Please be patient as the page loads

Stop Image Loading/Displaying

Network neighborhood for query Sequence : IRX4_HUMAN

For an explanation of this page, click here

IRX4_HUMAN
SwissProt Accessions	P78413, Q9UHR2	Gene names	IRX4, IRXA3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).
Rank Plots	Jump to hits sorted by θ Jump to hits sorted by NC score

Hits sorted by θ

IRX4_HUMAN
θ value	0 (rank : 1)	NC score	0.999962 (rank : 1)
Query Neighborhood Hits	276	Target Neighborhood Hits	276	Shared Neighborhood Hits	276
SwissProt Accessions	P78413, Q9UHR2	Gene names	IRX4, IRXA3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

IRX4_MOUSE
θ value	0 (rank : 2)	NC score	0.993446 (rank : 2)
Query Neighborhood Hits	276	Target Neighborhood Hits	286	Shared Neighborhood Hits	261
SwissProt Accessions	Q9QY61	Gene names	Irx4, Irxa3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

IRX6_MOUSE
θ value	4.38363e-63 (rank : 3)	NC score	0.950733 (rank : 4)
Query Neighborhood Hits	276	Target Neighborhood Hits	256	Shared Neighborhood Hits	232
SwissProt Accessions	Q9ER75	Gene names	Irx6, Irxb3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

IRX6_HUMAN
θ value	1.84601e-53 (rank : 4)	NC score	0.952570 (rank : 3)
Query Neighborhood Hits	276	Target Neighborhood Hits	262	Shared Neighborhood Hits	238
SwissProt Accessions	P78412, Q7Z2K0	Gene names	IRX6, IRX7, IRXB3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

IRX5_HUMAN
θ value	8.04462e-41 (rank : 5)	NC score	0.900078 (rank : 12)
Query Neighborhood Hits	276	Target Neighborhood Hits	362	Shared Neighborhood Hits	218
SwissProt Accessions	P78411, P78416, Q7Z2E1	Gene names	IRX5, IRX2A, IRXB2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2) (IRX-2A).

IRX2_HUMAN
θ value	5.21438e-40 (rank : 6)	NC score	0.905142 (rank : 10)
Query Neighborhood Hits	276	Target Neighborhood Hits	358	Shared Neighborhood Hits	223
SwissProt Accessions	Q9BZI1, Q7Z2I7	Gene names	IRX2, IRXA2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

IRX5_MOUSE
θ value	8.89434e-40 (rank : 7)	NC score	0.900703 (rank : 11)
Query Neighborhood Hits	276	Target Neighborhood Hits	324	Shared Neighborhood Hits	217
SwissProt Accessions	Q9JKQ4, Q80WV4, Q9JLL5	Gene names	Irx5, Irxb2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2).

IRX2_MOUSE
θ value	1.57e-36 (rank : 8)	NC score	0.909687 (rank : 7)
Query Neighborhood Hits	276	Target Neighborhood Hits	264	Shared Neighborhood Hits	215
SwissProt Accessions	P81066, O55121, Q9ERN1	Gene names	Irx2, Irxa2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

IRX3_MOUSE
θ value	1.01765e-35 (rank : 9)	NC score	0.912875 (rank : 5)
Query Neighborhood Hits	276	Target Neighborhood Hits	303	Shared Neighborhood Hits	218
SwissProt Accessions	P81067	Gene names	Irx3, Irxb1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

IRX3_HUMAN
θ value	1.46948e-34 (rank : 10)	NC score	0.909784 (rank : 6)
Query Neighborhood Hits	276	Target Neighborhood Hits	342	Shared Neighborhood Hits	219
SwissProt Accessions	P78415, Q7Z4A4, Q7Z4A5, Q8IVC6	Gene names	IRX3, IRXB1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

IRX1_MOUSE
θ value	1.24399e-33 (rank : 11)	NC score	0.907501 (rank : 8)
Query Neighborhood Hits	276	Target Neighborhood Hits	269	Shared Neighborhood Hits	220
SwissProt Accessions	P81068, O55120, Q9JLL6	Gene names	Irx1, Irxa1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

IRX1_HUMAN
θ value	2.77131e-33 (rank : 12)	NC score	0.906036 (rank : 9)
Query Neighborhood Hits	276	Target Neighborhood Hits	285	Shared Neighborhood Hits	221
SwissProt Accessions	P78414, Q7Z2F8, Q8N312	Gene names	IRX1, IRXA1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

TGIF_HUMAN
θ value	2.79066e-09 (rank : 13)	NC score	0.627949 (rank : 14)
Query Neighborhood Hits	276	Target Neighborhood Hits	109	Shared Neighborhood Hits	67
SwissProt Accessions	Q15583, Q6ICR0, Q8N5X9, Q9NRS0	Gene names	TGIF
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

TGIF_MOUSE
θ value	3.64472e-09 (rank : 14)	NC score	0.634040 (rank : 13)
Query Neighborhood Hits	276	Target Neighborhood Hits	125	Shared Neighborhood Hits	68
SwissProt Accessions	P70284, Q921F9, Q99JS3	Gene names	Tgif
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

PKNX2_HUMAN
θ value	1.80886e-08 (rank : 15)	NC score	0.570422 (rank : 21)
Query Neighborhood Hits	276	Target Neighborhood Hits	133	Shared Neighborhood Hits	89
SwissProt Accessions	Q96KN3, Q63HL6, Q86XD1	Gene names	PKNOX2, PREP2
Domain Architecture
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

PKNX2_MOUSE
θ value	1.80886e-08 (rank : 16)	NC score	0.565026 (rank : 22)
Query Neighborhood Hits	276	Target Neighborhood Hits	197	Shared Neighborhood Hits	91
SwissProt Accessions	Q8BG99, Q8R4B0	Gene names	Pknox2, Prep2
Domain Architecture	No domain graphic available
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

PKNX1_HUMAN
θ value	5.26297e-08 (rank : 17)	NC score	0.575351 (rank : 20)
Query Neighborhood Hits	276	Target Neighborhood Hits	101	Shared Neighborhood Hits	78
SwissProt Accessions	P55347, O00528, Q8IWT7	Gene names	PKNOX1, PREP1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1) (Homeobox protein PREP-1).

PKNX1_MOUSE
θ value	5.26297e-08 (rank : 18)	NC score	0.578405 (rank : 19)
Query Neighborhood Hits	276	Target Neighborhood Hits	103	Shared Neighborhood Hits	79
SwissProt Accessions	O70477	Gene names	Pknox1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1).

TGIF2_HUMAN
θ value	1.17247e-07 (rank : 19)	NC score	0.617275 (rank : 17)
Query Neighborhood Hits	276	Target Neighborhood Hits	94	Shared Neighborhood Hits	68
SwissProt Accessions	Q9GZN2	Gene names	TGIF2
Domain Architecture
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

TGIF2_MOUSE
θ value	1.17247e-07 (rank : 20)	NC score	0.614797 (rank : 18)
Query Neighborhood Hits	276	Target Neighborhood Hits	127	Shared Neighborhood Hits	73
SwissProt Accessions	Q8C0Y1	Gene names	Tgif2
Domain Architecture	No domain graphic available
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

TF2LX_HUMAN
θ value	2.61198e-07 (rank : 21)	NC score	0.626842 (rank : 15)
Query Neighborhood Hits	276	Target Neighborhood Hits	108	Shared Neighborhood Hits	74
SwissProt Accessions	Q8IUE1	Gene names	TGIF2LX, TGIFLX
Domain Architecture
Description	Homeobox protein TGIF2LX (TGFB-induced factor 2-like protein, X- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the X).

MEIS3_HUMAN
θ value	4.45536e-07 (rank : 22)	NC score	0.545282 (rank : 24)
Query Neighborhood Hits	276	Target Neighborhood Hits	118	Shared Neighborhood Hits	78
SwissProt Accessions	Q99687, Q6NT73, Q8TC66, Q9NPW2	Gene names	MEIS3, MRG2
Domain Architecture	No domain graphic available
Description	Homeobox protein Meis3 (Meis1-related protein 2).

MEIS3_MOUSE
θ value	4.45536e-07 (rank : 23)	NC score	0.543696 (rank : 25)
Query Neighborhood Hits	276	Target Neighborhood Hits	118	Shared Neighborhood Hits	81
SwissProt Accessions	P97368, Q99L81	Gene names	Meis3, Mrg2
Domain Architecture
Description	Homeobox protein Meis3 (Meis1-related protein 2).

MEIS1_HUMAN
θ value	5.81887e-07 (rank : 24)	NC score	0.533136 (rank : 31)
Query Neighborhood Hits	276	Target Neighborhood Hits	115	Shared Neighborhood Hits	81
SwissProt Accessions	O00470	Gene names	MEIS1
Domain Architecture
Description	Homeobox protein Meis1.

MEIS1_MOUSE
θ value	5.81887e-07 (rank : 25)	NC score	0.533138 (rank : 30)
Query Neighborhood Hits	276	Target Neighborhood Hits	115	Shared Neighborhood Hits	81
SwissProt Accessions	Q60954, Q5SVC8, Q60955, Q8CIL0	Gene names	Meis1
Domain Architecture
Description	Homeobox protein Meis1 (Myeloid ecotropic viral integration site 1).

TF2LY_HUMAN
θ value	7.59969e-07 (rank : 26)	NC score	0.624620 (rank : 16)
Query Neighborhood Hits	276	Target Neighborhood Hits	90	Shared Neighborhood Hits	67
SwissProt Accessions	Q8IUE0	Gene names	TGIF2LY, TGIFLY
Domain Architecture
Description	Homeobox protein TGIF2LY (TGFB-induced factor 2-like protein, Y- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the Y).

MEIS2_HUMAN
θ value	1.29631e-06 (rank : 27)	NC score	0.524086 (rank : 34)
Query Neighborhood Hits	276	Target Neighborhood Hits	182	Shared Neighborhood Hits	88
SwissProt Accessions	O14770, Q96KI4, Q96KI5, Q9NRS1, Q9NRS2, Q9NRS3	Gene names	MEIS2, MRG1
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

MEIS2_MOUSE
θ value	1.29631e-06 (rank : 28)	NC score	0.521915 (rank : 35)
Query Neighborhood Hits	276	Target Neighborhood Hits	208	Shared Neighborhood Hits	88
SwissProt Accessions	P97367, O35676, O35677, P97403, P97404	Gene names	Meis2, Mrg1, Stra10
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

PBX3_HUMAN
θ value	1.29631e-06 (rank : 29)	NC score	0.537951 (rank : 29)
Query Neighborhood Hits	276	Target Neighborhood Hits	306	Shared Neighborhood Hits	233
SwissProt Accessions	P40426, Q96PF9, Q96PG0	Gene names	PBX3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX3_MOUSE
θ value	1.29631e-06 (rank : 30)	NC score	0.537990 (rank : 28)
Query Neighborhood Hits	276	Target Neighborhood Hits	306	Shared Neighborhood Hits	233
SwissProt Accessions	O35317, Q925W2	Gene names	Pbx3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX2_HUMAN
θ value	1.69304e-06 (rank : 31)	NC score	0.538611 (rank : 27)
Query Neighborhood Hits	276	Target Neighborhood Hits	350	Shared Neighborhood Hits	230
SwissProt Accessions	P40425	Gene names	PBX2, G17
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2) (Protein G17).

PBX2_MOUSE
θ value	1.69304e-06 (rank : 32)	NC score	0.538669 (rank : 26)
Query Neighborhood Hits	276	Target Neighborhood Hits	341	Shared Neighborhood Hits	230
SwissProt Accessions	O35984	Gene names	Pbx2
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2).

PBX4_MOUSE
θ value	2.21117e-06 (rank : 33)	NC score	0.552584 (rank : 23)
Query Neighborhood Hits	276	Target Neighborhood Hits	324	Shared Neighborhood Hits	230
SwissProt Accessions	Q99NE9, Q8CFL2, Q99NE8	Gene names	Pbx4
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 4 (Homeobox protein PBX4).

PBX1_HUMAN
θ value	2.88788e-06 (rank : 34)	NC score	0.527404 (rank : 32)
Query Neighborhood Hits	276	Target Neighborhood Hits	317	Shared Neighborhood Hits	226
SwissProt Accessions	P40424	Gene names	PBX1, PRL
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1) (Homeobox protein PRL).

PBX1_MOUSE
θ value	2.88788e-06 (rank : 35)	NC score	0.527404 (rank : 33)
Query Neighborhood Hits	276	Target Neighborhood Hits	317	Shared Neighborhood Hits	226
SwissProt Accessions	P41778	Gene names	Pbx1, Pbx-1
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1).

HXB7_HUMAN
θ value	4.1701e-05 (rank : 36)	NC score	0.348959 (rank : 55)
Query Neighborhood Hits	276	Target Neighborhood Hits	311	Shared Neighborhood Hits	231
SwissProt Accessions	P09629, Q15957	Gene names	HOXB7, HOX2C
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2C) (HHO.C1).

SIX4_MOUSE
θ value	4.1701e-05 (rank : 37)	NC score	0.444381 (rank : 38)
Query Neighborhood Hits	276	Target Neighborhood Hits	341	Shared Neighborhood Hits	231
SwissProt Accessions	Q61321, Q61322, Q61323	Gene names	Six4, Arec3
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4) (Skeletal muscle-specific ARE-binding protein AREC3).

HXB7_MOUSE
θ value	5.44631e-05 (rank : 38)	NC score	0.355018 (rank : 52)
Query Neighborhood Hits	276	Target Neighborhood Hits	314	Shared Neighborhood Hits	231
SwissProt Accessions	P09024, Q3UW15	Gene names	Hoxb7, Hox-2.3, Hoxb-7
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2.3) (MUB1) (Homeobox protein MH-22B).

SIX4_HUMAN
θ value	0.000158464 (rank : 39)	NC score	0.431284 (rank : 41)
Query Neighborhood Hits	276	Target Neighborhood Hits	342	Shared Neighborhood Hits	226
SwissProt Accessions	Q9UIU6	Gene names	SIX4
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4).

SIX5_HUMAN
θ value	0.00020696 (rank : 40)	NC score	0.423066 (rank : 42)
Query Neighborhood Hits	276	Target Neighborhood Hits	386	Shared Neighborhood Hits	196
SwissProt Accessions	Q8N196	Gene names	SIX5, DMAHP
Domain Architecture	No domain graphic available
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein).

HXB8_HUMAN
θ value	0.000461057 (rank : 41)	NC score	0.355908 (rank : 50)
Query Neighborhood Hits	276	Target Neighborhood Hits	324	Shared Neighborhood Hits	236
SwissProt Accessions	P17481, Q9H1I2	Gene names	HOXB8, HOX2D
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4).

HXB8_MOUSE
θ value	0.000461057 (rank : 42)	NC score	0.354773 (rank : 53)
Query Neighborhood Hits	276	Target Neighborhood Hits	325	Shared Neighborhood Hits	237
SwissProt Accessions	P09632	Gene names	Hoxb8, Hox-2.4, Hoxb-8
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2.4).

HXA6_HUMAN
θ value	0.000602161 (rank : 43)	NC score	0.348368 (rank : 56)
Query Neighborhood Hits	276	Target Neighborhood Hits	309	Shared Neighborhood Hits	235
SwissProt Accessions	P31267, Q9UPM0	Gene names	HOXA6, HOX1B
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A6 (Hox-1B).

SIX5_MOUSE
θ value	0.000602161 (rank : 44)	NC score	0.400578 (rank : 43)
Query Neighborhood Hits	276	Target Neighborhood Hits	354	Shared Neighborhood Hits	170
SwissProt Accessions	P70178	Gene names	Six5, Dmahp
Domain Architecture
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein homolog).

SIX2_HUMAN
θ value	0.000786445 (rank : 45)	NC score	0.452658 (rank : 37)
Query Neighborhood Hits	276	Target Neighborhood Hits	345	Shared Neighborhood Hits	231
SwissProt Accessions	Q9NPC8, Q9BXH7	Gene names	SIX2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

SIX2_MOUSE
θ value	0.000786445 (rank : 46)	NC score	0.459169 (rank : 36)
Query Neighborhood Hits	276	Target Neighborhood Hits	376	Shared Neighborhood Hits	249
SwissProt Accessions	Q62232, P70179	Gene names	Six2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

HXD8_MOUSE
θ value	0.00134147 (rank : 47)	NC score	0.360977 (rank : 48)
Query Neighborhood Hits	276	Target Neighborhood Hits	333	Shared Neighborhood Hits	237
SwissProt Accessions	P23463	Gene names	Hoxd8, Hox-4.3, Hoxd-8
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4).

HXA7_HUMAN
θ value	0.00228821 (rank : 48)	NC score	0.339559 (rank : 62)
Query Neighborhood Hits	276	Target Neighborhood Hits	309	Shared Neighborhood Hits	230
SwissProt Accessions	P31268, O43368, O43486, O95655, Q9NSC8, Q9UDM1	Gene names	HOXA7, HOX1A
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1).

SIX1_HUMAN
θ value	0.00228821 (rank : 49)	NC score	0.439455 (rank : 40)
Query Neighborhood Hits	276	Target Neighborhood Hits	343	Shared Neighborhood Hits	242
SwissProt Accessions	Q15475, Q96H64	Gene names	SIX1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

SIX1_MOUSE
θ value	0.00228821 (rank : 50)	NC score	0.439717 (rank : 39)
Query Neighborhood Hits	276	Target Neighborhood Hits	341	Shared Neighborhood Hits	242
SwissProt Accessions	Q62231, Q8CIL7	Gene names	Six1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

BSH_MOUSE
θ value	0.00298849 (rank : 51)	NC score	0.349218 (rank : 54)
Query Neighborhood Hits	276	Target Neighborhood Hits	349	Shared Neighborhood Hits	243
SwissProt Accessions	Q810B3	Gene names	Bsx
Domain Architecture	No domain graphic available
Description	Brain-specific homeobox protein homolog.

HXA7_MOUSE
θ value	0.00390308 (rank : 52)	NC score	0.355037 (rank : 51)
Query Neighborhood Hits	276	Target Neighborhood Hits	318	Shared Neighborhood Hits	232
SwissProt Accessions	P02830, Q544P0	Gene names	Hoxa7, Hox-1.1, Hoxa-7
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1.1) (M6-12) (M6).

SIX3_HUMAN
θ value	0.00509761 (rank : 53)	NC score	0.388801 (rank : 44)
Query Neighborhood Hits	276	Target Neighborhood Hits	285	Shared Neighborhood Hits	211
SwissProt Accessions	O95343	Gene names	SIX3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX3_MOUSE
θ value	0.00509761 (rank : 54)	NC score	0.388748 (rank : 45)
Query Neighborhood Hits	276	Target Neighborhood Hits	289	Shared Neighborhood Hits	211
SwissProt Accessions	Q62233, P70176, P70177	Gene names	Six3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

NKX61_HUMAN
θ value	0.0113563 (rank : 55)	NC score	0.336746 (rank : 64)
Query Neighborhood Hits	276	Target Neighborhood Hits	431	Shared Neighborhood Hits	247
SwissProt Accessions	P78426	Gene names	NKX6-1, NKX6A
Domain Architecture
Description	Homeobox protein Nkx-6.1.

PAX4_HUMAN
θ value	0.0113563 (rank : 56)	NC score	0.277820 (rank : 177)
Query Neighborhood Hits	276	Target Neighborhood Hits	367	Shared Neighborhood Hits	245
SwissProt Accessions	O43316, O95161, Q6B0H0	Gene names	PAX4
Domain Architecture
Description	Paired box protein Pax-4.

CP007_MOUSE
θ value	0.0148317 (rank : 57)	NC score	0.054697 (rank : 360)
Query Neighborhood Hits	276	Target Neighborhood Hits	231	Shared Neighborhood Hits	10
SwissProt Accessions	Q8C190, Q6PFD1	Gene names
Domain Architecture	No domain graphic available
Description	Uncharacterized protein C16orf7 homolog (5-day ovary-specific transcript 1 protein).

GSH2_HUMAN
θ value	0.0193708 (rank : 58)	NC score	0.309873 (rank : 84)
Query Neighborhood Hits	276	Target Neighborhood Hits	324	Shared Neighborhood Hits	234
SwissProt Accessions	Q9BZM3	Gene names	GSH2
Domain Architecture
Description	Homeobox protein GSH-2.

SIX6_HUMAN
θ value	0.0193708 (rank : 59)	NC score	0.383650 (rank : 47)
Query Neighborhood Hits	276	Target Neighborhood Hits	269	Shared Neighborhood Hits	198
SwissProt Accessions	O95475, Q9P1X8	Gene names	SIX6, OPTX2, SIX9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Homeodomain protein OPTX2).

SIX6_MOUSE
θ value	0.0193708 (rank : 60)	NC score	0.383840 (rank : 46)
Query Neighborhood Hits	276	Target Neighborhood Hits	267	Shared Neighborhood Hits	196
SwissProt Accessions	Q9QZ28, O88423	Gene names	Six6, Optx2, Six9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Six9 protein).

NKX61_MOUSE
θ value	0.0252991 (rank : 61)	NC score	0.339391 (rank : 63)
Query Neighborhood Hits	276	Target Neighborhood Hits	439	Shared Neighborhood Hits	247
SwissProt Accessions	Q99MA9, Q9ERQ7	Gene names	Nkx6-1, Nkx6.1, Nkx6a
Domain Architecture
Description	Homeobox protein Nkx-6.1.

PAX4_MOUSE
θ value	0.0252991 (rank : 62)	NC score	0.272438 (rank : 184)
Query Neighborhood Hits	276	Target Neighborhood Hits	370	Shared Neighborhood Hits	243
SwissProt Accessions	P32115, P97341, Q9QUR1, Q9R091	Gene names	Pax4, Pax-4
Domain Architecture
Description	Paired box protein Pax-4.

PITX3_HUMAN
θ value	0.0252991 (rank : 63)	NC score	0.312505 (rank : 78)
Query Neighborhood Hits	276	Target Neighborhood Hits	366	Shared Neighborhood Hits	253
SwissProt Accessions	O75364	Gene names	PITX3, PTX3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

PITX3_MOUSE
θ value	0.0252991 (rank : 64)	NC score	0.314016 (rank : 77)
Query Neighborhood Hits	276	Target Neighborhood Hits	380	Shared Neighborhood Hits	254
SwissProt Accessions	O35160	Gene names	Pitx3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

GSH2_MOUSE
θ value	0.0431538 (rank : 65)	NC score	0.309287 (rank : 85)
Query Neighborhood Hits	276	Target Neighborhood Hits	319	Shared Neighborhood Hits	233
SwissProt Accessions	P31316	Gene names	Gsh2, Gsh-2
Domain Architecture
Description	Homeobox protein GSH-2.

HXD8_HUMAN
θ value	0.0431538 (rank : 66)	NC score	0.356584 (rank : 49)
Query Neighborhood Hits	276	Target Neighborhood Hits	338	Shared Neighborhood Hits	237
SwissProt Accessions	P13378	Gene names	HOXD8, HOX4E
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4).

ALX4_HUMAN
θ value	0.0563607 (rank : 67)	NC score	0.282979 (rank : 163)
Query Neighborhood Hits	276	Target Neighborhood Hits	394	Shared Neighborhood Hits	245
SwissProt Accessions	Q9H161, Q96JN7, Q9H198, Q9HAY9	Gene names	ALX4, KIAA1788
Domain Architecture
Description	Homeobox protein aristaless-like 4.

ALX4_MOUSE
θ value	0.0563607 (rank : 68)	NC score	0.284708 (rank : 156)
Query Neighborhood Hits	276	Target Neighborhood Hits	369	Shared Neighborhood Hits	250
SwissProt Accessions	O35137	Gene names	Alx4
Domain Architecture
Description	Homeobox protein aristaless-like 4 (ALX-4).

HXA1_HUMAN
θ value	0.0563607 (rank : 69)	NC score	0.340000 (rank : 61)
Query Neighborhood Hits	276	Target Neighborhood Hits	334	Shared Neighborhood Hits	239
SwissProt Accessions	P49639, O43363	Gene names	HOXA1, HOX1F
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1F).

HXA1_MOUSE
θ value	0.0563607 (rank : 70)	NC score	0.340536 (rank : 59)
Query Neighborhood Hits	276	Target Neighborhood Hits	341	Shared Neighborhood Hits	241
SwissProt Accessions	P09022, P15463	Gene names	Hoxa1, Era-1, Hox-1.6, Hoxa-1
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399).

HXA6_MOUSE
θ value	0.0563607 (rank : 71)	NC score	0.340293 (rank : 60)
Query Neighborhood Hits	276	Target Neighborhood Hits	304	Shared Neighborhood Hits	231
SwissProt Accessions	P09092, Q9JI98	Gene names	Hoxa6, Hox-1.2, Hoxa-6
Domain Architecture
Description	Homeobox protein Hox-A6 (Hox-1.2) (M5-4).

MSX2_HUMAN
θ value	0.0563607 (rank : 72)	NC score	0.290522 (rank : 136)
Query Neighborhood Hits	276	Target Neighborhood Hits	337	Shared Neighborhood Hits	236
SwissProt Accessions	P35548	Gene names	MSX2, HOX8
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8).

MSX2_MOUSE
θ value	0.0563607 (rank : 73)	NC score	0.288518 (rank : 144)
Query Neighborhood Hits	276	Target Neighborhood Hits	345	Shared Neighborhood Hits	236
SwissProt Accessions	Q03358, Q63856	Gene names	Msx2, Hox-8.1, Msx-2
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8.1).

NKX12_MOUSE
θ value	0.0563607 (rank : 74)	NC score	0.323067 (rank : 67)
Query Neighborhood Hits	276	Target Neighborhood Hits	332	Shared Neighborhood Hits	234
SwissProt Accessions	P42580, Q9JHF2, Q9JKW5, Q9JKW6, Q9JKW9, Q9JKX0, Q9JKX1	Gene names	Nkx1-2, Nkx1.1, Sax1
Domain Architecture
Description	NK1 transcription factor-related protein 2 (Homeobox protein SAX-1) (NKX-1.1).

ZHX3_HUMAN
θ value	0.0563607 (rank : 75)	NC score	0.236264 (rank : 262)
Query Neighborhood Hits	276	Target Neighborhood Hits	331	Shared Neighborhood Hits	162
SwissProt Accessions	Q9H4I2, O43145	Gene names	ZHX3, KIAA0395, TIX1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

ZHX3_MOUSE
θ value	0.0563607 (rank : 76)	NC score	0.245227 (rank : 245)
Query Neighborhood Hits	276	Target Neighborhood Hits	321	Shared Neighborhood Hits	167
SwissProt Accessions	Q8C0Q2, Q80U14	Gene names	Zhx3, Kiaa0395, Tix1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

HXB2_MOUSE
θ value	0.0736092 (rank : 77)	NC score	0.294179 (rank : 122)
Query Neighborhood Hits	276	Target Neighborhood Hits	350	Shared Neighborhood Hits	227
SwissProt Accessions	P0C1T1	Gene names	Hoxb2, Hox-2.8
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-B2 (Hox-2.8).

HXC8_HUMAN
θ value	0.0736092 (rank : 78)	NC score	0.348325 (rank : 57)
Query Neighborhood Hits	276	Target Neighborhood Hits	327	Shared Neighborhood Hits	241
SwissProt Accessions	P31273, O15221, O15362	Gene names	HOXC8, HOX3A
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3A).

HXC8_MOUSE
θ value	0.0736092 (rank : 79)	NC score	0.348305 (rank : 58)
Query Neighborhood Hits	276	Target Neighborhood Hits	327	Shared Neighborhood Hits	241
SwissProt Accessions	P09025	Gene names	Hoxc8, Hox-3.1, Hoxc-8
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3.1) (M31).

HXB1_HUMAN
θ value	0.0961366 (rank : 80)	NC score	0.314764 (rank : 74)
Query Neighborhood Hits	276	Target Neighborhood Hits	356	Shared Neighborhood Hits	241
SwissProt Accessions	P14653	Gene names	HOXB1, HOX2I
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2I).

HXB2_HUMAN
θ value	0.0961366 (rank : 81)	NC score	0.288291 (rank : 146)
Query Neighborhood Hits	276	Target Neighborhood Hits	367	Shared Neighborhood Hits	231
SwissProt Accessions	P14652, P10913, P17485	Gene names	HOXB2, HOX2H
Domain Architecture
Description	Homeobox protein Hox-B2 (Hox-2H) (Hox-2.8) (K8).

HXB6_HUMAN
θ value	0.0961366 (rank : 82)	NC score	0.330390 (rank : 65)
Query Neighborhood Hits	276	Target Neighborhood Hits	307	Shared Neighborhood Hits	231
SwissProt Accessions	P17509, P09068, Q9HB11, Q9UGH2	Gene names	HOXB6, HOX2B
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2).

HXB6_MOUSE
θ value	0.0961366 (rank : 83)	NC score	0.329903 (rank : 66)
Query Neighborhood Hits	276	Target Neighborhood Hits	309	Shared Neighborhood Hits	231
SwissProt Accessions	P09023	Gene names	Hoxb6, Hox-2.2, Hoxb-6
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2.2) (Homeobox protein MH-22A).

PITX1_HUMAN
θ value	0.0961366 (rank : 84)	NC score	0.305454 (rank : 90)
Query Neighborhood Hits	276	Target Neighborhood Hits	353	Shared Neighborhood Hits	246
SwissProt Accessions	P78337, O14677, O60425, Q9BTI5	Gene names	PITX1, BFT, PTX1
Domain Architecture
Description	Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot).

HXA5_HUMAN
θ value	0.125558 (rank : 85)	NC score	0.302359 (rank : 98)
Query Neighborhood Hits	276	Target Neighborhood Hits	336	Shared Neighborhood Hits	232
SwissProt Accessions	P20719, O43367, Q96CY6	Gene names	HOXA5, HOX1C
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1C).

HXA5_MOUSE
θ value	0.125558 (rank : 86)	NC score	0.302128 (rank : 100)
Query Neighborhood Hits	276	Target Neighborhood Hits	338	Shared Neighborhood Hits	231
SwissProt Accessions	P09021, Q91VQ5	Gene names	Hoxa5, Hox-1.3, Hoxa-5
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1.3) (M2).

HXC6_HUMAN
θ value	0.125558 (rank : 87)	NC score	0.317723 (rank : 68)
Query Neighborhood Hits	276	Target Neighborhood Hits	306	Shared Neighborhood Hits	233
SwissProt Accessions	P09630	Gene names	HOXC6, HOX3C
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3C) (HHO.C8) (CP25).

