkx-2.3, Nkx2c
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NK-2 homolog C) (Nkx2-C) (Homeobox protein NK-2 homolog 3).

NKX25_HUMAN
NC score	0.903684 (rank : 46)	θ value	2.0648e-12 (rank : 47)
Query Neighborhood Hits	434	Target Neighborhood Hits	338	Shared Neighborhood Hits	324
SwissProt Accessions	P52952	Gene names	NKX2-5, CSX, NKX2.5, NKX2E
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

VAX2_HUMAN
NC score	0.903646 (rank : 47)	θ value	1.02475e-11 (rank : 60)
Query Neighborhood Hits	434	Target Neighborhood Hits	337	Shared Neighborhood Hits	319
SwissProt Accessions	Q9UIW0	Gene names	VAX2
Domain Architecture
Description	Ventral anterior homeobox 2.

VAX2_MOUSE
NC score	0.903119 (rank : 48)	θ value	1.02475e-11 (rank : 61)
Query Neighborhood Hits	434	Target Neighborhood Hits	338	Shared Neighborhood Hits	320
SwissProt Accessions	Q9WTP9	Gene names	Vax2, Vex
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 2 (Ventral retina homeodomain protein).

BARH2_MOUSE
NC score	0.902929 (rank : 49)	θ value	1.74796e-11 (rank : 67)
Query Neighborhood Hits	434	Target Neighborhood Hits	397	Shared Neighborhood Hits	327
SwissProt Accessions	Q8VIB5, Q66L43	Gene names	Barhl2, Barh1, Mbh1
Domain Architecture	No domain graphic available
Description	BarH-like 2 homeobox protein (Bar-class homeodomain protein MBH1) (Homeobox protein B-H1).

NKX25_MOUSE
NC score	0.902107 (rank : 50)	θ value	4.59992e-12 (rank : 51)
Query Neighborhood Hits	434	Target Neighborhood Hits	347	Shared Neighborhood Hits	325
SwissProt Accessions	P42582, P97335	Gene names	Nkx2-5, Csx, Nkx-2.5, Nkx2e
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

BARH2_HUMAN
NC score	0.901116 (rank : 51)	θ value	1.74796e-11 (rank : 66)
Query Neighborhood Hits	434	Target Neighborhood Hits	419	Shared Neighborhood Hits	328
SwissProt Accessions	Q9NY43, Q7Z4N7	Gene names	BARHL2
Domain Architecture
Description	BarH-like 2 homeobox protein.

VAX1_HUMAN
NC score	0.898375 (rank : 52)	θ value	7.34386e-10 (rank : 107)
Query Neighborhood Hits	434	Target Neighborhood Hits	355	Shared Neighborhood Hits	324
SwissProt Accessions	Q5SQQ9, Q6ZSX0	Gene names	VAX1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

VAX1_MOUSE
NC score	0.897771 (rank : 53)	θ value	3.64472e-09 (rank : 127)
Query Neighborhood Hits	434	Target Neighborhood Hits	351	Shared Neighborhood Hits	323
SwissProt Accessions	Q2NKI2, O88880	Gene names	Vax1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

HHEX_MOUSE
NC score	0.896316 (rank : 54)	θ value	1.47974e-10 (rank : 90)
Query Neighborhood Hits	434	Target Neighborhood Hits	350	Shared Neighborhood Hits	316
SwissProt Accessions	P43120	Gene names	Hhex, Prhx
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

NKX22_HUMAN
NC score	0.894813 (rank : 55)	θ value	4.16044e-13 (rank : 35)
Query Neighborhood Hits	434	Target Neighborhood Hits	342	Shared Neighborhood Hits	327
SwissProt Accessions	O95096	Gene names	NKX2-2, NKX2.2, NKX2B
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

NKX22_MOUSE
NC score	0.894445 (rank : 56)	θ value	1.2105e-12 (rank : 42)
Query Neighborhood Hits	434	Target Neighborhood Hits	336	Shared Neighborhood Hits	327
SwissProt Accessions	P42586	Gene names	Nkx2-2, Nkx-2.2, Nkx2b
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

GBX1_HUMAN
NC score	0.893931 (rank : 57)	θ value	9.59137e-10 (rank : 108)
Query Neighborhood Hits	434	Target Neighborhood Hits	334	Shared Neighborhood Hits	300
SwissProt Accessions	Q14549	Gene names	GBX1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

HXB1_HUMAN
NC score	0.892677 (rank : 58)	θ value	1.68911e-14 (rank : 22)
Query Neighborhood Hits	434	Target Neighborhood Hits	356	Shared Neighborhood Hits	324
SwissProt Accessions	P14653	Gene names	HOXB1, HOX2I
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2I).

HXB1_MOUSE
NC score	0.892634 (rank : 59)	θ value	1.2105e-12 (rank : 41)
Query Neighborhood Hits	434	Target Neighborhood Hits	341	Shared Neighborhood Hits	325
SwissProt Accessions	P17919, Q3ZAY6, Q9CYH3	Gene names	Hoxb1, Hox-2.9, Hoxb-1
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2.9).

GBX1_MOUSE
NC score	0.892461 (rank : 60)	θ value	2.52405e-10 (rank : 98)
Query Neighborhood Hits	434	Target Neighborhood Hits	350	Shared Neighborhood Hits	299
SwissProt Accessions	P82976, Q8CGW5	Gene names	Gbx1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

CDX1_MOUSE
NC score	0.891779 (rank : 61)	θ value	2.69671e-12 (rank : 48)
Query Neighborhood Hits	434	Target Neighborhood Hits	379	Shared Neighborhood Hits	306
SwissProt Accessions	P18111, Q8VCF7	Gene names	Cdx1, Cdx-1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

HHEX_HUMAN
NC score	0.891470 (rank : 62)	θ value	1.38499e-08 (rank : 143)
Query Neighborhood Hits	434	Target Neighborhood Hits	358	Shared Neighborhood Hits	313
SwissProt Accessions	Q03014	Gene names	HHEX, HEX, PRH, PRHX
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

MEOX1_HUMAN
NC score	0.890716 (rank : 63)	θ value	2.98157e-11 (rank : 76)
Query Neighborhood Hits	434	Target Neighborhood Hits	342	Shared Neighborhood Hits	319
SwissProt Accessions	P50221	Gene names	MEOX1, MOX1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

GBX2_HUMAN
NC score	0.890311 (rank : 64)	θ value	1.63604e-09 (rank : 115)
Query Neighborhood Hits	434	Target Neighborhood Hits	322	Shared Neighborhood Hits	304
SwissProt Accessions	P52951, O43833, Q53RX5, Q9Y5Y1	Gene names	GBX2
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2).

TLX2_MOUSE
NC score	0.890298 (rank : 65)	θ value	1.74796e-11 (rank : 72)
Query Neighborhood Hits	434	Target Neighborhood Hits	336	Shared Neighborhood Hits	316
SwissProt Accessions	Q61663	Gene names	Tlx2, Hox11l1, Tlx1l1
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Homeobox TLX-2) (PMUR10F).

CDX1_HUMAN
NC score	0.890245 (rank : 66)	θ value	1.74796e-11 (rank : 68)
Query Neighborhood Hits	434	Target Neighborhood Hits	382	Shared Neighborhood Hits	313
SwissProt Accessions	P47902, Q4VAU4, Q9NYK8	Gene names	CDX1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

MEOX1_MOUSE
NC score	0.890184 (rank : 67)	θ value	7.34386e-10 (rank : 106)
Query Neighborhood Hits	434	Target Neighborhood Hits	345	Shared Neighborhood Hits	324
SwissProt Accessions	P32442	Gene names	Meox1, Mox-1, Mox1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

EVX2_MOUSE
NC score	0.890066 (rank : 68)	θ value	4.59992e-12 (rank : 49)
Query Neighborhood Hits	434	Target Neighborhood Hits	327	Shared Neighborhood Hits	316
SwissProt Accessions	P49749	Gene names	Evx2, Evx-2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

HME2_HUMAN
NC score	0.889949 (rank : 69)	θ value	5.62301e-10 (rank : 101)
Query Neighborhood Hits	434	Target Neighborhood Hits	355	Shared Neighborhood Hits	326
SwissProt Accessions	P19622	Gene names	EN2
Domain Architecture
Description	Homeobox protein engrailed-2 (Hu-En-2).

GBX2_MOUSE
NC score	0.889597 (rank : 70)	θ value	1.63604e-09 (rank : 116)
Query Neighborhood Hits	434	Target Neighborhood Hits	326	Shared Neighborhood Hits	302
SwissProt Accessions	P48031	Gene names	Gbx2, Mmoxa, Stra7
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2) (Homeobox protein STRA7).

CDX4_HUMAN
NC score	0.889406 (rank : 71)	θ value	1.47974e-10 (rank : 87)
Query Neighborhood Hits	434	Target Neighborhood Hits	366	Shared Neighborhood Hits	323
SwissProt Accessions	O14627, Q5JS20	Gene names	CDX4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

EVX2_HUMAN
NC score	0.889309 (rank : 72)	θ value	2.98157e-11 (rank : 75)
Query Neighborhood Hits	434	Target Neighborhood Hits	325	Shared Neighborhood Hits	313
SwissProt Accessions	Q03828	Gene names	EVX2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

NKX24_MOUSE
NC score	0.889265 (rank : 73)	θ value	2.0648e-12 (rank : 46)
Query Neighborhood Hits	434	Target Neighborhood Hits	356	Shared Neighborhood Hits	321
SwissProt Accessions	Q9EQM3, Q9EQM4	Gene names	Nkx2-4, Nkx2d
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

TLX2_HUMAN
NC score	0.888978 (rank : 74)	θ value	5.08577e-11 (rank : 79)
Query Neighborhood Hits	434	Target Neighborhood Hits	352	Shared Neighborhood Hits	318
SwissProt Accessions	O43763, Q9UQ48	Gene names	TLX2, HOX11L1, NCX
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Neural crest homeobox protein).

HME2_MOUSE
NC score	0.888664 (rank : 75)	θ value	5.62301e-10 (rank : 102)
Query Neighborhood Hits	434	Target Neighborhood Hits	352	Shared Neighborhood Hits	327
SwissProt Accessions	P09066	Gene names	En2, En-2
Domain Architecture
Description	Homeobox protein engrailed-2 (Mo-En-2).

MEOX2_MOUSE
NC score	0.888653 (rank : 76)	θ value	1.25267e-09 (rank : 113)
Query Neighborhood Hits	434	Target Neighborhood Hits	341	Shared Neighborhood Hits	317
SwissProt Accessions	P32443, Q544T6	Gene names	Meox2, Gax, Mox-2, Mox2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2).

NKX24_HUMAN
NC score	0.888176 (rank : 77)	θ value	5.43371e-13 (rank : 36)
Query Neighborhood Hits	434	Target Neighborhood Hits	366	Shared Neighborhood Hits	324
SwissProt Accessions	Q9H2Z4	Gene names	NKX2-4, NKX2D
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

MEOX2_HUMAN
NC score	0.888151 (rank : 78)	θ value	4.76016e-09 (rank : 133)
Query Neighborhood Hits	434	Target Neighborhood Hits	340	Shared Neighborhood Hits	317
SwissProt Accessions	P50222, O75263, Q9UPL6	Gene names	MEOX2, GAX, MOX2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth arrest-specific homeobox).

HXA1_MOUSE
NC score	0.887886 (rank : 79)	θ value	2.0648e-12 (rank : 43)
Query Neighborhood Hits	434	Target Neighborhood Hits	341	Shared Neighborhood Hits	322
SwissProt Accessions	P09022, P15463	Gene names	Hoxa1, Era-1, Hox-1.6, Hoxa-1
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399).

HXA1_HUMAN
NC score	0.887600 (rank : 80)	θ value	4.16044e-13 (rank : 33)
Query Neighborhood Hits	434	Target Neighborhood Hits	334	Shared Neighborhood Hits	320
SwissProt Accessions	P49639, O43363	Gene names	HOXA1, HOX1F
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1F).

CDX2_MOUSE
NC score	0.887305 (rank : 81)	θ value	7.84624e-12 (rank : 57)
Query Neighborhood Hits	434	Target Neighborhood Hits	336	Shared Neighborhood Hits	308
SwissProt Accessions	P43241	Gene names	Cdx2, Cdx-2
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2).

TITF1_MOUSE
NC score	0.887285 (rank : 82)	θ value	1.47974e-10 (rank : 93)
Query Neighborhood Hits	434	Target Neighborhood Hits	335	Shared Neighborhood Hits	321
SwissProt Accessions	P50220	Gene names	Titf1, Nkx-2.1, Nkx2-1, Ttf1
Domain Architecture	No domain graphic available
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1).

HME1_HUMAN
NC score	0.886412 (rank : 83)	θ value	8.67504e-11 (rank : 83)
Query Neighborhood Hits	434	Target Neighborhood Hits	384	Shared Neighborhood Hits	322
SwissProt Accessions	Q05925	Gene names	EN1
Domain Architecture
Description	Homeobox protein engrailed-1 (Hu-En-1).

CDX2_HUMAN
NC score	0.886124 (rank : 84)	θ value	1.74796e-11 (rank : 69)
Query Neighborhood Hits	434	Target Neighborhood Hits	330	Shared Neighborhood Hits	306
SwissProt Accessions	Q99626, O00503, Q969L8	Gene names	CDX2, CDX3
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2) (CDX-3).

TLX3_MOUSE
NC score	0.886119 (rank : 85)	θ value	2.28291e-11 (rank : 74)
Query Neighborhood Hits	434	Target Neighborhood Hits	346	Shared Neighborhood Hits	324
SwissProt Accessions	O55144	Gene names	Tlx3, Hox11l2, Rnx, Tlx1l2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox TLX-3) (Homeobox protein Hox-11L2) (Respiratory neuron homeobox protein).

HME1_MOUSE
NC score	0.886050 (rank : 86)	θ value	2.52405e-10 (rank : 99)
Query Neighborhood Hits	434	Target Neighborhood Hits	397	Shared Neighborhood Hits	321
SwissProt Accessions	P09065	Gene names	En1, En-1
Domain Architecture
Description	Homeobox protein engrailed-1 (Mo-En-1).

EVX1_MOUSE
NC score	0.885899 (rank : 87)	θ value	1.25267e-09 (rank : 112)
Query Neighborhood Hits	434	Target Neighborhood Hits	350	Shared Neighborhood Hits	319
SwissProt Accessions	P23683	Gene names	Evx1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

TITF1_HUMAN
NC score	0.885456 (rank : 88)	θ value	1.133e-10 (rank : 85)
Query Neighborhood Hits	434	Target Neighborhood Hits	332	Shared Neighborhood Hits	321
SwissProt Accessions	P43699, O14954, O14955, Q9BRJ8	Gene names	TITF1, NKX2-1, NKX2A, TTF1
Domain Architecture
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1) (Homeobox protein NK-2 homolog A).

HLX1_HUMAN
NC score	0.884469 (rank : 89)	θ value	9.59137e-10 (rank : 109)
Query Neighborhood Hits	434	Target Neighborhood Hits	370	Shared Neighborhood Hits	309
SwissProt Accessions	Q14774, Q15988	Gene names	HLX1
Domain Architecture
Description	Homeobox protein HLX1 (Homeobox protein HB24).

PEPP1_HUMAN
NC score	0.884253 (rank : 90)	θ value	2.13673e-09 (rank : 121)
Query Neighborhood Hits	434	Target Neighborhood Hits	338	Shared Neighborhood Hits	326
SwissProt Accessions	Q8NHV9, O95030, Q3SYE0	Gene names	PEPP1, OTEX
Domain Architecture
Description	Paired-like homeobox protein PEPP-1 (Ovary-, testis- and epididymis- expressed gene protein).

HXB2_MOUSE
NC score	0.884044 (rank : 91)	θ value	7.84624e-12 (rank : 58)
Query Neighborhood Hits	434	Target Neighborhood Hits	350	Shared Neighborhood Hits	313
SwissProt Accessions	P0C1T1	Gene names	Hoxb2, Hox-2.8
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-B2 (Hox-2.8).

HLX1_MOUSE
NC score	0.883816 (rank : 92)	θ value	3.64472e-09 (rank : 124)
Query Neighborhood Hits	434	Target Neighborhood Hits	362	Shared Neighborhood Hits	308
SwissProt Accessions	Q61670	Gene names	Hlx1, Hlx
Domain Architecture
Description	Homeobox protein HLX1.

CDX4_MOUSE
NC score	0.883233 (rank : 93)	θ value	2.52405e-10 (rank : 97)
Query Neighborhood Hits	434	Target Neighborhood Hits	378	Shared Neighborhood Hits	319
SwissProt Accessions	Q07424	Gene names	Cdx4, Cdx-4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

EVX1_HUMAN
NC score	0.882630 (rank : 94)	θ value	1.9326e-10 (rank : 95)
Query Neighborhood Hits	434	Target Neighborhood Hits	349	Shared Neighborhood Hits	317
SwissProt Accessions	P49640	Gene names	EVX1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

TLX1_HUMAN
NC score	0.881523 (rank : 95)	θ value	6.64225e-11 (rank : 81)
Query Neighborhood Hits	434	Target Neighborhood Hits	347	Shared Neighborhood Hits	321
SwissProt Accessions	P31314, O75699, Q9HCA0	Gene names	TLX1, HOX11, TCL3
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (TCL-3 proto-oncogene).

IPF1_HUMAN
NC score	0.881279 (rank : 96)	θ value	4.76016e-09 (rank : 131)
Query Neighborhood Hits	434	Target Neighborhood Hits	330	Shared Neighborhood Hits	313
SwissProt Accessions	P52945, O60594	Gene names	IPF1, PDX1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Pancreas/duodenum homeobox 1) (PDX- 1) (Islet/duodenum homeobox-1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Insulin upstream factor 1) (IUF-1) (Glucose- sensitive factor) (GSF).

IPF1_MOUSE
NC score	0.880792 (rank : 97)	θ value	4.76016e-09 (rank : 132)
Query Neighborhood Hits	434	Target Neighborhood Hits	340	Shared Neighborhood Hits	314
SwissProt Accessions	P52946	Gene names	Ipf1, Pdx1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Islet/duodenum homeobox 1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Pancreas/duodenum homeobox 1).

GSH2_HUMAN
NC score	0.880320 (rank : 98)	θ value	1.06045e-08 (rank : 141)
Query Neighborhood Hits	434	Target Neighborhood Hits	324	Shared Neighborhood Hits	313
SwissProt Accessions	Q9BZM3	Gene names	GSH2
Domain Architecture
Description	Homeobox protein GSH-2.

TLX3_HUMAN
NC score	0.880127 (rank : 99)	θ value	2.28291e-11 (rank : 73)
Query Neighborhood Hits	434	Target Neighborhood Hits	403	Shared Neighborhood Hits	327
SwissProt Accessions	O43711, Q96AD3	Gene names	TLX3, HOX11L2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox protein Hox-11L2).

TLX1_MOUSE
NC score	0.880113 (rank : 100)	θ value	6.64225e-11 (rank : 82)
Query Neighborhood Hits	434	Target Neighborhood Hits	347	Shared Neighborhood Hits	320
SwissProt Accessions	P43345	Gene names	Tlx1, Hox11, Tlx-1
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (Homeobox TLX-1).

GSH2_MOUSE
NC score	0.879037 (rank : 101)	θ value	8.97725e-08 (rank : 175)
Query Neighborhood Hits	434	Target Neighborhood Hits	319	Shared Neighborhood Hits	312
SwissProt Accessions	P31316	Gene names	Gsh2, Gsh-2
Domain Architecture
Description	Homeobox protein GSH-2.

GSHI_HUMAN
NC score	0.878379 (rank : 102)	θ value	8.97725e-08 (rank : 176)
Query Neighborhood Hits	434	Target Neighborhood Hits	314	Shared Neighborhood Hits	312
SwissProt Accessions	Q9H4S2	Gene names	GSH1
Domain Architecture
Description	Homeobox protein GSH-1.

GSHI_MOUSE
NC score	0.878304 (rank : 103)	θ value	1.17247e-07 (rank : 180)
Query Neighborhood Hits	434	Target Neighborhood Hits	313	Shared Neighborhood Hits	310
SwissProt Accessions	P31315	Gene names	Gsh1, Gsh-1
Domain Architecture
Description	Homeobox protein GSH-1.

HXB2_HUMAN
NC score	0.878295 (rank : 104)	θ value	4.16044e-13 (rank : 34)
Query Neighborhood Hits	434	Target Neighborhood Hits	367	Shared Neighborhood Hits	315
SwissProt Accessions	P14652, P10913, P17485	Gene names	HOXB2, HOX2H
Domain Architecture
Description	Homeobox protein Hox-B2 (Hox-2H) (Hox-2.8) (K8).

HXA2_MOUSE
NC score	0.875913 (rank : 105)	θ value	1.63604e-09 (rank : 117)
Query Neighborhood Hits	434	Target Neighborhood Hits	338	Shared Neighborhood Hits	313
SwissProt Accessions	P31245, Q149U3, Q920T8	Gene names	Hoxa2, Hox-1.11, Hoxa-2
Domain Architecture
Description	Homeobox protein Hox-A2 (Hox-1.11) (Hox1.11).