HXC6_MOUSE
θ value	0.125558 (rank : 88)	NC score	0.317723 (rank : 69)
Query Neighborhood Hits	276	Target Neighborhood Hits	306	Shared Neighborhood Hits	233
SwissProt Accessions	P10629, Q61683	Gene names	Hoxc6, Hox-3.3, Hoxc-6
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3.3) (Hox-6.1).

MSX1_HUMAN
θ value	0.125558 (rank : 89)	NC score	0.288754 (rank : 142)
Query Neighborhood Hits	276	Target Neighborhood Hits	374	Shared Neighborhood Hits	237
SwissProt Accessions	P28360, Q96NY4	Gene names	MSX1, HOX7
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7).

MSX1_MOUSE
θ value	0.125558 (rank : 90)	NC score	0.289230 (rank : 141)
Query Neighborhood Hits	276	Target Neighborhood Hits	322	Shared Neighborhood Hits	236
SwissProt Accessions	P13297	Gene names	Msx1, Hox7, Hox7.1
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7) (Hox- 7.1).

HXC9_HUMAN
θ value	0.163984 (rank : 91)	NC score	0.304023 (rank : 94)
Query Neighborhood Hits	276	Target Neighborhood Hits	339	Shared Neighborhood Hits	239
SwissProt Accessions	P31274, Q9H1I0	Gene names	HOXC9, HOX3B
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3B).

HXC9_MOUSE
θ value	0.163984 (rank : 92)	NC score	0.304112 (rank : 93)
Query Neighborhood Hits	276	Target Neighborhood Hits	338	Shared Neighborhood Hits	239
SwissProt Accessions	P09633	Gene names	Hoxc9, Hox-3.2, Hoxc-9
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3.2).

ALX3_HUMAN
θ value	0.21417 (rank : 93)	NC score	0.289256 (rank : 140)
Query Neighborhood Hits	276	Target Neighborhood Hits	380	Shared Neighborhood Hits	247
SwissProt Accessions	O95076, O95075	Gene names	ALX3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

ALX3_MOUSE
θ value	0.21417 (rank : 94)	NC score	0.289373 (rank : 138)
Query Neighborhood Hits	276	Target Neighborhood Hits	386	Shared Neighborhood Hits	246
SwissProt Accessions	O70137	Gene names	Alx3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

CART1_HUMAN
θ value	0.21417 (rank : 95)	NC score	0.267520 (rank : 201)
Query Neighborhood Hits	276	Target Neighborhood Hits	348	Shared Neighborhood Hits	241
SwissProt Accessions	Q15699, Q546C8, Q96FH4	Gene names	CART1
Domain Architecture
Description	Cartilage homeoprotein 1 (CART-1).

CART1_MOUSE
θ value	0.21417 (rank : 96)	NC score	0.266778 (rank : 204)
Query Neighborhood Hits	276	Target Neighborhood Hits	344	Shared Neighborhood Hits	238
SwissProt Accessions	Q8C8B0, Q8C370	Gene names	Cart1
Domain Architecture	No domain graphic available
Description	Cartilage homeoprotein 1 (CART-1).

ADNP_MOUSE
θ value	0.279714 (rank : 97)	NC score	0.060700 (rank : 357)
Query Neighborhood Hits	276	Target Neighborhood Hits	232	Shared Neighborhood Hits	26
SwissProt Accessions	Q9Z103	Gene names	Adnp
Domain Architecture
Description	Activity-dependent neuroprotector (Activity-dependent neuroprotective protein).

DLX5_HUMAN
θ value	0.279714 (rank : 98)	NC score	0.304410 (rank : 91)
Query Neighborhood Hits	276	Target Neighborhood Hits	405	Shared Neighborhood Hits	247
SwissProt Accessions	P56178, Q9UPL1	Gene names	DLX5
Domain Architecture
Description	Homeobox protein DLX-5.

DLX5_MOUSE
θ value	0.279714 (rank : 99)	NC score	0.317391 (rank : 70)
Query Neighborhood Hits	276	Target Neighborhood Hits	434	Shared Neighborhood Hits	247
SwissProt Accessions	P70396, O54876, O54877, O54878, Q9JJ45	Gene names	Dlx5
Domain Architecture
Description	Homeobox protein DLX-5.

HXA9_HUMAN
θ value	0.279714 (rank : 100)	NC score	0.302834 (rank : 97)
Query Neighborhood Hits	276	Target Neighborhood Hits	332	Shared Neighborhood Hits	241
SwissProt Accessions	P31269, O43369, O43429, Q99820	Gene names	HOXA9, HOX1G
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1G).

HXA9_MOUSE
θ value	0.279714 (rank : 101)	NC score	0.303119 (rank : 96)
Query Neighborhood Hits	276	Target Neighborhood Hits	334	Shared Neighborhood Hits	241
SwissProt Accessions	P09631, O70154, O70155	Gene names	Hoxa9, Hox-1.7, Hoxa-9
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1.7).

HXD9_HUMAN
θ value	0.279714 (rank : 102)	NC score	0.297945 (rank : 109)
Query Neighborhood Hits	276	Target Neighborhood Hits	352	Shared Neighborhood Hits	239
SwissProt Accessions	P28356	Gene names	HOXD9, HOX4C
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2).

HXD9_MOUSE
θ value	0.279714 (rank : 103)	NC score	0.296200 (rank : 114)
Query Neighborhood Hits	276	Target Neighborhood Hits	359	Shared Neighborhood Hits	239
SwissProt Accessions	P28357, Q3UYS2	Gene names	Hoxd9, Hox-4.4, Hoxd-9
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4.4) (Hox-5.2).

IPF1_MOUSE
θ value	0.279714 (rank : 104)	NC score	0.308105 (rank : 86)
Query Neighborhood Hits	276	Target Neighborhood Hits	340	Shared Neighborhood Hits	237
SwissProt Accessions	P52946	Gene names	Ipf1, Pdx1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Islet/duodenum homeobox 1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Pancreas/duodenum homeobox 1).

NKX22_HUMAN
θ value	0.279714 (rank : 105)	NC score	0.279610 (rank : 173)
Query Neighborhood Hits	276	Target Neighborhood Hits	342	Shared Neighborhood Hits	239
SwissProt Accessions	O95096	Gene names	NKX2-2, NKX2.2, NKX2B
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

NKX22_MOUSE
θ value	0.279714 (rank : 106)	NC score	0.280722 (rank : 170)
Query Neighborhood Hits	276	Target Neighborhood Hits	336	Shared Neighborhood Hits	243
SwissProt Accessions	P42586	Gene names	Nkx2-2, Nkx-2.2, Nkx2b
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

NKX25_HUMAN
θ value	0.279714 (rank : 107)	NC score	0.292545 (rank : 129)
Query Neighborhood Hits	276	Target Neighborhood Hits	338	Shared Neighborhood Hits	246
SwissProt Accessions	P52952	Gene names	NKX2-5, CSX, NKX2.5, NKX2E
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

NKX25_MOUSE
θ value	0.279714 (rank : 108)	NC score	0.289941 (rank : 137)
Query Neighborhood Hits	276	Target Neighborhood Hits	347	Shared Neighborhood Hits	243
SwissProt Accessions	P42582, P97335	Gene names	Nkx2-5, Csx, Nkx-2.5, Nkx2e
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

PITX1_MOUSE
θ value	0.279714 (rank : 109)	NC score	0.306037 (rank : 88)
Query Neighborhood Hits	276	Target Neighborhood Hits	362	Shared Neighborhood Hits	250
SwissProt Accessions	P70314, O54742, P70427	Gene names	Pitx1, Bft, Potx, Ptx1
Domain Architecture
Description	Pituitary homeobox 1 (Homeobox protein P-OTX) (Pituitary OTX-related factor) (Hindlimb expressed homeobox protein backfoot) (Ptx1).

PITX2_HUMAN
θ value	0.279714 (rank : 110)	NC score	0.315358 (rank : 73)
Query Neighborhood Hits	276	Target Neighborhood Hits	381	Shared Neighborhood Hits	252
SwissProt Accessions	Q99697, O60578, O60579, O60580, Q9BY17	Gene names	PITX2, ARP1, RGS, RIEG, RIEG1
Domain Architecture
Description	Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription factor) (Solurshin) (ALL1-responsive protein ARP1).

PITX2_MOUSE
θ value	0.279714 (rank : 111)	NC score	0.314721 (rank : 75)
Query Neighborhood Hits	276	Target Neighborhood Hits	383	Shared Neighborhood Hits	252
SwissProt Accessions	P97474, O08646, O70336, P97933, Q9JLA0, Q9QXB8, Q9R1V9, Q9Z141	Gene names	Pitx2, Arp1, Brx1, Otlx2, Ptx2, Rgs
Domain Architecture
Description	Pituitary homeobox 2 (Orthodenticle-like homeobox 2) (Solurshin) (ALL1-responsive protein ARP1) (BRX1 homeoprotein) (Paired-like homeodomain transcription factor Munc 30).

HXB1_MOUSE
θ value	0.365318 (rank : 112)	NC score	0.314301 (rank : 76)
Query Neighborhood Hits	276	Target Neighborhood Hits	341	Shared Neighborhood Hits	241
SwissProt Accessions	P17919, Q3ZAY6, Q9CYH3	Gene names	Hoxb1, Hox-2.9, Hoxb-1
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2.9).

HXB5_HUMAN
θ value	0.365318 (rank : 113)	NC score	0.298061 (rank : 106)
Query Neighborhood Hits	276	Target Neighborhood Hits	332	Shared Neighborhood Hits	231
SwissProt Accessions	P09067, P09069	Gene names	HOXB5, HOX2A
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2A) (HHO.C10) (HU-1).

HXB5_MOUSE
θ value	0.365318 (rank : 114)	NC score	0.297747 (rank : 110)
Query Neighborhood Hits	276	Target Neighborhood Hits	337	Shared Neighborhood Hits	232
SwissProt Accessions	P09079, Q3ZAY8	Gene names	Hoxb5, Hox-2.1, Hoxb-5
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2.1) (MU-1) (H24.1).

LHX4_HUMAN
θ value	0.365318 (rank : 115)	NC score	0.180944 (rank : 289)
Query Neighborhood Hits	276	Target Neighborhood Hits	455	Shared Neighborhood Hits	243
SwissProt Accessions	Q969G2, Q8NHE0, Q8TCJ1, Q8WWX2, Q969W2	Gene names	LHX4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

PGCA_MOUSE
θ value	0.365318 (rank : 116)	NC score	0.010384 (rank : 367)
Query Neighborhood Hits	276	Target Neighborhood Hits	643	Shared Neighborhood Hits	13
SwissProt Accessions	Q61282, Q64021	Gene names	Agc1, Agc
Domain Architecture
Description	Aggrecan core protein precursor (Cartilage-specific proteoglycan core protein) (CSPCP).

HXD1_MOUSE
θ value	0.47712 (rank : 117)	NC score	0.316399 (rank : 71)
Query Neighborhood Hits	276	Target Neighborhood Hits	381	Shared Neighborhood Hits	239
SwissProt Accessions	Q01822	Gene names	Hoxd1, Hox-4.9, Hoxd-1
Domain Architecture
Description	Homeobox protein Hox-D1 (Hox-4.9).

LHX4_MOUSE
θ value	0.47712 (rank : 118)	NC score	0.181306 (rank : 288)
Query Neighborhood Hits	276	Target Neighborhood Hits	457	Shared Neighborhood Hits	243
SwissProt Accessions	P53776, O08916, Q9R280	Gene names	Lhx4, Gsh-4, Gsh4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

MEOX1_HUMAN
θ value	0.47712 (rank : 119)	NC score	0.268088 (rank : 198)
Query Neighborhood Hits	276	Target Neighborhood Hits	342	Shared Neighborhood Hits	235
SwissProt Accessions	P50221	Gene names	MEOX1, MOX1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

MSX3_MOUSE
θ value	0.47712 (rank : 120)	NC score	0.275490 (rank : 180)
Query Neighborhood Hits	276	Target Neighborhood Hits	330	Shared Neighborhood Hits	231
SwissProt Accessions	P70354, P70246, Q03360, Q80W10	Gene names	Msx3, Msx-3
Domain Architecture
Description	Homeobox protein MSX-3.

OTP_MOUSE
θ value	0.47712 (rank : 121)	NC score	0.283603 (rank : 161)
Query Neighborhood Hits	276	Target Neighborhood Hits	387	Shared Neighborhood Hits	242
SwissProt Accessions	O09113	Gene names	Otp
Domain Architecture
Description	Homeobox protein orthopedia.

PO6F1_HUMAN
θ value	0.47712 (rank : 122)	NC score	0.190012 (rank : 286)
Query Neighborhood Hits	276	Target Neighborhood Hits	370	Shared Neighborhood Hits	231
SwissProt Accessions	Q14863	Gene names	POU6F1, BRN5, MPOU, TCFB1
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (mPOU homeobox protein) (Brain-specific homeobox/POU domain protein 5) (Brain-5) (Brn-5 protein).

PO6F1_MOUSE
θ value	0.47712 (rank : 123)	NC score	0.182605 (rank : 287)
Query Neighborhood Hits	276	Target Neighborhood Hits	581	Shared Neighborhood Hits	232
SwissProt Accessions	Q07916, Q91XK3	Gene names	Pou6f1, Emb
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (Octamer-binding transcription factor EMB) (Transcription regulatory protein MCP-1).

DLX2_HUMAN
θ value	0.62314 (rank : 124)	NC score	0.301482 (rank : 101)
Query Neighborhood Hits	276	Target Neighborhood Hits	355	Shared Neighborhood Hits	245
SwissProt Accessions	Q07687	Gene names	DLX2
Domain Architecture
Description	Homeobox protein DLX-2.

DLX2_MOUSE
θ value	0.62314 (rank : 125)	NC score	0.300948 (rank : 102)
Query Neighborhood Hits	276	Target Neighborhood Hits	352	Shared Neighborhood Hits	245
SwissProt Accessions	P40764	Gene names	Dlx2, Tes-1, Tes1
Domain Architecture
Description	Homeobox protein DLX-2 (Homeobox protein TES-1).

DLX3_MOUSE
θ value	0.62314 (rank : 126)	NC score	0.298635 (rank : 105)
Query Neighborhood Hits	276	Target Neighborhood Hits	367	Shared Neighborhood Hits	246
SwissProt Accessions	Q64205	Gene names	Dlx3
Domain Architecture
Description	Homeobox protein DLX-3.

HXA4_HUMAN
θ value	0.62314 (rank : 127)	NC score	0.300894 (rank : 103)
Query Neighborhood Hits	276	Target Neighborhood Hits	370	Shared Neighborhood Hits	236
SwissProt Accessions	Q00056, O43366	Gene names	HOXA4, HOX1D
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4).

HXA4_MOUSE
θ value	0.62314 (rank : 128)	NC score	0.305713 (rank : 89)
Query Neighborhood Hits	276	Target Neighborhood Hits	379	Shared Neighborhood Hits	237
SwissProt Accessions	P06798, Q61684, Q64388, Q8BPE6	Gene names	Hoxa4, Hox-1.4, Hoxa-4
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1.4) (Homeobox protein MH-3).

EVX2_HUMAN
θ value	0.813845 (rank : 129)	NC score	0.256478 (rank : 228)
Query Neighborhood Hits	276	Target Neighborhood Hits	325	Shared Neighborhood Hits	226
SwissProt Accessions	Q03828	Gene names	EVX2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

HLXB9_HUMAN
θ value	0.813845 (rank : 130)	NC score	0.310079 (rank : 83)
Query Neighborhood Hits	276	Target Neighborhood Hits	336	Shared Neighborhood Hits	239
SwissProt Accessions	P50219, Q9Y648	Gene names	HLXB9
Domain Architecture
Description	Homeobox protein HB9.

HLXB9_MOUSE
θ value	0.813845 (rank : 131)	NC score	0.303239 (rank : 95)
Query Neighborhood Hits	276	Target Neighborhood Hits	354	Shared Neighborhood Hits	240
SwissProt Accessions	Q9QZW9	Gene names	Hlxb9
Domain Architecture
Description	Homeobox protein HB9.

HXA13_HUMAN
θ value	0.813845 (rank : 132)	NC score	0.286420 (rank : 152)
Query Neighborhood Hits	276	Target Neighborhood Hits	353	Shared Neighborhood Hits	248
SwissProt Accessions	P31271, O43371	Gene names	HOXA13, HOX1J
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1J).

HXA13_MOUSE
θ value	0.813845 (rank : 133)	NC score	0.287982 (rank : 148)
Query Neighborhood Hits	276	Target Neighborhood Hits	351	Shared Neighborhood Hits	248
SwissProt Accessions	Q62424	Gene names	Hoxa13, Hox-1.10
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1.10).

HXA3_HUMAN
θ value	0.813845 (rank : 134)	NC score	0.294045 (rank : 123)
Query Neighborhood Hits	276	Target Neighborhood Hits	535	Shared Neighborhood Hits	240
SwissProt Accessions	O43365	Gene names	HOXA3, HOX1E
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1E).

HXA3_MOUSE
θ value	0.813845 (rank : 135)	NC score	0.292800 (rank : 128)
Query Neighborhood Hits	276	Target Neighborhood Hits	558	Shared Neighborhood Hits	241
SwissProt Accessions	P02831, Q4V9Z8, Q61197	Gene names	Hoxa3, Hox-1.5, Hoxa-3
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1.5) (MO-10).

HXD11_MOUSE
θ value	0.813845 (rank : 136)	NC score	0.284516 (rank : 157)
Query Neighborhood Hits	276	Target Neighborhood Hits	376	Shared Neighborhood Hits	242
SwissProt Accessions	P23813	Gene names	Hoxd11, Hox-4.6, Hoxd-11
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5).

HXD1_HUMAN
θ value	0.813845 (rank : 137)	NC score	0.316305 (rank : 72)
Query Neighborhood Hits	276	Target Neighborhood Hits	337	Shared Neighborhood Hits	237
SwissProt Accessions	Q9GZZ0	Gene names	HOXD1
Domain Architecture
Description	Homeobox protein Hox-D1.

IPF1_HUMAN
θ value	0.813845 (rank : 138)	NC score	0.304130 (rank : 92)
Query Neighborhood Hits	276	Target Neighborhood Hits	330	Shared Neighborhood Hits	235
SwissProt Accessions	P52945, O60594	Gene names	IPF1, PDX1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Pancreas/duodenum homeobox 1) (PDX- 1) (Islet/duodenum homeobox-1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Insulin upstream factor 1) (IUF-1) (Glucose- sensitive factor) (GSF).

PAX7_HUMAN
θ value	0.813845 (rank : 139)	NC score	0.243473 (rank : 251)
Query Neighborhood Hits	276	Target Neighborhood Hits	456	Shared Neighborhood Hits	252
SwissProt Accessions	P23759	Gene names	PAX7, HUP1
Domain Architecture
Description	Paired box protein Pax-7 (HUP1).

PAX7_MOUSE
θ value	0.813845 (rank : 140)	NC score	0.241718 (rank : 255)
Query Neighborhood Hits	276	Target Neighborhood Hits	422	Shared Neighborhood Hits	252
SwissProt Accessions	P47239, Q9ES16	Gene names	Pax7, Pax-7
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-7.

SAPS1_HUMAN
θ value	0.813845 (rank : 141)	NC score	0.027027 (rank : 361)
Query Neighborhood Hits	276	Target Neighborhood Hits	704	Shared Neighborhood Hits	20
SwissProt Accessions	Q9UPN7, Q504V2, Q6NVJ6, Q9BU97	Gene names	SAPS1, KIAA1115
Domain Architecture
Description	SAPS domain family member 1.

ATBF1_HUMAN
θ value	1.06291 (rank : 142)	NC score	0.139266 (rank : 305)
Query Neighborhood Hits	276	Target Neighborhood Hits	1547	Shared Neighborhood Hits	253
SwissProt Accessions	Q15911, O15101, Q13719	Gene names	ATBF1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

ATBF1_MOUSE
θ value	1.06291 (rank : 143)	NC score	0.137355 (rank : 310)
Query Neighborhood Hits	276	Target Neighborhood Hits	1841	Shared Neighborhood Hits	253
SwissProt Accessions	Q61329	Gene names	Atbf1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

EMX2_HUMAN
θ value	1.06291 (rank : 144)	NC score	0.310991 (rank : 80)
Query Neighborhood Hits	276	Target Neighborhood Hits	341	Shared Neighborhood Hits	248
SwissProt Accessions	Q04743, Q96NN8, Q9BQF4	Gene names	EMX2
Domain Architecture
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

EMX2_MOUSE
θ value	1.06291 (rank : 145)	NC score	0.311841 (rank : 79)
Query Neighborhood Hits	276	Target Neighborhood Hits	340	Shared Neighborhood Hits	248
SwissProt Accessions	Q04744, Q80UE7	Gene names	Emx2, Emx-2
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

HMX2_MOUSE
θ value	1.06291 (rank : 146)	NC score	0.297964 (rank : 108)
Query Neighborhood Hits	276	Target Neighborhood Hits	354	Shared Neighborhood Hits	243
SwissProt Accessions	P43687, Q8R1Q2	Gene names	Hmx2, Nkx-5.2, Nkx5-2
Domain Architecture
Description	Homeobox protein HMX2 (Homeobox protein Nkx-5.2).

HXA2_HUMAN
θ value	1.06291 (rank : 147)	NC score	0.283081 (rank : 162)
Query Neighborhood Hits	276	Target Neighborhood Hits	370	Shared Neighborhood Hits	229
SwissProt Accessions	O43364	Gene names	HOXA2
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A2.

HXA2_MOUSE
θ value	1.06291 (rank : 148)	NC score	0.283889 (rank : 159)
Query Neighborhood Hits	276	Target Neighborhood Hits	338	Shared Neighborhood Hits	229
SwissProt Accessions	P31245, Q149U3, Q920T8	Gene names	Hoxa2, Hox-1.11, Hoxa-2
Domain Architecture
Description	Homeobox protein Hox-A2 (Hox-1.11) (Hox1.11).

HXB3_HUMAN
θ value	1.06291 (rank : 149)	NC score	0.282544 (rank : 165)
Query Neighborhood Hits	276	Target Neighborhood Hits	559	Shared Neighborhood Hits	235
SwissProt Accessions	P14651, O95615, P17484	Gene names	HOXB3, HOX2G
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7).

HXB3_MOUSE
θ value	1.06291 (rank : 150)	NC score	0.283815 (rank : 160)
Query Neighborhood Hits	276	Target Neighborhood Hits	493	Shared Neighborhood Hits	233
SwissProt Accessions	P09026, P10285, Q4PJ06, Q61680	Gene names	Hoxb3, Hox-2.7, Hoxb-3
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2.7) (Homeobox protein MH-23).

HXB4_HUMAN
θ value	1.06291 (rank : 151)	NC score	0.296884 (rank : 113)
Query Neighborhood Hits	276	Target Neighborhood Hits	376	Shared Neighborhood Hits	235
SwissProt Accessions	P17483, Q9NTA0	Gene names	HOXB4, HOX2F
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2F) (Hox-2.6).

HXB4_MOUSE
θ value	1.06291 (rank : 152)	NC score	0.295082 (rank : 118)
Query Neighborhood Hits	276	Target Neighborhood Hits	375	Shared Neighborhood Hits	235
SwissProt Accessions	P10284, Q3UZB4, Q4VBG0	Gene names	Hoxb4, Hox-2.6, Hoxb-4
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2.6).

HXC5_HUMAN
θ value	1.06291 (rank : 153)	NC score	0.295818 (rank : 116)
Query Neighborhood Hits	276	Target Neighborhood Hits	316	Shared Neighborhood Hits	227
SwissProt Accessions	Q00444	Gene names	HOXC5, HOX3D
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3D) (CP11).

HXC5_MOUSE
θ value	1.06291 (rank : 154)	NC score	0.295343 (rank : 117)
Query Neighborhood Hits	276	Target Neighborhood Hits	316	Shared Neighborhood Hits	227
SwissProt Accessions	P32043, Q8BJW4	Gene names	Hoxc5, Hox-3.4, Hoxc-5
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3.4) (Hox-6.2).

HXD3_HUMAN
θ value	1.06291 (rank : 155)	NC score	0.291300 (rank : 132)
Query Neighborhood Hits	276	Target Neighborhood Hits	433	Shared Neighborhood Hits	239
SwissProt Accessions	P31249, Q99955, Q9BSC5	Gene names	HOXD3, HOX4A
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4A).

HXD3_MOUSE
θ value	1.06291 (rank : 156)	NC score	0.291049 (rank : 134)
Query Neighborhood Hits	276	Target Neighborhood Hits	435	Shared Neighborhood Hits	240
SwissProt Accessions	P09027, Q3UUD3	Gene names	Hoxd3, Hox-4.1, Hoxd-3
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4.1) (Homeobox protein MH-19).

HXD4_HUMAN
θ value	1.06291 (rank : 157)	NC score	0.298832 (rank : 104)
Query Neighborhood Hits	276	Target Neighborhood Hits	337	Shared Neighborhood Hits	229
SwissProt Accessions	P09016, Q96AU0	Gene names	HOXD4, HOX4B
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4B) (Hox-5.1) (HHO.C13).

HXD4_MOUSE
θ value	1.06291 (rank : 158)	NC score	0.296919 (rank : 112)
Query Neighborhood Hits	276	Target Neighborhood Hits	339	Shared Neighborhood Hits	227
SwissProt Accessions	P10628, P97451, Q3UXL6	Gene names	Hoxd4, Hox-4.2, Hoxd-4
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4.2) (Hox-5.1).

NKX26_MOUSE
θ value	1.06291 (rank : 159)	NC score	0.282049 (rank : 168)
Query Neighborhood Hits	276	Target Neighborhood Hits	343	Shared Neighborhood Hits	235
SwissProt Accessions	P43688	Gene names	Nkx2-6, Nkx-2.6, Nkx2f
Domain Architecture
Description	Homeobox protein Nkx-2.6 (Homeobox protein NK-2 homolog F).

NKX28_HUMAN
θ value	1.06291 (rank : 160)	NC score	0.298056 (rank : 107)
Query Neighborhood Hits	276	Target Neighborhood Hits	352	Shared Neighborhood Hits	251
SwissProt Accessions	O15522	Gene names	NKX2-8, NKX-2.8, NKX2G, NKX2H
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H).

NKX28_MOUSE
θ value	1.06291 (rank : 161)	NC score	0.296952 (rank : 111)
Query Neighborhood Hits	276	Target Neighborhood Hits	347	Shared Neighborhood Hits	249
SwissProt Accessions	O70584	Gene names	Nkx2-8, Nkx-2.9, Nkx2-9, Nkx2h
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H) (Homeobox protein Nkx-2.9).

PO2F2_HUMAN
θ value	1.06291 (rank : 162)	NC score	0.142414 (rank : 302)
Query Neighborhood Hits	276	Target Neighborhood Hits	379	Shared Neighborhood Hits	220
SwissProt Accessions	P09086, Q16648, Q9BRS4	Gene names	POU2F2, OCT2, OTF2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

PO2F2_MOUSE
θ value	1.06291 (rank : 163)	NC score	0.142547 (rank : 301)
Query Neighborhood Hits	276	Target Neighborhood Hits	353	Shared Neighborhood Hits	218
SwissProt Accessions	Q00196, Q00197, Q00198, Q00199, Q00200, Q00201, Q05882, Q61995, Q61996, Q64245	Gene names	Pou2f2, Oct2, Otf2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

PRRX2_MOUSE
θ value	1.06291 (rank : 164)	NC score	0.240063 (rank : 256)
Query Neighborhood Hits	276	Target Neighborhood Hits	351	Shared Neighborhood Hits	237
SwissProt Accessions	Q06348, Q61651	Gene names	Prrx2, Prx2, S8
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Homeobox protein S8).

TITF1_HUMAN
θ value	1.06291 (rank : 165)	NC score	0.294967 (rank : 120)
Query Neighborhood Hits	276	Target Neighborhood Hits	332	Shared Neighborhood Hits	235
SwissProt Accessions	P43699, O14954, O14955, Q9BRJ8	Gene names	TITF1, NKX2-1, NKX2A, TTF1
Domain Architecture
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1) (Homeobox protein NK-2 homolog A).

TITF1_MOUSE
θ value	1.06291 (rank : 166)	NC score	0.293577 (rank : 125)
Query Neighborhood Hits	276	Target Neighborhood Hits	335	Shared Neighborhood Hits	235
SwissProt Accessions	P50220	Gene names	Titf1, Nkx-2.1, Nkx2-1, Ttf1
Domain Architecture	No domain graphic available
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1).

TLX1_MOUSE
θ value	1.06291 (rank : 167)	NC score	0.288060 (rank : 147)
Query Neighborhood Hits	276	Target Neighborhood Hits	347	Shared Neighborhood Hits	237
SwissProt Accessions	P43345	Gene names	Tlx1, Hox11, Tlx-1
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (Homeobox TLX-1).

APXL_HUMAN
θ value	1.38821 (rank : 168)	NC score	0.017615 (rank : 362)
Query Neighborhood Hits	276	Target Neighborhood Hits	553	Shared Neighborhood Hits	10
SwissProt Accessions	Q13796	Gene names	APXL
Domain Architecture
Description	Apical-like protein (Protein APXL).

DLX1_HUMAN
θ value	1.38821 (rank : 169)	NC score	0.310806 (rank : 81)
Query Neighborhood Hits	276	Target Neighborhood Hits	343	Shared Neighborhood Hits	247
SwissProt Accessions	P56177, Q53ZU4, Q8IYB2	Gene names	DLX1
Domain Architecture
Description	Homeobox protein DLX-1.

DLX1_MOUSE
θ value	1.38821 (rank : 170)	NC score	0.310751 (rank : 82)
Query Neighborhood Hits	276	Target Neighborhood Hits	343	Shared Neighborhood Hits	247
SwissProt Accessions	Q64317	Gene names	Dlx1
Domain Architecture
Description	Homeobox protein DLX-1.

DLX3_HUMAN
θ value	1.38821 (rank : 171)	NC score	0.302198 (rank : 99)
Query Neighborhood Hits	276	Target Neighborhood Hits	369	Shared Neighborhood Hits	246
SwissProt Accessions	O60479	Gene names	DLX3
Domain Architecture
Description	Homeobox protein DLX-3.

PO2F3_HUMAN
θ value	1.38821 (rank : 172)	NC score	0.137388 (rank : 309)
Query Neighborhood Hits	276	Target Neighborhood Hits	319	Shared Neighborhood Hits	218
SwissProt Accessions	Q9UKI9, Q9UKR7, Q9Y504	Gene names	POU2F3, OTF11, PLA1
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Transcription factor Skn-1) (PLA-1 protein).

PO2F3_MOUSE
θ value	1.38821 (rank : 173)	NC score	0.140318 (rank : 303)
Query Neighborhood Hits	276	Target Neighborhood Hits	328	Shared Neighborhood Hits	220
SwissProt Accessions	P31362	Gene names	Pou2f3, Epoc1, Oct11, Otf-11, Otf11
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Epoc-1).

DLX6_HUMAN
θ value	1.81305 (rank : 174)	NC score	0.306582 (rank : 87)
Query Neighborhood Hits	276	Target Neighborhood Hits	341	Shared Neighborhood Hits	250
SwissProt Accessions	P56179, Q3ZAR6, Q9UPL2	Gene names	DLX6
Domain Architecture
Description	Homeobox protein DLX-6.

GSHI_HUMAN
θ value	1.81305 (rank : 175)	NC score	0.291250 (rank : 133)
Query Neighborhood Hits	276	Target Neighborhood Hits	314	Shared Neighborhood Hits	233
SwissProt Accessions	Q9H4S2	Gene names	GSH1
Domain Architecture
Description	Homeobox protein GSH-1.

GSHI_MOUSE
θ value	1.81305 (rank : 176)	NC score	0.293559 (rank : 126)
Query Neighborhood Hits	276	Target Neighborhood Hits	313	Shared Neighborhood Hits	231
SwissProt Accessions	P31315	Gene names	Gsh1, Gsh-1
Domain Architecture
Description	Homeobox protein GSH-1.

HLX1_HUMAN
θ value	1.81305 (rank : 177)	NC score	0.292053 (rank : 130)
Query Neighborhood Hits	276	Target Neighborhood Hits	370	Shared Neighborhood Hits	244
SwissProt Accessions	Q14774, Q15988	Gene names	HLX1
Domain Architecture
Description	Homeobox protein HLX1 (Homeobox protein HB24).

HXC10_HUMAN
θ value	1.81305 (rank : 178)	NC score	0.293376 (rank : 127)
Query Neighborhood Hits	276	Target Neighborhood Hits	417	Shared Neighborhood Hits	246
SwissProt Accessions	Q9NYD6, O15219, O15220, Q9BVD5	Gene names	HOXC10
Domain Architecture
Description	Homeobox protein Hox-C10.

HXC10_MOUSE
θ value	1.81305 (rank : 179)	NC score	0.294921 (rank : 121)
Query Neighborhood Hits	276	Target Neighborhood Hits	417	Shared Neighborhood Hits	246
SwissProt Accessions	P31257, P31312, Q7TMT7	Gene names	Hoxc10, Hox-3.6, Hoxc-10
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C10 (Hox-3.6).

HXC4_MOUSE
θ value	1.81305 (rank : 180)	NC score	0.291837 (rank : 131)
Query Neighborhood Hits	276	Target Neighborhood Hits	365	Shared Neighborhood Hits	237
SwissProt Accessions	Q08624	Gene names	Hoxc4, Hox-3.5, Hoxc-4
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3.5).

NKX23_MOUSE
θ value	1.81305 (rank : 181)	NC score	0.269207 (rank : 195)
Query Neighborhood Hits	276	Target Neighborhood Hits	340	Shared Neighborhood Hits	242
SwissProt Accessions	P97334, Q9QZ60, Q9WV67	Gene names	Nkx2-3, Nkx-2.3, Nkx2c
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NK-2 homolog C) (Nkx2-C) (Homeobox protein NK-2 homolog 3).

OXRP_HUMAN
θ value	1.81305 (rank : 182)	NC score	0.008474 (rank : 368)
Query Neighborhood Hits	276	Target Neighborhood Hits	544	Shared Neighborhood Hits	14
SwissProt Accessions	Q9Y4L1	Gene names	HYOU1, ORP150
Domain Architecture
Description	150 kDa oxygen-regulated protein precursor (Orp150) (Hypoxia up- regulated 1).

PAX6_HUMAN
θ value	1.81305 (rank : 183)	NC score	0.216116 (rank : 282)
Query Neighborhood Hits	276	Target Neighborhood Hits	383	Shared Neighborhood Hits	236
SwissProt Accessions	P26367, Q6N006, Q99413	Gene names	PAX6, AN2
Domain Architecture
Description	Paired box protein Pax-6 (Oculorhombin) (Aniridia type II protein).

PAX6_MOUSE
θ value	1.81305 (rank : 184)	NC score	0.216116 (rank : 283)
Query Neighborhood Hits	276	Target Neighborhood Hits	383	Shared Neighborhood Hits	236
SwissProt Accessions	P63015, P32117, P70601, Q62222, Q64037, Q8CEI5, Q8VDB5, Q921Q8	Gene names	Pax6, Pax-6, Sey
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-6 (Oculorhombin).

PHX2A_HUMAN
θ value	1.81305 (rank : 185)	NC score	0.262518 (rank : 213)
Query Neighborhood Hits	276	Target Neighborhood Hits	345	Shared Neighborhood Hits	232
SwissProt Accessions	O14813, Q8IVZ2	Gene names	PHOX2A, ARIX, PMX2A
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (Aristaless homeobox protein homolog) (ARIX1 homeodomain protein).

PHX2A_MOUSE
θ value	1.81305 (rank : 186)	NC score	0.261800 (rank : 215)
Query Neighborhood Hits	276	Target Neighborhood Hits	338	Shared Neighborhood Hits	232
SwissProt Accessions	Q62066	Gene names	Phox2a, Arix, Phox2, Pmx2, Pmx2a
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (PHOX2A homeodomain protein) (Aristaless homeobox protein homolog).

PRRXL_MOUSE
θ value	1.81305 (rank : 187)	NC score	0.258017 (rank : 225)
Query Neighborhood Hits	276	Target Neighborhood Hits	350	Shared Neighborhood Hits	248
SwissProt Accessions	Q8BYH0, Q8K3F8	Gene names	Prrxl1, Drg11
Domain Architecture	No domain graphic available
Description	Paired-related homeobox protein-like 1 (Dorsal root ganglion 11) (Homeobox protein DRG11).

VSX1_HUMAN
θ value	1.81305 (rank : 188)	NC score	0.228724 (rank : 274)
Query Neighborhood Hits	276	Target Neighborhood Hits	344	Shared Neighborhood Hits	226
SwissProt Accessions	Q9NZR4, Q5TF40, Q5TF41, Q9HCU3, Q9NU27	Gene names	VSX1, RINX
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

ZHX1_HUMAN
θ value	1.81305 (rank : 189)	NC score	0.179181 (rank : 291)
Query Neighborhood Hits	276	Target Neighborhood Hits	307	Shared Neighborhood Hits	156
SwissProt Accessions	Q9UKY1, Q8IWD8	Gene names	ZHX1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

ZHX1_MOUSE
θ value	1.81305 (rank : 190)	NC score	0.180171 (rank : 290)
Query Neighborhood Hits	276	Target Neighborhood Hits	334	Shared Neighborhood Hits	162
SwissProt Accessions	P70121, Q8BQ68, Q8C6T4, Q8CJG3	Gene names	Zhx1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

ZSCA1_HUMAN
θ value	1.81305 (rank : 191)	NC score	-0.003792 (rank : 372)
Query Neighborhood Hits	276	Target Neighborhood Hits	724	Shared Neighborhood Hits	5
SwissProt Accessions	Q8NBB4, Q6WLH8, Q86WS8	Gene names	ZSCAN1
Domain Architecture	No domain graphic available
Description	Zinc finger and SCAN domain-containing protein 1.

DLX4_HUMAN
θ value	2.36792 (rank : 192)	NC score	0.273654 (rank : 182)
Query Neighborhood Hits	276	Target Neighborhood Hits	350	Shared Neighborhood Hits	243
SwissProt Accessions	Q92988, O60480, Q13265, Q6PJK0, Q9HBE0	Gene names	DLX4, BP1, DLX7, DLX8
Domain Architecture	No domain graphic available
Description	Homeobox protein DLX-4 (DLX-7) (DLX-8) (Beta protein 1).

HXA10_HUMAN
θ value	2.36792 (rank : 193)	NC score	0.293908 (rank : 124)
Query Neighborhood Hits	276	Target Neighborhood Hits	334	Shared Neighborhood Hits	239
SwissProt Accessions	P31260, O43370, O43605, Q15949	Gene names	HOXA10, HOX1H
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL).

HXA10_MOUSE
θ value	2.36792 (rank : 194)	NC score	0.290872 (rank : 135)
Query Neighborhood Hits	276	Target Neighborhood Hits	365	Shared Neighborhood Hits	239
SwissProt Accessions	P31310, Q80Y22	Gene names	Hoxa10, Hox-1.8, Hoxa-10
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1.8).

HXC13_HUMAN
θ value	2.36792 (rank : 195)	NC score	0.263563 (rank : 210)
Query Neighborhood Hits	276	Target Neighborhood Hits	336	Shared Neighborhood Hits	243
SwissProt Accessions	P31276, Q96J32, Q9NR24, Q9NYD5	Gene names	HOXC13, HOX3G
Domain Architecture
Description	Homeobox protein Hox-C13 (Hox-3G).

HXC13_MOUSE
θ value	2.36792 (rank : 196)	NC score	0.263515 (rank : 211)
Query Neighborhood Hits	276	Target Neighborhood Hits	337	Shared Neighborhood Hits	243
SwissProt Accessions	P50207, Q53Z78, Q920I7	Gene names	Hoxc13, Hoxc-13
Domain Architecture
Description	Homeobox protein Hox-C13.

NKX32_HUMAN
θ value	2.36792 (rank : 197)	NC score	0.278175 (rank : 176)
Query Neighborhood Hits	276	Target Neighborhood Hits	323	Shared Neighborhood Hits	238
SwissProt Accessions	P78367	Gene names	BAPX1, NKX3B
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

NKX32_MOUSE
θ value	2.36792 (rank : 198)	NC score	0.277515 (rank : 178)
Query Neighborhood Hits	276	Target Neighborhood Hits	326	Shared Neighborhood Hits	238
SwissProt Accessions	P97503	Gene names	Bapx1, Nkx-3.2, Nkx3-2, Nkx3b
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

PHX2B_HUMAN
θ value	2.36792 (rank : 199)	NC score	0.255997 (rank : 229)
Query Neighborhood Hits	276	Target Neighborhood Hits	407	Shared Neighborhood Hits	232
SwissProt Accessions	Q99453, Q6PJD9	Gene names	PHOX2B, PMX2B
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

PHX2B_MOUSE
θ value	2.36792 (rank : 200)	NC score	0.255997 (rank : 230)
Query Neighborhood Hits	276	Target Neighborhood Hits	407	Shared Neighborhood Hits	232
SwissProt Accessions	O35690	Gene names	Phox2b, Pmx2b
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

PO6F2_MOUSE
θ value	2.36792 (rank : 201)	NC score	0.165823 (rank : 293)
Query Neighborhood Hits	276	Target Neighborhood Hits	639	Shared Neighborhood Hits	224
SwissProt Accessions	Q8BJI4	Gene names	Pou6f2
Domain Architecture	No domain graphic available
Description	POU domain, class 6, transcription factor 2.

TLX1_HUMAN
θ value	2.36792 (rank : 202)	NC score	0.284036 (rank : 158)
Query Neighborhood Hits	276	Target Neighborhood Hits	347	Shared Neighborhood Hits	238
SwissProt Accessions	P31314, O75699, Q9HCA0	Gene names	TLX1, HOX11, TCL3
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (TCL-3 proto-oncogene).

TLX2_HUMAN
θ value	2.36792 (rank : 203)	NC score	0.284778 (rank : 155)
Query Neighborhood Hits	276	Target Neighborhood Hits	352	Shared Neighborhood Hits	236
SwissProt Accessions	O43763, Q9UQ48	Gene names	TLX2, HOX11L1, NCX
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Neural crest homeobox protein).

TLX2_MOUSE
θ value	2.36792 (rank : 204)	NC score	0.285346 (rank : 154)
Query Neighborhood Hits	276	Target Neighborhood Hits	336	Shared Neighborhood Hits	236
SwissProt Accessions	Q61663	Gene names	Tlx2, Hox11l1, Tlx1l1
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Homeobox TLX-2) (PMUR10F).

ZHX2_HUMAN
θ value	2.36792 (rank : 205)	NC score	0.162771 (rank : 295)
Query Neighborhood Hits	276	Target Neighborhood Hits	347	Shared Neighborhood Hits	140
SwissProt Accessions	Q9Y6X8	Gene names	ZHX2, AFR1, KIAA0854, RAF
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

ZHX2_MOUSE
θ value	2.36792 (rank : 206)	NC score	0.161107 (rank : 296)
Query Neighborhood Hits	276	Target Neighborhood Hits	435	Shared Neighborhood Hits	139
SwissProt Accessions	Q8C0C0	Gene names	Zhx2, Afr1, Raf
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

BARH1_HUMAN
θ value	3.0926 (rank : 207)	NC score	0.271132 (rank : 190)
Query Neighborhood Hits	276	Target Neighborhood Hits	373	Shared Neighborhood Hits	240
SwissProt Accessions	Q9BZE3, Q9NY88	Gene names	BARHL1
Domain Architecture
Description	BarH-like 1 homeobox protein.

BARH1_MOUSE
θ value	3.0926 (rank : 208)	NC score	0.265856 (rank : 206)
Query Neighborhood Hits	276	Target Neighborhood Hits	350	Shared Neighborhood Hits	239
SwissProt Accessions	P63157, Q9JK26	Gene names	Barhl1, Bhx1, Mbh2
Domain Architecture	No domain graphic available
Description	BarH-like 1 homeobox protein (Bar-class homeodomain protein MBH2) (BarH-related homeobox protein 1).

EVX1_HUMAN
θ value	3.0926 (rank : 209)	NC score	0.260047 (rank : 223)
Query Neighborhood Hits	276	Target Neighborhood Hits	349	Shared Neighborhood Hits	230
SwissProt Accessions	P49640	Gene names	EVX1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

EVX1_MOUSE
θ value	3.0926 (rank : 210)	NC score	0.261765 (rank : 216)
Query Neighborhood Hits	276	Target Neighborhood Hits	350	Shared Neighborhood Hits	230
SwissProt Accessions	P23683	Gene names	Evx1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

HXB9_HUMAN
θ value	3.0926 (rank : 211)	NC score	0.282455 (rank : 166)
Query Neighborhood Hits	276	Target Neighborhood Hits	344	Shared Neighborhood Hits	235
SwissProt Accessions	P17482, Q9H1I1	Gene names	HOXB9, HOX2E
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5).

HXB9_MOUSE
θ value	3.0926 (rank : 212)	NC score	0.285678 (rank : 153)
Query Neighborhood Hits	276	Target Neighborhood Hits	344	Shared Neighborhood Hits	234
SwissProt Accessions	P20615	Gene names	Hoxb9, Hox-2.5, Hoxb-9
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2.5).

HXD10_HUMAN
θ value	3.0926 (rank : 213)	NC score	0.288340 (rank : 145)
Query Neighborhood Hits	276	Target Neighborhood Hits	392	Shared Neighborhood Hits	245
SwissProt Accessions	P28358	Gene names	HOXD10, HOX4D
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4D) (Hox-4E).

HXD10_MOUSE
θ value	3.0926 (rank : 214)	NC score	0.288633 (rank : 143)
Query Neighborhood Hits	276	Target Neighborhood Hits	392	Shared Neighborhood Hits	245
SwissProt Accessions	P28359, Q91WU9	Gene names	Hoxd10, Hox-4.5, Hoxd-10
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4.5) (Hox-5.3).

HXD11_HUMAN
θ value	3.0926 (rank : 215)	NC score	0.281962 (rank : 169)
Query Neighborhood Hits	276	Target Neighborhood Hits	353	Shared Neighborhood Hits	242
SwissProt Accessions	P31277, Q9NS02	Gene names	HOXD11, HOX4F
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4F).

LBX1_HUMAN
θ value	3.0926 (rank : 216)	NC score	0.287930 (rank : 149)
Query Neighborhood Hits	276	Target Neighborhood Hits	357	Shared Neighborhood Hits	248
SwissProt Accessions	P52954	Gene names	LBX1
Domain Architecture
Description	Transcription factor LBX1.

LRCH3_MOUSE
θ value	3.0926 (rank : 217)	NC score	0.002872 (rank : 371)
Query Neighborhood Hits	276	Target Neighborhood Hits	257	Shared Neighborhood Hits	2
SwissProt Accessions	Q8BVU0, Q3U222, Q3UZ74	Gene names	Lrch3
Domain Architecture	No domain graphic available
Description	Leucine-rich repeats and calponin homology domain-containing protein 3 precursor.

NKX24_HUMAN
θ value	3.0926 (rank : 218)	NC score	0.275296 (rank : 181)
Query Neighborhood Hits	276	Target Neighborhood Hits	366	Shared Neighborhood Hits	238
SwissProt Accessions	Q9H2Z4	Gene names	NKX2-4, NKX2D
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

NKX24_MOUSE
θ value	3.0926 (rank : 219)	NC score	0.271889 (rank : 188)
Query Neighborhood Hits	276	Target Neighborhood Hits	356	Shared Neighborhood Hits	236
SwissProt Accessions	Q9EQM3, Q9EQM4	Gene names	Nkx2-4, Nkx2d
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

PAX3_HUMAN
θ value	3.0926 (rank : 220)	NC score	0.230317 (rank : 267)
Query Neighborhood Hits	276	Target Neighborhood Hits	513	Shared Neighborhood Hits	245
SwissProt Accessions	P23760, Q16448	Gene names	PAX3, HUP2
Domain Architecture
Description	Paired box protein Pax-3 (HUP2).

PAX3_MOUSE
θ value	3.0926 (rank : 221)	NC score	0.230024 (rank : 268)
Query Neighborhood Hits	276	Target Neighborhood Hits	478	Shared Neighborhood Hits	245
SwissProt Accessions	P24610, Q3UFQ9, Q8BRE7, Q9CXI6	Gene names	Pax3, Pax-3
Domain Architecture
Description	Paired box protein Pax-3.

PO2F1_HUMAN
θ value	3.0926 (rank : 222)	NC score	0.134807 (rank : 313)
Query Neighborhood Hits	276	Target Neighborhood Hits	426	Shared Neighborhood Hits	230
SwissProt Accessions	P14859, Q5TBT7, Q6PK46, Q8NEU9, Q9BPV1	Gene names	POU2F1, OCT1, OTF1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

TLX3_HUMAN
θ value	3.0926 (rank : 223)	NC score	0.282295 (rank : 167)
Query Neighborhood Hits	276	Target Neighborhood Hits	403	Shared Neighborhood Hits	237
SwissProt Accessions	O43711, Q96AD3	Gene names	TLX3, HOX11L2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox protein Hox-11L2).

TLX3_MOUSE
θ value	3.0926 (rank : 224)	NC score	0.295005 (rank : 119)
Query Neighborhood Hits	276	Target Neighborhood Hits	346	Shared Neighborhood Hits	238
SwissProt Accessions	O55144	Gene names	Tlx3, Hox11l2, Rnx, Tlx1l2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox TLX-3) (Homeobox protein Hox-11L2) (Respiratory neuron homeobox protein).

ARX_HUMAN
θ value	4.03905 (rank : 225)	NC score	0.248620 (rank : 241)
Query Neighborhood Hits	276	Target Neighborhood Hits	401	Shared Neighborhood Hits	237
SwissProt Accessions	Q96QS3	Gene names	ARX
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

ARX_MOUSE
θ value	4.03905 (rank : 226)	NC score	0.247924 (rank : 242)
Query Neighborhood Hits	276	Target Neighborhood Hits	398	Shared Neighborhood Hits	238
SwissProt Accessions	O35085, Q9QYT4	Gene names	Arx
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

DLX4_MOUSE
θ value	4.03905 (rank : 227)	NC score	0.272089 (rank : 186)
Query Neighborhood Hits	276	Target Neighborhood Hits	352	Shared Neighborhood Hits	243
SwissProt Accessions	P70436, Q3UM51, Q8R4I3	Gene names	Dlx4, Dlx7
Domain Architecture
Description	Homeobox protein DLX-4 (DLX-7).

EDAR_HUMAN
θ value	4.03905 (rank : 228)	NC score	0.012613 (rank : 363)
Query Neighborhood Hits	276	Target Neighborhood Hits	84	Shared Neighborhood Hits	2
SwissProt Accessions	Q9UNE0, Q9UND9	Gene names	EDAR, DL
Domain Architecture
Description	Tumor necrosis factor receptor superfamily member EDAR precursor (Anhidrotic ectodysplasin receptor 1) (Ectodysplasin-A receptor) (EDA- A1 receptor) (Ectodermal dysplasia receptor) (Downless homolog).

GSC_MOUSE
θ value	4.03905 (rank : 229)	NC score	0.272579 (rank : 183)
Query Neighborhood Hits	276	Target Neighborhood Hits	368	Shared Neighborhood Hits	242
SwissProt Accessions	Q02591	Gene names	Gsc
Domain Architecture
Description	Homeobox protein goosecoid.

HHEX_HUMAN
θ value	4.03905 (rank : 230)	NC score	0.296151 (rank : 115)
Query Neighborhood Hits	276	Target Neighborhood Hits	358	Shared Neighborhood Hits	232
SwissProt Accessions	Q03014	Gene names	HHEX, HEX, PRH, PRHX
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

HHEX_MOUSE
θ value	4.03905 (rank : 231)	NC score	0.289366 (rank : 139)
Query Neighborhood Hits	276	Target Neighborhood Hits	350	Shared Neighborhood Hits	235
SwissProt Accessions	P43120	Gene names	Hhex, Prhx
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

HXB13_HUMAN
θ value	4.03905 (rank : 232)	NC score	0.279813 (rank : 172)
Query Neighborhood Hits	276	Target Neighborhood Hits	377	Shared Neighborhood Hits	247
SwissProt Accessions	Q92826, Q96QM4, Q99810	Gene names	HOXB13
Domain Architecture
Description	Homeobox protein Hox-B13.

PRRX1_HUMAN
θ value	4.03905 (rank : 233)	NC score	0.243174 (rank : 253)
Query Neighborhood Hits	276	Target Neighborhood Hits	347	Shared Neighborhood Hits	238
SwissProt Accessions	P54821, O60807	Gene names	PRRX1, PMX1
Domain Architecture
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein PHOX1).

PRRX1_MOUSE
θ value	4.03905 (rank : 234)	NC score	0.242419 (rank : 254)
Query Neighborhood Hits	276	Target Neighborhood Hits	346	Shared Neighborhood Hits	236
SwissProt Accessions	P63013, P43271, Q02810	Gene names	Prrx1, Pmx, Pmx1
Domain Architecture	No domain graphic available
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein mHox) (Homeobox protein K-2).

ZFHX2_HUMAN
θ value	4.03905 (rank : 235)	NC score	0.176993 (rank : 292)
Query Neighborhood Hits	276	Target Neighborhood Hits	1178	Shared Neighborhood Hits	232
SwissProt Accessions	Q9C0A1	Gene names	ZFHX2, KIAA1762
Domain Architecture
Description	Zinc finger homeobox protein 2.

BARH2_HUMAN
θ value	5.27518 (rank : 236)	NC score	0.261416 (rank : 217)
Query Neighborhood Hits	276	Target Neighborhood Hits	419	Shared Neighborhood Hits	240
SwissProt Accessions	Q9NY43, Q7Z4N7	Gene names	BARHL2
Domain Architecture
Description	BarH-like 2 homeobox protein.

BARH2_MOUSE
θ value	5.27518 (rank : 237)	NC score	0.261398 (rank : 218)
Query Neighborhood Hits	276	Target Neighborhood Hits	397	Shared Neighborhood Hits	240
SwissProt Accessions	Q8VIB5, Q66L43	Gene names	Barhl2, Barh1, Mbh1
Domain Architecture	No domain graphic available
Description	BarH-like 2 homeobox protein (Bar-class homeodomain protein MBH1) (Homeobox protein B-H1).

CHX10_HUMAN
θ value	5.27518 (rank : 238)	NC score	0.229448 (rank : 271)
Query Neighborhood Hits	276	Target Neighborhood Hits	340	Shared Neighborhood Hits	228
SwissProt Accessions	P58304	Gene names	CHX10, VSX2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

CHX10_MOUSE
θ value	5.27518 (rank : 239)	NC score	0.229432 (rank : 272)
Query Neighborhood Hits	276	Target Neighborhood Hits	340	Shared Neighborhood Hits	228
SwissProt Accessions	Q61412	Gene names	Chx10, Vsx2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

CP135_MOUSE
θ value	5.27518 (rank : 240)	NC score	-0.006629 (rank : 373)
Query Neighborhood Hits	276	Target Neighborhood Hits	1278	Shared Neighborhood Hits	2
SwissProt Accessions	Q6P5D4, Q6A030	Gene names	Cep135, Cep4, Kiaa0635
Domain Architecture	No domain graphic available
Description	Centrosomal protein of 135 kDa (Cep135 protein) (Centrosomal protein 4).

GSC_HUMAN
θ value	5.27518 (rank : 241)	NC score	0.276839 (rank : 179)
Query Neighborhood Hits	276	Target Neighborhood Hits	369	Shared Neighborhood Hits	245
SwissProt Accessions	P56915, Q86YR1	Gene names	GSC
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid.

HXB13_MOUSE
θ value	5.27518 (rank : 242)	NC score	0.272007 (rank : 187)
Query Neighborhood Hits	276	Target Neighborhood Hits	384	Shared Neighborhood Hits	244
SwissProt Accessions	P70321, Q80Y12	Gene names	Hoxb13
Domain Architecture
Description	Homeobox protein Hox-B13.

RX_HUMAN
θ value	5.27518 (rank : 243)	NC score	0.249417 (rank : 240)
Query Neighborhood Hits	276	Target Neighborhood Hits	423	Shared Neighborhood Hits	240
SwissProt Accessions	Q9Y2V3	Gene names	RAX, RX
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

RX_MOUSE
θ value	5.27518 (rank : 244)	NC score	0.250661 (rank : 239)
Query Neighborhood Hits	276	Target Neighborhood Hits	429	Shared Neighborhood Hits	238
SwissProt Accessions	O35602, O08748	Gene names	Rax, Rx
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

EMX1_HUMAN
θ value	6.88961 (rank : 245)	NC score	0.287160 (rank : 151)
Query Neighborhood Hits	276	Target Neighborhood Hits	336	Shared Neighborhood Hits	246
SwissProt Accessions	Q04741, Q86XB0	Gene names	EMX1
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty spiracles- like protein 1).

HME1_HUMAN
θ value	6.88961 (rank : 246)	NC score	0.272223 (rank : 185)
Query Neighborhood Hits	276	Target Neighborhood Hits	384	Shared Neighborhood Hits	240
SwissProt Accessions	Q05925	Gene names	EN1
Domain Architecture
Description	Homeobox protein engrailed-1 (Hu-En-1).

HME1_MOUSE
θ value	6.88961 (rank : 247)	NC score	0.271854 (rank : 189)
Query Neighborhood Hits	276	Target Neighborhood Hits	397	Shared Neighborhood Hits	240
SwissProt Accessions	P09065	Gene names	En1, En-1
Domain Architecture
Description	Homeobox protein engrailed-1 (Mo-En-1).

HME2_HUMAN
θ value	6.88961 (rank : 248)	NC score	0.280253 (rank : 171)
Query Neighborhood Hits	276	Target Neighborhood Hits	355	Shared Neighborhood Hits	247
SwissProt Accessions	P19622	Gene names	EN2
Domain Architecture
Description	Homeobox protein engrailed-2 (Hu-En-2).

HME2_MOUSE
θ value	6.88961 (rank : 249)	NC score	0.278933 (rank : 174)
Query Neighborhood Hits	276	Target Neighborhood Hits	352	Shared Neighborhood Hits	247
SwissProt Accessions	P09066	Gene names	En2, En-2
Domain Architecture
Description	Homeobox protein engrailed-2 (Mo-En-2).

HXC11_HUMAN
θ value	6.88961 (rank : 250)	NC score	0.270284 (rank : 193)
Query Neighborhood Hits	276	Target Neighborhood Hits	349	Shared Neighborhood Hits	238
SwissProt Accessions	O43248, Q96DH2	Gene names	HOXC11
Domain Architecture
Description	Homeobox protein Hox-C11.

HXC4_HUMAN
θ value	6.88961 (rank : 251)	NC score	0.287256 (rank : 150)
Query Neighborhood Hits	276	Target Neighborhood Hits	361	Shared Neighborhood Hits	239
SwissProt Accessions	P09017	Gene names	HOXC4, HOX3E
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3E) (CP19).

KHDR3_MOUSE
θ value	6.88961 (rank : 252)	NC score	0.012401 (rank : 364)
Query Neighborhood Hits	276	Target Neighborhood Hits	26	Shared Neighborhood Hits	3
SwissProt Accessions	Q9R226, O88624	Gene names	Khdrbs3, Salp, Slm2
Domain Architecture	No domain graphic available
Description	KH domain-containing, RNA-binding, signal transduction-associated protein 3 (Sam68-like mammalian protein 2) (SLM-2) (RNA-binding protein Etoile).

LBX1_MOUSE
θ value	6.88961 (rank : 253)	NC score	0.282718 (rank : 164)
Query Neighborhood Hits	276	Target Neighborhood Hits	349	Shared Neighborhood Hits	247
SwissProt Accessions	P52955	Gene names	Lbx1, Lbx1h
Domain Architecture
Description	Transcription factor LBX1.

LMX1A_HUMAN
θ value	6.88961 (rank : 254)	NC score	0.132778 (rank : 314)
Query Neighborhood Hits	276	Target Neighborhood Hits	406	Shared Neighborhood Hits	229
SwissProt Accessions	Q8TE12, Q8TE11	Gene names	LMX1A
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

LY10_HUMAN
θ value	6.88961 (rank : 255)	NC score	0.005633 (rank : 369)
Query Neighborhood Hits	276	Target Neighborhood Hits	151	Shared Neighborhood Hits	4
SwissProt Accessions	Q13342, Q13341, Q92881, Q96TG3	Gene names	SP140, LYSP100
Domain Architecture
Description	Nuclear body protein SP140 (Nuclear autoantigen Sp-140) (Speckled 140 kDa) (LYSp100 protein) (Lymphoid-restricted homolog of Sp100).

MINT_MOUSE
θ value	6.88961 (rank : 256)	NC score	0.012244 (rank : 365)
Query Neighborhood Hits	276	Target Neighborhood Hits	1514	Shared Neighborhood Hits	28
SwissProt Accessions	Q62504, Q80TN9, Q99PS4, Q9QZW2	Gene names	Spen, Kiaa0929, Mint, Sharp
Domain Architecture
Description	Msx2-interacting protein (SPEN homolog) (SMART/HDAC1-associated repressor protein).