HXA2_HUMAN
NC score	0.873930 (rank : 106)	θ value	5.62301e-10 (rank : 103)
Query Neighborhood Hits	434	Target Neighborhood Hits	370	Shared Neighborhood Hits	315
SwissProt Accessions	O43364	Gene names	HOXA2
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A2.

ARX_HUMAN
NC score	0.872572 (rank : 107)	θ value	4.16044e-13 (rank : 31)
Query Neighborhood Hits	434	Target Neighborhood Hits	401	Shared Neighborhood Hits	327
SwissProt Accessions	Q96QS3	Gene names	ARX
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

ARX_MOUSE
NC score	0.871236 (rank : 108)	θ value	4.16044e-13 (rank : 32)
Query Neighborhood Hits	434	Target Neighborhood Hits	398	Shared Neighborhood Hits	327
SwissProt Accessions	O35085, Q9QYT4	Gene names	Arx
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

HXD3_MOUSE
NC score	0.870107 (rank : 109)	θ value	1.9326e-10 (rank : 96)
Query Neighborhood Hits	434	Target Neighborhood Hits	435	Shared Neighborhood Hits	325
SwissProt Accessions	P09027, Q3UUD3	Gene names	Hoxd3, Hox-4.1, Hoxd-3
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4.1) (Homeobox protein MH-19).

HXD3_HUMAN
NC score	0.869578 (rank : 110)	θ value	8.67504e-11 (rank : 84)
Query Neighborhood Hits	434	Target Neighborhood Hits	433	Shared Neighborhood Hits	322
SwissProt Accessions	P31249, Q99955, Q9BSC5	Gene names	HOXD3, HOX4A
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4A).

HXD1_MOUSE
NC score	0.868292 (rank : 111)	θ value	6.87365e-08 (rank : 174)
Query Neighborhood Hits	434	Target Neighborhood Hits	381	Shared Neighborhood Hits	327
SwissProt Accessions	Q01822	Gene names	Hoxd1, Hox-4.9, Hoxd-1
Domain Architecture
Description	Homeobox protein Hox-D1 (Hox-4.9).

HXD1_HUMAN
NC score	0.868075 (rank : 112)	θ value	2.61198e-07 (rank : 196)
Query Neighborhood Hits	434	Target Neighborhood Hits	337	Shared Neighborhood Hits	318
SwissProt Accessions	Q9GZZ0	Gene names	HOXD1
Domain Architecture
Description	Homeobox protein Hox-D1.

HXA3_HUMAN
NC score	0.866383 (rank : 113)	θ value	7.09661e-13 (rank : 38)
Query Neighborhood Hits	434	Target Neighborhood Hits	535	Shared Neighborhood Hits	335
SwissProt Accessions	O43365	Gene names	HOXA3, HOX1E
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1E).

HXD12_HUMAN
NC score	0.865338 (rank : 114)	θ value	6.21693e-09 (rank : 134)
Query Neighborhood Hits	434	Target Neighborhood Hits	334	Shared Neighborhood Hits	317
SwissProt Accessions	P35452, Q9NS03	Gene names	HOXD12, HOX4H
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4H).

HXA3_MOUSE
NC score	0.864934 (rank : 115)	θ value	1.2105e-12 (rank : 40)
Query Neighborhood Hits	434	Target Neighborhood Hits	558	Shared Neighborhood Hits	338
SwissProt Accessions	P02831, Q4V9Z8, Q61197	Gene names	Hoxa3, Hox-1.5, Hoxa-3
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1.5) (MO-10).

ESX1L_HUMAN
NC score	0.864426 (rank : 116)	θ value	1.06045e-08 (rank : 140)
Query Neighborhood Hits	434	Target Neighborhood Hits	498	Shared Neighborhood Hits	327
SwissProt Accessions	Q8N693, Q7Z6K7	Gene names	ESX1L, ESX1R
Domain Architecture
Description	Extraembryonic, spermatogenesis, homeobox 1-like protein.

RX_HUMAN
NC score	0.861393 (rank : 117)	θ value	3.64472e-09 (rank : 126)
Query Neighborhood Hits	434	Target Neighborhood Hits	423	Shared Neighborhood Hits	335
SwissProt Accessions	Q9Y2V3	Gene names	RAX, RX
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

HESX1_MOUSE
NC score	0.860288 (rank : 118)	θ value	2.88788e-06 (rank : 224)
Query Neighborhood Hits	434	Target Neighborhood Hits	331	Shared Neighborhood Hits	312
SwissProt Accessions	Q61658, Q61047	Gene names	Hesx1, Hes-1, Rpx
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (Anterior- restricted homeobox protein) (Rathke pouch homeo box).

PROP1_HUMAN
NC score	0.860191 (rank : 119)	θ value	3.18553e-13 (rank : 30)
Query Neighborhood Hits	434	Target Neighborhood Hits	354	Shared Neighborhood Hits	335
SwissProt Accessions	O75360	Gene names	PROP1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

HXB3_MOUSE
NC score	0.859300 (rank : 120)	θ value	1.47974e-10 (rank : 92)
Query Neighborhood Hits	434	Target Neighborhood Hits	493	Shared Neighborhood Hits	333
SwissProt Accessions	P09026, P10285, Q4PJ06, Q61680	Gene names	Hoxb3, Hox-2.7, Hoxb-3
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2.7) (Homeobox protein MH-23).

OTP_MOUSE
NC score	0.858938 (rank : 121)	θ value	4.0297e-08 (rank : 160)
Query Neighborhood Hits	434	Target Neighborhood Hits	387	Shared Neighborhood Hits	331
SwissProt Accessions	O09113	Gene names	Otp
Domain Architecture
Description	Homeobox protein orthopedia.

HXD11_HUMAN
NC score	0.858903 (rank : 122)	θ value	2.36244e-08 (rank : 149)
Query Neighborhood Hits	434	Target Neighborhood Hits	353	Shared Neighborhood Hits	322
SwissProt Accessions	P31277, Q9NS02	Gene names	HOXD11, HOX4F
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4F).

RX_MOUSE
NC score	0.858650 (rank : 123)	θ value	1.17247e-07 (rank : 185)
Query Neighborhood Hits	434	Target Neighborhood Hits	429	Shared Neighborhood Hits	334
SwissProt Accessions	O35602, O08748	Gene names	Rax, Rx
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

HXA4_MOUSE
NC score	0.858123 (rank : 124)	θ value	9.90251e-15 (rank : 21)
Query Neighborhood Hits	434	Target Neighborhood Hits	379	Shared Neighborhood Hits	316
SwissProt Accessions	P06798, Q61684, Q64388, Q8BPE6	Gene names	Hoxa4, Hox-1.4, Hoxa-4
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1.4) (Homeobox protein MH-3).

PHX2A_HUMAN
NC score	0.858054 (rank : 125)	θ value	2.13673e-09 (rank : 122)
Query Neighborhood Hits	434	Target Neighborhood Hits	345	Shared Neighborhood Hits	320
SwissProt Accessions	O14813, Q8IVZ2	Gene names	PHOX2A, ARIX, PMX2A
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (Aristaless homeobox protein homolog) (ARIX1 homeodomain protein).

PITX3_MOUSE
NC score	0.857703 (rank : 126)	θ value	1.06045e-08 (rank : 142)
Query Neighborhood Hits	434	Target Neighborhood Hits	380	Shared Neighborhood Hits	337
SwissProt Accessions	O35160	Gene names	Pitx3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

HXD12_MOUSE
NC score	0.857433 (rank : 127)	θ value	1.53129e-07 (rank : 188)
Query Neighborhood Hits	434	Target Neighborhood Hits	370	Shared Neighborhood Hits	320
SwissProt Accessions	P23812	Gene names	Hoxd12, Hox-4.7, Hoxd-12
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4.7) (Hox-5.6).

HXA11_HUMAN
NC score	0.857372 (rank : 128)	θ value	6.00763e-12 (rank : 54)
Query Neighborhood Hits	434	Target Neighborhood Hits	334	Shared Neighborhood Hits	309
SwissProt Accessions	P31270	Gene names	HOXA11, HOX1I
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1I).

PHX2A_MOUSE
NC score	0.857317 (rank : 129)	θ value	1.25267e-09 (rank : 114)
Query Neighborhood Hits	434	Target Neighborhood Hits	338	Shared Neighborhood Hits	320
SwissProt Accessions	Q62066	Gene names	Phox2a, Arix, Phox2, Pmx2, Pmx2a
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (PHOX2A homeodomain protein) (Aristaless homeobox protein homolog).

PITX3_HUMAN
NC score	0.857128 (rank : 130)	θ value	4.0297e-08 (rank : 161)
Query Neighborhood Hits	434	Target Neighborhood Hits	366	Shared Neighborhood Hits	336
SwissProt Accessions	O75364	Gene names	PITX3, PTX3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

HXD11_MOUSE
NC score	0.856722 (rank : 131)	θ value	5.26297e-08 (rank : 166)
Query Neighborhood Hits	434	Target Neighborhood Hits	376	Shared Neighborhood Hits	322
SwissProt Accessions	P23813	Gene names	Hoxd11, Hox-4.6, Hoxd-11
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5).

HESX1_HUMAN
NC score	0.856234 (rank : 132)	θ value	8.40245e-06 (rank : 234)
Query Neighborhood Hits	434	Target Neighborhood Hits	326	Shared Neighborhood Hits	314
SwissProt Accessions	Q9UBX0, Q99667	Gene names	HESX1, HANF
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (hAnf).

HXA4_HUMAN
NC score	0.855586 (rank : 133)	θ value	6.00763e-12 (rank : 55)
Query Neighborhood Hits	434	Target Neighborhood Hits	370	Shared Neighborhood Hits	313
SwissProt Accessions	Q00056, O43366	Gene names	HOXA4, HOX1D
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4).

HXC11_HUMAN
NC score	0.855078 (rank : 134)	θ value	2.79066e-09 (rank : 123)
Query Neighborhood Hits	434	Target Neighborhood Hits	349	Shared Neighborhood Hits	317
SwissProt Accessions	O43248, Q96DH2	Gene names	HOXC11
Domain Architecture
Description	Homeobox protein Hox-C11.

HXC4_MOUSE
NC score	0.854372 (rank : 135)	θ value	1.38499e-08 (rank : 145)
Query Neighborhood Hits	434	Target Neighborhood Hits	365	Shared Neighborhood Hits	321
SwissProt Accessions	Q08624	Gene names	Hoxc4, Hox-3.5, Hoxc-4
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3.5).

HXA11_MOUSE
NC score	0.852939 (rank : 136)	θ value	1.33837e-11 (rank : 63)
Query Neighborhood Hits	434	Target Neighborhood Hits	327	Shared Neighborhood Hits	309
SwissProt Accessions	P31311, Q3V026	Gene names	Hoxa11, Hox-1.9, Hoxa-11
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1.9).

HXB3_HUMAN
NC score	0.852934 (rank : 137)	θ value	1.47974e-10 (rank : 91)
Query Neighborhood Hits	434	Target Neighborhood Hits	559	Shared Neighborhood Hits	341
SwissProt Accessions	P14651, O95615, P17484	Gene names	HOXB3, HOX2G
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7).

GSCL_HUMAN
NC score	0.852825 (rank : 138)	θ value	4.92598e-06 (rank : 230)
Query Neighborhood Hits	434	Target Neighborhood Hits	343	Shared Neighborhood Hits	323
SwissProt Accessions	O15499	Gene names	GSCL
Domain Architecture
Description	Homeobox protein goosecoid-like (GSC-2).

PEPP2_HUMAN
NC score	0.851374 (rank : 139)	θ value	9.29e-05 (rank : 251)
Query Neighborhood Hits	434	Target Neighborhood Hits	316	Shared Neighborhood Hits	304
SwissProt Accessions	Q9BQY4, Q9BR00	Gene names	PEPP2, THG1
Domain Architecture
Description	Paired-like homeobox protein PEPP-2 (Testis homeobox gene 1).

PRRXL_MOUSE
NC score	0.850260 (rank : 140)	θ value	3.08544e-08 (rank : 156)
Query Neighborhood Hits	434	Target Neighborhood Hits	350	Shared Neighborhood Hits	334
SwissProt Accessions	Q8BYH0, Q8K3F8	Gene names	Prrxl1, Drg11
Domain Architecture	No domain graphic available
Description	Paired-related homeobox protein-like 1 (Dorsal root ganglion 11) (Homeobox protein DRG11).

HXC12_HUMAN
NC score	0.849632 (rank : 141)	θ value	6.87365e-08 (rank : 171)
Query Neighborhood Hits	434	Target Neighborhood Hits	313	Shared Neighborhood Hits	307
SwissProt Accessions	P31275, Q9BXJ6	Gene names	HOXC12, HOX3F
Domain Architecture
Description	Homeobox protein Hox-C12 (Hox-3F).

GSC_HUMAN
NC score	0.849421 (rank : 142)	θ value	5.81887e-07 (rank : 210)
Query Neighborhood Hits	434	Target Neighborhood Hits	369	Shared Neighborhood Hits	337
SwissProt Accessions	P56915, Q86YR1	Gene names	GSC
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid.

PITX2_HUMAN
NC score	0.849040 (rank : 143)	θ value	1.53129e-07 (rank : 189)
Query Neighborhood Hits	434	Target Neighborhood Hits	381	Shared Neighborhood Hits	339
SwissProt Accessions	Q99697, O60578, O60579, O60580, Q9BY17	Gene names	PITX2, ARP1, RGS, RIEG, RIEG1
Domain Architecture
Description	Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription factor) (Solurshin) (ALL1-responsive protein ARP1).

GSC_MOUSE
NC score	0.848873 (rank : 144)	θ value	3.41135e-07 (rank : 202)
Query Neighborhood Hits	434	Target Neighborhood Hits	368	Shared Neighborhood Hits	334
SwissProt Accessions	Q02591	Gene names	Gsc
Domain Architecture
Description	Homeobox protein goosecoid.

PITX2_MOUSE
NC score	0.848771 (rank : 145)	θ value	2.61198e-07 (rank : 200)
Query Neighborhood Hits	434	Target Neighborhood Hits	383	Shared Neighborhood Hits	338
SwissProt Accessions	P97474, O08646, O70336, P97933, Q9JLA0, Q9QXB8, Q9R1V9, Q9Z141	Gene names	Pitx2, Arp1, Brx1, Otlx2, Ptx2, Rgs
Domain Architecture
Description	Pituitary homeobox 2 (Orthodenticle-like homeobox 2) (Solurshin) (ALL1-responsive protein ARP1) (BRX1 homeoprotein) (Paired-like homeodomain transcription factor Munc 30).

HXC4_HUMAN
NC score	0.848399 (rank : 146)	θ value	2.36244e-08 (rank : 147)
Query Neighborhood Hits	434	Target Neighborhood Hits	361	Shared Neighborhood Hits	321
SwissProt Accessions	P09017	Gene names	HOXC4, HOX3E
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3E) (CP19).

ALX4_MOUSE
NC score	0.848302 (rank : 147)	θ value	6.64225e-11 (rank : 80)
Query Neighborhood Hits	434	Target Neighborhood Hits	369	Shared Neighborhood Hits	337
SwissProt Accessions	O35137	Gene names	Alx4
Domain Architecture
Description	Homeobox protein aristaless-like 4 (ALX-4).

PROP1_MOUSE
NC score	0.848244 (rank : 148)	θ value	1.86753e-13 (rank : 29)
Query Neighborhood Hits	434	Target Neighborhood Hits	361	Shared Neighborhood Hits	333
SwissProt Accessions	P97458	Gene names	Prop1, Prop-1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

PITX1_MOUSE
NC score	0.848140 (rank : 149)	θ value	1.17247e-07 (rank : 184)
Query Neighborhood Hits	434	Target Neighborhood Hits	362	Shared Neighborhood Hits	339
SwissProt Accessions	P70314, O54742, P70427	Gene names	Pitx1, Bft, Potx, Ptx1
Domain Architecture
Description	Pituitary homeobox 1 (Homeobox protein P-OTX) (Pituitary OTX-related factor) (Hindlimb expressed homeobox protein backfoot) (Ptx1).

HXB4_HUMAN
NC score	0.847766 (rank : 150)	θ value	4.45536e-07 (rank : 208)
Query Neighborhood Hits	434	Target Neighborhood Hits	376	Shared Neighborhood Hits	324
SwissProt Accessions	P17483, Q9NTA0	Gene names	HOXB4, HOX2F
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2F) (Hox-2.6).

HXD4_HUMAN
NC score	0.847487 (rank : 151)	θ value	4.76016e-09 (rank : 130)
Query Neighborhood Hits	434	Target Neighborhood Hits	337	Shared Neighborhood Hits	306
SwissProt Accessions	P09016, Q96AU0	Gene names	HOXD4, HOX4B
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4B) (Hox-5.1) (HHO.C13).

PITX1_HUMAN
NC score	0.847370 (rank : 152)	θ value	1.17247e-07 (rank : 183)
Query Neighborhood Hits	434	Target Neighborhood Hits	353	Shared Neighborhood Hits	334
SwissProt Accessions	P78337, O14677, O60425, Q9BTI5	Gene names	PITX1, BFT, PTX1
Domain Architecture
Description	Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot).

ALX4_HUMAN
NC score	0.847118 (rank : 153)	θ value	1.47974e-10 (rank : 86)
Query Neighborhood Hits	434	Target Neighborhood Hits	394	Shared Neighborhood Hits	337
SwissProt Accessions	Q9H161, Q96JN7, Q9H198, Q9HAY9	Gene names	ALX4, KIAA1788
Domain Architecture
Description	Homeobox protein aristaless-like 4.

HXC12_MOUSE
NC score	0.845562 (rank : 154)	θ value	2.61198e-07 (rank : 195)
Query Neighborhood Hits	434	Target Neighborhood Hits	316	Shared Neighborhood Hits	307
SwissProt Accessions	Q8K5B8	Gene names	Hoxc12, Hox-3.8, Hoxc-12
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C12 (Hox-3.8).

HXA7_MOUSE
NC score	0.844262 (rank : 155)	θ value	8.11959e-09 (rank : 136)
Query Neighborhood Hits	434	Target Neighborhood Hits	318	Shared Neighborhood Hits	308
SwissProt Accessions	P02830, Q544P0	Gene names	Hoxa7, Hox-1.1, Hoxa-7
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1.1) (M6-12) (M6).

HXB4_MOUSE
NC score	0.843963 (rank : 156)	θ value	4.45536e-07 (rank : 209)
Query Neighborhood Hits	434	Target Neighborhood Hits	375	Shared Neighborhood Hits	320
SwissProt Accessions	P10284, Q3UZB4, Q4VBG0	Gene names	Hoxb4, Hox-2.6, Hoxb-4
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2.6).

HXD4_MOUSE
NC score	0.843892 (rank : 157)	θ value	3.08544e-08 (rank : 153)
Query Neighborhood Hits	434	Target Neighborhood Hits	339	Shared Neighborhood Hits	306
SwissProt Accessions	P10628, P97451, Q3UXL6	Gene names	Hoxd4, Hox-4.2, Hoxd-4
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4.2) (Hox-5.1).

PRRX2_HUMAN
NC score	0.842730 (rank : 158)	θ value	5.26297e-08 (rank : 167)
Query Neighborhood Hits	434	Target Neighborhood Hits	348	Shared Neighborhood Hits	328
SwissProt Accessions	Q99811, Q9UIB3	Gene names	PRRX2, PMX2, PRX2
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Paired-related homeobox protein 2).

PHX2B_HUMAN
NC score	0.842394 (rank : 159)	θ value	3.08544e-08 (rank : 154)
Query Neighborhood Hits	434	Target Neighborhood Hits	407	Shared Neighborhood Hits	323
SwissProt Accessions	Q99453, Q6PJD9	Gene names	PHOX2B, PMX2B
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

PHX2B_MOUSE
NC score	0.842394 (rank : 160)	θ value	3.08544e-08 (rank : 155)
Query Neighborhood Hits	434	Target Neighborhood Hits	407	Shared Neighborhood Hits	323
SwissProt Accessions	O35690	Gene names	Phox2b, Pmx2b
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

HXB7_HUMAN
NC score	0.840803 (rank : 161)	θ value	1.99992e-07 (rank : 192)
Query Neighborhood Hits	434	Target Neighborhood Hits	311	Shared Neighborhood Hits	308
SwissProt Accessions	P09629, Q15957	Gene names	HOXB7, HOX2C
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2C) (HHO.C1).

HXB7_MOUSE
NC score	0.840473 (rank : 162)	θ value	8.97725e-08 (rank : 177)
Query Neighborhood Hits	434	Target Neighborhood Hits	314	Shared Neighborhood Hits	308
SwissProt Accessions	P09024, Q3UW15	Gene names	Hoxb7, Hox-2.3, Hoxb-7
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2.3) (MUB1) (Homeobox protein MH-22B).

HXA7_HUMAN
NC score	0.839947 (rank : 163)	θ value	2.61198e-07 (rank : 194)
Query Neighborhood Hits	434	Target Neighborhood Hits	309	Shared Neighborhood Hits	307
SwissProt Accessions	P31268, O43368, O43486, O95655, Q9NSC8, Q9UDM1	Gene names	HOXA7, HOX1A
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1).