NKX23_HUMAN
θ value	6.88961 (rank : 257)	NC score	0.269025 (rank : 196)
Query Neighborhood Hits	276	Target Neighborhood Hits	346	Shared Neighborhood Hits	247
SwissProt Accessions	Q8TAU0, Q9NYS6	Gene names	NKX2-3, NKX23, NKX2C
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NKX-2.3) (Homeobox protein NK-2 homolog C).

RB15B_MOUSE
θ value	6.88961 (rank : 258)	NC score	0.004066 (rank : 370)
Query Neighborhood Hits	276	Target Neighborhood Hits	284	Shared Neighborhood Hits	3
SwissProt Accessions	Q6PHZ5, Q8C6G2	Gene names	Rbm15b
Domain Architecture	No domain graphic available
Description	Putative RNA-binding protein 15B (RNA-binding motif protein 15B).

UBR1_MOUSE
θ value	6.88961 (rank : 259)	NC score	0.010456 (rank : 366)
Query Neighborhood Hits	276	Target Neighborhood Hits	52	Shared Neighborhood Hits	3
SwissProt Accessions	O70481, Q5BKR8, Q792M3, Q8BN40, Q8C5K3	Gene names	Ubr1
Domain Architecture	No domain graphic available
Description	Ubiquitin-protein ligase E3 component N-recognin-1 (EC 6.-.-.-) (Ubiquitin-protein ligase E3-alpha-1) (Ubiquitin-protein ligase E3- alpha-I).

VAX1_HUMAN
θ value	6.88961 (rank : 260)	NC score	0.260813 (rank : 219)
Query Neighborhood Hits	276	Target Neighborhood Hits	355	Shared Neighborhood Hits	234
SwissProt Accessions	Q5SQQ9, Q6ZSX0	Gene names	VAX1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

VAX1_MOUSE
θ value	6.88961 (rank : 261)	NC score	0.260784 (rank : 220)
Query Neighborhood Hits	276	Target Neighborhood Hits	351	Shared Neighborhood Hits	234
SwissProt Accessions	Q2NKI2, O88880	Gene names	Vax1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

VAX2_HUMAN
θ value	6.88961 (rank : 262)	NC score	0.253818 (rank : 235)
Query Neighborhood Hits	276	Target Neighborhood Hits	337	Shared Neighborhood Hits	231
SwissProt Accessions	Q9UIW0	Gene names	VAX2
Domain Architecture
Description	Ventral anterior homeobox 2.

VAX2_MOUSE
θ value	6.88961 (rank : 263)	NC score	0.253258 (rank : 237)
Query Neighborhood Hits	276	Target Neighborhood Hits	338	Shared Neighborhood Hits	231
SwissProt Accessions	Q9WTP9	Gene names	Vax2, Vex
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 2 (Ventral retina homeodomain protein).

EVX2_MOUSE
θ value	8.99809 (rank : 264)	NC score	0.259517 (rank : 224)
Query Neighborhood Hits	276	Target Neighborhood Hits	327	Shared Neighborhood Hits	229
SwissProt Accessions	P49749	Gene names	Evx2, Evx-2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

GSCL_MOUSE
θ value	8.99809 (rank : 265)	NC score	0.233204 (rank : 265)
Query Neighborhood Hits	276	Target Neighborhood Hits	339	Shared Neighborhood Hits	233
SwissProt Accessions	P56916	Gene names	Gscl
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid-like (GSC-2).

HMX3_MOUSE
θ value	8.99809 (rank : 266)	NC score	0.270989 (rank : 191)
Query Neighborhood Hits	276	Target Neighborhood Hits	342	Shared Neighborhood Hits	237
SwissProt Accessions	P42581	Gene names	Hmx3, Nkx-5.1, Nkx5-1
Domain Architecture
Description	Homeobox protein HMX3 (Homeobox protein Nkx-5.1).

HXD13_HUMAN
θ value	8.99809 (rank : 267)	NC score	0.267941 (rank : 199)
Query Neighborhood Hits	276	Target Neighborhood Hits	332	Shared Neighborhood Hits	243
SwissProt Accessions	P35453	Gene names	HOXD13, HOX4I
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4I).

HXD13_MOUSE
θ value	8.99809 (rank : 268)	NC score	0.267934 (rank : 200)
Query Neighborhood Hits	276	Target Neighborhood Hits	324	Shared Neighborhood Hits	243
SwissProt Accessions	P70217, Q2VPB0, Q2VPB1, Q64177	Gene names	Hoxd13, Hox-4.8
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4.8).

LHX3_HUMAN
θ value	8.99809 (rank : 269)	NC score	0.163594 (rank : 294)
Query Neighborhood Hits	276	Target Neighborhood Hits	474	Shared Neighborhood Hits	248
SwissProt Accessions	Q9UBR4, Q9NZB5, Q9P0I8, Q9P0I9	Gene names	LHX3
Domain Architecture
Description	LIM/homeobox protein Lhx3.

MEOX1_MOUSE
θ value	8.99809 (rank : 270)	NC score	0.270477 (rank : 192)
Query Neighborhood Hits	276	Target Neighborhood Hits	345	Shared Neighborhood Hits	238
SwissProt Accessions	P32442	Gene names	Meox1, Mox-1, Mox1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

MEOX2_HUMAN
θ value	8.99809 (rank : 271)	NC score	0.266814 (rank : 203)
Query Neighborhood Hits	276	Target Neighborhood Hits	340	Shared Neighborhood Hits	233
SwissProt Accessions	P50222, O75263, Q9UPL6	Gene names	MEOX2, GAX, MOX2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth arrest-specific homeobox).

MEOX2_MOUSE
θ value	8.99809 (rank : 272)	NC score	0.266677 (rank : 205)
Query Neighborhood Hits	276	Target Neighborhood Hits	341	Shared Neighborhood Hits	233
SwissProt Accessions	P32443, Q544T6	Gene names	Meox2, Gax, Mox-2, Mox2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2).

PO3F2_HUMAN
θ value	8.99809 (rank : 273)	NC score	0.088407 (rank : 334)
Query Neighborhood Hits	276	Target Neighborhood Hits	308	Shared Neighborhood Hits	196
SwissProt Accessions	P20265, Q14960, Q86V54, Q9UJL0	Gene names	POU3F2, BRN2, OCT7, OTF7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

PO3F2_MOUSE
θ value	8.99809 (rank : 274)	NC score	0.088404 (rank : 336)
Query Neighborhood Hits	276	Target Neighborhood Hits	313	Shared Neighborhood Hits	196
SwissProt Accessions	P31360	Gene names	Pou3f2, Brn-2, Brn2, Otf7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

PROP1_HUMAN
θ value	8.99809 (rank : 275)	NC score	0.257233 (rank : 226)
Query Neighborhood Hits	276	Target Neighborhood Hits	354	Shared Neighborhood Hits	247
SwissProt Accessions	O75360	Gene names	PROP1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

PROP1_MOUSE
θ value	8.99809 (rank : 276)	NC score	0.245965 (rank : 243)
Query Neighborhood Hits	276	Target Neighborhood Hits	361	Shared Neighborhood Hits	245
SwissProt Accessions	P97458	Gene names	Prop1, Prop-1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

BARX1_HUMAN
θ value	θ > 10 (rank : 277)	NC score	0.253806 (rank : 236)
Query Neighborhood Hits	276	Target Neighborhood Hits	326	Shared Neighborhood Hits	230
SwissProt Accessions	Q9HBU1	Gene names	BARX1
Domain Architecture
Description	Homeobox protein BarH-like 1.

BARX1_MOUSE
θ value	θ > 10 (rank : 278)	NC score	0.253101 (rank : 238)
Query Neighborhood Hits	276	Target Neighborhood Hits	324	Shared Neighborhood Hits	230
SwissProt Accessions	Q9ER42, O09066, P70159, Q9ERV2	Gene names	Barx1
Domain Architecture
Description	Homeobox protein BarH-like 1.

BARX2_HUMAN
θ value	θ > 10 (rank : 279)	NC score	0.265399 (rank : 207)
Query Neighborhood Hits	276	Target Neighborhood Hits	387	Shared Neighborhood Hits	238
SwissProt Accessions	Q9UMQ3, O43518	Gene names	BARX2
Domain Architecture
Description	Homeobox protein BarH-like 2.

BARX2_MOUSE
θ value	θ > 10 (rank : 280)	NC score	0.264741 (rank : 209)
Query Neighborhood Hits	276	Target Neighborhood Hits	335	Shared Neighborhood Hits	237
SwissProt Accessions	O08686	Gene names	Barx2
Domain Architecture
Description	Homeobox protein BarH-like 2.

CDX1_HUMAN
θ value	θ > 10 (rank : 281)	NC score	0.268903 (rank : 197)
Query Neighborhood Hits	276	Target Neighborhood Hits	382	Shared Neighborhood Hits	231
SwissProt Accessions	P47902, Q4VAU4, Q9NYK8	Gene names	CDX1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

CDX1_MOUSE
θ value	θ > 10 (rank : 282)	NC score	0.267419 (rank : 202)
Query Neighborhood Hits	276	Target Neighborhood Hits	379	Shared Neighborhood Hits	230
SwissProt Accessions	P18111, Q8VCF7	Gene names	Cdx1, Cdx-1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

CDX2_HUMAN
θ value	θ > 10 (rank : 283)	NC score	0.261814 (rank : 214)
Query Neighborhood Hits	276	Target Neighborhood Hits	330	Shared Neighborhood Hits	225
SwissProt Accessions	Q99626, O00503, Q969L8	Gene names	CDX2, CDX3
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2) (CDX-3).

CDX2_MOUSE
θ value	θ > 10 (rank : 284)	NC score	0.260277 (rank : 221)
Query Neighborhood Hits	276	Target Neighborhood Hits	336	Shared Neighborhood Hits	225
SwissProt Accessions	P43241	Gene names	Cdx2, Cdx-2
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2).

CDX4_HUMAN
θ value	θ > 10 (rank : 285)	NC score	0.265114 (rank : 208)
Query Neighborhood Hits	276	Target Neighborhood Hits	366	Shared Neighborhood Hits	236
SwissProt Accessions	O14627, Q5JS20	Gene names	CDX4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

CDX4_MOUSE
θ value	θ > 10 (rank : 286)	NC score	0.263127 (rank : 212)
Query Neighborhood Hits	276	Target Neighborhood Hits	378	Shared Neighborhood Hits	234
SwissProt Accessions	Q07424	Gene names	Cdx4, Cdx-4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

CRX_HUMAN
θ value	θ > 10 (rank : 287)	NC score	0.228715 (rank : 275)
Query Neighborhood Hits	276	Target Neighborhood Hits	360	Shared Neighborhood Hits	235
SwissProt Accessions	O43186	Gene names	CRX, CORD2
Domain Architecture
Description	Cone-rod homeobox protein.

CRX_MOUSE
θ value	θ > 10 (rank : 288)	NC score	0.225794 (rank : 276)
Query Neighborhood Hits	276	Target Neighborhood Hits	359	Shared Neighborhood Hits	231
SwissProt Accessions	O54751	Gene names	Crx
Domain Architecture
Description	Cone-rod homeobox protein.

CUTL1_HUMAN
θ value	θ > 10 (rank : 289)	NC score	0.055615 (rank : 359)
Query Neighborhood Hits	276	Target Neighborhood Hits	1574	Shared Neighborhood Hits	160
SwissProt Accessions	P39880, Q6NYH4, Q9UEV5	Gene names	CUTL1
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP).

CUTL1_MOUSE
θ value	θ > 10 (rank : 290)	NC score	0.063544 (rank : 356)
Query Neighborhood Hits	276	Target Neighborhood Hits	1620	Shared Neighborhood Hits	164
SwissProt Accessions	P53564, O08994, P70301, Q571L6, Q91ZD2	Gene names	Cutl1, Cux, Cux1, Kiaa4047
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP) (Homeobox protein Cux).

CUTL2_HUMAN
θ value	θ > 10 (rank : 291)	NC score	0.098539 (rank : 330)
Query Neighborhood Hits	276	Target Neighborhood Hits	906	Shared Neighborhood Hits	141
SwissProt Accessions	O14529	Gene names	CUTL2, KIAA0293
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

CUTL2_MOUSE
θ value	θ > 10 (rank : 292)	NC score	0.103355 (rank : 328)
Query Neighborhood Hits	276	Target Neighborhood Hits	771	Shared Neighborhood Hits	131
SwissProt Accessions	P70298	Gene names	Cutl2
Domain Architecture
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

DBX1_MOUSE
θ value	θ > 10 (rank : 293)	NC score	0.270160 (rank : 194)
Query Neighborhood Hits	276	Target Neighborhood Hits	346	Shared Neighborhood Hits	236
SwissProt Accessions	P52950	Gene names	Dbx1, Dbx
Domain Architecture
Description	Homeobox protein DBX1.

DUX1_HUMAN
θ value	θ > 10 (rank : 294)	NC score	0.230961 (rank : 266)
Query Neighborhood Hits	276	Target Neighborhood Hits	330	Shared Neighborhood Hits	238
SwissProt Accessions	O43812	Gene names	DUX1
Domain Architecture	No domain graphic available
Description	Double homeobox protein 1.

DUX2_HUMAN
θ value	θ > 10 (rank : 295)	NC score	0.119562 (rank : 319)
Query Neighborhood Hits	276	Target Neighborhood Hits	173	Shared Neighborhood Hits	121
SwissProt Accessions	O75505	Gene names	DUX2
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 2.

DUX3_HUMAN
θ value	θ > 10 (rank : 296)	NC score	0.220691 (rank : 280)
Query Neighborhood Hits	276	Target Neighborhood Hits	312	Shared Neighborhood Hits	232
SwissProt Accessions	Q96PT4, Q9UND2	Gene names	DUX3
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 3.

DUX4_HUMAN
θ value	θ > 10 (rank : 297)	NC score	0.224109 (rank : 278)
Query Neighborhood Hits	276	Target Neighborhood Hits	403	Shared Neighborhood Hits	239
SwissProt Accessions	Q9UBX2	Gene names	DUX4, DUX10
Domain Architecture	No domain graphic available
Description	Double homeobox protein 4 (Double homeobox protein 10) (Double homeobox protein 4/10).

DUX5_HUMAN
θ value	θ > 10 (rank : 298)	NC score	0.229418 (rank : 273)
Query Neighborhood Hits	276	Target Neighborhood Hits	330	Shared Neighborhood Hits	238
SwissProt Accessions	Q96PT3	Gene names	DUX5
Domain Architecture	No domain graphic available
Description	Double homeobox protein 5.

ESX1L_HUMAN
θ value	θ > 10 (rank : 299)	NC score	0.238458 (rank : 258)
Query Neighborhood Hits	276	Target Neighborhood Hits	498	Shared Neighborhood Hits	231
SwissProt Accessions	Q8N693, Q7Z6K7	Gene names	ESX1L, ESX1R
Domain Architecture
Description	Extraembryonic, spermatogenesis, homeobox 1-like protein.

GBX1_HUMAN
θ value	θ > 10 (rank : 300)	NC score	0.244268 (rank : 250)
Query Neighborhood Hits	276	Target Neighborhood Hits	334	Shared Neighborhood Hits	214
SwissProt Accessions	Q14549	Gene names	GBX1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

GBX1_MOUSE
θ value	θ > 10 (rank : 301)	NC score	0.243187 (rank : 252)
Query Neighborhood Hits	276	Target Neighborhood Hits	350	Shared Neighborhood Hits	214
SwissProt Accessions	P82976, Q8CGW5	Gene names	Gbx1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

GBX2_HUMAN
θ value	θ > 10 (rank : 302)	NC score	0.245028 (rank : 246)
Query Neighborhood Hits	276	Target Neighborhood Hits	322	Shared Neighborhood Hits	218
SwissProt Accessions	P52951, O43833, Q53RX5, Q9Y5Y1	Gene names	GBX2
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2).

GBX2_MOUSE
θ value	θ > 10 (rank : 303)	NC score	0.245536 (rank : 244)
Query Neighborhood Hits	276	Target Neighborhood Hits	326	Shared Neighborhood Hits	218
SwissProt Accessions	P48031	Gene names	Gbx2, Mmoxa, Stra7
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2) (Homeobox protein STRA7).

GSCL_HUMAN
θ value	θ > 10 (rank : 304)	NC score	0.237666 (rank : 260)
Query Neighborhood Hits	276	Target Neighborhood Hits	343	Shared Neighborhood Hits	233
SwissProt Accessions	O15499	Gene names	GSCL
Domain Architecture
Description	Homeobox protein goosecoid-like (GSC-2).

HESX1_HUMAN
θ value	θ > 10 (rank : 305)	NC score	0.236413 (rank : 261)
Query Neighborhood Hits	276	Target Neighborhood Hits	326	Shared Neighborhood Hits	225
SwissProt Accessions	Q9UBX0, Q99667	Gene names	HESX1, HANF
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (hAnf).

HESX1_MOUSE
θ value	θ > 10 (rank : 306)	NC score	0.239117 (rank : 257)
Query Neighborhood Hits	276	Target Neighborhood Hits	331	Shared Neighborhood Hits	225
SwissProt Accessions	Q61658, Q61047	Gene names	Hesx1, Hes-1, Rpx
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (Anterior- restricted homeobox protein) (Rathke pouch homeo box).

HLX1_MOUSE
θ value	θ > 10 (rank : 307)	NC score	0.278672 (rank : 175)
Query Neighborhood Hits	276	Target Neighborhood Hits	362	Shared Neighborhood Hits	240
SwissProt Accessions	Q61670	Gene names	Hlx1, Hlx
Domain Architecture
Description	Homeobox protein HLX1.

HMBX1_HUMAN
θ value	θ > 10 (rank : 308)	NC score	0.090698 (rank : 332)
Query Neighborhood Hits	276	Target Neighborhood Hits	118	Shared Neighborhood Hits	82
SwissProt Accessions	Q6NT76, Q3Y6P1, Q96GS5, Q9H701	Gene names	HMBOX1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

HMBX1_MOUSE
θ value	θ > 10 (rank : 309)	NC score	0.079238 (rank : 346)
Query Neighborhood Hits	276	Target Neighborhood Hits	117	Shared Neighborhood Hits	81
SwissProt Accessions	Q8BJA3, Q80WC2, Q8BWE7, Q99LV1	Gene names	Hmbox1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

HNF6_HUMAN
θ value	θ > 10 (rank : 310)	NC score	0.065284 (rank : 354)
Query Neighborhood Hits	276	Target Neighborhood Hits	127	Shared Neighborhood Hits	58
SwissProt Accessions	Q9UBC0, Q99744, Q9UMR6	Gene names	ONECUT1, HNF6, HNF6A
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

HNF6_MOUSE
θ value	θ > 10 (rank : 311)	NC score	0.063731 (rank : 355)
Query Neighborhood Hits	276	Target Neighborhood Hits	124	Shared Neighborhood Hits	60
SwissProt Accessions	O08755	Gene names	Onecut1, Hnf6, Hnf6a
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

HOP_HUMAN
θ value	θ > 10 (rank : 312)	NC score	0.078135 (rank : 347)
Query Neighborhood Hits	276	Target Neighborhood Hits	107	Shared Neighborhood Hits	64
SwissProt Accessions	Q9BPY8, Q8N0V6, Q96CI1	Gene names	HOP, HOD, LAGY, NECC1, OB1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Lung cancer-associated Y protein) (Odd homeobox protein 1) (Not expressed in choriocarcinoma protein 1).

HOP_MOUSE
θ value	θ > 10 (rank : 313)	NC score	0.087796 (rank : 340)
Query Neighborhood Hits	276	Target Neighborhood Hits	102	Shared Neighborhood Hits	63
SwissProt Accessions	Q8R1H0, Q8C1N5, Q8CJ22	Gene names	Hop, Hod, Ob1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Homeobox-only protein) (Odd homeobox protein 1) (mOB1).

HXA11_HUMAN
θ value	θ > 10 (rank : 314)	NC score	0.255247 (rank : 231)
Query Neighborhood Hits	276	Target Neighborhood Hits	334	Shared Neighborhood Hits	227
SwissProt Accessions	P31270	Gene names	HOXA11, HOX1I
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1I).

HXA11_MOUSE
θ value	θ > 10 (rank : 315)	NC score	0.254850 (rank : 232)
Query Neighborhood Hits	276	Target Neighborhood Hits	327	Shared Neighborhood Hits	227
SwissProt Accessions	P31311, Q3V026	Gene names	Hoxa11, Hox-1.9, Hoxa-11
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1.9).

HXC12_HUMAN
θ value	θ > 10 (rank : 316)	NC score	0.244852 (rank : 247)
Query Neighborhood Hits	276	Target Neighborhood Hits	313	Shared Neighborhood Hits	224
SwissProt Accessions	P31275, Q9BXJ6	Gene names	HOXC12, HOX3F
Domain Architecture
Description	Homeobox protein Hox-C12 (Hox-3F).

HXC12_MOUSE
θ value	θ > 10 (rank : 317)	NC score	0.244754 (rank : 248)
Query Neighborhood Hits	276	Target Neighborhood Hits	316	Shared Neighborhood Hits	224
SwissProt Accessions	Q8K5B8	Gene names	Hoxc12, Hox-3.8, Hoxc-12
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C12 (Hox-3.8).

HXD12_HUMAN
θ value	θ > 10 (rank : 318)	NC score	0.254479 (rank : 233)
Query Neighborhood Hits	276	Target Neighborhood Hits	334	Shared Neighborhood Hits	229
SwissProt Accessions	P35452, Q9NS03	Gene names	HOXD12, HOX4H
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4H).

HXD12_MOUSE
θ value	θ > 10 (rank : 319)	NC score	0.254297 (rank : 234)
Query Neighborhood Hits	276	Target Neighborhood Hits	370	Shared Neighborhood Hits	229
SwissProt Accessions	P23812	Gene names	Hoxd12, Hox-4.7, Hoxd-12
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4.7) (Hox-5.6).

ISL1_HUMAN
θ value	θ > 10 (rank : 320)	NC score	0.112166 (rank : 325)
Query Neighborhood Hits	276	Target Neighborhood Hits	421	Shared Neighborhood Hits	222
SwissProt Accessions	P61371, P20663, P47894	Gene names	ISL1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

ISL1_MOUSE
θ value	θ > 10 (rank : 321)	NC score	0.112166 (rank : 326)
Query Neighborhood Hits	276	Target Neighborhood Hits	421	Shared Neighborhood Hits	222
SwissProt Accessions	P61372, P20663, P47894, Q812D8	Gene names	Isl1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

ISL2_HUMAN
θ value	θ > 10 (rank : 322)	NC score	0.116243 (rank : 322)
Query Neighborhood Hits	276	Target Neighborhood Hits	435	Shared Neighborhood Hits	229
SwissProt Accessions	Q96A47	Gene names	ISL2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

ISL2_MOUSE
θ value	θ > 10 (rank : 323)	NC score	0.118519 (rank : 320)
Query Neighborhood Hits	276	Target Neighborhood Hits	426	Shared Neighborhood Hits	225
SwissProt Accessions	Q9CXV0	Gene names	Isl2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

LHX1_HUMAN
θ value	θ > 10 (rank : 324)	NC score	0.136997 (rank : 312)
Query Neighborhood Hits	276	Target Neighborhood Hits	453	Shared Neighborhood Hits	238
SwissProt Accessions	P48742, Q3MIW0	Gene names	LHX1, LIM1
Domain Architecture
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

LHX1_MOUSE
θ value	θ > 10 (rank : 325)	NC score	0.137476 (rank : 308)
Query Neighborhood Hits	276	Target Neighborhood Hits	453	Shared Neighborhood Hits	237
SwissProt Accessions	P63006, P36199	Gene names	Lhx1, Lim-1, Lim1
Domain Architecture	No domain graphic available
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

LHX2_HUMAN
θ value	θ > 10 (rank : 326)	NC score	0.144053 (rank : 299)
Query Neighborhood Hits	276	Target Neighborhood Hits	432	Shared Neighborhood Hits	240
SwissProt Accessions	P50458, O95860, Q8N1Z3	Gene names	LHX2, LH2
Domain Architecture
Description	LIM/homeobox protein Lhx2 (Homeobox protein LH-2).

LHX2_MOUSE
θ value	θ > 10 (rank : 327)	NC score	0.144348 (rank : 298)
Query Neighborhood Hits	276	Target Neighborhood Hits	431	Shared Neighborhood Hits	240
SwissProt Accessions	Q9Z0S2	Gene names	Lhx2
Domain Architecture
Description	LIM/homeobox protein Lhx2.

LHX3_MOUSE
θ value	θ > 10 (rank : 328)	NC score	0.142819 (rank : 300)
Query Neighborhood Hits	276	Target Neighborhood Hits	451	Shared Neighborhood Hits	240
SwissProt Accessions	P50481, Q61800, Q61801	Gene names	Lhx3, Lim-3, Lim3, Plim
Domain Architecture
Description	LIM/homeobox protein Lhx3 (Homeobox protein LIM-3) (Homeobox protein P-LIM) (LIM homeobox protein 3).

LHX5_HUMAN
θ value	θ > 10 (rank : 329)	NC score	0.139830 (rank : 304)
Query Neighborhood Hits	276	Target Neighborhood Hits	453	Shared Neighborhood Hits	237
SwissProt Accessions	Q9H2C1	Gene names	LHX5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

LHX5_MOUSE
θ value	θ > 10 (rank : 330)	NC score	0.138973 (rank : 306)
Query Neighborhood Hits	276	Target Neighborhood Hits	456	Shared Neighborhood Hits	237
SwissProt Accessions	P61375, P50459	Gene names	Lhx5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

LHX61_HUMAN
θ value	θ > 10 (rank : 331)	NC score	0.120765 (rank : 318)
Query Neighborhood Hits	276	Target Neighborhood Hits	412	Shared Neighborhood Hits	225
SwissProt Accessions	Q9UPM6, Q5T7S8, Q9NTK3, Q9UPM5	Gene names	LHX6, LHX6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1 (Lhx6).

LHX61_MOUSE
θ value	θ > 10 (rank : 332)	NC score	0.106922 (rank : 327)
Query Neighborhood Hits	276	Target Neighborhood Hits	396	Shared Neighborhood Hits	207
SwissProt Accessions	Q9R1R0, Q9R1R1	Gene names	Lhx6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1.

LHX6_MOUSE
θ value	θ > 10 (rank : 333)	NC score	0.117769 (rank : 321)
Query Neighborhood Hits	276	Target Neighborhood Hits	399	Shared Neighborhood Hits	221
SwissProt Accessions	O88706	Gene names	Lhx6
Domain Architecture
Description	LIM/homeobox protein Lhx6.

LHX8_MOUSE
θ value	θ > 10 (rank : 334)	NC score	0.114453 (rank : 323)
Query Neighborhood Hits	276	Target Neighborhood Hits	406	Shared Neighborhood Hits	218
SwissProt Accessions	O35652, O70163, O88707	Gene names	Lhx8, Lhx7
Domain Architecture
Description	LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3).

LHX9_HUMAN
θ value	θ > 10 (rank : 335)	NC score	0.138118 (rank : 307)
Query Neighborhood Hits	276	Target Neighborhood Hits	444	Shared Neighborhood Hits	237
SwissProt Accessions	Q9NQ69, Q5VUE3, Q9BYU6, Q9NQ70	Gene names	LHX9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

LHX9_MOUSE
θ value	θ > 10 (rank : 336)	NC score	0.137242 (rank : 311)
Query Neighborhood Hits	276	Target Neighborhood Hits	445	Shared Neighborhood Hits	237
SwissProt Accessions	Q9WUH2, Q9QYQ5, Q9QYQ6, Q9QZ00, Q9WU44	Gene names	Lhx9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

LMX1A_MOUSE
θ value	θ > 10 (rank : 337)	NC score	0.129921 (rank : 315)
Query Neighborhood Hits	276	Target Neighborhood Hits	405	Shared Neighborhood Hits	227
SwissProt Accessions	Q9JKU8	Gene names	Lmx1a
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

LMX1B_HUMAN
θ value	θ > 10 (rank : 338)	NC score	0.127590 (rank : 316)
Query Neighborhood Hits	276	Target Neighborhood Hits	404	Shared Neighborhood Hits	223
SwissProt Accessions	O60663, O75463	Gene names	LMX1B
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

LMX1B_MOUSE
θ value	θ > 10 (rank : 339)	NC score	0.125709 (rank : 317)
Query Neighborhood Hits	276	Target Neighborhood Hits	394	Shared Neighborhood Hits	222
SwissProt Accessions	O88609	Gene names	Lmx1b
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

NKX31_HUMAN
θ value	θ > 10 (rank : 340)	NC score	0.257032 (rank : 227)
Query Neighborhood Hits	276	Target Neighborhood Hits	331	Shared Neighborhood Hits	231
SwissProt Accessions	Q99801, O15465, Q9H2P4, Q9H2P5, Q9H2P6, Q9H2P7, Q9HBG0	Gene names	NKX3-1, NKX3.1, NKX3A
Domain Architecture
Description	Homeobox protein Nkx-3.1.

NKX31_MOUSE
θ value	θ > 10 (rank : 341)	NC score	0.260270 (rank : 222)
Query Neighborhood Hits	276	Target Neighborhood Hits	379	Shared Neighborhood Hits	231
SwissProt Accessions	P97436, O09087	Gene names	Nkx3-1, Nkx-3.1, Nkx3a
Domain Architecture
Description	Homeobox protein Nkx-3.1.

ONEC2_HUMAN
θ value	θ > 10 (rank : 342)	NC score	0.066675 (rank : 352)
Query Neighborhood Hits	276	Target Neighborhood Hits	115	Shared Neighborhood Hits	55
SwissProt Accessions	O95948	Gene names	ONECUT2
Domain Architecture
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

ONEC2_MOUSE
θ value	θ > 10 (rank : 343)	NC score	0.065350 (rank : 353)
Query Neighborhood Hits	276	Target Neighborhood Hits	123	Shared Neighborhood Hits	54
SwissProt Accessions	Q6XBJ3	Gene names	Onecut2, Oc2
Domain Architecture	No domain graphic available
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

OTX1_HUMAN
θ value	θ > 10 (rank : 344)	NC score	0.225234 (rank : 277)
Query Neighborhood Hits	276	Target Neighborhood Hits	379	Shared Neighborhood Hits	232
SwissProt Accessions	P32242, Q53TG6	Gene names	OTX1
Domain Architecture
Description	Homeobox protein OTX1.

OTX1_MOUSE
θ value	θ > 10 (rank : 345)	NC score	0.222433 (rank : 279)
Query Neighborhood Hits	276	Target Neighborhood Hits	372	Shared Neighborhood Hits	233
SwissProt Accessions	P80205	Gene names	Otx1, Otx-1
Domain Architecture
Description	Homeobox protein OTX1.