HXA9_MOUSE
NC score	0.839627 (rank : 164)	θ value	3.08544e-08 (rank : 151)
Query Neighborhood Hits	434	Target Neighborhood Hits	334	Shared Neighborhood Hits	314
SwissProt Accessions	P09631, O70154, O70155	Gene names	Hoxa9, Hox-1.7, Hoxa-9
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1.7).

ALX3_MOUSE
NC score	0.838938 (rank : 165)	θ value	1.33837e-11 (rank : 62)
Query Neighborhood Hits	434	Target Neighborhood Hits	386	Shared Neighborhood Hits	335
SwissProt Accessions	O70137	Gene names	Alx3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

HXA9_HUMAN
NC score	0.838750 (rank : 166)	θ value	3.08544e-08 (rank : 150)
Query Neighborhood Hits	434	Target Neighborhood Hits	332	Shared Neighborhood Hits	314
SwissProt Accessions	P31269, O43369, O43429, Q99820	Gene names	HOXA9, HOX1G
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1G).

HXA5_MOUSE
NC score	0.838672 (rank : 167)	θ value	6.87365e-08 (rank : 170)
Query Neighborhood Hits	434	Target Neighborhood Hits	338	Shared Neighborhood Hits	310
SwissProt Accessions	P09021, Q91VQ5	Gene names	Hoxa5, Hox-1.3, Hoxa-5
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1.3) (M2).

PRRX2_MOUSE
NC score	0.837910 (rank : 168)	θ value	5.26297e-08 (rank : 168)
Query Neighborhood Hits	434	Target Neighborhood Hits	351	Shared Neighborhood Hits	330
SwissProt Accessions	Q06348, Q61651	Gene names	Prrx2, Prx2, S8
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Homeobox protein S8).

HXC6_HUMAN
NC score	0.837777 (rank : 169)	θ value	6.87365e-08 (rank : 172)
Query Neighborhood Hits	434	Target Neighborhood Hits	306	Shared Neighborhood Hits	304
SwissProt Accessions	P09630	Gene names	HOXC6, HOX3C
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3C) (HHO.C8) (CP25).

HXC6_MOUSE
NC score	0.837777 (rank : 170)	θ value	6.87365e-08 (rank : 173)
Query Neighborhood Hits	434	Target Neighborhood Hits	306	Shared Neighborhood Hits	304
SwissProt Accessions	P10629, Q61683	Gene names	Hoxc6, Hox-3.3, Hoxc-6
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3.3) (Hox-6.1).

HXD9_HUMAN
NC score	0.837761 (rank : 171)	θ value	1.63604e-09 (rank : 118)
Query Neighborhood Hits	434	Target Neighborhood Hits	352	Shared Neighborhood Hits	315
SwissProt Accessions	P28356	Gene names	HOXD9, HOX4C
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2).

SHOX2_MOUSE
NC score	0.837357 (rank : 172)	θ value	2.21117e-06 (rank : 222)
Query Neighborhood Hits	434	Target Neighborhood Hits	348	Shared Neighborhood Hits	318
SwissProt Accessions	P70390, P70369	Gene names	Shox2, Og12x, Prx3
Domain Architecture
Description	Short stature homeobox protein 2 (Homeobox protein Og12X) (OG-12) (Paired family homeodomain protein Prx3).

HXA5_HUMAN
NC score	0.837353 (rank : 173)	θ value	2.61198e-07 (rank : 193)
Query Neighborhood Hits	434	Target Neighborhood Hits	336	Shared Neighborhood Hits	309
SwissProt Accessions	P20719, O43367, Q96CY6	Gene names	HOXA5, HOX1C
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1C).

SHOX_HUMAN
NC score	0.837262 (rank : 174)	θ value	2.21117e-06 (rank : 223)
Query Neighborhood Hits	434	Target Neighborhood Hits	363	Shared Neighborhood Hits	320
SwissProt Accessions	O15266, O00412, O00413, O15267	Gene names	SHOX, PHOG
Domain Architecture
Description	Short stature homeobox protein (Short stature homeobox-containing protein) (Pseudoautosomal homeobox-containing osteogenic protein).

ALX3_HUMAN
NC score	0.837115 (rank : 175)	θ value	4.30538e-10 (rank : 100)
Query Neighborhood Hits	434	Target Neighborhood Hits	380	Shared Neighborhood Hits	336
SwissProt Accessions	O95076, O95075	Gene names	ALX3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

SHOX2_HUMAN
NC score	0.837043 (rank : 176)	θ value	2.21117e-06 (rank : 221)
Query Neighborhood Hits	434	Target Neighborhood Hits	353	Shared Neighborhood Hits	318
SwissProt Accessions	O60902, O60465, O60467, O60903	Gene names	SHOX2, OG12X, SHOT
Domain Architecture
Description	Short stature homeobox protein 2 (Paired-related homeobox protein SHOT) (Homeobox protein Og12X).

HXC5_HUMAN
NC score	0.836462 (rank : 177)	θ value	7.59969e-07 (rank : 211)
Query Neighborhood Hits	434	Target Neighborhood Hits	316	Shared Neighborhood Hits	302
SwissProt Accessions	Q00444	Gene names	HOXC5, HOX3D
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3D) (CP11).

HXC5_MOUSE
NC score	0.836012 (rank : 178)	θ value	7.59969e-07 (rank : 212)
Query Neighborhood Hits	434	Target Neighborhood Hits	316	Shared Neighborhood Hits	302
SwissProt Accessions	P32043, Q8BJW4	Gene names	Hoxc5, Hox-3.4, Hoxc-5
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3.4) (Hox-6.2).

GSCL_MOUSE
NC score	0.835976 (rank : 179)	θ value	8.40245e-06 (rank : 233)
Query Neighborhood Hits	434	Target Neighborhood Hits	339	Shared Neighborhood Hits	323
SwissProt Accessions	P56916	Gene names	Gscl
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid-like (GSC-2).

HXB5_HUMAN
NC score	0.835279 (rank : 180)	θ value	3.41135e-07 (rank : 203)
Query Neighborhood Hits	434	Target Neighborhood Hits	332	Shared Neighborhood Hits	307
SwissProt Accessions	P09067, P09069	Gene names	HOXB5, HOX2A
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2A) (HHO.C10) (HU-1).

HXB5_MOUSE
NC score	0.834516 (rank : 181)	θ value	3.41135e-07 (rank : 204)
Query Neighborhood Hits	434	Target Neighborhood Hits	337	Shared Neighborhood Hits	307
SwissProt Accessions	P09079, Q3ZAY8	Gene names	Hoxb5, Hox-2.1, Hoxb-5
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2.1) (MU-1) (H24.1).

HXD9_MOUSE
NC score	0.833204 (rank : 182)	θ value	8.11959e-09 (rank : 139)
Query Neighborhood Hits	434	Target Neighborhood Hits	359	Shared Neighborhood Hits	314
SwissProt Accessions	P28357, Q3UYS2	Gene names	Hoxd9, Hox-4.4, Hoxd-9
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4.4) (Hox-5.2).

CART1_HUMAN
NC score	0.832987 (rank : 183)	θ value	5.26297e-08 (rank : 164)
Query Neighborhood Hits	434	Target Neighborhood Hits	348	Shared Neighborhood Hits	330
SwissProt Accessions	Q15699, Q546C8, Q96FH4	Gene names	CART1
Domain Architecture
Description	Cartilage homeoprotein 1 (CART-1).

CART1_MOUSE
NC score	0.832979 (rank : 184)	θ value	5.26297e-08 (rank : 165)
Query Neighborhood Hits	434	Target Neighborhood Hits	344	Shared Neighborhood Hits	329
SwissProt Accessions	Q8C8B0, Q8C370	Gene names	Cart1
Domain Architecture	No domain graphic available
Description	Cartilage homeoprotein 1 (CART-1).

HXB8_MOUSE
NC score	0.832890 (rank : 185)	θ value	4.76016e-09 (rank : 129)
Query Neighborhood Hits	434	Target Neighborhood Hits	325	Shared Neighborhood Hits	318
SwissProt Accessions	P09632	Gene names	Hoxb8, Hox-2.4, Hoxb-8
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2.4).

HXB8_HUMAN
NC score	0.832811 (rank : 186)	θ value	4.76016e-09 (rank : 128)
Query Neighborhood Hits	434	Target Neighborhood Hits	324	Shared Neighborhood Hits	317
SwissProt Accessions	P17481, Q9H1I2	Gene names	HOXB8, HOX2D
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4).

PRRX1_HUMAN
NC score	0.831769 (rank : 187)	θ value	4.0297e-08 (rank : 162)
Query Neighborhood Hits	434	Target Neighborhood Hits	347	Shared Neighborhood Hits	331
SwissProt Accessions	P54821, O60807	Gene names	PRRX1, PMX1
Domain Architecture
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein PHOX1).

PRRX1_MOUSE
NC score	0.831713 (rank : 188)	θ value	4.0297e-08 (rank : 163)
Query Neighborhood Hits	434	Target Neighborhood Hits	346	Shared Neighborhood Hits	329
SwissProt Accessions	P63013, P43271, Q02810	Gene names	Prrx1, Pmx, Pmx1
Domain Architecture	No domain graphic available
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein mHox) (Homeobox protein K-2).

HXA6_HUMAN
NC score	0.831010 (rank : 189)	θ value	3.64472e-09 (rank : 125)
Query Neighborhood Hits	434	Target Neighborhood Hits	309	Shared Neighborhood Hits	306
SwissProt Accessions	P31267, Q9UPM0	Gene names	HOXA6, HOX1B
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A6 (Hox-1B).

HXC8_MOUSE
NC score	0.830983 (rank : 190)	θ value	8.11959e-09 (rank : 138)
Query Neighborhood Hits	434	Target Neighborhood Hits	327	Shared Neighborhood Hits	313
SwissProt Accessions	P09025	Gene names	Hoxc8, Hox-3.1, Hoxc-8
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3.1) (M31).

HXC8_HUMAN
NC score	0.830906 (rank : 191)	θ value	8.11959e-09 (rank : 137)
Query Neighborhood Hits	434	Target Neighborhood Hits	327	Shared Neighborhood Hits	313
SwissProt Accessions	P31273, O15221, O15362	Gene names	HOXC8, HOX3A
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3A).

HXB6_MOUSE
NC score	0.830702 (rank : 192)	θ value	3.41135e-07 (rank : 206)
Query Neighborhood Hits	434	Target Neighborhood Hits	309	Shared Neighborhood Hits	302
SwissProt Accessions	P09023	Gene names	Hoxb6, Hox-2.2, Hoxb-6
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2.2) (Homeobox protein MH-22A).

HXB6_HUMAN
NC score	0.830396 (rank : 193)	θ value	3.41135e-07 (rank : 205)
Query Neighborhood Hits	434	Target Neighborhood Hits	307	Shared Neighborhood Hits	302
SwissProt Accessions	P17509, P09068, Q9HB11, Q9UGH2	Gene names	HOXB6, HOX2B
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2).

HXA6_MOUSE
NC score	0.829837 (rank : 194)	θ value	1.38499e-08 (rank : 144)
Query Neighborhood Hits	434	Target Neighborhood Hits	304	Shared Neighborhood Hits	302
SwissProt Accessions	P09092, Q9JI98	Gene names	Hoxa6, Hox-1.2, Hoxa-6
Domain Architecture
Description	Homeobox protein Hox-A6 (Hox-1.2) (M5-4).

HXC9_MOUSE
NC score	0.829829 (rank : 195)	θ value	2.0648e-12 (rank : 45)
Query Neighborhood Hits	434	Target Neighborhood Hits	338	Shared Neighborhood Hits	313
SwissProt Accessions	P09633	Gene names	Hoxc9, Hox-3.2, Hoxc-9
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3.2).

HXC9_HUMAN
NC score	0.829796 (rank : 196)	θ value	2.0648e-12 (rank : 44)
Query Neighborhood Hits	434	Target Neighborhood Hits	339	Shared Neighborhood Hits	313
SwissProt Accessions	P31274, Q9H1I0	Gene names	HOXC9, HOX3B
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3B).

HXD10_HUMAN
NC score	0.828929 (rank : 197)	θ value	3.08544e-08 (rank : 152)
Query Neighborhood Hits	434	Target Neighborhood Hits	392	Shared Neighborhood Hits	319
SwissProt Accessions	P28358	Gene names	HOXD10, HOX4D
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4D) (Hox-4E).

HXD8_MOUSE
NC score	0.828928 (rank : 198)	θ value	4.0297e-08 (rank : 159)
Query Neighborhood Hits	434	Target Neighborhood Hits	333	Shared Neighborhood Hits	316
SwissProt Accessions	P23463	Gene names	Hoxd8, Hox-4.3, Hoxd-8
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4).

HXD8_HUMAN
NC score	0.828806 (rank : 199)	θ value	4.0297e-08 (rank : 158)
Query Neighborhood Hits	434	Target Neighborhood Hits	338	Shared Neighborhood Hits	318
SwissProt Accessions	P13378	Gene names	HOXD8, HOX4E
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4).

HXA10_HUMAN
NC score	0.828740 (rank : 200)	θ value	1.99992e-07 (rank : 190)
Query Neighborhood Hits	434	Target Neighborhood Hits	334	Shared Neighborhood Hits	304
SwissProt Accessions	P31260, O43370, O43605, Q15949	Gene names	HOXA10, HOX1H
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL).

HXD10_MOUSE
NC score	0.828290 (rank : 201)	θ value	2.36244e-08 (rank : 148)
Query Neighborhood Hits	434	Target Neighborhood Hits	392	Shared Neighborhood Hits	319
SwissProt Accessions	P28359, Q91WU9	Gene names	Hoxd10, Hox-4.5, Hoxd-10
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4.5) (Hox-5.3).

HXA10_MOUSE
NC score	0.827301 (rank : 202)	θ value	1.99992e-07 (rank : 191)
Query Neighborhood Hits	434	Target Neighborhood Hits	365	Shared Neighborhood Hits	307
SwissProt Accessions	P31310, Q80Y22	Gene names	Hoxa10, Hox-1.8, Hoxa-10
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1.8).

HXC10_HUMAN
NC score	0.827252 (rank : 203)	θ value	1.17247e-07 (rank : 181)
Query Neighborhood Hits	434	Target Neighborhood Hits	417	Shared Neighborhood Hits	314
SwissProt Accessions	Q9NYD6, O15219, O15220, Q9BVD5	Gene names	HOXC10
Domain Architecture
Description	Homeobox protein Hox-C10.

OTX1_HUMAN
NC score	0.827170 (rank : 204)	θ value	2.13673e-09 (rank : 120)
Query Neighborhood Hits	434	Target Neighborhood Hits	379	Shared Neighborhood Hits	320
SwissProt Accessions	P32242, Q53TG6	Gene names	OTX1
Domain Architecture
Description	Homeobox protein OTX1.

HXC10_MOUSE
NC score	0.826537 (rank : 205)	θ value	1.17247e-07 (rank : 182)
Query Neighborhood Hits	434	Target Neighborhood Hits	417	Shared Neighborhood Hits	313
SwissProt Accessions	P31257, P31312, Q7TMT7	Gene names	Hoxc10, Hox-3.6, Hoxc-10
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C10 (Hox-3.6).

HXA13_MOUSE
NC score	0.826505 (rank : 206)	θ value	9.92553e-07 (rank : 213)
Query Neighborhood Hits	434	Target Neighborhood Hits	351	Shared Neighborhood Hits	322
SwissProt Accessions	Q62424	Gene names	Hoxa13, Hox-1.10
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1.10).

CRX_HUMAN
NC score	0.826176 (rank : 207)	θ value	4.0297e-08 (rank : 157)
Query Neighborhood Hits	434	Target Neighborhood Hits	360	Shared Neighborhood Hits	325
SwissProt Accessions	O43186	Gene names	CRX, CORD2
Domain Architecture
Description	Cone-rod homeobox protein.

HXB9_HUMAN
NC score	0.825356 (rank : 208)	θ value	1.53129e-07 (rank : 186)
Query Neighborhood Hits	434	Target Neighborhood Hits	344	Shared Neighborhood Hits	316
SwissProt Accessions	P17482, Q9H1I1	Gene names	HOXB9, HOX2E
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5).

CRX_MOUSE
NC score	0.825233 (rank : 209)	θ value	2.36244e-08 (rank : 146)
Query Neighborhood Hits	434	Target Neighborhood Hits	359	Shared Neighborhood Hits	323
SwissProt Accessions	O54751	Gene names	Crx
Domain Architecture
Description	Cone-rod homeobox protein.

HXB9_MOUSE
NC score	0.824977 (rank : 210)	θ value	1.53129e-07 (rank : 187)
Query Neighborhood Hits	434	Target Neighborhood Hits	344	Shared Neighborhood Hits	313
SwissProt Accessions	P20615	Gene names	Hoxb9, Hox-2.5, Hoxb-9
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2.5).

HXA13_HUMAN
NC score	0.824568 (rank : 211)	θ value	2.88788e-06 (rank : 225)
Query Neighborhood Hits	434	Target Neighborhood Hits	353	Shared Neighborhood Hits	322
SwissProt Accessions	P31271, O43371	Gene names	HOXA13, HOX1J
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1J).

OTX1_MOUSE
NC score	0.822392 (rank : 212)	θ value	1.63604e-09 (rank : 119)
Query Neighborhood Hits	434	Target Neighborhood Hits	372	Shared Neighborhood Hits	321
SwissProt Accessions	P80205	Gene names	Otx1, Otx-1
Domain Architecture
Description	Homeobox protein OTX1.

HXC13_HUMAN
NC score	0.820728 (rank : 213)	θ value	8.97725e-08 (rank : 178)
Query Neighborhood Hits	434	Target Neighborhood Hits	336	Shared Neighborhood Hits	323
SwissProt Accessions	P31276, Q96J32, Q9NR24, Q9NYD5	Gene names	HOXC13, HOX3G
Domain Architecture
Description	Homeobox protein Hox-C13 (Hox-3G).

HXC13_MOUSE
NC score	0.820601 (rank : 214)	θ value	8.97725e-08 (rank : 179)
Query Neighborhood Hits	434	Target Neighborhood Hits	337	Shared Neighborhood Hits	323
SwissProt Accessions	P50207, Q53Z78, Q920I7	Gene names	Hoxc13, Hoxc-13
Domain Architecture
Description	Homeobox protein Hox-C13.

VSX1_MOUSE
NC score	0.817215 (rank : 215)	θ value	5.26297e-08 (rank : 169)
Query Neighborhood Hits	434	Target Neighborhood Hits	356	Shared Neighborhood Hits	311
SwissProt Accessions	Q91V10	Gene names	Vsx1, Rinx
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

HXB13_MOUSE
NC score	0.814137 (rank : 216)	θ value	2.88788e-06 (rank : 226)
Query Neighborhood Hits	434	Target Neighborhood Hits	384	Shared Neighborhood Hits	324
SwissProt Accessions	P70321, Q80Y12	Gene names	Hoxb13
Domain Architecture
Description	Homeobox protein Hox-B13.

CHX10_MOUSE
NC score	0.814036 (rank : 217)	θ value	1.69304e-06 (rank : 218)
Query Neighborhood Hits	434	Target Neighborhood Hits	340	Shared Neighborhood Hits	315
SwissProt Accessions	Q61412	Gene names	Chx10, Vsx2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

CHX10_HUMAN
NC score	0.813696 (rank : 218)	θ value	1.69304e-06 (rank : 217)
Query Neighborhood Hits	434	Target Neighborhood Hits	340	Shared Neighborhood Hits	315
SwissProt Accessions	P58304	Gene names	CHX10, VSX2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

HXB13_HUMAN
NC score	0.811652 (rank : 219)	θ value	1.69304e-06 (rank : 219)
Query Neighborhood Hits	434	Target Neighborhood Hits	377	Shared Neighborhood Hits	327
SwissProt Accessions	Q92826, Q96QM4, Q99810	Gene names	HOXB13
Domain Architecture
Description	Homeobox protein Hox-B13.

VSX1_HUMAN
NC score	0.807015 (rank : 220)	θ value	2.44474e-05 (rank : 242)
Query Neighborhood Hits	434	Target Neighborhood Hits	344	Shared Neighborhood Hits	314
SwissProt Accessions	Q9NZR4, Q5TF40, Q5TF41, Q9HCU3, Q9NU27	Gene names	VSX1, RINX
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

HXD13_HUMAN
NC score	0.806000 (rank : 221)	θ value	2.44474e-05 (rank : 240)
Query Neighborhood Hits	434	Target Neighborhood Hits	332	Shared Neighborhood Hits	317
SwissProt Accessions	P35453	Gene names	HOXD13, HOX4I
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4I).

HXD13_MOUSE
NC score	0.805462 (rank : 222)	θ value	2.44474e-05 (rank : 241)
Query Neighborhood Hits	434	Target Neighborhood Hits	324	Shared Neighborhood Hits	315
SwissProt Accessions	P70217, Q2VPB0, Q2VPB1, Q64177	Gene names	Hoxd13, Hox-4.8
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4.8).

OTX2_MOUSE
NC score	0.800739 (rank : 223)	θ value	2.61198e-07 (rank : 197)
Query Neighborhood Hits	434	Target Neighborhood Hits	345	Shared Neighborhood Hits	322
SwissProt Accessions	P80206	Gene names	Otx2, Otx-2
Domain Architecture
Description	Homeobox protein OTX2.

OTX2_HUMAN
NC score	0.800151 (rank : 224)	θ value	3.41135e-07 (rank : 207)
Query Neighborhood Hits	434	Target Neighborhood Hits	341	Shared Neighborhood Hits	319
SwissProt Accessions	P32243, Q6GTV3, Q9HAW3, Q9P2R1	Gene names	OTX2
Domain Architecture
Description	Homeobox protein OTX2.

DUX1_HUMAN
NC score	0.798449 (rank : 225)	θ value	1.29631e-06 (rank : 214)
Query Neighborhood Hits	434	Target Neighborhood Hits	330	Shared Neighborhood Hits	321
SwissProt Accessions	O43812	Gene names	DUX1
Domain Architecture	No domain graphic available
Description	Double homeobox protein 1.

DUX5_HUMAN
NC score	0.793988 (rank : 226)	θ value	1.29631e-06 (rank : 215)
Query Neighborhood Hits	434	Target Neighborhood Hits	330	Shared Neighborhood Hits	321
SwissProt Accessions	Q96PT3	Gene names	DUX5
Domain Architecture	No domain graphic available
Description	Double homeobox protein 5.

DUX3_HUMAN
NC score	0.793618 (rank : 227)	θ value	3.41135e-07 (rank : 201)
Query Neighborhood Hits	434	Target Neighborhood Hits	312	Shared Neighborhood Hits	307
SwissProt Accessions	Q96PT4, Q9UND2	Gene names	DUX3
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 3.

DUX4_HUMAN
NC score	0.766153 (rank : 228)	θ value	8.40245e-06 (rank : 232)
Query Neighborhood Hits	434	Target Neighborhood Hits	403	Shared Neighborhood Hits	327
SwissProt Accessions	Q9UBX2	Gene names	DUX4, DUX10
Domain Architecture	No domain graphic available
Description	Double homeobox protein 4 (Double homeobox protein 10) (Double homeobox protein 4/10).

PAX4_MOUSE
NC score	0.741565 (rank : 229)	θ value	1.09739e-05 (rank : 235)
Query Neighborhood Hits	434	Target Neighborhood Hits	370	Shared Neighborhood Hits	331
SwissProt Accessions	P32115, P97341, Q9QUR1, Q9R091	Gene names	Pax4, Pax-4
Domain Architecture
Description	Paired box protein Pax-4.

PAX4_HUMAN
NC score	0.740981 (rank : 230)	θ value	5.44631e-05 (rank : 246)
Query Neighborhood Hits	434	Target Neighborhood Hits	367	Shared Neighborhood Hits	333
SwissProt Accessions	O43316, O95161, Q6B0H0	Gene names	PAX4
Domain Architecture
Description	Paired box protein Pax-4.

PAX3_HUMAN
NC score	0.740195 (rank : 231)	θ value	9.59137e-10 (rank : 111)
Query Neighborhood Hits	434	Target Neighborhood Hits	513	Shared Neighborhood Hits	344
SwissProt Accessions	P23760, Q16448	Gene names	PAX3, HUP2
Domain Architecture
Description	Paired box protein Pax-3 (HUP2).

PAX3_MOUSE
NC score	0.740048 (rank : 232)	θ value	5.62301e-10 (rank : 104)
Query Neighborhood Hits	434	Target Neighborhood Hits	478	Shared Neighborhood Hits	340
SwissProt Accessions	P24610, Q3UFQ9, Q8BRE7, Q9CXI6	Gene names	Pax3, Pax-3
Domain Architecture
Description	Paired box protein Pax-3.

PAX7_HUMAN
NC score	0.737983 (rank : 233)	θ value	1.29631e-06 (rank : 216)
Query Neighborhood Hits	434	Target Neighborhood Hits	456	Shared Neighborhood Hits	350
SwissProt Accessions	P23759	Gene names	PAX7, HUP1
Domain Architecture
Description	Paired box protein Pax-7 (HUP1).

PAX7_MOUSE
NC score	0.736624 (rank : 234)	θ value	2.21117e-06 (rank : 220)
Query Neighborhood Hits	434	Target Neighborhood Hits	422	Shared Neighborhood Hits	344
SwissProt Accessions	P47239, Q9ES16	Gene names	Pax7, Pax-7
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-7.

PAX6_HUMAN
NC score	0.723481 (rank : 235)	θ value	2.61198e-07 (rank : 198)
Query Neighborhood Hits	434	Target Neighborhood Hits	383	Shared Neighborhood Hits	328
SwissProt Accessions	P26367, Q6N006, Q99413	Gene names	PAX6, AN2
Domain Architecture
Description	Paired box protein Pax-6 (Oculorhombin) (Aniridia type II protein).

PAX6_MOUSE
NC score	0.723481 (rank : 236)	θ value	2.61198e-07 (rank : 199)
Query Neighborhood Hits	434	Target Neighborhood Hits	383	Shared Neighborhood Hits	328
SwissProt Accessions	P63015, P32117, P70601, Q62222, Q64037, Q8CEI5, Q8VDB5, Q921Q8	Gene names	Pax6, Pax-6, Sey
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-6 (Oculorhombin).

ZFHX2_HUMAN
NC score	0.577641 (rank : 237)	θ value	0.000121331 (rank : 252)
Query Neighborhood Hits	434	Target Neighborhood Hits	1178	Shared Neighborhood Hits	338
SwissProt Accessions	Q9C0A1	Gene names	ZFHX2, KIAA1762
Domain Architecture
Description	Zinc finger homeobox protein 2.

LHX3_HUMAN
NC score	0.536314 (rank : 238)	θ value	0.000602161 (rank : 261)
Query Neighborhood Hits	434	Target Neighborhood Hits	474	Shared Neighborhood Hits	338
SwissProt Accessions	Q9UBR4, Q9NZB5, Q9P0I8, Q9P0I9	Gene names	LHX3
Domain Architecture
Description	LIM/homeobox protein Lhx3.

LHX4_HUMAN
NC score	0.533676 (rank : 239)	θ value	0.000270298 (rank : 255)
Query Neighborhood Hits	434	Target Neighborhood Hits	455	Shared Neighborhood Hits	333
SwissProt Accessions	Q969G2, Q8NHE0, Q8TCJ1, Q8WWX2, Q969W2	Gene names	LHX4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

LHX4_MOUSE
NC score	0.533198 (rank : 240)	θ value	0.000270298 (rank : 256)
Query Neighborhood Hits	434	Target Neighborhood Hits	457	Shared Neighborhood Hits	333
SwissProt Accessions	P53776, O08916, Q9R280	Gene names	Lhx4, Gsh-4, Gsh4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

LHX5_HUMAN
NC score	0.533019 (rank : 241)	θ value	1.87187e-05 (rank : 239)
Query Neighborhood Hits	434	Target Neighborhood Hits	453	Shared Neighborhood Hits	323
SwissProt Accessions	Q9H2C1	Gene names	LHX5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

LHX5_MOUSE
NC score	0.532534 (rank : 242)	θ value	6.43352e-06 (rank : 231)
Query Neighborhood Hits	434	Target Neighborhood Hits	456	Shared Neighborhood Hits	323
SwissProt Accessions	P61375, P50459	Gene names	Lhx5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

LHX6_MOUSE
NC score	0.532493 (rank : 243)	θ value	9.29e-05 (rank : 250)
Query Neighborhood Hits	434	Target Neighborhood Hits	399	Shared Neighborhood Hits	303
SwissProt Accessions	O88706	Gene names	Lhx6
Domain Architecture
Description	LIM/homeobox protein Lhx6.

LHX61_HUMAN
NC score	0.531236 (rank : 244)	θ value	1.43324e-05 (rank : 237)
Query Neighborhood Hits	434	Target Neighborhood Hits	412	Shared Neighborhood Hits	305
SwissProt Accessions	Q9UPM6, Q5T7S8, Q9NTK3, Q9UPM5	Gene names	LHX6, LHX6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1 (Lhx6).

LHX3_MOUSE
NC score	0.530548 (rank : 245)	θ value	0.000602161 (rank : 262)
Query Neighborhood Hits	434	Target Neighborhood Hits	451	Shared Neighborhood Hits	329
SwissProt Accessions	P50481, Q61800, Q61801	Gene names	Lhx3, Lim-3, Lim3, Plim
Domain Architecture
Description	LIM/homeobox protein Lhx3 (Homeobox protein LIM-3) (Homeobox protein P-LIM) (LIM homeobox protein 3).

DUX2_HUMAN
NC score	0.529785 (rank : 246)	θ value	0.0148317 (rank : 286)
Query Neighborhood Hits	434	Target Neighborhood Hits	173	Shared Neighborhood Hits	171
SwissProt Accessions	O75505	Gene names	DUX2
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 2.

LMX1A_HUMAN
NC score	0.529001 (rank : 247)	θ value	3.19293e-05 (rank : 243)
Query Neighborhood Hits	434	Target Neighborhood Hits	406	Shared Neighborhood Hits	308
SwissProt Accessions	Q8TE12, Q8TE11	Gene names	LMX1A
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

LMX1A_MOUSE
NC score	0.527726 (rank : 248)	θ value	3.19293e-05 (rank : 244)
Query Neighborhood Hits	434	Target Neighborhood Hits	405	Shared Neighborhood Hits	307
SwissProt Accessions	Q9JKU8	Gene names	Lmx1a
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

LHX1_MOUSE
NC score	0.527496 (rank : 249)	θ value	0.000786445 (rank : 263)
Query Neighborhood Hits	434	Target Neighborhood Hits	453	Shared Neighborhood Hits	323
SwissProt Accessions	P63006, P36199	Gene names	Lhx1, Lim-1, Lim1
Domain Architecture	No domain graphic available
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

LHX1_HUMAN
NC score	0.527001 (rank : 250)	θ value	0.000461057 (rank : 259)
Query Neighborhood Hits	434	Target Neighborhood Hits	453	Shared Neighborhood Hits	323
SwissProt Accessions	P48742, Q3MIW0	Gene names	LHX1, LIM1
Domain Architecture
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

LHX2_HUMAN
NC score	0.526156 (rank : 251)	θ value	0.00175202 (rank : 270)
Query Neighborhood Hits	434	Target Neighborhood Hits	432	Shared Neighborhood Hits	308
SwissProt Accessions	P50458, O95860, Q8N1Z3	Gene names	LHX2, LH2
Domain Architecture
Description	LIM/homeobox protein Lhx2 (Homeobox protein LH-2).

LHX2_MOUSE
NC score	0.524252 (rank : 252)	θ value	0.00102713 (rank : 266)
Query Neighborhood Hits	434	Target Neighborhood Hits	431	Shared Neighborhood Hits	308
SwissProt Accessions	Q9Z0S2	Gene names	Lhx2
Domain Architecture
Description	LIM/homeobox protein Lhx2.

PO6F2_MOUSE
NC score	0.523186 (rank : 253)	θ value	3.77169e-06 (rank : 229)
Query Neighborhood Hits	434	Target Neighborhood Hits	639	Shared Neighborhood Hits	317
SwissProt Accessions	Q8BJI4	Gene names	Pou6f2
Domain Architecture	No domain graphic available
Description	POU domain, class 6, transcription factor 2.

PO6F2_HUMAN
NC score	0.521687 (rank : 254)	θ value	1.09739e-05 (rank : 236)
Query Neighborhood Hits	434	Target Neighborhood Hits	618	Shared Neighborhood Hits	312
SwissProt Accessions	P78424, P78425, Q75ME8, Q86UM6, Q9UDS7	Gene names	POU6F2, RPF1
Domain Architecture
Description	POU domain, class 6, transcription factor 2 (Retina-derived POU-domain factor 1) (RPF-1).

LHX9_HUMAN
NC score	0.509560 (rank : 255)	θ value	0.00509761 (rank : 274)
Query Neighborhood Hits	434	Target Neighborhood Hits	444	Shared Neighborhood Hits	309
SwissProt Accessions	Q9NQ69, Q5VUE3, Q9BYU6, Q9NQ70	Gene names	LHX9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

LMX1B_MOUSE
NC score	0.509393 (rank : 256)	θ value	2.88788e-06 (rank : 228)
Query Neighborhood Hits	434	Target Neighborhood Hits	394	Shared Neighborhood Hits	303
SwissProt Accessions	O88609	Gene names	Lmx1b
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

LMX1B_HUMAN
NC score	0.509333 (rank : 257)	θ value	2.88788e-06 (rank : 227)
Query Neighborhood Hits	434	Target Neighborhood Hits	404	Shared Neighborhood Hits	305
SwissProt Accessions	O60663, O75463	Gene names	LMX1B
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

LHX9_MOUSE
NC score	0.509085 (rank : 258)	θ value	0.0193708 (rank : 294)
Query Neighborhood Hits	434	Target Neighborhood Hits	445	Shared Neighborhood Hits	309
SwissProt Accessions	Q9WUH2, Q9QYQ5, Q9QYQ6, Q9QZ00, Q9WU44	Gene names	Lhx9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

LHX8_MOUSE
NC score	0.506149 (rank : 259)	θ value	7.1131e-05 (rank : 248)
Query Neighborhood Hits	434	Target Neighborhood Hits	406	Shared Neighborhood Hits	304
SwissProt Accessions	O35652, O70163, O88707	Gene names	Lhx8, Lhx7
Domain Architecture
Description	LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3).

LHX61_MOUSE
NC score	0.498512 (rank : 260)	θ value	9.29e-05 (rank : 249)
Query Neighborhood Hits	434	Target Neighborhood Hits	396	Shared Neighborhood Hits	288
SwissProt Accessions	Q9R1R0, Q9R1R1	Gene names	Lhx6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1.

PO6F1_HUMAN
NC score	0.495455 (rank : 261)	θ value	0.00035302 (rank : 257)
Query Neighborhood Hits	434	Target Neighborhood Hits	370	Shared Neighborhood Hits	311
SwissProt Accessions	Q14863	Gene names	POU6F1, BRN5, MPOU, TCFB1
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (mPOU homeobox protein) (Brain-specific homeobox/POU domain protein 5) (Brain-5) (Brn-5 protein).

PO6F1_MOUSE
NC score	0.480260 (rank : 262)	θ value	0.00035302 (rank : 258)
Query Neighborhood Hits	434	Target Neighborhood Hits	581	Shared Neighborhood Hits	324
SwissProt Accessions	Q07916, Q91XK3	Gene names	Pou6f1, Emb
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (Octamer-binding transcription factor EMB) (Transcription regulatory protein MCP-1).

PO2F3_MOUSE
NC score	0.442117 (rank : 263)	θ value	0.000158464 (rank : 253)
Query Neighborhood Hits	434	Target Neighborhood Hits	328	Shared Neighborhood Hits	295
SwissProt Accessions	P31362	Gene names	Pou2f3, Epoc1, Oct11, Otf-11, Otf11
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Epoc-1).

PO2F3_HUMAN
NC score	0.438306 (rank : 264)	θ value	0.00134147 (rank : 268)
Query Neighborhood Hits	434	Target Neighborhood Hits	319	Shared Neighborhood Hits	292
SwissProt Accessions	Q9UKI9, Q9UKR7, Q9Y504	Gene names	POU2F3, OTF11, PLA1
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Transcription factor Skn-1) (PLA-1 protein).

PO2F2_HUMAN
NC score	0.434693 (rank : 265)	θ value	0.000786445 (rank : 264)
Query Neighborhood Hits	434	Target Neighborhood Hits	379	Shared Neighborhood Hits	297
SwissProt Accessions	P09086, Q16648, Q9BRS4	Gene names	POU2F2, OCT2, OTF2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

PO2F2_MOUSE
NC score	0.433837 (rank : 266)	θ value	0.00298849 (rank : 273)
Query Neighborhood Hits	434	Target Neighborhood Hits	353	Shared Neighborhood Hits	292
SwissProt Accessions	Q00196, Q00197, Q00198, Q00199, Q00200, Q00201, Q05882, Q61995, Q61996, Q64245	Gene names	Pou2f2, Oct2, Otf2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

ISL1_HUMAN
NC score	0.431919 (rank : 267)	θ value	0.00869519 (rank : 278)
Query Neighborhood Hits	434	Target Neighborhood Hits	421	Shared Neighborhood Hits	314
SwissProt Accessions	P61371, P20663, P47894	Gene names	ISL1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

ISL1_MOUSE
NC score	0.431919 (rank : 268)	θ value	0.00869519 (rank : 279)
Query Neighborhood Hits	434	Target Neighborhood Hits	421	Shared Neighborhood Hits	314
SwissProt Accessions	P61372, P20663, P47894, Q812D8	Gene names	Isl1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

ISL2_MOUSE
NC score	0.430514 (rank : 269)	θ value	0.0113563 (rank : 281)
Query Neighborhood Hits	434	Target Neighborhood Hits	426	Shared Neighborhood Hits	310
SwissProt Accessions	Q9CXV0	Gene names	Isl2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

ISL2_HUMAN
NC score	0.429638 (rank : 270)	θ value	0.0193708 (rank : 293)
Query Neighborhood Hits	434	Target Neighborhood Hits	435	Shared Neighborhood Hits	318
SwissProt Accessions	Q96A47	Gene names	ISL2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

PO2F1_HUMAN
NC score	0.429382 (rank : 271)	θ value	0.0193708 (rank : 295)
Query Neighborhood Hits	434	Target Neighborhood Hits	426	Shared Neighborhood Hits	309
SwissProt Accessions	P14859, Q5TBT7, Q6PK46, Q8NEU9, Q9BPV1	Gene names	POU2F1, OCT1, OTF1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

PIT1_HUMAN
NC score	0.419522 (rank : 272)	θ value	0.0736092 (rank : 301)
Query Neighborhood Hits	434	Target Neighborhood Hits	292	Shared Neighborhood Hits	273
SwissProt Accessions	P28069, O75757, Q15132, Q15133, Q9UEL3	Gene names	POU1F1, GHF1, PIT1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

PO2F1_MOUSE
NC score	0.416845 (rank : 273)	θ value	0.0113563 (rank : 282)
Query Neighborhood Hits	434	Target Neighborhood Hits	408	Shared Neighborhood Hits	301
SwissProt Accessions	P25425, Q61994, Q63891, Q6Y681, Q7TSD0, Q8BT04, Q8K570, Q99JH0, Q9WTZ4, Q9WTZ5, Q9WTZ6	Gene names	Pou2f1, Oct-1, Otf-1, Otf1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

PIT1_MOUSE
NC score	0.409953 (rank : 274)	θ value	0.0961366 (rank : 307)
Query Neighborhood Hits	434	Target Neighborhood Hits	313	Shared Neighborhood Hits	288
SwissProt Accessions	Q00286	Gene names	Pou1f1, Pit-1, Pit1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

SIX2_MOUSE
NC score	0.398681 (rank : 275)	θ value	0.00102713 (rank : 267)
Query Neighborhood Hits	434	Target Neighborhood Hits	376	Shared Neighborhood Hits	316
SwissProt Accessions	Q62232, P70179	Gene names	Six2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

ATBF1_HUMAN
NC score	0.396974 (rank : 276)	θ value	0.0148317 (rank : 283)
Query Neighborhood Hits	434	Target Neighborhood Hits	1547	Shared Neighborhood Hits	343
SwissProt Accessions	Q15911, O15101, Q13719	Gene names	ATBF1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

ATBF1_MOUSE
NC score	0.394087 (rank : 277)	θ value	0.0148317 (rank : 284)
Query Neighborhood Hits	434	Target Neighborhood Hits	1841	Shared Neighborhood Hits	351
SwissProt Accessions	Q61329	Gene names	Atbf1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

SIX4_MOUSE
NC score	0.389635 (rank : 278)	θ value	0.0563607 (rank : 300)
Query Neighborhood Hits	434	Target Neighborhood Hits	341	Shared Neighborhood Hits	281
SwissProt Accessions	Q61321, Q61322, Q61323	Gene names	Six4, Arec3
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4) (Skeletal muscle-specific ARE-binding protein AREC3).

SIX2_HUMAN
NC score	0.378877 (rank : 279)	θ value	0.00134147 (rank : 269)
Query Neighborhood Hits	434	Target Neighborhood Hits	345	Shared Neighborhood Hits	295
SwissProt Accessions	Q9NPC8, Q9BXH7	Gene names	SIX2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

PBX2_MOUSE
NC score	0.375171 (rank : 280)	θ value	0.365318 (rank : 324)
Query Neighborhood Hits	434	Target Neighborhood Hits	341	Shared Neighborhood Hits	293
SwissProt Accessions	O35984	Gene names	Pbx2
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2).

SIX4_HUMAN
NC score	0.374413 (rank : 281)	θ value	0.0563607 (rank : 299)
Query Neighborhood Hits	434	Target Neighborhood Hits	342	Shared Neighborhood Hits	278
SwissProt Accessions	Q9UIU6	Gene names	SIX4
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4).

PBX2_HUMAN
NC score	0.374281 (rank : 282)	θ value	0.365318 (rank : 323)
Query Neighborhood Hits	434	Target Neighborhood Hits	350	Shared Neighborhood Hits	293
SwissProt Accessions	P40425	Gene names	PBX2, G17
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2) (Protein G17).