OTX2_HUMAN
θ value	θ > 10 (rank : 346)	NC score	0.211611 (rank : 285)
Query Neighborhood Hits	276	Target Neighborhood Hits	341	Shared Neighborhood Hits	227
SwissProt Accessions	P32243, Q6GTV3, Q9HAW3, Q9P2R1	Gene names	OTX2
Domain Architecture
Description	Homeobox protein OTX2.

OTX2_MOUSE
θ value	θ > 10 (rank : 347)	NC score	0.212639 (rank : 284)
Query Neighborhood Hits	276	Target Neighborhood Hits	345	Shared Neighborhood Hits	230
SwissProt Accessions	P80206	Gene names	Otx2, Otx-2
Domain Architecture
Description	Homeobox protein OTX2.

PEPP1_HUMAN
θ value	θ > 10 (rank : 348)	NC score	0.244554 (rank : 249)
Query Neighborhood Hits	276	Target Neighborhood Hits	338	Shared Neighborhood Hits	234
SwissProt Accessions	Q8NHV9, O95030, Q3SYE0	Gene names	PEPP1, OTEX
Domain Architecture
Description	Paired-like homeobox protein PEPP-1 (Ovary-, testis- and epididymis- expressed gene protein).

PEPP2_HUMAN
θ value	θ > 10 (rank : 349)	NC score	0.237767 (rank : 259)
Query Neighborhood Hits	276	Target Neighborhood Hits	316	Shared Neighborhood Hits	225
SwissProt Accessions	Q9BQY4, Q9BR00	Gene names	PEPP2, THG1
Domain Architecture
Description	Paired-like homeobox protein PEPP-2 (Testis homeobox gene 1).

PIT1_HUMAN
θ value	θ > 10 (rank : 350)	NC score	0.095107 (rank : 331)
Query Neighborhood Hits	276	Target Neighborhood Hits	292	Shared Neighborhood Hits	190
SwissProt Accessions	P28069, O75757, Q15132, Q15133, Q9UEL3	Gene names	POU1F1, GHF1, PIT1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

PIT1_MOUSE
θ value	θ > 10 (rank : 351)	NC score	0.099057 (rank : 329)
Query Neighborhood Hits	276	Target Neighborhood Hits	313	Shared Neighborhood Hits	207
SwissProt Accessions	Q00286	Gene names	Pou1f1, Pit-1, Pit1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

PO2F1_MOUSE
θ value	θ > 10 (rank : 352)	NC score	0.113387 (rank : 324)
Query Neighborhood Hits	276	Target Neighborhood Hits	408	Shared Neighborhood Hits	221
SwissProt Accessions	P25425, Q61994, Q63891, Q6Y681, Q7TSD0, Q8BT04, Q8K570, Q99JH0, Q9WTZ4, Q9WTZ5, Q9WTZ6	Gene names	Pou2f1, Oct-1, Otf-1, Otf1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

PO3F1_HUMAN
θ value	θ > 10 (rank : 353)	NC score	0.072254 (rank : 349)
Query Neighborhood Hits	276	Target Neighborhood Hits	256	Shared Neighborhood Hits	162
SwissProt Accessions	Q03052	Gene names	POU3F1, OCT6, OTF6
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

PO3F1_MOUSE
θ value	θ > 10 (rank : 354)	NC score	0.073047 (rank : 348)
Query Neighborhood Hits	276	Target Neighborhood Hits	261	Shared Neighborhood Hits	162
SwissProt Accessions	P21952	Gene names	Pou3f1, Oct6, Otf-6, Otf6, Scip
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

PO3F3_HUMAN
θ value	θ > 10 (rank : 355)	NC score	0.086779 (rank : 344)
Query Neighborhood Hits	276	Target Neighborhood Hits	311	Shared Neighborhood Hits	194
SwissProt Accessions	P20264, P78379	Gene names	POU3F3, BRN1, OTF8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

PO3F3_MOUSE
θ value	θ > 10 (rank : 356)	NC score	0.086782 (rank : 343)
Query Neighborhood Hits	276	Target Neighborhood Hits	308	Shared Neighborhood Hits	194
SwissProt Accessions	P31361	Gene names	Pou3f3, Brn-1, Brn1, Otf8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

PO3F4_HUMAN
θ value	θ > 10 (rank : 357)	NC score	0.069602 (rank : 350)
Query Neighborhood Hits	276	Target Neighborhood Hits	297	Shared Neighborhood Hits	167
SwissProt Accessions	P49335, Q5H9G9, Q99410	Gene names	POU3F4, BRN4, OTF9
Domain Architecture
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

PO3F4_MOUSE
θ value	θ > 10 (rank : 358)	NC score	0.068537 (rank : 351)
Query Neighborhood Hits	276	Target Neighborhood Hits	281	Shared Neighborhood Hits	166
SwissProt Accessions	P62515, P25216	Gene names	Pou3f4, Brn-4, Brn4, Otf9
Domain Architecture	No domain graphic available
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

PO4F1_HUMAN
θ value	θ > 10 (rank : 359)	NC score	0.087424 (rank : 341)
Query Neighborhood Hits	276	Target Neighborhood Hits	342	Shared Neighborhood Hits	209
SwissProt Accessions	Q01851, Q14986, Q15318	Gene names	POU4F1, BRN3A, RDC1
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Oct-T1) (Homeobox/POU domain protein RDC-1).

PO4F1_MOUSE
θ value	θ > 10 (rank : 360)	NC score	0.088386 (rank : 337)
Query Neighborhood Hits	276	Target Neighborhood Hits	345	Shared Neighborhood Hits	209
SwissProt Accessions	P17208	Gene names	Pou4f1, Brn-3, Brn3, Brn3a
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Brn-3.0).

PO4F2_HUMAN
θ value	θ > 10 (rank : 361)	NC score	0.088406 (rank : 335)
Query Neighborhood Hits	276	Target Neighborhood Hits	310	Shared Neighborhood Hits	207
SwissProt Accessions	Q12837, Q13883, Q14987	Gene names	POU4F2, BRN3B
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B).

PO4F2_MOUSE
θ value	θ > 10 (rank : 362)	NC score	0.088480 (rank : 333)
Query Neighborhood Hits	276	Target Neighborhood Hits	312	Shared Neighborhood Hits	207
SwissProt Accessions	Q63934, Q63954	Gene names	Pou4f2, Brn3b
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B) (Brn-3.2).

PO4F3_HUMAN
θ value	θ > 10 (rank : 363)	NC score	0.087841 (rank : 339)
Query Neighborhood Hits	276	Target Neighborhood Hits	307	Shared Neighborhood Hits	208
SwissProt Accessions	Q15319, O60557	Gene names	POU4F3, BRN3C
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

PO4F3_MOUSE
θ value	θ > 10 (rank : 364)	NC score	0.088089 (rank : 338)
Query Neighborhood Hits	276	Target Neighborhood Hits	311	Shared Neighborhood Hits	208
SwissProt Accessions	Q63955	Gene names	Pou4f3, Brn-3c, Brn3c
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

PO5F1_HUMAN
θ value	θ > 10 (rank : 365)	NC score	0.086803 (rank : 342)
Query Neighborhood Hits	276	Target Neighborhood Hits	321	Shared Neighborhood Hits	196
SwissProt Accessions	Q01860, P31359, Q15167, Q15168, Q16422	Gene names	POU5F1, OCT3, OCT4, OTF3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4).

PO5F1_MOUSE
θ value	θ > 10 (rank : 366)	NC score	0.083503 (rank : 345)
Query Neighborhood Hits	276	Target Neighborhood Hits	305	Shared Neighborhood Hits	186
SwissProt Accessions	P20263, Q63843	Gene names	Pou5f1, Oct-3, Oct-4, Otf-3, Otf3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4) (NF-A3).

PO6F2_HUMAN
θ value	θ > 10 (rank : 367)	NC score	0.157117 (rank : 297)
Query Neighborhood Hits	276	Target Neighborhood Hits	618	Shared Neighborhood Hits	220
SwissProt Accessions	P78424, P78425, Q75ME8, Q86UM6, Q9UDS7	Gene names	POU6F2, RPF1
Domain Architecture
Description	POU domain, class 6, transcription factor 2 (Retina-derived POU-domain factor 1) (RPF-1).

PRRX2_HUMAN
θ value	θ > 10 (rank : 368)	NC score	0.235558 (rank : 263)
Query Neighborhood Hits	276	Target Neighborhood Hits	348	Shared Neighborhood Hits	237
SwissProt Accessions	Q99811, Q9UIB3	Gene names	PRRX2, PMX2, PRX2
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Paired-related homeobox protein 2).

RHOX5_MOUSE
θ value	θ > 10 (rank : 369)	NC score	0.059014 (rank : 358)
Query Neighborhood Hits	276	Target Neighborhood Hits	69	Shared Neighborhood Hits	39
SwissProt Accessions	P52651	Gene names	Rhox5, Pem
Domain Architecture	No domain graphic available
Description	Homeobox protein Rhox5 (Reproductive homeobox on chromosome X 5) (Homeobox protein Pem) (Placenta and embryonic expression protein).

SHOX2_HUMAN
θ value	θ > 10 (rank : 370)	NC score	0.229689 (rank : 270)
Query Neighborhood Hits	276	Target Neighborhood Hits	353	Shared Neighborhood Hits	230
SwissProt Accessions	O60902, O60465, O60467, O60903	Gene names	SHOX2, OG12X, SHOT
Domain Architecture
Description	Short stature homeobox protein 2 (Paired-related homeobox protein SHOT) (Homeobox protein Og12X).

SHOX2_MOUSE
θ value	θ > 10 (rank : 371)	NC score	0.229906 (rank : 269)
Query Neighborhood Hits	276	Target Neighborhood Hits	348	Shared Neighborhood Hits	230
SwissProt Accessions	P70390, P70369	Gene names	Shox2, Og12x, Prx3
Domain Architecture
Description	Short stature homeobox protein 2 (Homeobox protein Og12X) (OG-12) (Paired family homeodomain protein Prx3).

SHOX_HUMAN
θ value	θ > 10 (rank : 372)	NC score	0.234648 (rank : 264)
Query Neighborhood Hits	276	Target Neighborhood Hits	363	Shared Neighborhood Hits	234
SwissProt Accessions	O15266, O00412, O00413, O15267	Gene names	SHOX, PHOG
Domain Architecture
Description	Short stature homeobox protein (Short stature homeobox-containing protein) (Pseudoautosomal homeobox-containing osteogenic protein).

VSX1_MOUSE
θ value	θ > 10 (rank : 373)	NC score	0.217654 (rank : 281)
Query Neighborhood Hits	276	Target Neighborhood Hits	356	Shared Neighborhood Hits	224
SwissProt Accessions	Q91V10	Gene names	Vsx1, Rinx
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

Hits sorted by NC score

IRX4_HUMAN
NC score	0.999962 (rank : 1)	θ value	0 (rank : 1)
Query Neighborhood Hits	276	Target Neighborhood Hits	276	Shared Neighborhood Hits	276
SwissProt Accessions	P78413, Q9UHR2	Gene names	IRX4, IRXA3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

IRX4_MOUSE
NC score	0.993446 (rank : 2)	θ value	0 (rank : 2)
Query Neighborhood Hits	276	Target Neighborhood Hits	286	Shared Neighborhood Hits	261
SwissProt Accessions	Q9QY61	Gene names	Irx4, Irxa3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

IRX6_HUMAN
NC score	0.952570 (rank : 3)	θ value	1.84601e-53 (rank : 4)
Query Neighborhood Hits	276	Target Neighborhood Hits	262	Shared Neighborhood Hits	238
SwissProt Accessions	P78412, Q7Z2K0	Gene names	IRX6, IRX7, IRXB3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

IRX6_MOUSE
NC score	0.950733 (rank : 4)	θ value	4.38363e-63 (rank : 3)
Query Neighborhood Hits	276	Target Neighborhood Hits	256	Shared Neighborhood Hits	232
SwissProt Accessions	Q9ER75	Gene names	Irx6, Irxb3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

IRX3_MOUSE
NC score	0.912875 (rank : 5)	θ value	1.01765e-35 (rank : 9)
Query Neighborhood Hits	276	Target Neighborhood Hits	303	Shared Neighborhood Hits	218
SwissProt Accessions	P81067	Gene names	Irx3, Irxb1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

IRX3_HUMAN
NC score	0.909784 (rank : 6)	θ value	1.46948e-34 (rank : 10)
Query Neighborhood Hits	276	Target Neighborhood Hits	342	Shared Neighborhood Hits	219
SwissProt Accessions	P78415, Q7Z4A4, Q7Z4A5, Q8IVC6	Gene names	IRX3, IRXB1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

IRX2_MOUSE
NC score	0.909687 (rank : 7)	θ value	1.57e-36 (rank : 8)
Query Neighborhood Hits	276	Target Neighborhood Hits	264	Shared Neighborhood Hits	215
SwissProt Accessions	P81066, O55121, Q9ERN1	Gene names	Irx2, Irxa2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

IRX1_MOUSE
NC score	0.907501 (rank : 8)	θ value	1.24399e-33 (rank : 11)
Query Neighborhood Hits	276	Target Neighborhood Hits	269	Shared Neighborhood Hits	220
SwissProt Accessions	P81068, O55120, Q9JLL6	Gene names	Irx1, Irxa1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

IRX1_HUMAN
NC score	0.906036 (rank : 9)	θ value	2.77131e-33 (rank : 12)
Query Neighborhood Hits	276	Target Neighborhood Hits	285	Shared Neighborhood Hits	221
SwissProt Accessions	P78414, Q7Z2F8, Q8N312	Gene names	IRX1, IRXA1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

IRX2_HUMAN
NC score	0.905142 (rank : 10)	θ value	5.21438e-40 (rank : 6)
Query Neighborhood Hits	276	Target Neighborhood Hits	358	Shared Neighborhood Hits	223
SwissProt Accessions	Q9BZI1, Q7Z2I7	Gene names	IRX2, IRXA2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

IRX5_MOUSE
NC score	0.900703 (rank : 11)	θ value	8.89434e-40 (rank : 7)
Query Neighborhood Hits	276	Target Neighborhood Hits	324	Shared Neighborhood Hits	217
SwissProt Accessions	Q9JKQ4, Q80WV4, Q9JLL5	Gene names	Irx5, Irxb2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2).

IRX5_HUMAN
NC score	0.900078 (rank : 12)	θ value	8.04462e-41 (rank : 5)
Query Neighborhood Hits	276	Target Neighborhood Hits	362	Shared Neighborhood Hits	218
SwissProt Accessions	P78411, P78416, Q7Z2E1	Gene names	IRX5, IRX2A, IRXB2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2) (IRX-2A).

TGIF_MOUSE
NC score	0.634040 (rank : 13)	θ value	3.64472e-09 (rank : 14)
Query Neighborhood Hits	276	Target Neighborhood Hits	125	Shared Neighborhood Hits	68
SwissProt Accessions	P70284, Q921F9, Q99JS3	Gene names	Tgif
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

TGIF_HUMAN
NC score	0.627949 (rank : 14)	θ value	2.79066e-09 (rank : 13)
Query Neighborhood Hits	276	Target Neighborhood Hits	109	Shared Neighborhood Hits	67
SwissProt Accessions	Q15583, Q6ICR0, Q8N5X9, Q9NRS0	Gene names	TGIF
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

TF2LX_HUMAN
NC score	0.626842 (rank : 15)	θ value	2.61198e-07 (rank : 21)
Query Neighborhood Hits	276	Target Neighborhood Hits	108	Shared Neighborhood Hits	74
SwissProt Accessions	Q8IUE1	Gene names	TGIF2LX, TGIFLX
Domain Architecture
Description	Homeobox protein TGIF2LX (TGFB-induced factor 2-like protein, X- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the X).

TF2LY_HUMAN
NC score	0.624620 (rank : 16)	θ value	7.59969e-07 (rank : 26)
Query Neighborhood Hits	276	Target Neighborhood Hits	90	Shared Neighborhood Hits	67
SwissProt Accessions	Q8IUE0	Gene names	TGIF2LY, TGIFLY
Domain Architecture
Description	Homeobox protein TGIF2LY (TGFB-induced factor 2-like protein, Y- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the Y).

TGIF2_HUMAN
NC score	0.617275 (rank : 17)	θ value	1.17247e-07 (rank : 19)
Query Neighborhood Hits	276	Target Neighborhood Hits	94	Shared Neighborhood Hits	68
SwissProt Accessions	Q9GZN2	Gene names	TGIF2
Domain Architecture
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

TGIF2_MOUSE
NC score	0.614797 (rank : 18)	θ value	1.17247e-07 (rank : 20)
Query Neighborhood Hits	276	Target Neighborhood Hits	127	Shared Neighborhood Hits	73
SwissProt Accessions	Q8C0Y1	Gene names	Tgif2
Domain Architecture	No domain graphic available
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

PKNX1_MOUSE
NC score	0.578405 (rank : 19)	θ value	5.26297e-08 (rank : 18)
Query Neighborhood Hits	276	Target Neighborhood Hits	103	Shared Neighborhood Hits	79
SwissProt Accessions	O70477	Gene names	Pknox1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1).

PKNX1_HUMAN
NC score	0.575351 (rank : 20)	θ value	5.26297e-08 (rank : 17)
Query Neighborhood Hits	276	Target Neighborhood Hits	101	Shared Neighborhood Hits	78
SwissProt Accessions	P55347, O00528, Q8IWT7	Gene names	PKNOX1, PREP1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1) (Homeobox protein PREP-1).

PKNX2_HUMAN
NC score	0.570422 (rank : 21)	θ value	1.80886e-08 (rank : 15)
Query Neighborhood Hits	276	Target Neighborhood Hits	133	Shared Neighborhood Hits	89
SwissProt Accessions	Q96KN3, Q63HL6, Q86XD1	Gene names	PKNOX2, PREP2
Domain Architecture
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

PKNX2_MOUSE
NC score	0.565026 (rank : 22)	θ value	1.80886e-08 (rank : 16)
Query Neighborhood Hits	276	Target Neighborhood Hits	197	Shared Neighborhood Hits	91
SwissProt Accessions	Q8BG99, Q8R4B0	Gene names	Pknox2, Prep2
Domain Architecture	No domain graphic available
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

PBX4_MOUSE
NC score	0.552584 (rank : 23)	θ value	2.21117e-06 (rank : 33)
Query Neighborhood Hits	276	Target Neighborhood Hits	324	Shared Neighborhood Hits	230
SwissProt Accessions	Q99NE9, Q8CFL2, Q99NE8	Gene names	Pbx4
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 4 (Homeobox protein PBX4).

MEIS3_HUMAN
NC score	0.545282 (rank : 24)	θ value	4.45536e-07 (rank : 22)
Query Neighborhood Hits	276	Target Neighborhood Hits	118	Shared Neighborhood Hits	78
SwissProt Accessions	Q99687, Q6NT73, Q8TC66, Q9NPW2	Gene names	MEIS3, MRG2
Domain Architecture	No domain graphic available
Description	Homeobox protein Meis3 (Meis1-related protein 2).

MEIS3_MOUSE
NC score	0.543696 (rank : 25)	θ value	4.45536e-07 (rank : 23)
Query Neighborhood Hits	276	Target Neighborhood Hits	118	Shared Neighborhood Hits	81
SwissProt Accessions	P97368, Q99L81	Gene names	Meis3, Mrg2
Domain Architecture
Description	Homeobox protein Meis3 (Meis1-related protein 2).

PBX2_MOUSE
NC score	0.538669 (rank : 26)	θ value	1.69304e-06 (rank : 32)
Query Neighborhood Hits	276	Target Neighborhood Hits	341	Shared Neighborhood Hits	230
SwissProt Accessions	O35984	Gene names	Pbx2
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2).

PBX2_HUMAN
NC score	0.538611 (rank : 27)	θ value	1.69304e-06 (rank : 31)
Query Neighborhood Hits	276	Target Neighborhood Hits	350	Shared Neighborhood Hits	230
SwissProt Accessions	P40425	Gene names	PBX2, G17
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2) (Protein G17).

PBX3_MOUSE
NC score	0.537990 (rank : 28)	θ value	1.29631e-06 (rank : 30)
Query Neighborhood Hits	276	Target Neighborhood Hits	306	Shared Neighborhood Hits	233
SwissProt Accessions	O35317, Q925W2	Gene names	Pbx3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX3_HUMAN
NC score	0.537951 (rank : 29)	θ value	1.29631e-06 (rank : 29)
Query Neighborhood Hits	276	Target Neighborhood Hits	306	Shared Neighborhood Hits	233
SwissProt Accessions	P40426, Q96PF9, Q96PG0	Gene names	PBX3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

MEIS1_MOUSE
NC score	0.533138 (rank : 30)	θ value	5.81887e-07 (rank : 25)
Query Neighborhood Hits	276	Target Neighborhood Hits	115	Shared Neighborhood Hits	81
SwissProt Accessions	Q60954, Q5SVC8, Q60955, Q8CIL0	Gene names	Meis1
Domain Architecture
Description	Homeobox protein Meis1 (Myeloid ecotropic viral integration site 1).

MEIS1_HUMAN
NC score	0.533136 (rank : 31)	θ value	5.81887e-07 (rank : 24)
Query Neighborhood Hits	276	Target Neighborhood Hits	115	Shared Neighborhood Hits	81
SwissProt Accessions	O00470	Gene names	MEIS1
Domain Architecture
Description	Homeobox protein Meis1.

PBX1_HUMAN
NC score	0.527404 (rank : 32)	θ value	2.88788e-06 (rank : 34)
Query Neighborhood Hits	276	Target Neighborhood Hits	317	Shared Neighborhood Hits	226
SwissProt Accessions	P40424	Gene names	PBX1, PRL
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1) (Homeobox protein PRL).

PBX1_MOUSE
NC score	0.527404 (rank : 33)	θ value	2.88788e-06 (rank : 35)
Query Neighborhood Hits	276	Target Neighborhood Hits	317	Shared Neighborhood Hits	226
SwissProt Accessions	P41778	Gene names	Pbx1, Pbx-1
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1).

MEIS2_HUMAN
NC score	0.524086 (rank : 34)	θ value	1.29631e-06 (rank : 27)
Query Neighborhood Hits	276	Target Neighborhood Hits	182	Shared Neighborhood Hits	88
SwissProt Accessions	O14770, Q96KI4, Q96KI5, Q9NRS1, Q9NRS2, Q9NRS3	Gene names	MEIS2, MRG1
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

MEIS2_MOUSE
NC score	0.521915 (rank : 35)	θ value	1.29631e-06 (rank : 28)
Query Neighborhood Hits	276	Target Neighborhood Hits	208	Shared Neighborhood Hits	88
SwissProt Accessions	P97367, O35676, O35677, P97403, P97404	Gene names	Meis2, Mrg1, Stra10
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

SIX2_MOUSE
NC score	0.459169 (rank : 36)	θ value	0.000786445 (rank : 46)
Query Neighborhood Hits	276	Target Neighborhood Hits	376	Shared Neighborhood Hits	249
SwissProt Accessions	Q62232, P70179	Gene names	Six2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

SIX2_HUMAN
NC score	0.452658 (rank : 37)	θ value	0.000786445 (rank : 45)
Query Neighborhood Hits	276	Target Neighborhood Hits	345	Shared Neighborhood Hits	231
SwissProt Accessions	Q9NPC8, Q9BXH7	Gene names	SIX2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

SIX4_MOUSE
NC score	0.444381 (rank : 38)	θ value	4.1701e-05 (rank : 37)
Query Neighborhood Hits	276	Target Neighborhood Hits	341	Shared Neighborhood Hits	231
SwissProt Accessions	Q61321, Q61322, Q61323	Gene names	Six4, Arec3
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4) (Skeletal muscle-specific ARE-binding protein AREC3).

SIX1_MOUSE
NC score	0.439717 (rank : 39)	θ value	0.00228821 (rank : 50)
Query Neighborhood Hits	276	Target Neighborhood Hits	341	Shared Neighborhood Hits	242
SwissProt Accessions	Q62231, Q8CIL7	Gene names	Six1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

SIX1_HUMAN
NC score	0.439455 (rank : 40)	θ value	0.00228821 (rank : 49)
Query Neighborhood Hits	276	Target Neighborhood Hits	343	Shared Neighborhood Hits	242
SwissProt Accessions	Q15475, Q96H64	Gene names	SIX1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

SIX4_HUMAN
NC score	0.431284 (rank : 41)	θ value	0.000158464 (rank : 39)
Query Neighborhood Hits	276	Target Neighborhood Hits	342	Shared Neighborhood Hits	226
SwissProt Accessions	Q9UIU6	Gene names	SIX4
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4).

SIX5_HUMAN
NC score	0.423066 (rank : 42)	θ value	0.00020696 (rank : 40)
Query Neighborhood Hits	276	Target Neighborhood Hits	386	Shared Neighborhood Hits	196
SwissProt Accessions	Q8N196	Gene names	SIX5, DMAHP
Domain Architecture	No domain graphic available
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein).

SIX5_MOUSE
NC score	0.400578 (rank : 43)	θ value	0.000602161 (rank : 44)
Query Neighborhood Hits	276	Target Neighborhood Hits	354	Shared Neighborhood Hits	170
SwissProt Accessions	P70178	Gene names	Six5, Dmahp
Domain Architecture
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein homolog).

SIX3_HUMAN
NC score	0.388801 (rank : 44)	θ value	0.00509761 (rank : 53)
Query Neighborhood Hits	276	Target Neighborhood Hits	285	Shared Neighborhood Hits	211
SwissProt Accessions	O95343	Gene names	SIX3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX3_MOUSE
NC score	0.388748 (rank : 45)	θ value	0.00509761 (rank : 54)
Query Neighborhood Hits	276	Target Neighborhood Hits	289	Shared Neighborhood Hits	211
SwissProt Accessions	Q62233, P70176, P70177	Gene names	Six3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX6_MOUSE
NC score	0.383840 (rank : 46)	θ value	0.0193708 (rank : 60)
Query Neighborhood Hits	276	Target Neighborhood Hits	267	Shared Neighborhood Hits	196
SwissProt Accessions	Q9QZ28, O88423	Gene names	Six6, Optx2, Six9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Six9 protein).

SIX6_HUMAN
NC score	0.383650 (rank : 47)	θ value	0.0193708 (rank : 59)
Query Neighborhood Hits	276	Target Neighborhood Hits	269	Shared Neighborhood Hits	198
SwissProt Accessions	O95475, Q9P1X8	Gene names	SIX6, OPTX2, SIX9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Homeodomain protein OPTX2).

HXD8_MOUSE
NC score	0.360977 (rank : 48)	θ value	0.00134147 (rank : 47)
Query Neighborhood Hits	276	Target Neighborhood Hits	333	Shared Neighborhood Hits	237
SwissProt Accessions	P23463	Gene names	Hoxd8, Hox-4.3, Hoxd-8
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4).

HXD8_HUMAN
NC score	0.356584 (rank : 49)	θ value	0.0431538 (rank : 66)
Query Neighborhood Hits	276	Target Neighborhood Hits	338	Shared Neighborhood Hits	237
SwissProt Accessions	P13378	Gene names	HOXD8, HOX4E
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4).

HXB8_HUMAN
NC score	0.355908 (rank : 50)	θ value	0.000461057 (rank : 41)
Query Neighborhood Hits	276	Target Neighborhood Hits	324	Shared Neighborhood Hits	236
SwissProt Accessions	P17481, Q9H1I2	Gene names	HOXB8, HOX2D
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4).

HXA7_MOUSE
NC score	0.355037 (rank : 51)	θ value	0.00390308 (rank : 52)
Query Neighborhood Hits	276	Target Neighborhood Hits	318	Shared Neighborhood Hits	232
SwissProt Accessions	P02830, Q544P0	Gene names	Hoxa7, Hox-1.1, Hoxa-7
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1.1) (M6-12) (M6).

HXB7_MOUSE
NC score	0.355018 (rank : 52)	θ value	5.44631e-05 (rank : 38)
Query Neighborhood Hits	276	Target Neighborhood Hits	314	Shared Neighborhood Hits	231
SwissProt Accessions	P09024, Q3UW15	Gene names	Hoxb7, Hox-2.3, Hoxb-7
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2.3) (MUB1) (Homeobox protein MH-22B).

HXB8_MOUSE
NC score	0.354773 (rank : 53)	θ value	0.000461057 (rank : 42)
Query Neighborhood Hits	276	Target Neighborhood Hits	325	Shared Neighborhood Hits	237
SwissProt Accessions	P09632	Gene names	Hoxb8, Hox-2.4, Hoxb-8
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2.4).

BSH_MOUSE
NC score	0.349218 (rank : 54)	θ value	0.00298849 (rank : 51)
Query Neighborhood Hits	276	Target Neighborhood Hits	349	Shared Neighborhood Hits	243
SwissProt Accessions	Q810B3	Gene names	Bsx
Domain Architecture	No domain graphic available
Description	Brain-specific homeobox protein homolog.

HXB7_HUMAN
NC score	0.348959 (rank : 55)	θ value	4.1701e-05 (rank : 36)
Query Neighborhood Hits	276	Target Neighborhood Hits	311	Shared Neighborhood Hits	231
SwissProt Accessions	P09629, Q15957	Gene names	HOXB7, HOX2C
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2C) (HHO.C1).

HXA6_HUMAN
NC score	0.348368 (rank : 56)	θ value	0.000602161 (rank : 43)
Query Neighborhood Hits	276	Target Neighborhood Hits	309	Shared Neighborhood Hits	235
SwissProt Accessions	P31267, Q9UPM0	Gene names	HOXA6, HOX1B
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A6 (Hox-1B).

HXC8_HUMAN
NC score	0.348325 (rank : 57)	θ value	0.0736092 (rank : 78)
Query Neighborhood Hits	276	Target Neighborhood Hits	327	Shared Neighborhood Hits	241
SwissProt Accessions	P31273, O15221, O15362	Gene names	HOXC8, HOX3A
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3A).

HXC8_MOUSE
NC score	0.348305 (rank : 58)	θ value	0.0736092 (rank : 79)
Query Neighborhood Hits	276	Target Neighborhood Hits	327	Shared Neighborhood Hits	241
SwissProt Accessions	P09025	Gene names	Hoxc8, Hox-3.1, Hoxc-8
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3.1) (M31).

HXA1_MOUSE
NC score	0.340536 (rank : 59)	θ value	0.0563607 (rank : 70)
Query Neighborhood Hits	276	Target Neighborhood Hits	341	Shared Neighborhood Hits	241
SwissProt Accessions	P09022, P15463	Gene names	Hoxa1, Era-1, Hox-1.6, Hoxa-1
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399).