SIX1_MOUSE
NC score	0.372453 (rank : 283)	θ value	0.0148317 (rank : 292)
Query Neighborhood Hits	434	Target Neighborhood Hits	341	Shared Neighborhood Hits	307
SwissProt Accessions	Q62231, Q8CIL7	Gene names	Six1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

SIX1_HUMAN
NC score	0.372232 (rank : 284)	θ value	0.0148317 (rank : 291)
Query Neighborhood Hits	434	Target Neighborhood Hits	343	Shared Neighborhood Hits	307
SwissProt Accessions	Q15475, Q96H64	Gene names	SIX1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

PBX4_MOUSE
NC score	0.358224 (rank : 285)	θ value	5.27518 (rank : 394)
Query Neighborhood Hits	434	Target Neighborhood Hits	324	Shared Neighborhood Hits	283
SwissProt Accessions	Q99NE9, Q8CFL2, Q99NE8	Gene names	Pbx4
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 4 (Homeobox protein PBX4).

PO4F1_MOUSE
NC score	0.356773 (rank : 286)	θ value	4.03905 (rank : 382)
Query Neighborhood Hits	434	Target Neighborhood Hits	345	Shared Neighborhood Hits	289
SwissProt Accessions	P17208	Gene names	Pou4f1, Brn-3, Brn3, Brn3a
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Brn-3.0).

PO4F1_HUMAN
NC score	0.353236 (rank : 287)	θ value	4.03905 (rank : 381)
Query Neighborhood Hits	434	Target Neighborhood Hits	342	Shared Neighborhood Hits	290
SwissProt Accessions	Q01851, Q14986, Q15318	Gene names	POU4F1, BRN3A, RDC1
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Oct-T1) (Homeobox/POU domain protein RDC-1).

PO4F2_MOUSE
NC score	0.352969 (rank : 288)	θ value	2.36792 (rank : 363)
Query Neighborhood Hits	434	Target Neighborhood Hits	312	Shared Neighborhood Hits	285
SwissProt Accessions	Q63934, Q63954	Gene names	Pou4f2, Brn3b
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B) (Brn-3.2).

PO4F2_HUMAN
NC score	0.351840 (rank : 289)	θ value	2.36792 (rank : 362)
Query Neighborhood Hits	434	Target Neighborhood Hits	310	Shared Neighborhood Hits	285
SwissProt Accessions	Q12837, Q13883, Q14987	Gene names	POU4F2, BRN3B
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B).

PO4F3_MOUSE
NC score	0.349992 (rank : 290)	θ value	1.38821 (rank : 350)
Query Neighborhood Hits	434	Target Neighborhood Hits	311	Shared Neighborhood Hits	286
SwissProt Accessions	Q63955	Gene names	Pou4f3, Brn-3c, Brn3c
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

PO4F3_HUMAN
NC score	0.349351 (rank : 291)	θ value	1.38821 (rank : 349)
Query Neighborhood Hits	434	Target Neighborhood Hits	307	Shared Neighborhood Hits	284
SwissProt Accessions	Q15319, O60557	Gene names	POU4F3, BRN3C
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

PO3F3_MOUSE
NC score	0.347222 (rank : 292)	θ value	0.0736092 (rank : 303)
Query Neighborhood Hits	434	Target Neighborhood Hits	308	Shared Neighborhood Hits	274
SwissProt Accessions	P31361	Gene names	Pou3f3, Brn-1, Brn1, Otf8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

PO3F3_HUMAN
NC score	0.347191 (rank : 293)	θ value	0.0736092 (rank : 302)
Query Neighborhood Hits	434	Target Neighborhood Hits	311	Shared Neighborhood Hits	274
SwissProt Accessions	P20264, P78379	Gene names	POU3F3, BRN1, OTF8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

PO3F2_HUMAN
NC score	0.343518 (rank : 294)	θ value	0.0961366 (rank : 308)
Query Neighborhood Hits	434	Target Neighborhood Hits	308	Shared Neighborhood Hits	278
SwissProt Accessions	P20265, Q14960, Q86V54, Q9UJL0	Gene names	POU3F2, BRN2, OCT7, OTF7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

PO3F2_MOUSE
NC score	0.343509 (rank : 295)	θ value	0.0961366 (rank : 309)
Query Neighborhood Hits	434	Target Neighborhood Hits	313	Shared Neighborhood Hits	278
SwissProt Accessions	P31360	Gene names	Pou3f2, Brn-2, Brn2, Otf7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

PBX3_MOUSE
NC score	0.343450 (rank : 296)	θ value	6.88961 (rank : 414)
Query Neighborhood Hits	434	Target Neighborhood Hits	306	Shared Neighborhood Hits	283
SwissProt Accessions	O35317, Q925W2	Gene names	Pbx3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX3_HUMAN
NC score	0.343412 (rank : 297)	θ value	6.88961 (rank : 413)
Query Neighborhood Hits	434	Target Neighborhood Hits	306	Shared Neighborhood Hits	283
SwissProt Accessions	P40426, Q96PF9, Q96PG0	Gene names	PBX3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

IRX6_MOUSE
NC score	0.343193 (rank : 298)	θ value	0.00228821 (rank : 272)
Query Neighborhood Hits	434	Target Neighborhood Hits	256	Shared Neighborhood Hits	229
SwissProt Accessions	Q9ER75	Gene names	Irx6, Irxb3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

PBX1_HUMAN
NC score	0.340176 (rank : 299)	θ value	2.36792 (rank : 359)
Query Neighborhood Hits	434	Target Neighborhood Hits	317	Shared Neighborhood Hits	282
SwissProt Accessions	P40424	Gene names	PBX1, PRL
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1) (Homeobox protein PRL).

PBX1_MOUSE
NC score	0.340176 (rank : 300)	θ value	2.36792 (rank : 360)
Query Neighborhood Hits	434	Target Neighborhood Hits	317	Shared Neighborhood Hits	282
SwissProt Accessions	P41778	Gene names	Pbx1, Pbx-1
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1).

IRX6_HUMAN
NC score	0.331283 (rank : 301)	θ value	0.000602161 (rank : 260)
Query Neighborhood Hits	434	Target Neighborhood Hits	262	Shared Neighborhood Hits	233
SwissProt Accessions	P78412, Q7Z2K0	Gene names	IRX6, IRX7, IRXB3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

IRX4_MOUSE
NC score	0.327376 (rank : 302)	θ value	0.0113563 (rank : 280)
Query Neighborhood Hits	434	Target Neighborhood Hits	286	Shared Neighborhood Hits	247
SwissProt Accessions	Q9QY61	Gene names	Irx4, Irxa3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

SIX6_HUMAN
NC score	0.324798 (rank : 303)	θ value	0.21417 (rank : 315)
Query Neighborhood Hits	434	Target Neighborhood Hits	269	Shared Neighborhood Hits	243
SwissProt Accessions	O95475, Q9P1X8	Gene names	SIX6, OPTX2, SIX9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Homeodomain protein OPTX2).

SIX5_HUMAN
NC score	0.322027 (rank : 304)	θ value	0.163984 (rank : 312)
Query Neighborhood Hits	434	Target Neighborhood Hits	386	Shared Neighborhood Hits	244
SwissProt Accessions	Q8N196	Gene names	SIX5, DMAHP
Domain Architecture	No domain graphic available
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein).

SIX3_HUMAN
NC score	0.319167 (rank : 305)	θ value	0.279714 (rank : 318)
Query Neighborhood Hits	434	Target Neighborhood Hits	285	Shared Neighborhood Hits	257
SwissProt Accessions	O95343	Gene names	SIX3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX3_MOUSE
NC score	0.319111 (rank : 306)	θ value	0.279714 (rank : 319)
Query Neighborhood Hits	434	Target Neighborhood Hits	289	Shared Neighborhood Hits	257
SwissProt Accessions	Q62233, P70176, P70177	Gene names	Six3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX6_MOUSE
NC score	0.318810 (rank : 307)	θ value	0.21417 (rank : 316)
Query Neighborhood Hits	434	Target Neighborhood Hits	267	Shared Neighborhood Hits	244
SwissProt Accessions	Q9QZ28, O88423	Gene names	Six6, Optx2, Six9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Six9 protein).

PO5F1_MOUSE
NC score	0.318484 (rank : 308)	θ value	2.36792 (rank : 364)
Query Neighborhood Hits	434	Target Neighborhood Hits	305	Shared Neighborhood Hits	261
SwissProt Accessions	P20263, Q63843	Gene names	Pou5f1, Oct-3, Oct-4, Otf-3, Otf3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4) (NF-A3).

IRX4_HUMAN
NC score	0.317391 (rank : 309)	θ value	0.279714 (rank : 317)
Query Neighborhood Hits	434	Target Neighborhood Hits	276	Shared Neighborhood Hits	247
SwissProt Accessions	P78413, Q9UHR2	Gene names	IRX4, IRXA3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

PO3F1_MOUSE
NC score	0.316639 (rank : 310)	θ value	0.0193708 (rank : 296)
Query Neighborhood Hits	434	Target Neighborhood Hits	261	Shared Neighborhood Hits	243
SwissProt Accessions	P21952	Gene names	Pou3f1, Oct6, Otf-6, Otf6, Scip
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

PO3F1_HUMAN
NC score	0.313305 (rank : 311)	θ value	0.0252991 (rank : 297)
Query Neighborhood Hits	434	Target Neighborhood Hits	256	Shared Neighborhood Hits	242
SwissProt Accessions	Q03052	Gene names	POU3F1, OCT6, OTF6
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

IRX2_HUMAN
NC score	0.307114 (rank : 312)	θ value	0.00228821 (rank : 271)
Query Neighborhood Hits	434	Target Neighborhood Hits	358	Shared Neighborhood Hits	220
SwissProt Accessions	Q9BZI1, Q7Z2I7	Gene names	IRX2, IRXA2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

PO3F4_MOUSE
NC score	0.305828 (rank : 313)	θ value	0.0148317 (rank : 289)
Query Neighborhood Hits	434	Target Neighborhood Hits	281	Shared Neighborhood Hits	243
SwissProt Accessions	P62515, P25216	Gene names	Pou3f4, Brn-4, Brn4, Otf9
Domain Architecture	No domain graphic available
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

PO3F4_HUMAN
NC score	0.305118 (rank : 314)	θ value	0.0148317 (rank : 288)
Query Neighborhood Hits	434	Target Neighborhood Hits	297	Shared Neighborhood Hits	245
SwissProt Accessions	P49335, Q5H9G9, Q99410	Gene names	POU3F4, BRN4, OTF9
Domain Architecture
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

PO5F1_HUMAN
NC score	0.302953 (rank : 315)	θ value	5.27518 (rank : 395)
Query Neighborhood Hits	434	Target Neighborhood Hits	321	Shared Neighborhood Hits	272
SwissProt Accessions	Q01860, P31359, Q15167, Q15168, Q16422	Gene names	POU5F1, OCT3, OCT4, OTF3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4).

IRX3_MOUSE
NC score	0.291474 (rank : 316)	θ value	0.0961366 (rank : 306)
Query Neighborhood Hits	434	Target Neighborhood Hits	303	Shared Neighborhood Hits	212
SwissProt Accessions	P81067	Gene names	Irx3, Irxb1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

IRX3_HUMAN
NC score	0.288933 (rank : 317)	θ value	0.62314 (rank : 329)
Query Neighborhood Hits	434	Target Neighborhood Hits	342	Shared Neighborhood Hits	213
SwissProt Accessions	P78415, Q7Z4A4, Q7Z4A5, Q8IVC6	Gene names	IRX3, IRXB1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

IRX2_MOUSE
NC score	0.286640 (rank : 318)	θ value	0.000270298 (rank : 254)
Query Neighborhood Hits	434	Target Neighborhood Hits	264	Shared Neighborhood Hits	208
SwissProt Accessions	P81066, O55121, Q9ERN1	Gene names	Irx2, Irxa2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

IRX5_HUMAN
NC score	0.285058 (rank : 319)	θ value	0.00665767 (rank : 275)
Query Neighborhood Hits	434	Target Neighborhood Hits	362	Shared Neighborhood Hits	212
SwissProt Accessions	P78411, P78416, Q7Z2E1	Gene names	IRX5, IRX2A, IRXB2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2) (IRX-2A).

HOP_HUMAN
NC score	0.284186 (rank : 320)	θ value	θ > 10 (rank : 441)
Query Neighborhood Hits	434	Target Neighborhood Hits	107	Shared Neighborhood Hits	98
SwissProt Accessions	Q9BPY8, Q8N0V6, Q96CI1	Gene names	HOP, HOD, LAGY, NECC1, OB1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Lung cancer-associated Y protein) (Odd homeobox protein 1) (Not expressed in choriocarcinoma protein 1).

IRX1_HUMAN
NC score	0.278527 (rank : 321)	θ value	0.365318 (rank : 320)
Query Neighborhood Hits	434	Target Neighborhood Hits	285	Shared Neighborhood Hits	219
SwissProt Accessions	P78414, Q7Z2F8, Q8N312	Gene names	IRX1, IRXA1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

HOP_MOUSE
NC score	0.277671 (rank : 322)	θ value	θ > 10 (rank : 442)
Query Neighborhood Hits	434	Target Neighborhood Hits	102	Shared Neighborhood Hits	92
SwissProt Accessions	Q8R1H0, Q8C1N5, Q8CJ22	Gene names	Hop, Hod, Ob1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Homeobox-only protein) (Odd homeobox protein 1) (mOB1).

IRX5_MOUSE
NC score	0.277126 (rank : 323)	θ value	0.00869519 (rank : 277)
Query Neighborhood Hits	434	Target Neighborhood Hits	324	Shared Neighborhood Hits	211
SwissProt Accessions	Q9JKQ4, Q80WV4, Q9JLL5	Gene names	Irx5, Irxb2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2).

IRX1_MOUSE
NC score	0.275090 (rank : 324)	θ value	0.365318 (rank : 321)
Query Neighborhood Hits	434	Target Neighborhood Hits	269	Shared Neighborhood Hits	215
SwissProt Accessions	P81068, O55120, Q9JLL6	Gene names	Irx1, Irxa1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

SIX5_MOUSE
NC score	0.259316 (rank : 325)	θ value	0.21417 (rank : 314)
Query Neighborhood Hits	434	Target Neighborhood Hits	354	Shared Neighborhood Hits	211
SwissProt Accessions	P70178	Gene names	Six5, Dmahp
Domain Architecture
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein homolog).

ZHX3_MOUSE
NC score	0.247188 (rank : 326)	θ value	0.0736092 (rank : 305)
Query Neighborhood Hits	434	Target Neighborhood Hits	321	Shared Neighborhood Hits	218
SwissProt Accessions	Q8C0Q2, Q80U14	Gene names	Zhx3, Kiaa0395, Tix1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

ZHX3_HUMAN
NC score	0.246459 (rank : 327)	θ value	0.163984 (rank : 313)
Query Neighborhood Hits	434	Target Neighborhood Hits	331	Shared Neighborhood Hits	223
SwissProt Accessions	Q9H4I2, O43145	Gene names	ZHX3, KIAA0395, TIX1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

RHOX5_MOUSE
NC score	0.239082 (rank : 328)	θ value	1.06291 (rank : 344)
Query Neighborhood Hits	434	Target Neighborhood Hits	69	Shared Neighborhood Hits	55
SwissProt Accessions	P52651	Gene names	Rhox5, Pem
Domain Architecture	No domain graphic available
Description	Homeobox protein Rhox5 (Reproductive homeobox on chromosome X 5) (Homeobox protein Pem) (Placenta and embryonic expression protein).

ZHX1_MOUSE
NC score	0.236304 (rank : 329)	θ value	0.0330416 (rank : 298)
Query Neighborhood Hits	434	Target Neighborhood Hits	334	Shared Neighborhood Hits	215
SwissProt Accessions	P70121, Q8BQ68, Q8C6T4, Q8CJG3	Gene names	Zhx1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

ZHX2_HUMAN
NC score	0.228074 (rank : 330)	θ value	0.0736092 (rank : 304)
Query Neighborhood Hits	434	Target Neighborhood Hits	347	Shared Neighborhood Hits	187
SwissProt Accessions	Q9Y6X8	Gene names	ZHX2, AFR1, KIAA0854, RAF
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

ZHX1_HUMAN
NC score	0.225071 (rank : 331)	θ value	0.62314 (rank : 332)
Query Neighborhood Hits	434	Target Neighborhood Hits	307	Shared Neighborhood Hits	208
SwissProt Accessions	Q9UKY1, Q8IWD8	Gene names	ZHX1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

ZHX2_MOUSE
NC score	0.217752 (rank : 332)	θ value	0.62314 (rank : 333)
Query Neighborhood Hits	434	Target Neighborhood Hits	435	Shared Neighborhood Hits	183
SwissProt Accessions	Q8C0C0	Gene names	Zhx2, Afr1, Raf
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

PO5FM_HUMAN
NC score	0.190118 (rank : 333)	θ value	θ > 10 (rank : 471)
Query Neighborhood Hits	434	Target Neighborhood Hits	212	Shared Neighborhood Hits	186
SwissProt Accessions	Q9BZV7	Gene names	POU5F1P1, POU5FLC20
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 2.

PO5FL_HUMAN
NC score	0.188810 (rank : 334)	θ value	θ > 10 (rank : 470)
Query Neighborhood Hits	434	Target Neighborhood Hits	214	Shared Neighborhood Hits	183
SwissProt Accessions	Q06416, Q9BZV9	Gene names	POU5F1P1, OTF3C, POU5FLC8
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 1 (Octamer- binding protein 3-like).

HMBX1_HUMAN
NC score	0.184495 (rank : 335)	θ value	4.03905 (rank : 376)
Query Neighborhood Hits	434	Target Neighborhood Hits	118	Shared Neighborhood Hits	102
SwissProt Accessions	Q6NT76, Q3Y6P1, Q96GS5, Q9H701	Gene names	HMBOX1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

HMBX1_MOUSE
NC score	0.183507 (rank : 336)	θ value	3.0926 (rank : 369)
Query Neighborhood Hits	434	Target Neighborhood Hits	117	Shared Neighborhood Hits	102
SwissProt Accessions	Q8BJA3, Q80WC2, Q8BWE7, Q99LV1	Gene names	Hmbox1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

CUTL2_HUMAN
NC score	0.178567 (rank : 337)	θ value	0.0148317 (rank : 285)
Query Neighborhood Hits	434	Target Neighborhood Hits	906	Shared Neighborhood Hits	185
SwissProt Accessions	O14529	Gene names	CUTL2, KIAA0293
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

CUTL2_MOUSE
NC score	0.176836 (rank : 338)	θ value	0.163984 (rank : 311)
Query Neighborhood Hits	434	Target Neighborhood Hits	771	Shared Neighborhood Hits	176
SwissProt Accessions	P70298	Gene names	Cutl2
Domain Architecture
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

CUTL1_MOUSE
NC score	0.172685 (rank : 339)	θ value	0.00102713 (rank : 265)
Query Neighborhood Hits	434	Target Neighborhood Hits	1620	Shared Neighborhood Hits	232
SwissProt Accessions	P53564, O08994, P70301, Q571L6, Q91ZD2	Gene names	Cutl1, Cux, Cux1, Kiaa4047
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP) (Homeobox protein Cux).

CUTL1_HUMAN
NC score	0.159333 (rank : 340)	θ value	0.00869519 (rank : 276)
Query Neighborhood Hits	434	Target Neighborhood Hits	1574	Shared Neighborhood Hits	222
SwissProt Accessions	P39880, Q6NYH4, Q9UEV5	Gene names	CUTL1
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP).

PO5FN_HUMAN
NC score	0.132807 (rank : 341)	θ value	θ > 10 (rank : 472)
Query Neighborhood Hits	434	Target Neighborhood Hits	134	Shared Neighborhood Hits	115
SwissProt Accessions	Q9BZW0	Gene names	POU5FLC1
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 3.

PAX2_MOUSE
NC score	0.112459 (rank : 342)	θ value	θ > 10 (rank : 457)
Query Neighborhood Hits	434	Target Neighborhood Hits	86	Shared Neighborhood Hits	54
SwissProt Accessions	P32114	Gene names	Pax2, Pax-2
Domain Architecture
Description	Paired box protein Pax-2.

PAX2_HUMAN
NC score	0.111907 (rank : 343)	θ value	θ > 10 (rank : 456)
Query Neighborhood Hits	434	Target Neighborhood Hits	84	Shared Neighborhood Hits	55
SwissProt Accessions	Q02962, Q15105, Q15110, Q15837	Gene names	PAX2
Domain Architecture
Description	Paired box protein Pax-2.

SPRM1_HUMAN
NC score	0.104764 (rank : 344)	θ value	θ > 10 (rank : 477)
Query Neighborhood Hits	434	Target Neighborhood Hits	72	Shared Neighborhood Hits	61
SwissProt Accessions	Q8N7G0, Q8N748	Gene names	SPRM1
Domain Architecture
Description	Sperm 1 POU-domain transcription factor (SPRM-1).

PAX5_HUMAN
NC score	0.101439 (rank : 345)	θ value	θ > 10 (rank : 458)
Query Neighborhood Hits	434	Target Neighborhood Hits	106	Shared Neighborhood Hits	53
SwissProt Accessions	Q02548, O75933	Gene names	PAX5
Domain Architecture
Description	Paired box protein Pax-5 (B-cell-specific transcription factor) (BSAP).

PAX5_MOUSE
NC score	0.101139 (rank : 346)	θ value	θ > 10 (rank : 459)
Query Neighborhood Hits	434	Target Neighborhood Hits	106	Shared Neighborhood Hits	53
SwissProt Accessions	Q02650	Gene names	Pax5, Pax-5
Domain Architecture
Description	Paired box protein Pax-5 (B-cell-specific transcription factor) (BSAP).

MEIS2_MOUSE
NC score	0.101102 (rank : 347)	θ value	1.06291 (rank : 343)
Query Neighborhood Hits	434	Target Neighborhood Hits	208	Shared Neighborhood Hits	113
SwissProt Accessions	P97367, O35676, O35677, P97403, P97404	Gene names	Meis2, Mrg1, Stra10
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

LMO4_HUMAN
NC score	0.100640 (rank : 348)	θ value	θ > 10 (rank : 445)
Query Neighborhood Hits	434	Target Neighborhood Hits	111	Shared Neighborhood Hits	26
SwissProt Accessions	P61968, O00158, O88894	Gene names	LMO4
Domain Architecture
Description	LIM domain transcription factor LMO4 (LIM domain only protein 4) (LMO- 4) (Breast tumor autoantigen).

LMO4_MOUSE
NC score	0.100640 (rank : 349)	θ value	θ > 10 (rank : 446)
Query Neighborhood Hits	434	Target Neighborhood Hits	111	Shared Neighborhood Hits	26
SwissProt Accessions	P61969, O00158, O88894	Gene names	Lmo4
Domain Architecture
Description	LIM domain transcription factor LMO4 (LIM domain only protein 4) (LMO- 4) (Breast tumor autoantigen).

SPRM1_MOUSE
NC score	0.098186 (rank : 350)	θ value	θ > 10 (rank : 478)
Query Neighborhood Hits	434	Target Neighborhood Hits	73	Shared Neighborhood Hits	60
SwissProt Accessions	Q9DAC9	Gene names	Sprm1
Domain Architecture
Description	Sperm 1 POU-domain transcription factor (SPRM-1).

MEIS2_HUMAN
NC score	0.097732 (rank : 351)	θ value	0.365318 (rank : 322)
Query Neighborhood Hits	434	Target Neighborhood Hits	182	Shared Neighborhood Hits	105
SwissProt Accessions	O14770, Q96KI4, Q96KI5, Q9NRS1, Q9NRS2, Q9NRS3	Gene names	MEIS2, MRG1
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

RBTN1_HUMAN
NC score	0.097711 (rank : 352)	θ value	θ > 10 (rank : 473)
Query Neighborhood Hits	434	Target Neighborhood Hits	110	Shared Neighborhood Hits	26
SwissProt Accessions	P25800, Q4VBC5	Gene names	LMO1, RBTN1, RHOM1, TTG1
Domain Architecture
Description	Rhombotin-1 (Cysteine-rich protein TTG-1) (T-cell translocation protein 1) (LIM-only protein 1).

LMO3_HUMAN
NC score	0.097707 (rank : 353)	θ value	θ > 10 (rank : 443)
Query Neighborhood Hits	434	Target Neighborhood Hits	111	Shared Neighborhood Hits	26
SwissProt Accessions	Q8TAP4, Q8N974, Q9UDD5	Gene names	LMO3, RBTN3, RHOM3
Domain Architecture
Description	LIM-only protein 3 (Neuronal-specific transcription factor DAT1) (Rhombotin-3).

LMO3_MOUSE
NC score	0.097707 (rank : 354)	θ value	θ > 10 (rank : 444)
Query Neighborhood Hits	434	Target Neighborhood Hits	111	Shared Neighborhood Hits	26
SwissProt Accessions	Q8BZL8	Gene names	Lmo3
Domain Architecture
Description	LIM-only protein 3 (Neuronal-specific transcription factor DAT1).

RBTN1_MOUSE
NC score	0.097688 (rank : 355)	θ value	θ > 10 (rank : 474)
Query Neighborhood Hits	434	Target Neighborhood Hits	109	Shared Neighborhood Hits	25
SwissProt Accessions	Q924W9	Gene names	Lmo1, Rbtn1, Rhom1, Ttg1
Domain Architecture	No domain graphic available
Description	Rhombotin-1 (Cysteine-rich protein TTG-1) (LIM-only protein 1).

HNF6_MOUSE
NC score	0.093963 (rank : 356)	θ value	θ > 10 (rank : 440)
Query Neighborhood Hits	434	Target Neighborhood Hits	124	Shared Neighborhood Hits	85
SwissProt Accessions	O08755	Gene names	Onecut1, Hnf6, Hnf6a
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

RBTN2_MOUSE
NC score	0.093562 (rank : 357)	θ value	θ > 10 (rank : 476)
Query Neighborhood Hits	434	Target Neighborhood Hits	114	Shared Neighborhood Hits	26
SwissProt Accessions	P25801	Gene names	Lmo2, Rbtn-2, Rbtn2, Rhom-2
Domain Architecture
Description	Rhombotin-2 (Cysteine-rich protein TTG-2) (T-cell translocation protein 2) (LIM-only protein 2).

RBTN2_HUMAN
NC score	0.093559 (rank : 358)	θ value	θ > 10 (rank : 475)
Query Neighborhood Hits	434	Target Neighborhood Hits	114	Shared Neighborhood Hits	26
SwissProt Accessions	P25791, Q9HD58	Gene names	LMO2, RBTN2, RHOM2, TTG2
Domain Architecture
Description	Rhombotin-2 (Cysteine-rich protein TTG-2) (T-cell translocation protein 2) (LIM-only protein 2).

PAX8_MOUSE
NC score	0.093428 (rank : 359)	θ value	θ > 10 (rank : 461)
Query Neighborhood Hits	434	Target Neighborhood Hits	62	Shared Neighborhood Hits	29
SwissProt Accessions	Q00288, P97342	Gene names	Pax8, Pax-8
Domain Architecture
Description	Paired box protein Pax-8.

HOMEZ_HUMAN
NC score	0.091928 (rank : 360)	θ value	0.0148317 (rank : 287)
Query Neighborhood Hits	434	Target Neighborhood Hits	110	Shared Neighborhood Hits	53
SwissProt Accessions	Q8IX15, Q6P049, Q86XB6, Q9P2A5	Gene names	HOMEZ, KIAA1443
Domain Architecture
Description	Homeobox and leucine zipper protein Homez (Homeodomain leucine zipper- containing factor).

MEIS3_HUMAN
NC score	0.091563 (rank : 361)	θ value	θ > 10 (rank : 450)
Query Neighborhood Hits	434	Target Neighborhood Hits	118	Shared Neighborhood Hits	95
SwissProt Accessions	Q99687, Q6NT73, Q8TC66, Q9NPW2	Gene names	MEIS3, MRG2
Domain Architecture	No domain graphic available
Description	Homeobox protein Meis3 (Meis1-related protein 2).

HNF6_HUMAN
NC score	0.089893 (rank : 362)	θ value	θ > 10 (rank : 439)
Query Neighborhood Hits	434	Target Neighborhood Hits	127	Shared Neighborhood Hits	83
SwissProt Accessions	Q9UBC0, Q99744, Q9UMR6	Gene names	ONECUT1, HNF6, HNF6A
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

MEIS3_MOUSE
NC score	0.088228 (rank : 363)	θ value	θ > 10 (rank : 451)
Query Neighborhood Hits	434	Target Neighborhood Hits	118	Shared Neighborhood Hits	94
SwissProt Accessions	P97368, Q99L81	Gene names	Meis3, Mrg2
Domain Architecture
Description	Homeobox protein Meis3 (Meis1-related protein 2).

MEIS1_HUMAN
NC score	0.086263 (rank : 364)	θ value	θ > 10 (rank : 448)
Query Neighborhood Hits	434	Target Neighborhood Hits	115	Shared Neighborhood Hits	97
SwissProt Accessions	O00470	Gene names	MEIS1
Domain Architecture
Description	Homeobox protein Meis1.

MEIS1_MOUSE
NC score	0.086258 (rank : 365)	θ value	θ > 10 (rank : 449)
Query Neighborhood Hits	434	Target Neighborhood Hits	115	Shared Neighborhood Hits	97
SwissProt Accessions	Q60954, Q5SVC8, Q60955, Q8CIL0	Gene names	Meis1
Domain Architecture
Description	Homeobox protein Meis1 (Myeloid ecotropic viral integration site 1).

TF2LX_HUMAN
NC score	0.084515 (rank : 366)	θ value	θ > 10 (rank : 479)
Query Neighborhood Hits	434	Target Neighborhood Hits	108	Shared Neighborhood Hits	74
SwissProt Accessions	Q8IUE1	Gene names	TGIF2LX, TGIFLX
Domain Architecture
Description	Homeobox protein TGIF2LX (TGFB-induced factor 2-like protein, X- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the X).

PAX8_HUMAN
NC score	0.083540 (rank : 367)	θ value	θ > 10 (rank : 460)
Query Neighborhood Hits	434	Target Neighborhood Hits	56	Shared Neighborhood Hits	22
SwissProt Accessions	Q06710, Q09155, Q16337, Q16338, Q16339, Q96J49	Gene names	PAX8
Domain Architecture
Description	Paired box protein Pax-8.

ONEC2_HUMAN
NC score	0.082926 (rank : 368)	θ value	θ > 10 (rank : 452)
Query Neighborhood Hits	434	Target Neighborhood Hits	115	Shared Neighborhood Hits	77
SwissProt Accessions	O95948	Gene names	ONECUT2
Domain Architecture
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

ONEC2_MOUSE
NC score	0.080160 (rank : 369)	θ value	θ > 10 (rank : 453)
Query Neighborhood Hits	434	Target Neighborhood Hits	123	Shared Neighborhood Hits	77
SwissProt Accessions	Q6XBJ3	Gene names	Onecut2, Oc2
Domain Architecture	No domain graphic available
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

PAX9_HUMAN
NC score	0.077799 (rank : 370)	θ value	θ > 10 (rank : 462)
Query Neighborhood Hits	434	Target Neighborhood Hits	92	Shared Neighborhood Hits	18
SwissProt Accessions	P55771, Q99582, Q9UQR4	Gene names	PAX9
Domain Architecture
Description	Paired box protein Pax-9.

PAX9_MOUSE
NC score	0.077785 (rank : 371)	θ value	θ > 10 (rank : 463)
Query Neighborhood Hits	434	Target Neighborhood Hits	67	Shared Neighborhood Hits	15
SwissProt Accessions	P47242	Gene names	Pax9, Pax-9
Domain Architecture
Description	Paired box protein Pax-9.

TF2LY_HUMAN
NC score	0.075599 (rank : 372)	θ value	θ > 10 (rank : 480)
Query Neighborhood Hits	434	Target Neighborhood Hits	90	Shared Neighborhood Hits	67
SwissProt Accessions	Q8IUE0	Gene names	TGIF2LY, TGIFLY
Domain Architecture
Description	Homeobox protein TGIF2LY (TGFB-induced factor 2-like protein, Y- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the Y).

TGIF2_MOUSE
NC score	0.074224 (rank : 373)	θ value	θ > 10 (rank : 482)
Query Neighborhood Hits	434	Target Neighborhood Hits	127	Shared Neighborhood Hits	69
SwissProt Accessions	Q8C0Y1	Gene names	Tgif2
Domain Architecture	No domain graphic available
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

PAX1_MOUSE
NC score	0.073658 (rank : 374)	θ value	θ > 10 (rank : 455)
Query Neighborhood Hits	434	Target Neighborhood Hits	69	Shared Neighborhood Hits	17
SwissProt Accessions	P09084, Q9R2B1	Gene names	Pax1, Pax-1
Domain Architecture
Description	Paired box protein Pax-1.

PAX1_HUMAN
NC score	0.072814 (rank : 375)	θ value	θ > 10 (rank : 454)
Query Neighborhood Hits	434	Target Neighborhood Hits	72	Shared Neighborhood Hits	15
SwissProt Accessions	P15863, Q642X9, Q6NTC0, Q9Y558	Gene names	PAX1, HUP48
Domain Architecture
Description	Paired box protein Pax-1 (HUP48).

PKNX2_MOUSE
NC score	0.069079 (rank : 376)	θ value	θ > 10 (rank : 469)
Query Neighborhood Hits	434	Target Neighborhood Hits	197	Shared Neighborhood Hits	94
SwissProt Accessions	Q8BG99, Q8R4B0	Gene names	Pknox2, Prep2
Domain Architecture	No domain graphic available
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

PKNX1_MOUSE
NC score	0.068851 (rank : 377)	θ value	θ > 10 (rank : 467)
Query Neighborhood Hits	434	Target Neighborhood Hits	103	Shared Neighborhood Hits	79
SwissProt Accessions	O70477	Gene names	Pknox1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1).

TGIF_HUMAN
NC score	0.068770 (rank : 378)	θ value	θ > 10 (rank : 483)
Query Neighborhood Hits	434	Target Neighborhood Hits	109	Shared Neighborhood Hits	62
SwissProt Accessions	Q15583, Q6ICR0, Q8N5X9, Q9NRS0	Gene names	TGIF
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

PKNX1_HUMAN
NC score	0.068257 (rank : 379)	θ value	θ > 10 (rank : 466)
Query Neighborhood Hits	434	Target Neighborhood Hits	101	Shared Neighborhood Hits	78
SwissProt Accessions	P55347, O00528, Q8IWT7	Gene names	PKNOX1, PREP1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1) (Homeobox protein PREP-1).

TGIF_MOUSE
NC score	0.067759 (rank : 380)	θ value	θ > 10 (rank : 484)
Query Neighborhood Hits	434	Target Neighborhood Hits	125	Shared Neighborhood Hits	64
SwissProt Accessions	P70284, Q921F9, Q99JS3	Gene names	Tgif
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

PKNX2_HUMAN
NC score	0.067080 (rank : 381)	θ value	θ > 10 (rank : 468)
Query Neighborhood Hits	434	Target Neighborhood Hits	133	Shared Neighborhood Hits	85
SwissProt Accessions	Q96KN3, Q63HL6, Q86XD1	Gene names	PKNOX2, PREP2
Domain Architecture
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

TGIF2_HUMAN
NC score	0.064500 (rank : 382)	θ value	θ > 10 (rank : 481)
Query Neighborhood Hits	434	Target Neighborhood Hits	94	Shared Neighborhood Hits	60
SwissProt Accessions	Q9GZN2	Gene names	TGIF2
Domain Architecture
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

OLIG2_MOUSE
NC score	0.059902 (rank : 383)	θ value	1.43324e-05 (rank : 238)
Query Neighborhood Hits	434	Target Neighborhood Hits	74	Shared Neighborhood Hits	6
SwissProt Accessions	Q9EQW6, Q9JKN4	Gene names	Olig2
Domain Architecture
Description	Oligodendrocyte transcription factor 2 (Oligo2).

OLIG2_HUMAN
NC score	0.057341 (rank : 384)	θ value	4.1701e-05 (rank : 245)
Query Neighborhood Hits	434	Target Neighborhood Hits	84	Shared Neighborhood Hits	6
SwissProt Accessions	Q13516, Q86X04, Q9NZ14	Gene names	OLIG2, BHLHB1, PRKCBP2, RACK17
Domain Architecture
Description	Oligodendrocyte transcription factor 2 (Oligo2) (Basic helix-loop- helix protein class B 1) (Protein kinase C-binding protein RACK17) (Protein kinase C-binding protein 2).

RERE_HUMAN
NC score	0.055263 (rank : 385)	θ value	5.44631e-05 (rank : 247)
Query Neighborhood Hits	434	Target Neighborhood Hits	779	Shared Neighborhood Hits	57
SwissProt Accessions	Q9P2R6, O43393, O75046, O75359, Q5VXL9, Q6P6B9, Q9Y2W4	Gene names	RERE, ARG, ARP, ATN1L, KIAA0458
Domain Architecture	No domain graphic available
Description	Arginine-glutamic acid dipeptide repeats protein (Atrophin-1-like protein) (Atrophin-1-related protein).

TRIP6_HUMAN
NC score	0.053917 (rank : 386)	θ value	θ > 10 (rank : 485)
Query Neighborhood Hits	434	Target Neighborhood Hits	228	Shared Neighborhood Hits	37
SwissProt Accessions	Q15654, O15170, O15275, Q9BTB2, Q9UNT4	Gene names	TRIP6, OIP1
Domain Architecture
Description	Thyroid receptor-interacting protein 6 (TRIP6) (OPA-interacting protein 1) (Zyxin-related protein 1) (ZRP-1).

PDLI7_HUMAN
NC score	0.053641 (rank : 387)	θ value	θ > 10 (rank : 464)
Query Neighborhood Hits	434	Target Neighborhood Hits	547	Shared Neighborhood Hits	58
SwissProt Accessions	Q9NR12, Q14250, Q5XG82, Q6NVZ5, Q96C91, Q9BXB8, Q9BXB9	Gene names	PDLIM7, ENIGMA
Domain Architecture	No domain graphic available
Description	PDZ and LIM domain protein 7 (LIM mineralization protein) (LMP) (Protein enigma).

LPP_HUMAN
NC score	0.052015 (rank : 388)	θ value	θ > 10 (rank : 447)
Query Neighborhood Hits	434	Target Neighborhood Hits	775	Shared Neighborhood Hits	82
SwissProt Accessions	Q93052, Q8NFX5	Gene names	LPP
Domain Architecture	No domain graphic available
Description	Lipoma-preferred partner (LIM domain-containing preferred translocation partner in lipoma).

ABLM3_HUMAN
NC score	0.051523 (rank : 389)	θ value	θ > 10 (rank : 437)
Query Neighborhood Hits	434	Target Neighborhood Hits	293	Shared Neighborhood Hits	31
SwissProt Accessions	O94929, Q658S1, Q68CI5, Q9BV32	Gene names	ABLIM3, KIAA0843
Domain Architecture	No domain graphic available
Description	Actin-binding LIM protein 3 (Actin-binding LIM protein family member 3) (abLIM-3).

PDLI7_MOUSE
NC score	0.051403 (rank : 390)	θ value	θ > 10 (rank : 465)
Query Neighborhood Hits	434	Target Neighborhood Hits	279	Shared Neighborhood Hits	32
SwissProt Accessions	Q3TJD7, Q80ZY6, Q810S3, Q8C1S4, Q9CRA1	Gene names	Pdlim7, Enigma
Domain Architecture	No domain graphic available
Description	PDZ and LIM domain protein 7 (LIM mineralization protein) (LMP) (Protein enigma).

ABLM3_MOUSE
NC score	0.051242 (rank : 391)	θ value	θ > 10 (rank : 438)
Query Neighborhood Hits	434	Target Neighborhood Hits	294	Shared Neighborhood Hits	28
SwissProt Accessions	Q69ZX8, Q52KR1, Q6PAI7	Gene names	Ablim3, Kiaa0843
Domain Architecture	No domain graphic available
Description	Actin-binding LIM protein 3 (Actin-binding LIM protein family member 3) (abLIM-3).

ABLM1_MOUSE
NC score	0.050620 (rank : 392)	θ value	θ > 10 (rank : 436)
Query Neighborhood Hits	434	Target Neighborhood Hits	356	Shared Neighborhood Hits	30
SwissProt Accessions	Q8K4G5, Q80U86, Q8BIR9, Q8K4G3, Q8K4G4	Gene names	Ablim1, Ablim, Kiaa0059
Domain Architecture	No domain graphic available
Description	Actin-binding LIM protein 1 (Actin-binding LIM protein family member 1) (abLIM-1).

ABLM1_HUMAN
NC score	0.050205 (rank : 393)	θ value	θ > 10 (rank : 435)
Query Neighborhood Hits	434	Target Neighborhood Hits	387	Shared Neighborhood Hits	37
SwissProt Accessions	O14639, Q15039, Q68CQ9, Q9BUP1	Gene names	ABLIM1, ABLIM, KIAA0059
Domain Architecture	No domain graphic available
Description	Actin-binding LIM protein 1 (Actin-binding LIM protein family member 1) (abLIM-1) (Actin-binding double-zinc-finger protein) (LIMAB1) (Limatin).

ZYX_HUMAN
NC score	0.049822 (rank : 394)	θ value	1.06291 (rank : 347)
Query Neighborhood Hits	434	Target Neighborhood Hits	387	Shared Neighborhood Hits	43
SwissProt Accessions	Q15942	Gene names	ZYX
Domain Architecture
Description	Zyxin (Zyxin-2).

HNF1B_MOUSE
NC score	0.044328 (rank : 395)	θ value	8.99809 (rank : 426)
Query Neighborhood Hits	434	Target Neighborhood Hits	78	Shared Neighborhood Hits	32
SwissProt Accessions	P27889, Q8R162, Q9CS26, Q9R1W1, Q9R1W2, Q9WTL5, Q9WTL6	Gene names	Tcf2, Hnf-1b, Hnf1b
Domain Architecture
Description	Hepatocyte nuclear factor 1-beta (HNF-1beta) (HNF-1B) (Variant hepatic nuclear factor 1) (VHNF1) (Homeoprotein LFB3).