HXA6_MOUSE
NC score	0.340293 (rank : 60)	θ value	0.0563607 (rank : 71)
Query Neighborhood Hits	276	Target Neighborhood Hits	304	Shared Neighborhood Hits	231
SwissProt Accessions	P09092, Q9JI98	Gene names	Hoxa6, Hox-1.2, Hoxa-6
Domain Architecture
Description	Homeobox protein Hox-A6 (Hox-1.2) (M5-4).

HXA1_HUMAN
NC score	0.340000 (rank : 61)	θ value	0.0563607 (rank : 69)
Query Neighborhood Hits	276	Target Neighborhood Hits	334	Shared Neighborhood Hits	239
SwissProt Accessions	P49639, O43363	Gene names	HOXA1, HOX1F
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1F).

HXA7_HUMAN
NC score	0.339559 (rank : 62)	θ value	0.00228821 (rank : 48)
Query Neighborhood Hits	276	Target Neighborhood Hits	309	Shared Neighborhood Hits	230
SwissProt Accessions	P31268, O43368, O43486, O95655, Q9NSC8, Q9UDM1	Gene names	HOXA7, HOX1A
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1).

NKX61_MOUSE
NC score	0.339391 (rank : 63)	θ value	0.0252991 (rank : 61)
Query Neighborhood Hits	276	Target Neighborhood Hits	439	Shared Neighborhood Hits	247
SwissProt Accessions	Q99MA9, Q9ERQ7	Gene names	Nkx6-1, Nkx6.1, Nkx6a
Domain Architecture
Description	Homeobox protein Nkx-6.1.

NKX61_HUMAN
NC score	0.336746 (rank : 64)	θ value	0.0113563 (rank : 55)
Query Neighborhood Hits	276	Target Neighborhood Hits	431	Shared Neighborhood Hits	247
SwissProt Accessions	P78426	Gene names	NKX6-1, NKX6A
Domain Architecture
Description	Homeobox protein Nkx-6.1.

HXB6_HUMAN
NC score	0.330390 (rank : 65)	θ value	0.0961366 (rank : 82)
Query Neighborhood Hits	276	Target Neighborhood Hits	307	Shared Neighborhood Hits	231
SwissProt Accessions	P17509, P09068, Q9HB11, Q9UGH2	Gene names	HOXB6, HOX2B
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2).

HXB6_MOUSE
NC score	0.329903 (rank : 66)	θ value	0.0961366 (rank : 83)
Query Neighborhood Hits	276	Target Neighborhood Hits	309	Shared Neighborhood Hits	231
SwissProt Accessions	P09023	Gene names	Hoxb6, Hox-2.2, Hoxb-6
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2.2) (Homeobox protein MH-22A).

NKX12_MOUSE
NC score	0.323067 (rank : 67)	θ value	0.0563607 (rank : 74)
Query Neighborhood Hits	276	Target Neighborhood Hits	332	Shared Neighborhood Hits	234
SwissProt Accessions	P42580, Q9JHF2, Q9JKW5, Q9JKW6, Q9JKW9, Q9JKX0, Q9JKX1	Gene names	Nkx1-2, Nkx1.1, Sax1
Domain Architecture
Description	NK1 transcription factor-related protein 2 (Homeobox protein SAX-1) (NKX-1.1).

HXC6_HUMAN
NC score	0.317723 (rank : 68)	θ value	0.125558 (rank : 87)
Query Neighborhood Hits	276	Target Neighborhood Hits	306	Shared Neighborhood Hits	233
SwissProt Accessions	P09630	Gene names	HOXC6, HOX3C
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3C) (HHO.C8) (CP25).

HXC6_MOUSE
NC score	0.317723 (rank : 69)	θ value	0.125558 (rank : 88)
Query Neighborhood Hits	276	Target Neighborhood Hits	306	Shared Neighborhood Hits	233
SwissProt Accessions	P10629, Q61683	Gene names	Hoxc6, Hox-3.3, Hoxc-6
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3.3) (Hox-6.1).

DLX5_MOUSE
NC score	0.317391 (rank : 70)	θ value	0.279714 (rank : 99)
Query Neighborhood Hits	276	Target Neighborhood Hits	434	Shared Neighborhood Hits	247
SwissProt Accessions	P70396, O54876, O54877, O54878, Q9JJ45	Gene names	Dlx5
Domain Architecture
Description	Homeobox protein DLX-5.

HXD1_MOUSE
NC score	0.316399 (rank : 71)	θ value	0.47712 (rank : 117)
Query Neighborhood Hits	276	Target Neighborhood Hits	381	Shared Neighborhood Hits	239
SwissProt Accessions	Q01822	Gene names	Hoxd1, Hox-4.9, Hoxd-1
Domain Architecture
Description	Homeobox protein Hox-D1 (Hox-4.9).

HXD1_HUMAN
NC score	0.316305 (rank : 72)	θ value	0.813845 (rank : 137)
Query Neighborhood Hits	276	Target Neighborhood Hits	337	Shared Neighborhood Hits	237
SwissProt Accessions	Q9GZZ0	Gene names	HOXD1
Domain Architecture
Description	Homeobox protein Hox-D1.

PITX2_HUMAN
NC score	0.315358 (rank : 73)	θ value	0.279714 (rank : 110)
Query Neighborhood Hits	276	Target Neighborhood Hits	381	Shared Neighborhood Hits	252
SwissProt Accessions	Q99697, O60578, O60579, O60580, Q9BY17	Gene names	PITX2, ARP1, RGS, RIEG, RIEG1
Domain Architecture
Description	Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription factor) (Solurshin) (ALL1-responsive protein ARP1).

HXB1_HUMAN
NC score	0.314764 (rank : 74)	θ value	0.0961366 (rank : 80)
Query Neighborhood Hits	276	Target Neighborhood Hits	356	Shared Neighborhood Hits	241
SwissProt Accessions	P14653	Gene names	HOXB1, HOX2I
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2I).

PITX2_MOUSE
NC score	0.314721 (rank : 75)	θ value	0.279714 (rank : 111)
Query Neighborhood Hits	276	Target Neighborhood Hits	383	Shared Neighborhood Hits	252
SwissProt Accessions	P97474, O08646, O70336, P97933, Q9JLA0, Q9QXB8, Q9R1V9, Q9Z141	Gene names	Pitx2, Arp1, Brx1, Otlx2, Ptx2, Rgs
Domain Architecture
Description	Pituitary homeobox 2 (Orthodenticle-like homeobox 2) (Solurshin) (ALL1-responsive protein ARP1) (BRX1 homeoprotein) (Paired-like homeodomain transcription factor Munc 30).

HXB1_MOUSE
NC score	0.314301 (rank : 76)	θ value	0.365318 (rank : 112)
Query Neighborhood Hits	276	Target Neighborhood Hits	341	Shared Neighborhood Hits	241
SwissProt Accessions	P17919, Q3ZAY6, Q9CYH3	Gene names	Hoxb1, Hox-2.9, Hoxb-1
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2.9).

PITX3_MOUSE
NC score	0.314016 (rank : 77)	θ value	0.0252991 (rank : 64)
Query Neighborhood Hits	276	Target Neighborhood Hits	380	Shared Neighborhood Hits	254
SwissProt Accessions	O35160	Gene names	Pitx3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

PITX3_HUMAN
NC score	0.312505 (rank : 78)	θ value	0.0252991 (rank : 63)
Query Neighborhood Hits	276	Target Neighborhood Hits	366	Shared Neighborhood Hits	253
SwissProt Accessions	O75364	Gene names	PITX3, PTX3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

EMX2_MOUSE
NC score	0.311841 (rank : 79)	θ value	1.06291 (rank : 145)
Query Neighborhood Hits	276	Target Neighborhood Hits	340	Shared Neighborhood Hits	248
SwissProt Accessions	Q04744, Q80UE7	Gene names	Emx2, Emx-2
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

EMX2_HUMAN
NC score	0.310991 (rank : 80)	θ value	1.06291 (rank : 144)
Query Neighborhood Hits	276	Target Neighborhood Hits	341	Shared Neighborhood Hits	248
SwissProt Accessions	Q04743, Q96NN8, Q9BQF4	Gene names	EMX2
Domain Architecture
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

DLX1_HUMAN
NC score	0.310806 (rank : 81)	θ value	1.38821 (rank : 169)
Query Neighborhood Hits	276	Target Neighborhood Hits	343	Shared Neighborhood Hits	247
SwissProt Accessions	P56177, Q53ZU4, Q8IYB2	Gene names	DLX1
Domain Architecture
Description	Homeobox protein DLX-1.

DLX1_MOUSE
NC score	0.310751 (rank : 82)	θ value	1.38821 (rank : 170)
Query Neighborhood Hits	276	Target Neighborhood Hits	343	Shared Neighborhood Hits	247
SwissProt Accessions	Q64317	Gene names	Dlx1
Domain Architecture
Description	Homeobox protein DLX-1.

HLXB9_HUMAN
NC score	0.310079 (rank : 83)	θ value	0.813845 (rank : 130)
Query Neighborhood Hits	276	Target Neighborhood Hits	336	Shared Neighborhood Hits	239
SwissProt Accessions	P50219, Q9Y648	Gene names	HLXB9
Domain Architecture
Description	Homeobox protein HB9.

GSH2_HUMAN
NC score	0.309873 (rank : 84)	θ value	0.0193708 (rank : 58)
Query Neighborhood Hits	276	Target Neighborhood Hits	324	Shared Neighborhood Hits	234
SwissProt Accessions	Q9BZM3	Gene names	GSH2
Domain Architecture
Description	Homeobox protein GSH-2.

GSH2_MOUSE
NC score	0.309287 (rank : 85)	θ value	0.0431538 (rank : 65)
Query Neighborhood Hits	276	Target Neighborhood Hits	319	Shared Neighborhood Hits	233
SwissProt Accessions	P31316	Gene names	Gsh2, Gsh-2
Domain Architecture
Description	Homeobox protein GSH-2.

IPF1_MOUSE
NC score	0.308105 (rank : 86)	θ value	0.279714 (rank : 104)
Query Neighborhood Hits	276	Target Neighborhood Hits	340	Shared Neighborhood Hits	237
SwissProt Accessions	P52946	Gene names	Ipf1, Pdx1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Islet/duodenum homeobox 1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Pancreas/duodenum homeobox 1).

DLX6_HUMAN
NC score	0.306582 (rank : 87)	θ value	1.81305 (rank : 174)
Query Neighborhood Hits	276	Target Neighborhood Hits	341	Shared Neighborhood Hits	250
SwissProt Accessions	P56179, Q3ZAR6, Q9UPL2	Gene names	DLX6
Domain Architecture
Description	Homeobox protein DLX-6.

PITX1_MOUSE
NC score	0.306037 (rank : 88)	θ value	0.279714 (rank : 109)
Query Neighborhood Hits	276	Target Neighborhood Hits	362	Shared Neighborhood Hits	250
SwissProt Accessions	P70314, O54742, P70427	Gene names	Pitx1, Bft, Potx, Ptx1
Domain Architecture
Description	Pituitary homeobox 1 (Homeobox protein P-OTX) (Pituitary OTX-related factor) (Hindlimb expressed homeobox protein backfoot) (Ptx1).

HXA4_MOUSE
NC score	0.305713 (rank : 89)	θ value	0.62314 (rank : 128)
Query Neighborhood Hits	276	Target Neighborhood Hits	379	Shared Neighborhood Hits	237
SwissProt Accessions	P06798, Q61684, Q64388, Q8BPE6	Gene names	Hoxa4, Hox-1.4, Hoxa-4
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1.4) (Homeobox protein MH-3).

PITX1_HUMAN
NC score	0.305454 (rank : 90)	θ value	0.0961366 (rank : 84)
Query Neighborhood Hits	276	Target Neighborhood Hits	353	Shared Neighborhood Hits	246
SwissProt Accessions	P78337, O14677, O60425, Q9BTI5	Gene names	PITX1, BFT, PTX1
Domain Architecture
Description	Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot).

DLX5_HUMAN
NC score	0.304410 (rank : 91)	θ value	0.279714 (rank : 98)
Query Neighborhood Hits	276	Target Neighborhood Hits	405	Shared Neighborhood Hits	247
SwissProt Accessions	P56178, Q9UPL1	Gene names	DLX5
Domain Architecture
Description	Homeobox protein DLX-5.

IPF1_HUMAN
NC score	0.304130 (rank : 92)	θ value	0.813845 (rank : 138)
Query Neighborhood Hits	276	Target Neighborhood Hits	330	Shared Neighborhood Hits	235
SwissProt Accessions	P52945, O60594	Gene names	IPF1, PDX1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Pancreas/duodenum homeobox 1) (PDX- 1) (Islet/duodenum homeobox-1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Insulin upstream factor 1) (IUF-1) (Glucose- sensitive factor) (GSF).

HXC9_MOUSE
NC score	0.304112 (rank : 93)	θ value	0.163984 (rank : 92)
Query Neighborhood Hits	276	Target Neighborhood Hits	338	Shared Neighborhood Hits	239
SwissProt Accessions	P09633	Gene names	Hoxc9, Hox-3.2, Hoxc-9
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3.2).

HXC9_HUMAN
NC score	0.304023 (rank : 94)	θ value	0.163984 (rank : 91)
Query Neighborhood Hits	276	Target Neighborhood Hits	339	Shared Neighborhood Hits	239
SwissProt Accessions	P31274, Q9H1I0	Gene names	HOXC9, HOX3B
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3B).

HLXB9_MOUSE
NC score	0.303239 (rank : 95)	θ value	0.813845 (rank : 131)
Query Neighborhood Hits	276	Target Neighborhood Hits	354	Shared Neighborhood Hits	240
SwissProt Accessions	Q9QZW9	Gene names	Hlxb9
Domain Architecture
Description	Homeobox protein HB9.

HXA9_MOUSE
NC score	0.303119 (rank : 96)	θ value	0.279714 (rank : 101)
Query Neighborhood Hits	276	Target Neighborhood Hits	334	Shared Neighborhood Hits	241
SwissProt Accessions	P09631, O70154, O70155	Gene names	Hoxa9, Hox-1.7, Hoxa-9
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1.7).

HXA9_HUMAN
NC score	0.302834 (rank : 97)	θ value	0.279714 (rank : 100)
Query Neighborhood Hits	276	Target Neighborhood Hits	332	Shared Neighborhood Hits	241
SwissProt Accessions	P31269, O43369, O43429, Q99820	Gene names	HOXA9, HOX1G
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1G).

HXA5_HUMAN
NC score	0.302359 (rank : 98)	θ value	0.125558 (rank : 85)
Query Neighborhood Hits	276	Target Neighborhood Hits	336	Shared Neighborhood Hits	232
SwissProt Accessions	P20719, O43367, Q96CY6	Gene names	HOXA5, HOX1C
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1C).

DLX3_HUMAN
NC score	0.302198 (rank : 99)	θ value	1.38821 (rank : 171)
Query Neighborhood Hits	276	Target Neighborhood Hits	369	Shared Neighborhood Hits	246
SwissProt Accessions	O60479	Gene names	DLX3
Domain Architecture
Description	Homeobox protein DLX-3.

HXA5_MOUSE
NC score	0.302128 (rank : 100)	θ value	0.125558 (rank : 86)
Query Neighborhood Hits	276	Target Neighborhood Hits	338	Shared Neighborhood Hits	231
SwissProt Accessions	P09021, Q91VQ5	Gene names	Hoxa5, Hox-1.3, Hoxa-5
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1.3) (M2).

DLX2_HUMAN
NC score	0.301482 (rank : 101)	θ value	0.62314 (rank : 124)
Query Neighborhood Hits	276	Target Neighborhood Hits	355	Shared Neighborhood Hits	245
SwissProt Accessions	Q07687	Gene names	DLX2
Domain Architecture
Description	Homeobox protein DLX-2.

DLX2_MOUSE
NC score	0.300948 (rank : 102)	θ value	0.62314 (rank : 125)
Query Neighborhood Hits	276	Target Neighborhood Hits	352	Shared Neighborhood Hits	245
SwissProt Accessions	P40764	Gene names	Dlx2, Tes-1, Tes1
Domain Architecture
Description	Homeobox protein DLX-2 (Homeobox protein TES-1).

HXA4_HUMAN
NC score	0.300894 (rank : 103)	θ value	0.62314 (rank : 127)
Query Neighborhood Hits	276	Target Neighborhood Hits	370	Shared Neighborhood Hits	236
SwissProt Accessions	Q00056, O43366	Gene names	HOXA4, HOX1D
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4).

HXD4_HUMAN
NC score	0.298832 (rank : 104)	θ value	1.06291 (rank : 157)
Query Neighborhood Hits	276	Target Neighborhood Hits	337	Shared Neighborhood Hits	229
SwissProt Accessions	P09016, Q96AU0	Gene names	HOXD4, HOX4B
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4B) (Hox-5.1) (HHO.C13).

DLX3_MOUSE
NC score	0.298635 (rank : 105)	θ value	0.62314 (rank : 126)
Query Neighborhood Hits	276	Target Neighborhood Hits	367	Shared Neighborhood Hits	246
SwissProt Accessions	Q64205	Gene names	Dlx3
Domain Architecture
Description	Homeobox protein DLX-3.

HXB5_HUMAN
NC score	0.298061 (rank : 106)	θ value	0.365318 (rank : 113)
Query Neighborhood Hits	276	Target Neighborhood Hits	332	Shared Neighborhood Hits	231
SwissProt Accessions	P09067, P09069	Gene names	HOXB5, HOX2A
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2A) (HHO.C10) (HU-1).

NKX28_HUMAN
NC score	0.298056 (rank : 107)	θ value	1.06291 (rank : 160)
Query Neighborhood Hits	276	Target Neighborhood Hits	352	Shared Neighborhood Hits	251
SwissProt Accessions	O15522	Gene names	NKX2-8, NKX-2.8, NKX2G, NKX2H
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H).

HMX2_MOUSE
NC score	0.297964 (rank : 108)	θ value	1.06291 (rank : 146)
Query Neighborhood Hits	276	Target Neighborhood Hits	354	Shared Neighborhood Hits	243
SwissProt Accessions	P43687, Q8R1Q2	Gene names	Hmx2, Nkx-5.2, Nkx5-2
Domain Architecture
Description	Homeobox protein HMX2 (Homeobox protein Nkx-5.2).

HXD9_HUMAN
NC score	0.297945 (rank : 109)	θ value	0.279714 (rank : 102)
Query Neighborhood Hits	276	Target Neighborhood Hits	352	Shared Neighborhood Hits	239
SwissProt Accessions	P28356	Gene names	HOXD9, HOX4C
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2).

HXB5_MOUSE
NC score	0.297747 (rank : 110)	θ value	0.365318 (rank : 114)
Query Neighborhood Hits	276	Target Neighborhood Hits	337	Shared Neighborhood Hits	232
SwissProt Accessions	P09079, Q3ZAY8	Gene names	Hoxb5, Hox-2.1, Hoxb-5
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2.1) (MU-1) (H24.1).

NKX28_MOUSE
NC score	0.296952 (rank : 111)	θ value	1.06291 (rank : 161)
Query Neighborhood Hits	276	Target Neighborhood Hits	347	Shared Neighborhood Hits	249
SwissProt Accessions	O70584	Gene names	Nkx2-8, Nkx-2.9, Nkx2-9, Nkx2h
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H) (Homeobox protein Nkx-2.9).

HXD4_MOUSE
NC score	0.296919 (rank : 112)	θ value	1.06291 (rank : 158)
Query Neighborhood Hits	276	Target Neighborhood Hits	339	Shared Neighborhood Hits	227
SwissProt Accessions	P10628, P97451, Q3UXL6	Gene names	Hoxd4, Hox-4.2, Hoxd-4
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4.2) (Hox-5.1).

HXB4_HUMAN
NC score	0.296884 (rank : 113)	θ value	1.06291 (rank : 151)
Query Neighborhood Hits	276	Target Neighborhood Hits	376	Shared Neighborhood Hits	235
SwissProt Accessions	P17483, Q9NTA0	Gene names	HOXB4, HOX2F
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2F) (Hox-2.6).

HXD9_MOUSE
NC score	0.296200 (rank : 114)	θ value	0.279714 (rank : 103)
Query Neighborhood Hits	276	Target Neighborhood Hits	359	Shared Neighborhood Hits	239
SwissProt Accessions	P28357, Q3UYS2	Gene names	Hoxd9, Hox-4.4, Hoxd-9
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4.4) (Hox-5.2).

HHEX_HUMAN
NC score	0.296151 (rank : 115)	θ value	4.03905 (rank : 230)
Query Neighborhood Hits	276	Target Neighborhood Hits	358	Shared Neighborhood Hits	232
SwissProt Accessions	Q03014	Gene names	HHEX, HEX, PRH, PRHX
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

HXC5_HUMAN
NC score	0.295818 (rank : 116)	θ value	1.06291 (rank : 153)
Query Neighborhood Hits	276	Target Neighborhood Hits	316	Shared Neighborhood Hits	227
SwissProt Accessions	Q00444	Gene names	HOXC5, HOX3D
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3D) (CP11).

HXC5_MOUSE
NC score	0.295343 (rank : 117)	θ value	1.06291 (rank : 154)
Query Neighborhood Hits	276	Target Neighborhood Hits	316	Shared Neighborhood Hits	227
SwissProt Accessions	P32043, Q8BJW4	Gene names	Hoxc5, Hox-3.4, Hoxc-5
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3.4) (Hox-6.2).

HXB4_MOUSE
NC score	0.295082 (rank : 118)	θ value	1.06291 (rank : 152)
Query Neighborhood Hits	276	Target Neighborhood Hits	375	Shared Neighborhood Hits	235
SwissProt Accessions	P10284, Q3UZB4, Q4VBG0	Gene names	Hoxb4, Hox-2.6, Hoxb-4
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2.6).

TLX3_MOUSE
NC score	0.295005 (rank : 119)	θ value	3.0926 (rank : 224)
Query Neighborhood Hits	276	Target Neighborhood Hits	346	Shared Neighborhood Hits	238
SwissProt Accessions	O55144	Gene names	Tlx3, Hox11l2, Rnx, Tlx1l2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox TLX-3) (Homeobox protein Hox-11L2) (Respiratory neuron homeobox protein).

TITF1_HUMAN
NC score	0.294967 (rank : 120)	θ value	1.06291 (rank : 165)
Query Neighborhood Hits	276	Target Neighborhood Hits	332	Shared Neighborhood Hits	235
SwissProt Accessions	P43699, O14954, O14955, Q9BRJ8	Gene names	TITF1, NKX2-1, NKX2A, TTF1
Domain Architecture
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1) (Homeobox protein NK-2 homolog A).

HXC10_MOUSE
NC score	0.294921 (rank : 121)	θ value	1.81305 (rank : 179)
Query Neighborhood Hits	276	Target Neighborhood Hits	417	Shared Neighborhood Hits	246
SwissProt Accessions	P31257, P31312, Q7TMT7	Gene names	Hoxc10, Hox-3.6, Hoxc-10
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C10 (Hox-3.6).

HXB2_MOUSE
NC score	0.294179 (rank : 122)	θ value	0.0736092 (rank : 77)
Query Neighborhood Hits	276	Target Neighborhood Hits	350	Shared Neighborhood Hits	227
SwissProt Accessions	P0C1T1	Gene names	Hoxb2, Hox-2.8
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-B2 (Hox-2.8).

HXA3_HUMAN
NC score	0.294045 (rank : 123)	θ value	0.813845 (rank : 134)
Query Neighborhood Hits	276	Target Neighborhood Hits	535	Shared Neighborhood Hits	240
SwissProt Accessions	O43365	Gene names	HOXA3, HOX1E
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1E).

HXA10_HUMAN
NC score	0.293908 (rank : 124)	θ value	2.36792 (rank : 193)
Query Neighborhood Hits	276	Target Neighborhood Hits	334	Shared Neighborhood Hits	239
SwissProt Accessions	P31260, O43370, O43605, Q15949	Gene names	HOXA10, HOX1H
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL).

TITF1_MOUSE
NC score	0.293577 (rank : 125)	θ value	1.06291 (rank : 166)
Query Neighborhood Hits	276	Target Neighborhood Hits	335	Shared Neighborhood Hits	235
SwissProt Accessions	P50220	Gene names	Titf1, Nkx-2.1, Nkx2-1, Ttf1
Domain Architecture	No domain graphic available
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1).

GSHI_MOUSE
NC score	0.293559 (rank : 126)	θ value	1.81305 (rank : 176)
Query Neighborhood Hits	276	Target Neighborhood Hits	313	Shared Neighborhood Hits	231
SwissProt Accessions	P31315	Gene names	Gsh1, Gsh-1
Domain Architecture
Description	Homeobox protein GSH-1.

HXC10_HUMAN
NC score	0.293376 (rank : 127)	θ value	1.81305 (rank : 178)
Query Neighborhood Hits	276	Target Neighborhood Hits	417	Shared Neighborhood Hits	246
SwissProt Accessions	Q9NYD6, O15219, O15220, Q9BVD5	Gene names	HOXC10
Domain Architecture
Description	Homeobox protein Hox-C10.

HXA3_MOUSE
NC score	0.292800 (rank : 128)	θ value	0.813845 (rank : 135)
Query Neighborhood Hits	276	Target Neighborhood Hits	558	Shared Neighborhood Hits	241
SwissProt Accessions	P02831, Q4V9Z8, Q61197	Gene names	Hoxa3, Hox-1.5, Hoxa-3
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1.5) (MO-10).

NKX25_HUMAN
NC score	0.292545 (rank : 129)	θ value	0.279714 (rank : 107)
Query Neighborhood Hits	276	Target Neighborhood Hits	338	Shared Neighborhood Hits	246
SwissProt Accessions	P52952	Gene names	NKX2-5, CSX, NKX2.5, NKX2E
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

HLX1_HUMAN
NC score	0.292053 (rank : 130)	θ value	1.81305 (rank : 177)
Query Neighborhood Hits	276	Target Neighborhood Hits	370	Shared Neighborhood Hits	244
SwissProt Accessions	Q14774, Q15988	Gene names	HLX1
Domain Architecture
Description	Homeobox protein HLX1 (Homeobox protein HB24).

HXC4_MOUSE
NC score	0.291837 (rank : 131)	θ value	1.81305 (rank : 180)
Query Neighborhood Hits	276	Target Neighborhood Hits	365	Shared Neighborhood Hits	237
SwissProt Accessions	Q08624	Gene names	Hoxc4, Hox-3.5, Hoxc-4
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3.5).

HXD3_HUMAN
NC score	0.291300 (rank : 132)	θ value	1.06291 (rank : 155)
Query Neighborhood Hits	276	Target Neighborhood Hits	433	Shared Neighborhood Hits	239
SwissProt Accessions	P31249, Q99955, Q9BSC5	Gene names	HOXD3, HOX4A
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4A).

GSHI_HUMAN
NC score	0.291250 (rank : 133)	θ value	1.81305 (rank : 175)
Query Neighborhood Hits	276	Target Neighborhood Hits	314	Shared Neighborhood Hits	233
SwissProt Accessions	Q9H4S2	Gene names	GSH1
Domain Architecture
Description	Homeobox protein GSH-1.

HXD3_MOUSE
NC score	0.291049 (rank : 134)	θ value	1.06291 (rank : 156)
Query Neighborhood Hits	276	Target Neighborhood Hits	435	Shared Neighborhood Hits	240
SwissProt Accessions	P09027, Q3UUD3	Gene names	Hoxd3, Hox-4.1, Hoxd-3
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4.1) (Homeobox protein MH-19).

HXA10_MOUSE
NC score	0.290872 (rank : 135)	θ value	2.36792 (rank : 194)
Query Neighborhood Hits	276	Target Neighborhood Hits	365	Shared Neighborhood Hits	239
SwissProt Accessions	P31310, Q80Y22	Gene names	Hoxa10, Hox-1.8, Hoxa-10
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1.8).

MSX2_HUMAN
NC score	0.290522 (rank : 136)	θ value	0.0563607 (rank : 72)
Query Neighborhood Hits	276	Target Neighborhood Hits	337	Shared Neighborhood Hits	236
SwissProt Accessions	P35548	Gene names	MSX2, HOX8
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8).

NKX25_MOUSE
NC score	0.289941 (rank : 137)	θ value	0.279714 (rank : 108)
Query Neighborhood Hits	276	Target Neighborhood Hits	347	Shared Neighborhood Hits	243
SwissProt Accessions	P42582, P97335	Gene names	Nkx2-5, Csx, Nkx-2.5, Nkx2e
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

ALX3_MOUSE
NC score	0.289373 (rank : 138)	θ value	0.21417 (rank : 94)
Query Neighborhood Hits	276	Target Neighborhood Hits	386	Shared Neighborhood Hits	246
SwissProt Accessions	O70137	Gene names	Alx3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

HHEX_MOUSE
NC score	0.289366 (rank : 139)	θ value	4.03905 (rank : 231)
Query Neighborhood Hits	276	Target Neighborhood Hits	350	Shared Neighborhood Hits	235
SwissProt Accessions	P43120	Gene names	Hhex, Prhx
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

ALX3_HUMAN
NC score	0.289256 (rank : 140)	θ value	0.21417 (rank : 93)
Query Neighborhood Hits	276	Target Neighborhood Hits	380	Shared Neighborhood Hits	247
SwissProt Accessions	O95076, O95075	Gene names	ALX3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

MSX1_MOUSE
NC score	0.289230 (rank : 141)	θ value	0.125558 (rank : 90)
Query Neighborhood Hits	276	Target Neighborhood Hits	322	Shared Neighborhood Hits	236
SwissProt Accessions	P13297	Gene names	Msx1, Hox7, Hox7.1
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7) (Hox- 7.1).

MSX1_HUMAN
NC score	0.288754 (rank : 142)	θ value	0.125558 (rank : 89)
Query Neighborhood Hits	276	Target Neighborhood Hits	374	Shared Neighborhood Hits	237
SwissProt Accessions	P28360, Q96NY4	Gene names	MSX1, HOX7
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7).

HXD10_MOUSE
NC score	0.288633 (rank : 143)	θ value	3.0926 (rank : 214)
Query Neighborhood Hits	276	Target Neighborhood Hits	392	Shared Neighborhood Hits	245
SwissProt Accessions	P28359, Q91WU9	Gene names	Hoxd10, Hox-4.5, Hoxd-10
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4.5) (Hox-5.3).

MSX2_MOUSE
NC score	0.288518 (rank : 144)	θ value	0.0563607 (rank : 73)
Query Neighborhood Hits	276	Target Neighborhood Hits	345	Shared Neighborhood Hits	236
SwissProt Accessions	Q03358, Q63856	Gene names	Msx2, Hox-8.1, Msx-2
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8.1).