HNF1B_HUMAN
NC score	0.043227 (rank : 396)	θ value	6.88961 (rank : 404)
Query Neighborhood Hits	434	Target Neighborhood Hits	80	Shared Neighborhood Hits	32
SwissProt Accessions	P35680	Gene names	TCF2, HNF1B
Domain Architecture
Description	Hepatocyte nuclear factor 1-beta (HNF-1beta) (HNF-1B) (Variant hepatic nuclear factor 1) (VHNF1) (Homeoprotein LFB3) (Transcription factor 2) (TCF-2).

RERE_MOUSE
NC score	0.042359 (rank : 397)	θ value	0.0148317 (rank : 290)
Query Neighborhood Hits	434	Target Neighborhood Hits	785	Shared Neighborhood Hits	52
SwissProt Accessions	Q80TZ9	Gene names	Rere, Atr2, Kiaa0458
Domain Architecture	No domain graphic available
Description	Arginine-glutamic acid dipeptide repeats protein (Atrophin-2).

ATN1_HUMAN
NC score	0.041431 (rank : 398)	θ value	1.06291 (rank : 337)
Query Neighborhood Hits	434	Target Neighborhood Hits	676	Shared Neighborhood Hits	44
SwissProt Accessions	P54259, Q99495, Q99621, Q9UEK7	Gene names	ATN1, DRPLA
Domain Architecture
Description	Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein).

YLPM1_HUMAN
NC score	0.034004 (rank : 399)	θ value	0.365318 (rank : 325)
Query Neighborhood Hits	434	Target Neighborhood Hits	670	Shared Neighborhood Hits	46
SwissProt Accessions	P49750, P49752, Q96I64, Q9P1V7	Gene names	YLPM1, C14orf170, ZAP3
Domain Architecture
Description	YLP motif-containing protein 1 (Nuclear protein ZAP3) (ZAP113).

RPB1_MOUSE
NC score	0.030207 (rank : 400)	θ value	1.06291 (rank : 346)
Query Neighborhood Hits	434	Target Neighborhood Hits	363	Shared Neighborhood Hits	32
SwissProt Accessions	P08775	Gene names	Polr2a, Rpii215, Rpo2-1
Domain Architecture
Description	DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6) (RPB1).

RPB1_HUMAN
NC score	0.029808 (rank : 401)	θ value	1.06291 (rank : 345)
Query Neighborhood Hits	434	Target Neighborhood Hits	362	Shared Neighborhood Hits	31
SwissProt Accessions	P24928	Gene names	POLR2A
Domain Architecture
Description	DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6) (RPB1).

AUTS2_HUMAN
NC score	0.025169 (rank : 402)	θ value	0.62314 (rank : 326)
Query Neighborhood Hits	434	Target Neighborhood Hits	342	Shared Neighborhood Hits	28
SwissProt Accessions	Q8WXX7, Q9Y4F2	Gene names	AUTS2, KIAA0442
Domain Architecture	No domain graphic available
Description	Autism susceptibility gene 2 protein.

SC24C_HUMAN
NC score	0.024376 (rank : 403)	θ value	4.03905 (rank : 383)
Query Neighborhood Hits	434	Target Neighborhood Hits	662	Shared Neighborhood Hits	63
SwissProt Accessions	P53992, Q8WV25	Gene names	SEC24C, KIAA0079
Domain Architecture
Description	Protein transport protein Sec24C (SEC24-related protein C).

BAT2_HUMAN
NC score	0.021825 (rank : 404)	θ value	6.88961 (rank : 400)
Query Neighborhood Hits	434	Target Neighborhood Hits	931	Shared Neighborhood Hits	56
SwissProt Accessions	P48634, O95875, Q5SQ29, Q5SQ30, Q5ST84, Q5STX6, Q5STX7, Q68DW9, Q6P9P7, Q6PIN1, Q96QC6	Gene names	BAT2, G2
Domain Architecture
Description	Large proline-rich protein BAT2 (HLA-B-associated transcript 2).

GSCR1_HUMAN
NC score	0.021548 (rank : 405)	θ value	6.88961 (rank : 403)
Query Neighborhood Hits	434	Target Neighborhood Hits	674	Shared Neighborhood Hits	44
SwissProt Accessions	Q9NZM4	Gene names	GLTSCR1
Domain Architecture	No domain graphic available
Description	Glioma tumor suppressor candidate region gene 1 protein.

BAG3_MOUSE
NC score	0.020765 (rank : 406)	θ value	0.813845 (rank : 334)
Query Neighborhood Hits	434	Target Neighborhood Hits	513	Shared Neighborhood Hits	35
SwissProt Accessions	Q9JLV1, Q9JJC7	Gene names	Bag3, Bis
Domain Architecture
Description	BAG family molecular chaperone regulator 3 (BCL-2-binding athanogene- 3) (BAG-3) (Bcl-2-binding protein Bis).

TB182_HUMAN
NC score	0.020104 (rank : 407)	θ value	1.38821 (rank : 351)
Query Neighborhood Hits	434	Target Neighborhood Hits	414	Shared Neighborhood Hits	27
SwissProt Accessions	Q9C0C2	Gene names	TNKS1BP1, KIAA1741, TAB182
Domain Architecture	No domain graphic available
Description	182 kDa tankyrase 1-binding protein.

PER3_HUMAN
NC score	0.019977 (rank : 408)	θ value	0.813845 (rank : 335)
Query Neighborhood Hits	434	Target Neighborhood Hits	479	Shared Neighborhood Hits	44
SwissProt Accessions	P56645, Q5H8X4, Q969K6, Q96S77, Q96S78, Q9C0J3, Q9NSP9, Q9UGU8	Gene names	PER3
Domain Architecture
Description	Period circadian protein 3 (hPER3).

ENL_HUMAN
NC score	0.018549 (rank : 409)	θ value	0.125558 (rank : 310)
Query Neighborhood Hits	434	Target Neighborhood Hits	305	Shared Neighborhood Hits	16
SwissProt Accessions	Q03111, Q14768	Gene names	MLLT1, ENL, LTG19, YEATS1
Domain Architecture
Description	Protein ENL (YEATS domain-containing protein 1).

BAG3_HUMAN
NC score	0.017601 (rank : 410)	θ value	2.36792 (rank : 355)
Query Neighborhood Hits	434	Target Neighborhood Hits	314	Shared Neighborhood Hits	22
SwissProt Accessions	O95817, Q9NT20, Q9P120	Gene names	BAG3, BIS
Domain Architecture
Description	BAG family molecular chaperone regulator 3 (BCL-2-binding athanogene- 3) (BAG-3) (Bcl-2-binding protein Bis) (Docking protein CAIR-1).

MILK1_MOUSE
NC score	0.016915 (rank : 411)	θ value	4.03905 (rank : 379)
Query Neighborhood Hits	434	Target Neighborhood Hits	788	Shared Neighborhood Hits	65
SwissProt Accessions	Q8BGT6, Q8BJ60	Gene names	Mirab13, D15Mit260, Kiaa1668
Domain Architecture
Description	Molecule interacting with Rab13 (MIRab13) (MICAL-like protein 1).

IQEC2_HUMAN
NC score	0.016723 (rank : 412)	θ value	1.06291 (rank : 340)
Query Neighborhood Hits	434	Target Neighborhood Hits	403	Shared Neighborhood Hits	28
SwissProt Accessions	Q5JU85, O60275	Gene names	IQSEC2, KIAA0522
Domain Architecture	No domain graphic available
Description	IQ motif and Sec7 domain-containing protein 2.

PCLO_MOUSE
NC score	0.015779 (rank : 413)	θ value	3.0926 (rank : 371)
Query Neighborhood Hits	434	Target Neighborhood Hits	2275	Shared Neighborhood Hits	100
SwissProt Accessions	Q9QYX7, Q8CF91, Q8CF92, Q9QYX6, Q9QZJ0	Gene names	Pclo, Acz
Domain Architecture
Description	Protein piccolo (Aczonin) (Multidomain presynaptic cytomatrix protein) (Brain-derived HLMN protein).

IQEC2_MOUSE
NC score	0.015598 (rank : 414)	θ value	1.06291 (rank : 341)
Query Neighborhood Hits	434	Target Neighborhood Hits	417	Shared Neighborhood Hits	27
SwissProt Accessions	Q5DU25	Gene names	Iqsec2, Kiaa0522
Domain Architecture	No domain graphic available
Description	IQ motif and Sec7 domain-containing protein 2.

HRG_HUMAN
NC score	0.015585 (rank : 415)	θ value	5.27518 (rank : 391)
Query Neighborhood Hits	434	Target Neighborhood Hits	43	Shared Neighborhood Hits	6
SwissProt Accessions	P04196	Gene names	HRG
Domain Architecture
Description	Histidine-rich glycoprotein precursor (Histidine-proline-rich glycoprotein) (HPRG).

FHOD1_MOUSE
NC score	0.014751 (rank : 416)	θ value	1.06291 (rank : 339)
Query Neighborhood Hits	434	Target Neighborhood Hits	217	Shared Neighborhood Hits	21
SwissProt Accessions	Q6P9Q4, Q8BMK2	Gene names	Fhod1, Fhos1
Domain Architecture	No domain graphic available
Description	FH1/FH2 domain-containing protein (Formin homolog overexpressed in spleen) (FHOS) (Formin homology 2 domain-containing protein 1).

TAF4_HUMAN
NC score	0.014539 (rank : 417)	θ value	5.27518 (rank : 397)
Query Neighborhood Hits	434	Target Neighborhood Hits	687	Shared Neighborhood Hits	35
SwissProt Accessions	O00268, Q5TBP6, Q99721, Q9BR40, Q9BX42	Gene names	TAF4, TAF2C, TAF2C1, TAF4A, TAFII130, TAFII135
Domain Architecture
Description	Transcription initiation factor TFIID subunit 4 (TBP-associated factor 4) (Transcription initiation factor TFIID 135 kDa subunit) (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130) (TAFII130).

ARI1A_HUMAN
NC score	0.014431 (rank : 418)	θ value	5.27518 (rank : 387)
Query Neighborhood Hits	434	Target Neighborhood Hits	787	Shared Neighborhood Hits	53
SwissProt Accessions	O14497, Q53FK9, Q5T0W1, Q5T0W2, Q5T0W3, Q8NFD6, Q96T89, Q9BY33, Q9HBJ5, Q9UPZ1	Gene names	ARID1A, C1orf4, OSA1, SMARCF1
Domain Architecture
Description	AT-rich interactive domain-containing protein 1A (ARID domain- containing protein 1A) (SWI/SNF-related, matrix-associated, actin- dependent regulator of chromatin subfamily F member 1) (SWI-SNF complex protein p270) (B120) (SWI-like protein) (Osa homolog 1) (hOSA1) (hELD) (BRG1-associated factor 250) (BAF250) (BRG1-associated factor 250a) (BAF250A).

MLL3_MOUSE
NC score	0.013626 (rank : 419)	θ value	3.0926 (rank : 370)
Query Neighborhood Hits	434	Target Neighborhood Hits	1399	Shared Neighborhood Hits	77
SwissProt Accessions	Q8BRH4, Q5YLV9, Q8BK12, Q8C6M3, Q923H5, Q923H6	Gene names	Mll3
Domain Architecture
Description	Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog (EC 2.1.1.43) (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3).

BLNK_MOUSE
NC score	0.013192 (rank : 420)	θ value	0.62314 (rank : 327)
Query Neighborhood Hits	434	Target Neighborhood Hits	296	Shared Neighborhood Hits	18
SwissProt Accessions	Q9QUN3, O88504	Gene names	Blnk, Bash, Ly57, Slp65
Domain Architecture	No domain graphic available
Description	B-cell linker protein (Cytoplasmic adapter protein) (B-cell adapter containing SH2 domain protein) (B-cell adapter containing Src homology 2 domain protein) (Src homology 2 domain-containing leukocyte protein of 65 kDa) (Slp-65) (Lymphocyte antigen 57).

TF7L1_MOUSE
NC score	0.012418 (rank : 421)	θ value	0.62314 (rank : 330)
Query Neighborhood Hits	434	Target Neighborhood Hits	131	Shared Neighborhood Hits	7
SwissProt Accessions	Q9Z1J1, O70450, O70573	Gene names	Tcf7l1, Tcf3
Domain Architecture
Description	Transcription factor 7-like 1 (HMG box transcription factor 3) (TCF-3) (mTCF-3).

PLS4_MOUSE
NC score	0.011933 (rank : 422)	θ value	1.81305 (rank : 354)
Query Neighborhood Hits	434	Target Neighborhood Hits	34	Shared Neighborhood Hits	6
SwissProt Accessions	P58196, Q3TMI2, Q8BH62	Gene names	Plscr4
Domain Architecture	No domain graphic available
Description	Phospholipid scramblase 4 (PL scramblase 4) (Ca(2+)-dependent phospholipid scramblase 4).

MUCDL_HUMAN
NC score	0.011825 (rank : 423)	θ value	1.81305 (rank : 353)
Query Neighborhood Hits	434	Target Neighborhood Hits	777	Shared Neighborhood Hits	55
SwissProt Accessions	Q9HBB8, Q9H746, Q9HAU3, Q9HBB5, Q9HBB6, Q9HBB7, Q9NX86, Q9NXI9	Gene names	MUCDHL
Domain Architecture
Description	Mucin and cadherin-like protein precursor (Mu-protocadherin).

INP5E_HUMAN
NC score	0.011312 (rank : 424)	θ value	6.88961 (rank : 406)
Query Neighborhood Hits	434	Target Neighborhood Hits	201	Shared Neighborhood Hits	21
SwissProt Accessions	Q9NRR6, Q15734	Gene names	INPP5E
Domain Architecture
Description	72 kDa inositol polyphosphate 5-phosphatase (EC 3.1.3.36) (Phosphatidylinositol-4,5-bisphosphate 5-phosphatase) (Phosphatidylinositol polyphosphate 5-phosphatase type IV).

NDF1_MOUSE
NC score	0.010991 (rank : 425)	θ value	6.88961 (rank : 412)
Query Neighborhood Hits	434	Target Neighborhood Hits	209	Shared Neighborhood Hits	12
SwissProt Accessions	Q60867, Q545N9, Q60897	Gene names	Neurod1, Neurod
Domain Architecture
Description	Neurogenic differentiation factor 1 (NeuroD1).

NDF1_HUMAN
NC score	0.010690 (rank : 426)	θ value	6.88961 (rank : 411)
Query Neighborhood Hits	434	Target Neighborhood Hits	186	Shared Neighborhood Hits	10
SwissProt Accessions	Q13562, O00343, Q13340, Q5U095, Q96TH0, Q99455, Q9UEC8	Gene names	NEUROD1, NEUROD
Domain Architecture
Description	Neurogenic differentiation factor 1 (NeuroD1) (NeuroD).

SETX_HUMAN
NC score	0.010689 (rank : 427)	θ value	0.813845 (rank : 336)
Query Neighborhood Hits	434	Target Neighborhood Hits	368	Shared Neighborhood Hits	22
SwissProt Accessions	Q7Z333, O75120, Q3KQX4, Q68DW5, Q6AZD7, Q7Z3J6, Q8WX33, Q9H9D1, Q9NVP9	Gene names	SETX, ALS4, KIAA0625, SCAR1
Domain Architecture
Description	Probable helicase senataxin (EC 3.6.1.-) (SEN1 homolog).

WASF4_HUMAN
NC score	0.010634 (rank : 428)	θ value	6.88961 (rank : 421)
Query Neighborhood Hits	434	Target Neighborhood Hits	282	Shared Neighborhood Hits	25
SwissProt Accessions	Q8IV90	Gene names	WASF4, SCAR2
Domain Architecture	No domain graphic available
Description	Wiskott-Aldrich syndrome protein family member 4 (WASP-family protein member 4).

NPHP4_MOUSE
NC score	0.009324 (rank : 429)	θ value	4.03905 (rank : 380)
Query Neighborhood Hits	434	Target Neighborhood Hits	62	Shared Neighborhood Hits	3
SwissProt Accessions	P59240	Gene names	Nphp4
Domain Architecture	No domain graphic available
Description	Nephrocystin-4 (Nephroretinin).

PDC6I_HUMAN
NC score	0.009013 (rank : 430)	θ value	6.88961 (rank : 415)
Query Neighborhood Hits	434	Target Neighborhood Hits	278	Shared Neighborhood Hits	19
SwissProt Accessions	Q8WUM4, Q9BX86, Q9NUN0, Q9P2H2, Q9UKL5	Gene names	PDCD6IP, AIP1, ALIX, KIAA1375
Domain Architecture
Description	Programmed cell death 6-interacting protein (PDCD6-interacting protein) (ALG-2-interacting protein 1) (Hp95).

SMAL1_MOUSE
NC score	0.008470 (rank : 431)	θ value	4.03905 (rank : 385)
Query Neighborhood Hits	434	Target Neighborhood Hits	157	Shared Neighborhood Hits	11
SwissProt Accessions	Q8BJL0, Q8BVK7, Q8BXW4, Q8K309, Q9EQK8, Q9QYC4	Gene names	Smarcal1, Harp
Domain Architecture	No domain graphic available
Description	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 1) (HepA-related protein) (mharp).

CHD9_HUMAN
NC score	0.008401 (rank : 432)	θ value	0.62314 (rank : 328)
Query Neighborhood Hits	434	Target Neighborhood Hits	343	Shared Neighborhood Hits	12
SwissProt Accessions	Q3L8U1, O15025, Q1WF12, Q6DTK9, Q9H9V7	Gene names	CHD9, KIAA0308, KISH2, PRIC320
Domain Architecture	No domain graphic available
Description	Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-) (ATP- dependent helicase CHD9) (CHD-9) (Chromatin-related mesenchymal modulator) (CReMM) (Chromatin remodeling factor CHROM1) (Peroxisomal proliferator-activated receptor A-interacting complex 320 kDa protein) (PPAR-alpha-interacting complex protein 320 kDa) (Kismet homolog 2).

CBX4_HUMAN
NC score	0.008295 (rank : 433)	θ value	2.36792 (rank : 356)
Query Neighborhood Hits	434	Target Neighborhood Hits	68	Shared Neighborhood Hits	4
SwissProt Accessions	O00257, Q96C04	Gene names	CBX4
Domain Architecture
Description	Chromobox protein homolog 4 (Polycomb 2 homolog) (Pc2) (hPc2).

ALEX_MOUSE
NC score	0.008145 (rank : 434)	θ value	4.03905 (rank : 373)
Query Neighborhood Hits	434	Target Neighborhood Hits	197	Shared Neighborhood Hits	13
SwissProt Accessions	Q6R0H6, Q8BIR3	Gene names	Gnas, Gnas1
Domain Architecture	No domain graphic available
Description	Protein ALEX (Alternative gene product encoded by XL-exon).

CHD9_MOUSE
NC score	0.008036 (rank : 435)	θ value	1.06291 (rank : 338)
Query Neighborhood Hits	434	Target Neighborhood Hits	427	Shared Neighborhood Hits	18
SwissProt Accessions	Q8BYH8, Q7TMV5, Q8BJG8, Q8BZJ2, Q8CHG8	Gene names	Chd9, Kiaa0308, Pric320
Domain Architecture	No domain graphic available
Description	Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-) (ATP- dependent helicase CHD9) (CHD-9) (Peroxisomal proliferator-activated receptor A-interacting complex 320 kDa protein) (PPAR-alpha- interacting complex protein 320 kDa).

PRP1_HUMAN
NC score	0.007526 (rank : 436)	θ value	6.88961 (rank : 416)
Query Neighborhood Hits	434	Target Neighborhood Hits	385	Shared Neighborhood Hits	23
SwissProt Accessions	P04280, Q08805, Q15186, Q15187, Q15214, Q15215, Q16038	Gene names	PRB1
Domain Architecture	No domain graphic available
Description	Basic salivary proline-rich protein 1 precursor (Salivary proline-rich protein) [Contains: Basic peptide IB-6; Peptide P-H].

US6NL_HUMAN
NC score	0.007077 (rank : 437)	θ value	2.36792 (rank : 366)
Query Neighborhood Hits	434	Target Neighborhood Hits	201	Shared Neighborhood Hits	21
SwissProt Accessions	Q92738, Q15400, Q7L0K9	Gene names	USP6NL, KIAA0019
Domain Architecture	No domain graphic available
Description	USP6 N-terminal-like protein (Related to the N-terminus of tre) (RN- tre).

SYN3_MOUSE
NC score	0.006654 (rank : 438)	θ value	2.36792 (rank : 365)
Query Neighborhood Hits	434	Target Neighborhood Hits	200	Shared Neighborhood Hits	14
SwissProt Accessions	Q8JZP2	Gene names	Syn3
Domain Architecture	No domain graphic available
Description	Synapsin-3 (Synapsin III).

PTC1_MOUSE
NC score	0.006563 (rank : 439)	θ value	6.88961 (rank : 417)
Query Neighborhood Hits	434	Target Neighborhood Hits	43	Shared Neighborhood Hits	6
SwissProt Accessions	Q61115	Gene names	Ptch1, Ptch
Domain Architecture
Description	Protein patched homolog 1 (PTC1) (PTC).

NFAC3_MOUSE
NC score	0.006261 (rank : 440)	θ value	2.36792 (rank : 357)
Query Neighborhood Hits	434	Target Neighborhood Hits	106	Shared Neighborhood Hits	5
SwissProt Accessions	P97305, Q60896	Gene names	Nfatc3, Nfat4
Domain Architecture
Description	Nuclear factor of activated T-cells, cytoplasmic 3 (NF-ATc3) (NFATc3) (T cell transcription factor NFAT4) (NF-AT4) (NFATx).