HXD10_HUMAN
NC score	0.288340 (rank : 145)	θ value	3.0926 (rank : 213)
Query Neighborhood Hits	276	Target Neighborhood Hits	392	Shared Neighborhood Hits	245
SwissProt Accessions	P28358	Gene names	HOXD10, HOX4D
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4D) (Hox-4E).

HXB2_HUMAN
NC score	0.288291 (rank : 146)	θ value	0.0961366 (rank : 81)
Query Neighborhood Hits	276	Target Neighborhood Hits	367	Shared Neighborhood Hits	231
SwissProt Accessions	P14652, P10913, P17485	Gene names	HOXB2, HOX2H
Domain Architecture
Description	Homeobox protein Hox-B2 (Hox-2H) (Hox-2.8) (K8).

TLX1_MOUSE
NC score	0.288060 (rank : 147)	θ value	1.06291 (rank : 167)
Query Neighborhood Hits	276	Target Neighborhood Hits	347	Shared Neighborhood Hits	237
SwissProt Accessions	P43345	Gene names	Tlx1, Hox11, Tlx-1
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (Homeobox TLX-1).

HXA13_MOUSE
NC score	0.287982 (rank : 148)	θ value	0.813845 (rank : 133)
Query Neighborhood Hits	276	Target Neighborhood Hits	351	Shared Neighborhood Hits	248
SwissProt Accessions	Q62424	Gene names	Hoxa13, Hox-1.10
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1.10).

LBX1_HUMAN
NC score	0.287930 (rank : 149)	θ value	3.0926 (rank : 216)
Query Neighborhood Hits	276	Target Neighborhood Hits	357	Shared Neighborhood Hits	248
SwissProt Accessions	P52954	Gene names	LBX1
Domain Architecture
Description	Transcription factor LBX1.

HXC4_HUMAN
NC score	0.287256 (rank : 150)	θ value	6.88961 (rank : 251)
Query Neighborhood Hits	276	Target Neighborhood Hits	361	Shared Neighborhood Hits	239
SwissProt Accessions	P09017	Gene names	HOXC4, HOX3E
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3E) (CP19).

EMX1_HUMAN
NC score	0.287160 (rank : 151)	θ value	6.88961 (rank : 245)
Query Neighborhood Hits	276	Target Neighborhood Hits	336	Shared Neighborhood Hits	246
SwissProt Accessions	Q04741, Q86XB0	Gene names	EMX1
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty spiracles- like protein 1).

HXA13_HUMAN
NC score	0.286420 (rank : 152)	θ value	0.813845 (rank : 132)
Query Neighborhood Hits	276	Target Neighborhood Hits	353	Shared Neighborhood Hits	248
SwissProt Accessions	P31271, O43371	Gene names	HOXA13, HOX1J
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1J).

HXB9_MOUSE
NC score	0.285678 (rank : 153)	θ value	3.0926 (rank : 212)
Query Neighborhood Hits	276	Target Neighborhood Hits	344	Shared Neighborhood Hits	234
SwissProt Accessions	P20615	Gene names	Hoxb9, Hox-2.5, Hoxb-9
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2.5).

TLX2_MOUSE
NC score	0.285346 (rank : 154)	θ value	2.36792 (rank : 204)
Query Neighborhood Hits	276	Target Neighborhood Hits	336	Shared Neighborhood Hits	236
SwissProt Accessions	Q61663	Gene names	Tlx2, Hox11l1, Tlx1l1
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Homeobox TLX-2) (PMUR10F).

TLX2_HUMAN
NC score	0.284778 (rank : 155)	θ value	2.36792 (rank : 203)
Query Neighborhood Hits	276	Target Neighborhood Hits	352	Shared Neighborhood Hits	236
SwissProt Accessions	O43763, Q9UQ48	Gene names	TLX2, HOX11L1, NCX
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Neural crest homeobox protein).

ALX4_MOUSE
NC score	0.284708 (rank : 156)	θ value	0.0563607 (rank : 68)
Query Neighborhood Hits	276	Target Neighborhood Hits	369	Shared Neighborhood Hits	250
SwissProt Accessions	O35137	Gene names	Alx4
Domain Architecture
Description	Homeobox protein aristaless-like 4 (ALX-4).

HXD11_MOUSE
NC score	0.284516 (rank : 157)	θ value	0.813845 (rank : 136)
Query Neighborhood Hits	276	Target Neighborhood Hits	376	Shared Neighborhood Hits	242
SwissProt Accessions	P23813	Gene names	Hoxd11, Hox-4.6, Hoxd-11
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5).

TLX1_HUMAN
NC score	0.284036 (rank : 158)	θ value	2.36792 (rank : 202)
Query Neighborhood Hits	276	Target Neighborhood Hits	347	Shared Neighborhood Hits	238
SwissProt Accessions	P31314, O75699, Q9HCA0	Gene names	TLX1, HOX11, TCL3
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (TCL-3 proto-oncogene).

HXA2_MOUSE
NC score	0.283889 (rank : 159)	θ value	1.06291 (rank : 148)
Query Neighborhood Hits	276	Target Neighborhood Hits	338	Shared Neighborhood Hits	229
SwissProt Accessions	P31245, Q149U3, Q920T8	Gene names	Hoxa2, Hox-1.11, Hoxa-2
Domain Architecture
Description	Homeobox protein Hox-A2 (Hox-1.11) (Hox1.11).

HXB3_MOUSE
NC score	0.283815 (rank : 160)	θ value	1.06291 (rank : 150)
Query Neighborhood Hits	276	Target Neighborhood Hits	493	Shared Neighborhood Hits	233
SwissProt Accessions	P09026, P10285, Q4PJ06, Q61680	Gene names	Hoxb3, Hox-2.7, Hoxb-3
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2.7) (Homeobox protein MH-23).

OTP_MOUSE
NC score	0.283603 (rank : 161)	θ value	0.47712 (rank : 121)
Query Neighborhood Hits	276	Target Neighborhood Hits	387	Shared Neighborhood Hits	242
SwissProt Accessions	O09113	Gene names	Otp
Domain Architecture
Description	Homeobox protein orthopedia.

HXA2_HUMAN
NC score	0.283081 (rank : 162)	θ value	1.06291 (rank : 147)
Query Neighborhood Hits	276	Target Neighborhood Hits	370	Shared Neighborhood Hits	229
SwissProt Accessions	O43364	Gene names	HOXA2
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A2.

ALX4_HUMAN
NC score	0.282979 (rank : 163)	θ value	0.0563607 (rank : 67)
Query Neighborhood Hits	276	Target Neighborhood Hits	394	Shared Neighborhood Hits	245
SwissProt Accessions	Q9H161, Q96JN7, Q9H198, Q9HAY9	Gene names	ALX4, KIAA1788
Domain Architecture
Description	Homeobox protein aristaless-like 4.

LBX1_MOUSE
NC score	0.282718 (rank : 164)	θ value	6.88961 (rank : 253)
Query Neighborhood Hits	276	Target Neighborhood Hits	349	Shared Neighborhood Hits	247
SwissProt Accessions	P52955	Gene names	Lbx1, Lbx1h
Domain Architecture
Description	Transcription factor LBX1.

HXB3_HUMAN
NC score	0.282544 (rank : 165)	θ value	1.06291 (rank : 149)
Query Neighborhood Hits	276	Target Neighborhood Hits	559	Shared Neighborhood Hits	235
SwissProt Accessions	P14651, O95615, P17484	Gene names	HOXB3, HOX2G
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7).

HXB9_HUMAN
NC score	0.282455 (rank : 166)	θ value	3.0926 (rank : 211)
Query Neighborhood Hits	276	Target Neighborhood Hits	344	Shared Neighborhood Hits	235
SwissProt Accessions	P17482, Q9H1I1	Gene names	HOXB9, HOX2E
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5).

TLX3_HUMAN
NC score	0.282295 (rank : 167)	θ value	3.0926 (rank : 223)
Query Neighborhood Hits	276	Target Neighborhood Hits	403	Shared Neighborhood Hits	237
SwissProt Accessions	O43711, Q96AD3	Gene names	TLX3, HOX11L2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox protein Hox-11L2).

NKX26_MOUSE
NC score	0.282049 (rank : 168)	θ value	1.06291 (rank : 159)
Query Neighborhood Hits	276	Target Neighborhood Hits	343	Shared Neighborhood Hits	235
SwissProt Accessions	P43688	Gene names	Nkx2-6, Nkx-2.6, Nkx2f
Domain Architecture
Description	Homeobox protein Nkx-2.6 (Homeobox protein NK-2 homolog F).

HXD11_HUMAN
NC score	0.281962 (rank : 169)	θ value	3.0926 (rank : 215)
Query Neighborhood Hits	276	Target Neighborhood Hits	353	Shared Neighborhood Hits	242
SwissProt Accessions	P31277, Q9NS02	Gene names	HOXD11, HOX4F
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4F).

NKX22_MOUSE
NC score	0.280722 (rank : 170)	θ value	0.279714 (rank : 106)
Query Neighborhood Hits	276	Target Neighborhood Hits	336	Shared Neighborhood Hits	243
SwissProt Accessions	P42586	Gene names	Nkx2-2, Nkx-2.2, Nkx2b
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

HME2_HUMAN
NC score	0.280253 (rank : 171)	θ value	6.88961 (rank : 248)
Query Neighborhood Hits	276	Target Neighborhood Hits	355	Shared Neighborhood Hits	247
SwissProt Accessions	P19622	Gene names	EN2
Domain Architecture
Description	Homeobox protein engrailed-2 (Hu-En-2).

HXB13_HUMAN
NC score	0.279813 (rank : 172)	θ value	4.03905 (rank : 232)
Query Neighborhood Hits	276	Target Neighborhood Hits	377	Shared Neighborhood Hits	247
SwissProt Accessions	Q92826, Q96QM4, Q99810	Gene names	HOXB13
Domain Architecture
Description	Homeobox protein Hox-B13.

NKX22_HUMAN
NC score	0.279610 (rank : 173)	θ value	0.279714 (rank : 105)
Query Neighborhood Hits	276	Target Neighborhood Hits	342	Shared Neighborhood Hits	239
SwissProt Accessions	O95096	Gene names	NKX2-2, NKX2.2, NKX2B
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

HME2_MOUSE
NC score	0.278933 (rank : 174)	θ value	6.88961 (rank : 249)
Query Neighborhood Hits	276	Target Neighborhood Hits	352	Shared Neighborhood Hits	247
SwissProt Accessions	P09066	Gene names	En2, En-2
Domain Architecture
Description	Homeobox protein engrailed-2 (Mo-En-2).

HLX1_MOUSE
NC score	0.278672 (rank : 175)	θ value	θ > 10 (rank : 307)
Query Neighborhood Hits	276	Target Neighborhood Hits	362	Shared Neighborhood Hits	240
SwissProt Accessions	Q61670	Gene names	Hlx1, Hlx
Domain Architecture
Description	Homeobox protein HLX1.

NKX32_HUMAN
NC score	0.278175 (rank : 176)	θ value	2.36792 (rank : 197)
Query Neighborhood Hits	276	Target Neighborhood Hits	323	Shared Neighborhood Hits	238
SwissProt Accessions	P78367	Gene names	BAPX1, NKX3B
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

PAX4_HUMAN
NC score	0.277820 (rank : 177)	θ value	0.0113563 (rank : 56)
Query Neighborhood Hits	276	Target Neighborhood Hits	367	Shared Neighborhood Hits	245
SwissProt Accessions	O43316, O95161, Q6B0H0	Gene names	PAX4
Domain Architecture
Description	Paired box protein Pax-4.

NKX32_MOUSE
NC score	0.277515 (rank : 178)	θ value	2.36792 (rank : 198)
Query Neighborhood Hits	276	Target Neighborhood Hits	326	Shared Neighborhood Hits	238
SwissProt Accessions	P97503	Gene names	Bapx1, Nkx-3.2, Nkx3-2, Nkx3b
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

GSC_HUMAN
NC score	0.276839 (rank : 179)	θ value	5.27518 (rank : 241)
Query Neighborhood Hits	276	Target Neighborhood Hits	369	Shared Neighborhood Hits	245
SwissProt Accessions	P56915, Q86YR1	Gene names	GSC
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid.

MSX3_MOUSE
NC score	0.275490 (rank : 180)	θ value	0.47712 (rank : 120)
Query Neighborhood Hits	276	Target Neighborhood Hits	330	Shared Neighborhood Hits	231
SwissProt Accessions	P70354, P70246, Q03360, Q80W10	Gene names	Msx3, Msx-3
Domain Architecture
Description	Homeobox protein MSX-3.

NKX24_HUMAN
NC score	0.275296 (rank : 181)	θ value	3.0926 (rank : 218)
Query Neighborhood Hits	276	Target Neighborhood Hits	366	Shared Neighborhood Hits	238
SwissProt Accessions	Q9H2Z4	Gene names	NKX2-4, NKX2D
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

DLX4_HUMAN
NC score	0.273654 (rank : 182)	θ value	2.36792 (rank : 192)
Query Neighborhood Hits	276	Target Neighborhood Hits	350	Shared Neighborhood Hits	243
SwissProt Accessions	Q92988, O60480, Q13265, Q6PJK0, Q9HBE0	Gene names	DLX4, BP1, DLX7, DLX8
Domain Architecture	No domain graphic available
Description	Homeobox protein DLX-4 (DLX-7) (DLX-8) (Beta protein 1).

GSC_MOUSE
NC score	0.272579 (rank : 183)	θ value	4.03905 (rank : 229)
Query Neighborhood Hits	276	Target Neighborhood Hits	368	Shared Neighborhood Hits	242
SwissProt Accessions	Q02591	Gene names	Gsc
Domain Architecture
Description	Homeobox protein goosecoid.

PAX4_MOUSE
NC score	0.272438 (rank : 184)	θ value	0.0252991 (rank : 62)
Query Neighborhood Hits	276	Target Neighborhood Hits	370	Shared Neighborhood Hits	243
SwissProt Accessions	P32115, P97341, Q9QUR1, Q9R091	Gene names	Pax4, Pax-4
Domain Architecture
Description	Paired box protein Pax-4.

HME1_HUMAN
NC score	0.272223 (rank : 185)	θ value	6.88961 (rank : 246)
Query Neighborhood Hits	276	Target Neighborhood Hits	384	Shared Neighborhood Hits	240
SwissProt Accessions	Q05925	Gene names	EN1
Domain Architecture
Description	Homeobox protein engrailed-1 (Hu-En-1).

DLX4_MOUSE
NC score	0.272089 (rank : 186)	θ value	4.03905 (rank : 227)
Query Neighborhood Hits	276	Target Neighborhood Hits	352	Shared Neighborhood Hits	243
SwissProt Accessions	P70436, Q3UM51, Q8R4I3	Gene names	Dlx4, Dlx7
Domain Architecture
Description	Homeobox protein DLX-4 (DLX-7).

HXB13_MOUSE
NC score	0.272007 (rank : 187)	θ value	5.27518 (rank : 242)
Query Neighborhood Hits	276	Target Neighborhood Hits	384	Shared Neighborhood Hits	244
SwissProt Accessions	P70321, Q80Y12	Gene names	Hoxb13
Domain Architecture
Description	Homeobox protein Hox-B13.

NKX24_MOUSE
NC score	0.271889 (rank : 188)	θ value	3.0926 (rank : 219)
Query Neighborhood Hits	276	Target Neighborhood Hits	356	Shared Neighborhood Hits	236
SwissProt Accessions	Q9EQM3, Q9EQM4	Gene names	Nkx2-4, Nkx2d
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

HME1_MOUSE
NC score	0.271854 (rank : 189)	θ value	6.88961 (rank : 247)
Query Neighborhood Hits	276	Target Neighborhood Hits	397	Shared Neighborhood Hits	240
SwissProt Accessions	P09065	Gene names	En1, En-1
Domain Architecture
Description	Homeobox protein engrailed-1 (Mo-En-1).

BARH1_HUMAN
NC score	0.271132 (rank : 190)	θ value	3.0926 (rank : 207)
Query Neighborhood Hits	276	Target Neighborhood Hits	373	Shared Neighborhood Hits	240
SwissProt Accessions	Q9BZE3, Q9NY88	Gene names	BARHL1
Domain Architecture
Description	BarH-like 1 homeobox protein.

HMX3_MOUSE
NC score	0.270989 (rank : 191)	θ value	8.99809 (rank : 266)
Query Neighborhood Hits	276	Target Neighborhood Hits	342	Shared Neighborhood Hits	237
SwissProt Accessions	P42581	Gene names	Hmx3, Nkx-5.1, Nkx5-1
Domain Architecture
Description	Homeobox protein HMX3 (Homeobox protein Nkx-5.1).

MEOX1_MOUSE
NC score	0.270477 (rank : 192)	θ value	8.99809 (rank : 270)
Query Neighborhood Hits	276	Target Neighborhood Hits	345	Shared Neighborhood Hits	238
SwissProt Accessions	P32442	Gene names	Meox1, Mox-1, Mox1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

HXC11_HUMAN
NC score	0.270284 (rank : 193)	θ value	6.88961 (rank : 250)
Query Neighborhood Hits	276	Target Neighborhood Hits	349	Shared Neighborhood Hits	238
SwissProt Accessions	O43248, Q96DH2	Gene names	HOXC11
Domain Architecture
Description	Homeobox protein Hox-C11.

DBX1_MOUSE
NC score	0.270160 (rank : 194)	θ value	θ > 10 (rank : 293)
Query Neighborhood Hits	276	Target Neighborhood Hits	346	Shared Neighborhood Hits	236
SwissProt Accessions	P52950	Gene names	Dbx1, Dbx
Domain Architecture
Description	Homeobox protein DBX1.

NKX23_MOUSE
NC score	0.269207 (rank : 195)	θ value	1.81305 (rank : 181)
Query Neighborhood Hits	276	Target Neighborhood Hits	340	Shared Neighborhood Hits	242
SwissProt Accessions	P97334, Q9QZ60, Q9WV67	Gene names	Nkx2-3, Nkx-2.3, Nkx2c
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NK-2 homolog C) (Nkx2-C) (Homeobox protein NK-2 homolog 3).

NKX23_HUMAN
NC score	0.269025 (rank : 196)	θ value	6.88961 (rank : 257)
Query Neighborhood Hits	276	Target Neighborhood Hits	346	Shared Neighborhood Hits	247
SwissProt Accessions	Q8TAU0, Q9NYS6	Gene names	NKX2-3, NKX23, NKX2C
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NKX-2.3) (Homeobox protein NK-2 homolog C).

CDX1_HUMAN
NC score	0.268903 (rank : 197)	θ value	θ > 10 (rank : 281)
Query Neighborhood Hits	276	Target Neighborhood Hits	382	Shared Neighborhood Hits	231
SwissProt Accessions	P47902, Q4VAU4, Q9NYK8	Gene names	CDX1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

MEOX1_HUMAN
NC score	0.268088 (rank : 198)	θ value	0.47712 (rank : 119)
Query Neighborhood Hits	276	Target Neighborhood Hits	342	Shared Neighborhood Hits	235
SwissProt Accessions	P50221	Gene names	MEOX1, MOX1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

HXD13_HUMAN
NC score	0.267941 (rank : 199)	θ value	8.99809 (rank : 267)
Query Neighborhood Hits	276	Target Neighborhood Hits	332	Shared Neighborhood Hits	243
SwissProt Accessions	P35453	Gene names	HOXD13, HOX4I
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4I).

HXD13_MOUSE
NC score	0.267934 (rank : 200)	θ value	8.99809 (rank : 268)
Query Neighborhood Hits	276	Target Neighborhood Hits	324	Shared Neighborhood Hits	243
SwissProt Accessions	P70217, Q2VPB0, Q2VPB1, Q64177	Gene names	Hoxd13, Hox-4.8
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4.8).

CART1_HUMAN
NC score	0.267520 (rank : 201)	θ value	0.21417 (rank : 95)
Query Neighborhood Hits	276	Target Neighborhood Hits	348	Shared Neighborhood Hits	241
SwissProt Accessions	Q15699, Q546C8, Q96FH4	Gene names	CART1
Domain Architecture
Description	Cartilage homeoprotein 1 (CART-1).

CDX1_MOUSE
NC score	0.267419 (rank : 202)	θ value	θ > 10 (rank : 282)
Query Neighborhood Hits	276	Target Neighborhood Hits	379	Shared Neighborhood Hits	230
SwissProt Accessions	P18111, Q8VCF7	Gene names	Cdx1, Cdx-1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

MEOX2_HUMAN
NC score	0.266814 (rank : 203)	θ value	8.99809 (rank : 271)
Query Neighborhood Hits	276	Target Neighborhood Hits	340	Shared Neighborhood Hits	233
SwissProt Accessions	P50222, O75263, Q9UPL6	Gene names	MEOX2, GAX, MOX2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth arrest-specific homeobox).

CART1_MOUSE
NC score	0.266778 (rank : 204)	θ value	0.21417 (rank : 96)
Query Neighborhood Hits	276	Target Neighborhood Hits	344	Shared Neighborhood Hits	238
SwissProt Accessions	Q8C8B0, Q8C370	Gene names	Cart1
Domain Architecture	No domain graphic available
Description	Cartilage homeoprotein 1 (CART-1).

MEOX2_MOUSE
NC score	0.266677 (rank : 205)	θ value	8.99809 (rank : 272)
Query Neighborhood Hits	276	Target Neighborhood Hits	341	Shared Neighborhood Hits	233
SwissProt Accessions	P32443, Q544T6	Gene names	Meox2, Gax, Mox-2, Mox2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2).

BARH1_MOUSE
NC score	0.265856 (rank : 206)	θ value	3.0926 (rank : 208)
Query Neighborhood Hits	276	Target Neighborhood Hits	350	Shared Neighborhood Hits	239
SwissProt Accessions	P63157, Q9JK26	Gene names	Barhl1, Bhx1, Mbh2
Domain Architecture	No domain graphic available
Description	BarH-like 1 homeobox protein (Bar-class homeodomain protein MBH2) (BarH-related homeobox protein 1).

BARX2_HUMAN
NC score	0.265399 (rank : 207)	θ value	θ > 10 (rank : 279)
Query Neighborhood Hits	276	Target Neighborhood Hits	387	Shared Neighborhood Hits	238
SwissProt Accessions	Q9UMQ3, O43518	Gene names	BARX2
Domain Architecture
Description	Homeobox protein BarH-like 2.

CDX4_HUMAN
NC score	0.265114 (rank : 208)	θ value	θ > 10 (rank : 285)
Query Neighborhood Hits	276	Target Neighborhood Hits	366	Shared Neighborhood Hits	236
SwissProt Accessions	O14627, Q5JS20	Gene names	CDX4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

BARX2_MOUSE
NC score	0.264741 (rank : 209)	θ value	θ > 10 (rank : 280)
Query Neighborhood Hits	276	Target Neighborhood Hits	335	Shared Neighborhood Hits	237
SwissProt Accessions	O08686	Gene names	Barx2
Domain Architecture
Description	Homeobox protein BarH-like 2.

HXC13_HUMAN
NC score	0.263563 (rank : 210)	θ value	2.36792 (rank : 195)
Query Neighborhood Hits	276	Target Neighborhood Hits	336	Shared Neighborhood Hits	243
SwissProt Accessions	P31276, Q96J32, Q9NR24, Q9NYD5	Gene names	HOXC13, HOX3G
Domain Architecture
Description	Homeobox protein Hox-C13 (Hox-3G).

HXC13_MOUSE
NC score	0.263515 (rank : 211)	θ value	2.36792 (rank : 196)
Query Neighborhood Hits	276	Target Neighborhood Hits	337	Shared Neighborhood Hits	243
SwissProt Accessions	P50207, Q53Z78, Q920I7	Gene names	Hoxc13, Hoxc-13
Domain Architecture
Description	Homeobox protein Hox-C13.

CDX4_MOUSE
NC score	0.263127 (rank : 212)	θ value	θ > 10 (rank : 286)
Query Neighborhood Hits	276	Target Neighborhood Hits	378	Shared Neighborhood Hits	234
SwissProt Accessions	Q07424	Gene names	Cdx4, Cdx-4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

PHX2A_HUMAN
NC score	0.262518 (rank : 213)	θ value	1.81305 (rank : 185)
Query Neighborhood Hits	276	Target Neighborhood Hits	345	Shared Neighborhood Hits	232
SwissProt Accessions	O14813, Q8IVZ2	Gene names	PHOX2A, ARIX, PMX2A
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (Aristaless homeobox protein homolog) (ARIX1 homeodomain protein).

CDX2_HUMAN
NC score	0.261814 (rank : 214)	θ value	θ > 10 (rank : 283)
Query Neighborhood Hits	276	Target Neighborhood Hits	330	Shared Neighborhood Hits	225
SwissProt Accessions	Q99626, O00503, Q969L8	Gene names	CDX2, CDX3
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2) (CDX-3).

PHX2A_MOUSE
NC score	0.261800 (rank : 215)	θ value	1.81305 (rank : 186)
Query Neighborhood Hits	276	Target Neighborhood Hits	338	Shared Neighborhood Hits	232
SwissProt Accessions	Q62066	Gene names	Phox2a, Arix, Phox2, Pmx2, Pmx2a
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (PHOX2A homeodomain protein) (Aristaless homeobox protein homolog).

EVX1_MOUSE
NC score	0.261765 (rank : 216)	θ value	3.0926 (rank : 210)
Query Neighborhood Hits	276	Target Neighborhood Hits	350	Shared Neighborhood Hits	230
SwissProt Accessions	P23683	Gene names	Evx1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

BARH2_HUMAN
NC score	0.261416 (rank : 217)	θ value	5.27518 (rank : 236)
Query Neighborhood Hits	276	Target Neighborhood Hits	419	Shared Neighborhood Hits	240
SwissProt Accessions	Q9NY43, Q7Z4N7	Gene names	BARHL2
Domain Architecture
Description	BarH-like 2 homeobox protein.

BARH2_MOUSE
NC score	0.261398 (rank : 218)	θ value	5.27518 (rank : 237)
Query Neighborhood Hits	276	Target Neighborhood Hits	397	Shared Neighborhood Hits	240
SwissProt Accessions	Q8VIB5, Q66L43	Gene names	Barhl2, Barh1, Mbh1
Domain Architecture	No domain graphic available
Description	BarH-like 2 homeobox protein (Bar-class homeodomain protein MBH1) (Homeobox protein B-H1).

VAX1_HUMAN
NC score	0.260813 (rank : 219)	θ value	6.88961 (rank : 260)
Query Neighborhood Hits	276	Target Neighborhood Hits	355	Shared Neighborhood Hits	234
SwissProt Accessions	Q5SQQ9, Q6ZSX0	Gene names	VAX1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

VAX1_MOUSE
NC score	0.260784 (rank : 220)	θ value	6.88961 (rank : 261)
Query Neighborhood Hits	276	Target Neighborhood Hits	351	Shared Neighborhood Hits	234
SwissProt Accessions	Q2NKI2, O88880	Gene names	Vax1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

CDX2_MOUSE
NC score	0.260277 (rank : 221)	θ value	θ > 10 (rank : 284)
Query Neighborhood Hits	276	Target Neighborhood Hits	336	Shared Neighborhood Hits	225
SwissProt Accessions	P43241	Gene names	Cdx2, Cdx-2
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2).

NKX31_MOUSE
NC score	0.260270 (rank : 222)	θ value	θ > 10 (rank : 341)
Query Neighborhood Hits	276	Target Neighborhood Hits	379	Shared Neighborhood Hits	231
SwissProt Accessions	P97436, O09087	Gene names	Nkx3-1, Nkx-3.1, Nkx3a
Domain Architecture
Description	Homeobox protein Nkx-3.1.

EVX1_HUMAN
NC score	0.260047 (rank : 223)	θ value	3.0926 (rank : 209)
Query Neighborhood Hits	276	Target Neighborhood Hits	349	Shared Neighborhood Hits	230
SwissProt Accessions	P49640	Gene names	EVX1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

EVX2_MOUSE
NC score	0.259517 (rank : 224)	θ value	8.99809 (rank : 264)
Query Neighborhood Hits	276	Target Neighborhood Hits	327	Shared Neighborhood Hits	229
SwissProt Accessions	P49749	Gene names	Evx2, Evx-2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

PRRXL_MOUSE
NC score	0.258017 (rank : 225)	θ value	1.81305 (rank : 187)
Query Neighborhood Hits	276	Target Neighborhood Hits	350	Shared Neighborhood Hits	248
SwissProt Accessions	Q8BYH0, Q8K3F8	Gene names	Prrxl1, Drg11
Domain Architecture	No domain graphic available
Description	Paired-related homeobox protein-like 1 (Dorsal root ganglion 11) (Homeobox protein DRG11).

PROP1_HUMAN
NC score	0.257233 (rank : 226)	θ value	8.99809 (rank : 275)
Query Neighborhood Hits	276	Target Neighborhood Hits	354	Shared Neighborhood Hits	247
SwissProt Accessions	O75360	Gene names	PROP1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

NKX31_HUMAN
NC score	0.257032 (rank : 227)	θ value	θ > 10 (rank : 340)
Query Neighborhood Hits	276	Target Neighborhood Hits	331	Shared Neighborhood Hits	231
SwissProt Accessions	Q99801, O15465, Q9H2P4, Q9H2P5, Q9H2P6, Q9H2P7, Q9HBG0	Gene names	NKX3-1, NKX3.1, NKX3A
Domain Architecture
Description	Homeobox protein Nkx-3.1.

EVX2_HUMAN
NC score	0.256478 (rank : 228)	θ value	0.813845 (rank : 129)
Query Neighborhood Hits	276	Target Neighborhood Hits	325	Shared Neighborhood Hits	226
SwissProt Accessions	Q03828	Gene names	EVX2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

PHX2B_HUMAN
NC score	0.255997 (rank : 229)	θ value	2.36792 (rank : 199)
Query Neighborhood Hits	276	Target Neighborhood Hits	407	Shared Neighborhood Hits	232
SwissProt Accessions	Q99453, Q6PJD9	Gene names	PHOX2B, PMX2B
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

PHX2B_MOUSE
NC score	0.255997 (rank : 230)	θ value	2.36792 (rank : 200)
Query Neighborhood Hits	276	Target Neighborhood Hits	407	Shared Neighborhood Hits	232
SwissProt Accessions	O35690	Gene names	Phox2b, Pmx2b
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

HXA11_HUMAN
NC score	0.255247 (rank : 231)	θ value	θ > 10 (rank : 314)
Query Neighborhood Hits	276	Target Neighborhood Hits	334	Shared Neighborhood Hits	227
SwissProt Accessions	P31270	Gene names	HOXA11, HOX1I
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1I).