TF7L1_HUMAN
NC score	0.006140 (rank : 441)	θ value	6.88961 (rank : 418)
Query Neighborhood Hits	434	Target Neighborhood Hits	129	Shared Neighborhood Hits	5
SwissProt Accessions	Q9HCS4, Q53R97, Q6PD70, Q9NP00	Gene names	TCF7L1, TCF3
Domain Architecture
Description	Transcription factor 7-like 1 (HMG box transcription factor 3) (TCF- 3).

PEF1_MOUSE
NC score	0.005832 (rank : 442)	θ value	2.36792 (rank : 361)
Query Neighborhood Hits	434	Target Neighborhood Hits	112	Shared Neighborhood Hits	7
SwissProt Accessions	Q8BFY6, Q8VCT5, Q9CYW8, Q9D934	Gene names	Pef1
Domain Architecture	No domain graphic available
Description	Peflin (PEF protein with a long N-terminal hydrophobic domain) (Penta- EF hand domain-containing protein 1).

TBX15_MOUSE
NC score	0.005788 (rank : 443)	θ value	1.38821 (rank : 352)
Query Neighborhood Hits	434	Target Neighborhood Hits	54	Shared Neighborhood Hits	5
SwissProt Accessions	O70306, O54840	Gene names	Tbx15, Tbx14, Tbx8
Domain Architecture
Description	T-box transcription factor TBX15 (T-box protein 15) (MmTBx8).

PTC1_HUMAN
NC score	0.005709 (rank : 444)	θ value	8.99809 (rank : 428)
Query Neighborhood Hits	434	Target Neighborhood Hits	37	Shared Neighborhood Hits	5
SwissProt Accessions	Q13635, Q13463, Q5VZC0	Gene names	PTCH1, PTCH
Domain Architecture
Description	Protein patched homolog 1 (PTC1) (PTC).

BCAR1_MOUSE
NC score	0.005617 (rank : 445)	θ value	8.99809 (rank : 424)
Query Neighborhood Hits	434	Target Neighborhood Hits	438	Shared Neighborhood Hits	35
SwissProt Accessions	Q61140, Q60869	Gene names	Bcar1, Cas, Crkas
Domain Architecture
Description	Breast cancer anti-estrogen resistance protein 1 (CRK-associated substrate) (p130cas).

EOMES_MOUSE
NC score	0.005596 (rank : 446)	θ value	1.38821 (rank : 348)
Query Neighborhood Hits	434	Target Neighborhood Hits	59	Shared Neighborhood Hits	6
SwissProt Accessions	O54839, Q9QYG7	Gene names	Eomes, Tbr2
Domain Architecture
Description	Eomesodermin homolog.

CREB5_HUMAN
NC score	0.005366 (rank : 447)	θ value	4.03905 (rank : 374)
Query Neighborhood Hits	434	Target Neighborhood Hits	222	Shared Neighborhood Hits	14
SwissProt Accessions	Q02930, Q05886, Q06246	Gene names	CREB5, CREBPA
Domain Architecture
Description	cAMP response element-binding protein 5 (CRE-BPa).

WASF3_HUMAN
NC score	0.005080 (rank : 448)	θ value	8.99809 (rank : 433)
Query Neighborhood Hits	434	Target Neighborhood Hits	204	Shared Neighborhood Hits	21
SwissProt Accessions	Q9UPY6, O94974	Gene names	WASF3, KIAA0900, SCAR3, WAVE3
Domain Architecture
Description	Wiskott-Aldrich syndrome protein family member 3 (WASP-family protein member 3) (Protein WAVE-3) (Verprolin homology domain-containing protein 3).

SRRM1_HUMAN
NC score	0.004625 (rank : 449)	θ value	4.03905 (rank : 386)
Query Neighborhood Hits	434	Target Neighborhood Hits	690	Shared Neighborhood Hits	34
SwissProt Accessions	Q8IYB3, O60585, Q5VVN4	Gene names	SRRM1, SRM160
Domain Architecture	No domain graphic available
Description	Serine/arginine repetitive matrix protein 1 (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160).

GA2L1_MOUSE
NC score	0.004420 (rank : 450)	θ value	3.0926 (rank : 368)
Query Neighborhood Hits	434	Target Neighborhood Hits	114	Shared Neighborhood Hits	8
SwissProt Accessions	Q8JZP9, Q5SVG0, Q8K573	Gene names	Gas2l1
Domain Architecture	No domain graphic available
Description	GAS2-like protein 1 (Growth arrest-specific 2-like 1).

SRRM2_HUMAN
NC score	0.004220 (rank : 451)	θ value	3.0926 (rank : 372)
Query Neighborhood Hits	434	Target Neighborhood Hits	1296	Shared Neighborhood Hits	55
SwissProt Accessions	Q9UQ35, O15038, O94803, Q6NSL3, Q6PIM3, Q6PK40, Q8IW17, Q96GY7, Q9P0G1, Q9UHA8, Q9UQ36, Q9UQ37, Q9UQ38, Q9UQ40	Gene names	SRRM2, KIAA0324, SRL300, SRM300
Domain Architecture	No domain graphic available
Description	Serine/arginine repetitive matrix protein 2 (Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa) (Ser/Arg- related nuclear matrix protein) (SR-related nuclear matrix protein of 300 kDa) (Splicing coactivator subunit SRm300) (300 kDa nuclear matrix antigen).

K0423_HUMAN
NC score	0.003960 (rank : 452)	θ value	6.88961 (rank : 408)
Query Neighborhood Hits	434	Target Neighborhood Hits	171	Shared Neighborhood Hits	8
SwissProt Accessions	Q9Y4F4, Q68D66, Q6PG27	Gene names	KIAA0423
Domain Architecture	No domain graphic available
Description	Protein KIAA0423.

JHD2C_MOUSE
NC score	0.003829 (rank : 453)	θ value	6.88961 (rank : 407)
Query Neighborhood Hits	434	Target Neighborhood Hits	297	Shared Neighborhood Hits	14
SwissProt Accessions	Q69ZK6, Q6NV48, Q8BUF5, Q8C4I5, Q8C5Q9	Gene names	Jmjd1c, Jhdm2c, Kiaa1380
Domain Architecture	No domain graphic available
Description	Probable JmjC domain-containing histone demethylation protein 2C (EC 1.14.11.-) (Jumonji domain-containing protein 1C).

TBX15_HUMAN
NC score	0.003788 (rank : 454)	θ value	5.27518 (rank : 398)
Query Neighborhood Hits	434	Target Neighborhood Hits	54	Shared Neighborhood Hits	5
SwissProt Accessions	Q96SF7, Q5T9S7	Gene names	TBX15, TBX14
Domain Architecture	No domain graphic available
Description	T-box transcription factor TBX15 (T-box protein 15).

TRIPC_HUMAN
NC score	0.003701 (rank : 455)	θ value	6.88961 (rank : 419)
Query Neighborhood Hits	434	Target Neighborhood Hits	319	Shared Neighborhood Hits	16
SwissProt Accessions	Q14669, Q15644	Gene names	TRIP12, KIAA0045
Domain Architecture
Description	Thyroid receptor-interacting protein 12 (TRIP12).

SEBP2_HUMAN
NC score	0.003585 (rank : 456)	θ value	8.99809 (rank : 430)
Query Neighborhood Hits	434	Target Neighborhood Hits	88	Shared Neighborhood Hits	4
SwissProt Accessions	Q96T21, Q8IYC0	Gene names	SECISBP2, SBP2
Domain Architecture
Description	SECIS-binding protein 2 (Selenocysteine insertion sequence-binding protein 2).

NPAS2_HUMAN
NC score	0.003100 (rank : 457)	θ value	2.36792 (rank : 358)
Query Neighborhood Hits	434	Target Neighborhood Hits	150	Shared Neighborhood Hits	5
SwissProt Accessions	Q99743, Q99629	Gene names	NPAS2
Domain Architecture
Description	Neuronal PAS domain-containing protein 2 (Neuronal PAS2) (Member of PAS protein 4) (MOP4).

DVL3_HUMAN
NC score	0.002754 (rank : 458)	θ value	5.27518 (rank : 388)
Query Neighborhood Hits	434	Target Neighborhood Hits	194	Shared Neighborhood Hits	10
SwissProt Accessions	Q92997, O14642, Q13531, Q8N5E9, Q92607	Gene names	DVL3, KIAA0208
Domain Architecture
Description	Segment polarity protein dishevelled homolog DVL-3 (Dishevelled-3) (DSH homolog 3).

XRN1_MOUSE
NC score	0.002694 (rank : 459)	θ value	8.99809 (rank : 434)
Query Neighborhood Hits	434	Target Neighborhood Hits	64	Shared Neighborhood Hits	3
SwissProt Accessions	P97789, O35651, P97790, Q3TE44, Q3TRE9, Q3UQL5	Gene names	Xrn1, Dhm2, Exo, Sep1
Domain Architecture	No domain graphic available
Description	5'-3' exoribonuclease 1 (EC 3.1.11.-) (mXRN1) (Strand-exchange protein 1 homolog) (Protein Dhm2).

FUBP1_MOUSE
NC score	0.002654 (rank : 460)	θ value	5.27518 (rank : 390)
Query Neighborhood Hits	434	Target Neighborhood Hits	144	Shared Neighborhood Hits	8
SwissProt Accessions	Q91WJ8, Q8C0Y8	Gene names	Fubp1, D3Ertd330e
Domain Architecture
Description	Far upstream element-binding protein 1 (FUSE-binding protein 1) (FBP).

K1802_HUMAN
NC score	0.002031 (rank : 461)	θ value	4.03905 (rank : 377)
Query Neighborhood Hits	434	Target Neighborhood Hits	1378	Shared Neighborhood Hits	63
SwissProt Accessions	Q96JM3, Q6P181, Q8NC88, Q9BST0	Gene names	KIAA1802, C13orf8
Domain Architecture	No domain graphic available
Description	Zinc finger protein KIAA1802.

TTLL7_HUMAN
NC score	0.001168 (rank : 462)	θ value	8.99809 (rank : 432)
Query Neighborhood Hits	434	Target Neighborhood Hits	95	Shared Neighborhood Hits	4
SwissProt Accessions	Q6ZT98, Q5TAX8, Q5TAX9, Q6P990, Q86YS1, Q9H5U4	Gene names	TTLL7
Domain Architecture	No domain graphic available
Description	Tubulin--tyrosine ligase-like protein 7 (Protein NYD-SP30).

WHRN_MOUSE
NC score	0.001053 (rank : 463)	θ value	5.27518 (rank : 399)
Query Neighborhood Hits	434	Target Neighborhood Hits	412	Shared Neighborhood Hits	21
SwissProt Accessions	Q80VW5, Q80TC2, Q80VW4	Gene names	Whrn, Kiaa1526
Domain Architecture	No domain graphic available
Description	Whirlin.

MAGC1_HUMAN
NC score	0.000968 (rank : 464)	θ value	6.88961 (rank : 410)
Query Neighborhood Hits	434	Target Neighborhood Hits	431	Shared Neighborhood Hits	25
SwissProt Accessions	O60732, O75451, Q8TCV4	Gene names	MAGEC1
Domain Architecture
Description	Melanoma-associated antigen C1 (MAGE-C1 antigen) (Cancer-testis antigen CT7).

KCNK4_HUMAN
NC score	0.000891 (rank : 465)	θ value	5.27518 (rank : 392)
Query Neighborhood Hits	434	Target Neighborhood Hits	109	Shared Neighborhood Hits	5
SwissProt Accessions	Q9NYG8, Q96T94	Gene names	KCNK4, TRAAK
Domain Architecture
Description	Potassium channel subfamily K member 4 (TWIK-related arachidonic acid- stimulated potassium channel protein) (TRAAK) (Two pore K(+) channel KT4.1).

FOXC1_HUMAN
NC score	0.000863 (rank : 466)	θ value	5.27518 (rank : 389)
Query Neighborhood Hits	434	Target Neighborhood Hits	208	Shared Neighborhood Hits	14
SwissProt Accessions	Q12948, Q86UP7, Q9BYM1, Q9NUE5, Q9UDD0, Q9UP06	Gene names	FOXC1, FKHL7, FREAC3
Domain Architecture
Description	Forkhead box protein C1 (Forkhead-related protein FKHL7) (Forkhead- related transcription factor 3) (FREAC-3).

LRCH2_HUMAN
NC score	0.000780 (rank : 467)	θ value	1.06291 (rank : 342)
Query Neighborhood Hits	434	Target Neighborhood Hits	315	Shared Neighborhood Hits	3
SwissProt Accessions	Q5VUJ6, Q9HA88, Q9P233	Gene names	LRCH2, KIAA1495
Domain Architecture	No domain graphic available
Description	Leucine-rich repeats and calponin homology domain-containing protein 2.

IF4G1_HUMAN
NC score	0.000724 (rank : 468)	θ value	6.88961 (rank : 405)
Query Neighborhood Hits	434	Target Neighborhood Hits	347	Shared Neighborhood Hits	16
SwissProt Accessions	Q04637, O43177, O95066, Q5HYG0, Q6ZN21, Q8N102	Gene names	EIF4G1, EIF4G, EIF4GI
Domain Architecture
Description	Eukaryotic translation initiation factor 4 gamma 1 (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220).

BMP6_HUMAN
NC score	0.000703 (rank : 469)	θ value	3.0926 (rank : 367)
Query Neighborhood Hits	434	Target Neighborhood Hits	82	Shared Neighborhood Hits	4
SwissProt Accessions	P22004	Gene names	BMP6, VGR
Domain Architecture
Description	Bone morphogenetic protein 6 precursor (BMP-6).

DCJ14_MOUSE
NC score	0.000163 (rank : 470)	θ value	6.88961 (rank : 402)
Query Neighborhood Hits	434	Target Neighborhood Hits	99	Shared Neighborhood Hits	4
SwissProt Accessions	Q921R4, Q3TX73, Q8BUU3, Q9CYB7	Gene names	Dnajc14
Domain Architecture	No domain graphic available
Description	DnaJ homolog subfamily C member 14.

RILP_HUMAN
NC score	0.000108 (rank : 471)	θ value	8.99809 (rank : 429)
Query Neighborhood Hits	434	Target Neighborhood Hits	249	Shared Neighborhood Hits	7
SwissProt Accessions	Q96NA2, Q71RE6, Q9BSL3, Q9BYS3	Gene names	RILP
Domain Architecture	No domain graphic available
Description	Rab-interacting lysosomal protein.

SFPQ_MOUSE
NC score	0.000106 (rank : 472)	θ value	4.03905 (rank : 384)
Query Neighborhood Hits	434	Target Neighborhood Hits	958	Shared Neighborhood Hits	35
SwissProt Accessions	Q8VIJ6, Q9ERW2	Gene names	Sfpq
Domain Architecture	No domain graphic available
Description	Splicing factor, proline- and glutamine-rich (Polypyrimidine tract- binding protein-associated-splicing factor) (PTB-associated-splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit).

NMDE3_MOUSE
NC score	-0.000805 (rank : 473)	θ value	8.99809 (rank : 427)
Query Neighborhood Hits	434	Target Neighborhood Hits	86	Shared Neighborhood Hits	5
SwissProt Accessions	Q01098	Gene names	Grin2c
Domain Architecture
Description	Glutamate [NMDA] receptor subunit epsilon 3 precursor (N-methyl D- aspartate receptor subtype 2C) (NR2C) (NMDAR2C).

ACINU_MOUSE
NC score	-0.000985 (rank : 474)	θ value	8.99809 (rank : 423)
Query Neighborhood Hits	434	Target Neighborhood Hits	712	Shared Neighborhood Hits	22
SwissProt Accessions	Q9JIX8, Q9CSN7, Q9CSR9, Q9CSX7, Q9R046, Q9R047	Gene names	Acin1, Acinus
Domain Architecture
Description	Apoptotic chromatin condensation inducer in the nucleus (Acinus).

KI2S4_HUMAN
NC score	-0.001269 (rank : 475)	θ value	6.88961 (rank : 409)
Query Neighborhood Hits	434	Target Neighborhood Hits	49	Shared Neighborhood Hits	2
SwissProt Accessions	P43632	Gene names	KIR2DS4, CD158I, KKA3, NKAT8
Domain Architecture	No domain graphic available
Description	Killer cell immunoglobulin-like receptor 2DS4 precursor (MHC class I NK cell receptor) (Natural killer-associated transcript 8) (NKAT-8) (P58 natural killer cell receptor clone CL-39) (p58 NK receptor) (CL- 17) (CD158i antigen).

SKI_MOUSE
NC score	-0.001432 (rank : 476)	θ value	8.99809 (rank : 431)
Query Neighborhood Hits	434	Target Neighborhood Hits	423	Shared Neighborhood Hits	9
SwissProt Accessions	Q60698, Q8VIL5	Gene names	Ski
Domain Architecture	No domain graphic available
Description	Ski oncogene (C-ski).

FOXC2_MOUSE
NC score	-0.001588 (rank : 477)	θ value	8.99809 (rank : 425)
Query Neighborhood Hits	434	Target Neighborhood Hits	124	Shared Neighborhood Hits	7
SwissProt Accessions	Q61850, P97948, Q63869, Q8C694	Gene names	Foxc2, Fkh14, Fkhl14, Mfh1
Domain Architecture
Description	Forkhead box protein C2 (Forkhead-related protein FKHL14) (Mesenchyme fork head protein 1) (MFH-1 protein) (Transcription factor FKH-14).

LRP5_HUMAN
NC score	-0.002141 (rank : 478)	θ value	4.03905 (rank : 378)
Query Neighborhood Hits	434	Target Neighborhood Hits	224	Shared Neighborhood Hits	4
SwissProt Accessions	O75197, Q96TD6, Q9UP66	Gene names	LRP5, LRP7
Domain Architecture
Description	Low-density lipoprotein receptor-related protein 5 precursor.

BCOR_MOUSE
NC score	-0.003090 (rank : 479)	θ value	6.88961 (rank : 401)
Query Neighborhood Hits	434	Target Neighborhood Hits	521	Shared Neighborhood Hits	16
SwissProt Accessions	Q8CGN4, Q6PDK5, Q6ZPM3, Q8BKF5, Q8CGN1, Q8CGN2, Q8CGN3	Gene names	Bcor, Kiaa1575
Domain Architecture	No domain graphic available
Description	BCoR protein (BCL-6 corepressor).

FOG1_MOUSE
NC score	-0.005875 (rank : 480)	θ value	4.03905 (rank : 375)
Query Neighborhood Hits	434	Target Neighborhood Hits	1237	Shared Neighborhood Hits	52
SwissProt Accessions	O35615	Gene names	Zfpm1, Fog, Fog1
Domain Architecture	No domain graphic available
Description	Zinc finger protein ZFPM1 (Zinc finger protein multitype 1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1).

REM1_MOUSE
NC score	-0.006363 (rank : 481)	θ value	5.27518 (rank : 396)
Query Neighborhood Hits	434	Target Neighborhood Hits	255	Shared Neighborhood Hits	3
SwissProt Accessions	O35929	Gene names	Rem1, Rem
Domain Architecture
Description	GTP-binding protein REM 1 (Rad and Gem-like GTP-binding protein 1).

WNK4_HUMAN
NC score	-0.010565 (rank : 482)	θ value	0.62314 (rank : 331)
Query Neighborhood Hits	434	Target Neighborhood Hits	1043	Shared Neighborhood Hits	21
SwissProt Accessions	Q96J92, Q8N8X3, Q8N8Z2, Q96DT8, Q9BYS5	Gene names	WNK4, PRKWNK4
Domain Architecture
Description	Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein kinase with no lysine 4) (Protein kinase, lysine-deficient 4).

TTBK2_MOUSE
NC score	-0.011181 (rank : 483)	θ value	6.88961 (rank : 420)
Query Neighborhood Hits	434	Target Neighborhood Hits	811	Shared Neighborhood Hits	10
SwissProt Accessions	Q3UVR3, Q3TSR6, Q3UFW0, Q571D1, Q8BKA4, Q924U8	Gene names	Ttbk2, Kiaa0847, Ttbk1
Domain Architecture	No domain graphic available
Description	Tau-tubulin kinase 2.

ZIC5_HUMAN
NC score	-0.013726 (rank : 484)	θ value	6.88961 (rank : 422)
Query Neighborhood Hits	434	Target Neighborhood Hits	774	Shared Neighborhood Hits	15
SwissProt Accessions	Q96T25	Gene names	ZIC5
Domain Architecture	No domain graphic available
Description	Zinc finger protein ZIC 5 (Zinc finger protein of the cerebellum 5).

M3K13_HUMAN
NC score	-0.016124 (rank : 485)	θ value	5.27518 (rank : 393)
Query Neighborhood Hits	434	Target Neighborhood Hits	911	Shared Neighborhood Hits	13
SwissProt Accessions	O43283	Gene names	MAP3K13, LZK
Domain Architecture	No domain graphic available
Description	Mitogen-activated protein kinase kinase kinase 13 (EC 2.7.11.25) (Mixed lineage kinase) (MLK) (Leucine zipper-bearing kinase).