HXA11_MOUSE
NC score	0.254850 (rank : 232)	θ value	θ > 10 (rank : 315)
Query Neighborhood Hits	276	Target Neighborhood Hits	327	Shared Neighborhood Hits	227
SwissProt Accessions	P31311, Q3V026	Gene names	Hoxa11, Hox-1.9, Hoxa-11
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1.9).

HXD12_HUMAN
NC score	0.254479 (rank : 233)	θ value	θ > 10 (rank : 318)
Query Neighborhood Hits	276	Target Neighborhood Hits	334	Shared Neighborhood Hits	229
SwissProt Accessions	P35452, Q9NS03	Gene names	HOXD12, HOX4H
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4H).

HXD12_MOUSE
NC score	0.254297 (rank : 234)	θ value	θ > 10 (rank : 319)
Query Neighborhood Hits	276	Target Neighborhood Hits	370	Shared Neighborhood Hits	229
SwissProt Accessions	P23812	Gene names	Hoxd12, Hox-4.7, Hoxd-12
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4.7) (Hox-5.6).

VAX2_HUMAN
NC score	0.253818 (rank : 235)	θ value	6.88961 (rank : 262)
Query Neighborhood Hits	276	Target Neighborhood Hits	337	Shared Neighborhood Hits	231
SwissProt Accessions	Q9UIW0	Gene names	VAX2
Domain Architecture
Description	Ventral anterior homeobox 2.

BARX1_HUMAN
NC score	0.253806 (rank : 236)	θ value	θ > 10 (rank : 277)
Query Neighborhood Hits	276	Target Neighborhood Hits	326	Shared Neighborhood Hits	230
SwissProt Accessions	Q9HBU1	Gene names	BARX1
Domain Architecture
Description	Homeobox protein BarH-like 1.

VAX2_MOUSE
NC score	0.253258 (rank : 237)	θ value	6.88961 (rank : 263)
Query Neighborhood Hits	276	Target Neighborhood Hits	338	Shared Neighborhood Hits	231
SwissProt Accessions	Q9WTP9	Gene names	Vax2, Vex
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 2 (Ventral retina homeodomain protein).

BARX1_MOUSE
NC score	0.253101 (rank : 238)	θ value	θ > 10 (rank : 278)
Query Neighborhood Hits	276	Target Neighborhood Hits	324	Shared Neighborhood Hits	230
SwissProt Accessions	Q9ER42, O09066, P70159, Q9ERV2	Gene names	Barx1
Domain Architecture
Description	Homeobox protein BarH-like 1.

RX_MOUSE
NC score	0.250661 (rank : 239)	θ value	5.27518 (rank : 244)
Query Neighborhood Hits	276	Target Neighborhood Hits	429	Shared Neighborhood Hits	238
SwissProt Accessions	O35602, O08748	Gene names	Rax, Rx
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

RX_HUMAN
NC score	0.249417 (rank : 240)	θ value	5.27518 (rank : 243)
Query Neighborhood Hits	276	Target Neighborhood Hits	423	Shared Neighborhood Hits	240
SwissProt Accessions	Q9Y2V3	Gene names	RAX, RX
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

ARX_HUMAN
NC score	0.248620 (rank : 241)	θ value	4.03905 (rank : 225)
Query Neighborhood Hits	276	Target Neighborhood Hits	401	Shared Neighborhood Hits	237
SwissProt Accessions	Q96QS3	Gene names	ARX
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

ARX_MOUSE
NC score	0.247924 (rank : 242)	θ value	4.03905 (rank : 226)
Query Neighborhood Hits	276	Target Neighborhood Hits	398	Shared Neighborhood Hits	238
SwissProt Accessions	O35085, Q9QYT4	Gene names	Arx
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

PROP1_MOUSE
NC score	0.245965 (rank : 243)	θ value	8.99809 (rank : 276)
Query Neighborhood Hits	276	Target Neighborhood Hits	361	Shared Neighborhood Hits	245
SwissProt Accessions	P97458	Gene names	Prop1, Prop-1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

GBX2_MOUSE
NC score	0.245536 (rank : 244)	θ value	θ > 10 (rank : 303)
Query Neighborhood Hits	276	Target Neighborhood Hits	326	Shared Neighborhood Hits	218
SwissProt Accessions	P48031	Gene names	Gbx2, Mmoxa, Stra7
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2) (Homeobox protein STRA7).

ZHX3_MOUSE
NC score	0.245227 (rank : 245)	θ value	0.0563607 (rank : 76)
Query Neighborhood Hits	276	Target Neighborhood Hits	321	Shared Neighborhood Hits	167
SwissProt Accessions	Q8C0Q2, Q80U14	Gene names	Zhx3, Kiaa0395, Tix1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

GBX2_HUMAN
NC score	0.245028 (rank : 246)	θ value	θ > 10 (rank : 302)
Query Neighborhood Hits	276	Target Neighborhood Hits	322	Shared Neighborhood Hits	218
SwissProt Accessions	P52951, O43833, Q53RX5, Q9Y5Y1	Gene names	GBX2
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2).

HXC12_HUMAN
NC score	0.244852 (rank : 247)	θ value	θ > 10 (rank : 316)
Query Neighborhood Hits	276	Target Neighborhood Hits	313	Shared Neighborhood Hits	224
SwissProt Accessions	P31275, Q9BXJ6	Gene names	HOXC12, HOX3F
Domain Architecture
Description	Homeobox protein Hox-C12 (Hox-3F).

HXC12_MOUSE
NC score	0.244754 (rank : 248)	θ value	θ > 10 (rank : 317)
Query Neighborhood Hits	276	Target Neighborhood Hits	316	Shared Neighborhood Hits	224
SwissProt Accessions	Q8K5B8	Gene names	Hoxc12, Hox-3.8, Hoxc-12
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C12 (Hox-3.8).

PEPP1_HUMAN
NC score	0.244554 (rank : 249)	θ value	θ > 10 (rank : 348)
Query Neighborhood Hits	276	Target Neighborhood Hits	338	Shared Neighborhood Hits	234
SwissProt Accessions	Q8NHV9, O95030, Q3SYE0	Gene names	PEPP1, OTEX
Domain Architecture
Description	Paired-like homeobox protein PEPP-1 (Ovary-, testis- and epididymis- expressed gene protein).

GBX1_HUMAN
NC score	0.244268 (rank : 250)	θ value	θ > 10 (rank : 300)
Query Neighborhood Hits	276	Target Neighborhood Hits	334	Shared Neighborhood Hits	214
SwissProt Accessions	Q14549	Gene names	GBX1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

PAX7_HUMAN
NC score	0.243473 (rank : 251)	θ value	0.813845 (rank : 139)
Query Neighborhood Hits	276	Target Neighborhood Hits	456	Shared Neighborhood Hits	252
SwissProt Accessions	P23759	Gene names	PAX7, HUP1
Domain Architecture
Description	Paired box protein Pax-7 (HUP1).

GBX1_MOUSE
NC score	0.243187 (rank : 252)	θ value	θ > 10 (rank : 301)
Query Neighborhood Hits	276	Target Neighborhood Hits	350	Shared Neighborhood Hits	214
SwissProt Accessions	P82976, Q8CGW5	Gene names	Gbx1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

PRRX1_HUMAN
NC score	0.243174 (rank : 253)	θ value	4.03905 (rank : 233)
Query Neighborhood Hits	276	Target Neighborhood Hits	347	Shared Neighborhood Hits	238
SwissProt Accessions	P54821, O60807	Gene names	PRRX1, PMX1
Domain Architecture
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein PHOX1).

PRRX1_MOUSE
NC score	0.242419 (rank : 254)	θ value	4.03905 (rank : 234)
Query Neighborhood Hits	276	Target Neighborhood Hits	346	Shared Neighborhood Hits	236
SwissProt Accessions	P63013, P43271, Q02810	Gene names	Prrx1, Pmx, Pmx1
Domain Architecture	No domain graphic available
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein mHox) (Homeobox protein K-2).

PAX7_MOUSE
NC score	0.241718 (rank : 255)	θ value	0.813845 (rank : 140)
Query Neighborhood Hits	276	Target Neighborhood Hits	422	Shared Neighborhood Hits	252
SwissProt Accessions	P47239, Q9ES16	Gene names	Pax7, Pax-7
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-7.

PRRX2_MOUSE
NC score	0.240063 (rank : 256)	θ value	1.06291 (rank : 164)
Query Neighborhood Hits	276	Target Neighborhood Hits	351	Shared Neighborhood Hits	237
SwissProt Accessions	Q06348, Q61651	Gene names	Prrx2, Prx2, S8
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Homeobox protein S8).

HESX1_MOUSE
NC score	0.239117 (rank : 257)	θ value	θ > 10 (rank : 306)
Query Neighborhood Hits	276	Target Neighborhood Hits	331	Shared Neighborhood Hits	225
SwissProt Accessions	Q61658, Q61047	Gene names	Hesx1, Hes-1, Rpx
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (Anterior- restricted homeobox protein) (Rathke pouch homeo box).

ESX1L_HUMAN
NC score	0.238458 (rank : 258)	θ value	θ > 10 (rank : 299)
Query Neighborhood Hits	276	Target Neighborhood Hits	498	Shared Neighborhood Hits	231
SwissProt Accessions	Q8N693, Q7Z6K7	Gene names	ESX1L, ESX1R
Domain Architecture
Description	Extraembryonic, spermatogenesis, homeobox 1-like protein.

PEPP2_HUMAN
NC score	0.237767 (rank : 259)	θ value	θ > 10 (rank : 349)
Query Neighborhood Hits	276	Target Neighborhood Hits	316	Shared Neighborhood Hits	225
SwissProt Accessions	Q9BQY4, Q9BR00	Gene names	PEPP2, THG1
Domain Architecture
Description	Paired-like homeobox protein PEPP-2 (Testis homeobox gene 1).

GSCL_HUMAN
NC score	0.237666 (rank : 260)	θ value	θ > 10 (rank : 304)
Query Neighborhood Hits	276	Target Neighborhood Hits	343	Shared Neighborhood Hits	233
SwissProt Accessions	O15499	Gene names	GSCL
Domain Architecture
Description	Homeobox protein goosecoid-like (GSC-2).

HESX1_HUMAN
NC score	0.236413 (rank : 261)	θ value	θ > 10 (rank : 305)
Query Neighborhood Hits	276	Target Neighborhood Hits	326	Shared Neighborhood Hits	225
SwissProt Accessions	Q9UBX0, Q99667	Gene names	HESX1, HANF
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (hAnf).

ZHX3_HUMAN
NC score	0.236264 (rank : 262)	θ value	0.0563607 (rank : 75)
Query Neighborhood Hits	276	Target Neighborhood Hits	331	Shared Neighborhood Hits	162
SwissProt Accessions	Q9H4I2, O43145	Gene names	ZHX3, KIAA0395, TIX1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

PRRX2_HUMAN
NC score	0.235558 (rank : 263)	θ value	θ > 10 (rank : 368)
Query Neighborhood Hits	276	Target Neighborhood Hits	348	Shared Neighborhood Hits	237
SwissProt Accessions	Q99811, Q9UIB3	Gene names	PRRX2, PMX2, PRX2
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Paired-related homeobox protein 2).

SHOX_HUMAN
NC score	0.234648 (rank : 264)	θ value	θ > 10 (rank : 372)
Query Neighborhood Hits	276	Target Neighborhood Hits	363	Shared Neighborhood Hits	234
SwissProt Accessions	O15266, O00412, O00413, O15267	Gene names	SHOX, PHOG
Domain Architecture
Description	Short stature homeobox protein (Short stature homeobox-containing protein) (Pseudoautosomal homeobox-containing osteogenic protein).

GSCL_MOUSE
NC score	0.233204 (rank : 265)	θ value	8.99809 (rank : 265)
Query Neighborhood Hits	276	Target Neighborhood Hits	339	Shared Neighborhood Hits	233
SwissProt Accessions	P56916	Gene names	Gscl
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid-like (GSC-2).

DUX1_HUMAN
NC score	0.230961 (rank : 266)	θ value	θ > 10 (rank : 294)
Query Neighborhood Hits	276	Target Neighborhood Hits	330	Shared Neighborhood Hits	238
SwissProt Accessions	O43812	Gene names	DUX1
Domain Architecture	No domain graphic available
Description	Double homeobox protein 1.

PAX3_HUMAN
NC score	0.230317 (rank : 267)	θ value	3.0926 (rank : 220)
Query Neighborhood Hits	276	Target Neighborhood Hits	513	Shared Neighborhood Hits	245
SwissProt Accessions	P23760, Q16448	Gene names	PAX3, HUP2
Domain Architecture
Description	Paired box protein Pax-3 (HUP2).

PAX3_MOUSE
NC score	0.230024 (rank : 268)	θ value	3.0926 (rank : 221)
Query Neighborhood Hits	276	Target Neighborhood Hits	478	Shared Neighborhood Hits	245
SwissProt Accessions	P24610, Q3UFQ9, Q8BRE7, Q9CXI6	Gene names	Pax3, Pax-3
Domain Architecture
Description	Paired box protein Pax-3.

SHOX2_MOUSE
NC score	0.229906 (rank : 269)	θ value	θ > 10 (rank : 371)
Query Neighborhood Hits	276	Target Neighborhood Hits	348	Shared Neighborhood Hits	230
SwissProt Accessions	P70390, P70369	Gene names	Shox2, Og12x, Prx3
Domain Architecture
Description	Short stature homeobox protein 2 (Homeobox protein Og12X) (OG-12) (Paired family homeodomain protein Prx3).

SHOX2_HUMAN
NC score	0.229689 (rank : 270)	θ value	θ > 10 (rank : 370)
Query Neighborhood Hits	276	Target Neighborhood Hits	353	Shared Neighborhood Hits	230
SwissProt Accessions	O60902, O60465, O60467, O60903	Gene names	SHOX2, OG12X, SHOT
Domain Architecture
Description	Short stature homeobox protein 2 (Paired-related homeobox protein SHOT) (Homeobox protein Og12X).

CHX10_HUMAN
NC score	0.229448 (rank : 271)	θ value	5.27518 (rank : 238)
Query Neighborhood Hits	276	Target Neighborhood Hits	340	Shared Neighborhood Hits	228
SwissProt Accessions	P58304	Gene names	CHX10, VSX2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

CHX10_MOUSE
NC score	0.229432 (rank : 272)	θ value	5.27518 (rank : 239)
Query Neighborhood Hits	276	Target Neighborhood Hits	340	Shared Neighborhood Hits	228
SwissProt Accessions	Q61412	Gene names	Chx10, Vsx2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

DUX5_HUMAN
NC score	0.229418 (rank : 273)	θ value	θ > 10 (rank : 298)
Query Neighborhood Hits	276	Target Neighborhood Hits	330	Shared Neighborhood Hits	238
SwissProt Accessions	Q96PT3	Gene names	DUX5
Domain Architecture	No domain graphic available
Description	Double homeobox protein 5.

VSX1_HUMAN
NC score	0.228724 (rank : 274)	θ value	1.81305 (rank : 188)
Query Neighborhood Hits	276	Target Neighborhood Hits	344	Shared Neighborhood Hits	226
SwissProt Accessions	Q9NZR4, Q5TF40, Q5TF41, Q9HCU3, Q9NU27	Gene names	VSX1, RINX
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

CRX_HUMAN
NC score	0.228715 (rank : 275)	θ value	θ > 10 (rank : 287)
Query Neighborhood Hits	276	Target Neighborhood Hits	360	Shared Neighborhood Hits	235
SwissProt Accessions	O43186	Gene names	CRX, CORD2
Domain Architecture
Description	Cone-rod homeobox protein.

CRX_MOUSE
NC score	0.225794 (rank : 276)	θ value	θ > 10 (rank : 288)
Query Neighborhood Hits	276	Target Neighborhood Hits	359	Shared Neighborhood Hits	231
SwissProt Accessions	O54751	Gene names	Crx
Domain Architecture
Description	Cone-rod homeobox protein.

OTX1_HUMAN
NC score	0.225234 (rank : 277)	θ value	θ > 10 (rank : 344)
Query Neighborhood Hits	276	Target Neighborhood Hits	379	Shared Neighborhood Hits	232
SwissProt Accessions	P32242, Q53TG6	Gene names	OTX1
Domain Architecture
Description	Homeobox protein OTX1.

DUX4_HUMAN
NC score	0.224109 (rank : 278)	θ value	θ > 10 (rank : 297)
Query Neighborhood Hits	276	Target Neighborhood Hits	403	Shared Neighborhood Hits	239
SwissProt Accessions	Q9UBX2	Gene names	DUX4, DUX10
Domain Architecture	No domain graphic available
Description	Double homeobox protein 4 (Double homeobox protein 10) (Double homeobox protein 4/10).

OTX1_MOUSE
NC score	0.222433 (rank : 279)	θ value	θ > 10 (rank : 345)
Query Neighborhood Hits	276	Target Neighborhood Hits	372	Shared Neighborhood Hits	233
SwissProt Accessions	P80205	Gene names	Otx1, Otx-1
Domain Architecture
Description	Homeobox protein OTX1.

DUX3_HUMAN
NC score	0.220691 (rank : 280)	θ value	θ > 10 (rank : 296)
Query Neighborhood Hits	276	Target Neighborhood Hits	312	Shared Neighborhood Hits	232
SwissProt Accessions	Q96PT4, Q9UND2	Gene names	DUX3
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 3.

VSX1_MOUSE
NC score	0.217654 (rank : 281)	θ value	θ > 10 (rank : 373)
Query Neighborhood Hits	276	Target Neighborhood Hits	356	Shared Neighborhood Hits	224
SwissProt Accessions	Q91V10	Gene names	Vsx1, Rinx
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

PAX6_HUMAN
NC score	0.216116 (rank : 282)	θ value	1.81305 (rank : 183)
Query Neighborhood Hits	276	Target Neighborhood Hits	383	Shared Neighborhood Hits	236
SwissProt Accessions	P26367, Q6N006, Q99413	Gene names	PAX6, AN2
Domain Architecture
Description	Paired box protein Pax-6 (Oculorhombin) (Aniridia type II protein).

PAX6_MOUSE
NC score	0.216116 (rank : 283)	θ value	1.81305 (rank : 184)
Query Neighborhood Hits	276	Target Neighborhood Hits	383	Shared Neighborhood Hits	236
SwissProt Accessions	P63015, P32117, P70601, Q62222, Q64037, Q8CEI5, Q8VDB5, Q921Q8	Gene names	Pax6, Pax-6, Sey
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-6 (Oculorhombin).

OTX2_MOUSE
NC score	0.212639 (rank : 284)	θ value	θ > 10 (rank : 347)
Query Neighborhood Hits	276	Target Neighborhood Hits	345	Shared Neighborhood Hits	230
SwissProt Accessions	P80206	Gene names	Otx2, Otx-2
Domain Architecture
Description	Homeobox protein OTX2.

OTX2_HUMAN
NC score	0.211611 (rank : 285)	θ value	θ > 10 (rank : 346)
Query Neighborhood Hits	276	Target Neighborhood Hits	341	Shared Neighborhood Hits	227
SwissProt Accessions	P32243, Q6GTV3, Q9HAW3, Q9P2R1	Gene names	OTX2
Domain Architecture
Description	Homeobox protein OTX2.

PO6F1_HUMAN
NC score	0.190012 (rank : 286)	θ value	0.47712 (rank : 122)
Query Neighborhood Hits	276	Target Neighborhood Hits	370	Shared Neighborhood Hits	231
SwissProt Accessions	Q14863	Gene names	POU6F1, BRN5, MPOU, TCFB1
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (mPOU homeobox protein) (Brain-specific homeobox/POU domain protein 5) (Brain-5) (Brn-5 protein).

PO6F1_MOUSE
NC score	0.182605 (rank : 287)	θ value	0.47712 (rank : 123)
Query Neighborhood Hits	276	Target Neighborhood Hits	581	Shared Neighborhood Hits	232
SwissProt Accessions	Q07916, Q91XK3	Gene names	Pou6f1, Emb
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (Octamer-binding transcription factor EMB) (Transcription regulatory protein MCP-1).

LHX4_MOUSE
NC score	0.181306 (rank : 288)	θ value	0.47712 (rank : 118)
Query Neighborhood Hits	276	Target Neighborhood Hits	457	Shared Neighborhood Hits	243
SwissProt Accessions	P53776, O08916, Q9R280	Gene names	Lhx4, Gsh-4, Gsh4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

LHX4_HUMAN
NC score	0.180944 (rank : 289)	θ value	0.365318 (rank : 115)
Query Neighborhood Hits	276	Target Neighborhood Hits	455	Shared Neighborhood Hits	243
SwissProt Accessions	Q969G2, Q8NHE0, Q8TCJ1, Q8WWX2, Q969W2	Gene names	LHX4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

ZHX1_MOUSE
NC score	0.180171 (rank : 290)	θ value	1.81305 (rank : 190)
Query Neighborhood Hits	276	Target Neighborhood Hits	334	Shared Neighborhood Hits	162
SwissProt Accessions	P70121, Q8BQ68, Q8C6T4, Q8CJG3	Gene names	Zhx1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

ZHX1_HUMAN
NC score	0.179181 (rank : 291)	θ value	1.81305 (rank : 189)
Query Neighborhood Hits	276	Target Neighborhood Hits	307	Shared Neighborhood Hits	156
SwissProt Accessions	Q9UKY1, Q8IWD8	Gene names	ZHX1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

ZFHX2_HUMAN
NC score	0.176993 (rank : 292)	θ value	4.03905 (rank : 235)
Query Neighborhood Hits	276	Target Neighborhood Hits	1178	Shared Neighborhood Hits	232
SwissProt Accessions	Q9C0A1	Gene names	ZFHX2, KIAA1762
Domain Architecture
Description	Zinc finger homeobox protein 2.

PO6F2_MOUSE
NC score	0.165823 (rank : 293)	θ value	2.36792 (rank : 201)
Query Neighborhood Hits	276	Target Neighborhood Hits	639	Shared Neighborhood Hits	224
SwissProt Accessions	Q8BJI4	Gene names	Pou6f2
Domain Architecture	No domain graphic available
Description	POU domain, class 6, transcription factor 2.

LHX3_HUMAN
NC score	0.163594 (rank : 294)	θ value	8.99809 (rank : 269)
Query Neighborhood Hits	276	Target Neighborhood Hits	474	Shared Neighborhood Hits	248
SwissProt Accessions	Q9UBR4, Q9NZB5, Q9P0I8, Q9P0I9	Gene names	LHX3
Domain Architecture
Description	LIM/homeobox protein Lhx3.

ZHX2_HUMAN
NC score	0.162771 (rank : 295)	θ value	2.36792 (rank : 205)
Query Neighborhood Hits	276	Target Neighborhood Hits	347	Shared Neighborhood Hits	140
SwissProt Accessions	Q9Y6X8	Gene names	ZHX2, AFR1, KIAA0854, RAF
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

ZHX2_MOUSE
NC score	0.161107 (rank : 296)	θ value	2.36792 (rank : 206)
Query Neighborhood Hits	276	Target Neighborhood Hits	435	Shared Neighborhood Hits	139
SwissProt Accessions	Q8C0C0	Gene names	Zhx2, Afr1, Raf
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

PO6F2_HUMAN
NC score	0.157117 (rank : 297)	θ value	θ > 10 (rank : 367)
Query Neighborhood Hits	276	Target Neighborhood Hits	618	Shared Neighborhood Hits	220
SwissProt Accessions	P78424, P78425, Q75ME8, Q86UM6, Q9UDS7	Gene names	POU6F2, RPF1
Domain Architecture
Description	POU domain, class 6, transcription factor 2 (Retina-derived POU-domain factor 1) (RPF-1).

LHX2_MOUSE
NC score	0.144348 (rank : 298)	θ value	θ > 10 (rank : 327)
Query Neighborhood Hits	276	Target Neighborhood Hits	431	Shared Neighborhood Hits	240
SwissProt Accessions	Q9Z0S2	Gene names	Lhx2
Domain Architecture
Description	LIM/homeobox protein Lhx2.

LHX2_HUMAN
NC score	0.144053 (rank : 299)	θ value	θ > 10 (rank : 326)
Query Neighborhood Hits	276	Target Neighborhood Hits	432	Shared Neighborhood Hits	240
SwissProt Accessions	P50458, O95860, Q8N1Z3	Gene names	LHX2, LH2
Domain Architecture
Description	LIM/homeobox protein Lhx2 (Homeobox protein LH-2).

LHX3_MOUSE
NC score	0.142819 (rank : 300)	θ value	θ > 10 (rank : 328)
Query Neighborhood Hits	276	Target Neighborhood Hits	451	Shared Neighborhood Hits	240
SwissProt Accessions	P50481, Q61800, Q61801	Gene names	Lhx3, Lim-3, Lim3, Plim
Domain Architecture
Description	LIM/homeobox protein Lhx3 (Homeobox protein LIM-3) (Homeobox protein P-LIM) (LIM homeobox protein 3).

PO2F2_MOUSE
NC score	0.142547 (rank : 301)	θ value	1.06291 (rank : 163)
Query Neighborhood Hits	276	Target Neighborhood Hits	353	Shared Neighborhood Hits	218
SwissProt Accessions	Q00196, Q00197, Q00198, Q00199, Q00200, Q00201, Q05882, Q61995, Q61996, Q64245	Gene names	Pou2f2, Oct2, Otf2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

PO2F2_HUMAN
NC score	0.142414 (rank : 302)	θ value	1.06291 (rank : 162)
Query Neighborhood Hits	276	Target Neighborhood Hits	379	Shared Neighborhood Hits	220
SwissProt Accessions	P09086, Q16648, Q9BRS4	Gene names	POU2F2, OCT2, OTF2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

PO2F3_MOUSE
NC score	0.140318 (rank : 303)	θ value	1.38821 (rank : 173)
Query Neighborhood Hits	276	Target Neighborhood Hits	328	Shared Neighborhood Hits	220
SwissProt Accessions	P31362	Gene names	Pou2f3, Epoc1, Oct11, Otf-11, Otf11
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Epoc-1).

LHX5_HUMAN
NC score	0.139830 (rank : 304)	θ value	θ > 10 (rank : 329)
Query Neighborhood Hits	276	Target Neighborhood Hits	453	Shared Neighborhood Hits	237
SwissProt Accessions	Q9H2C1	Gene names	LHX5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

ATBF1_HUMAN
NC score	0.139266 (rank : 305)	θ value	1.06291 (rank : 142)
Query Neighborhood Hits	276	Target Neighborhood Hits	1547	Shared Neighborhood Hits	253
SwissProt Accessions	Q15911, O15101, Q13719	Gene names	ATBF1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

LHX5_MOUSE
NC score	0.138973 (rank : 306)	θ value	θ > 10 (rank : 330)
Query Neighborhood Hits	276	Target Neighborhood Hits	456	Shared Neighborhood Hits	237
SwissProt Accessions	P61375, P50459	Gene names	Lhx5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

LHX9_HUMAN
NC score	0.138118 (rank : 307)	θ value	θ > 10 (rank : 335)
Query Neighborhood Hits	276	Target Neighborhood Hits	444	Shared Neighborhood Hits	237
SwissProt Accessions	Q9NQ69, Q5VUE3, Q9BYU6, Q9NQ70	Gene names	LHX9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

LHX1_MOUSE
NC score	0.137476 (rank : 308)	θ value	θ > 10 (rank : 325)
Query Neighborhood Hits	276	Target Neighborhood Hits	453	Shared Neighborhood Hits	237
SwissProt Accessions	P63006, P36199	Gene names	Lhx1, Lim-1, Lim1
Domain Architecture	No domain graphic available
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

PO2F3_HUMAN
NC score	0.137388 (rank : 309)	θ value	1.38821 (rank : 172)
Query Neighborhood Hits	276	Target Neighborhood Hits	319	Shared Neighborhood Hits	218
SwissProt Accessions	Q9UKI9, Q9UKR7, Q9Y504	Gene names	POU2F3, OTF11, PLA1
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Transcription factor Skn-1) (PLA-1 protein).

ATBF1_MOUSE
NC score	0.137355 (rank : 310)	θ value	1.06291 (rank : 143)
Query Neighborhood Hits	276	Target Neighborhood Hits	1841	Shared Neighborhood Hits	253
SwissProt Accessions	Q61329	Gene names	Atbf1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

LHX9_MOUSE
NC score	0.137242 (rank : 311)	θ value	θ > 10 (rank : 336)
Query Neighborhood Hits	276	Target Neighborhood Hits	445	Shared Neighborhood Hits	237
SwissProt Accessions	Q9WUH2, Q9QYQ5, Q9QYQ6, Q9QZ00, Q9WU44	Gene names	Lhx9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

LHX1_HUMAN
NC score	0.136997 (rank : 312)	θ value	θ > 10 (rank : 324)
Query Neighborhood Hits	276	Target Neighborhood Hits	453	Shared Neighborhood Hits	238
SwissProt Accessions	P48742, Q3MIW0	Gene names	LHX1, LIM1
Domain Architecture
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

PO2F1_HUMAN
NC score	0.134807 (rank : 313)	θ value	3.0926 (rank : 222)
Query Neighborhood Hits	276	Target Neighborhood Hits	426	Shared Neighborhood Hits	230
SwissProt Accessions	P14859, Q5TBT7, Q6PK46, Q8NEU9, Q9BPV1	Gene names	POU2F1, OCT1, OTF1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

LMX1A_HUMAN
NC score	0.132778 (rank : 314)	θ value	6.88961 (rank : 254)
Query Neighborhood Hits	276	Target Neighborhood Hits	406	Shared Neighborhood Hits	229
SwissProt Accessions	Q8TE12, Q8TE11	Gene names	LMX1A
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

LMX1A_MOUSE
NC score	0.129921 (rank : 315)	θ value	θ > 10 (rank : 337)
Query Neighborhood Hits	276	Target Neighborhood Hits	405	Shared Neighborhood Hits	227
SwissProt Accessions	Q9JKU8	Gene names	Lmx1a
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

LMX1B_HUMAN
NC score	0.127590 (rank : 316)	θ value	θ > 10 (rank : 338)
Query Neighborhood Hits	276	Target Neighborhood Hits	404	Shared Neighborhood Hits	223
SwissProt Accessions	O60663, O75463	Gene names	LMX1B
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

LMX1B_MOUSE
NC score	0.125709 (rank : 317)	θ value	θ > 10 (rank : 339)
Query Neighborhood Hits	276	Target Neighborhood Hits	394	Shared Neighborhood Hits	222
SwissProt Accessions	O88609	Gene names	Lmx1b
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

LHX61_HUMAN
NC score	0.120765 (rank : 318)	θ value	θ > 10 (rank : 331)
Query Neighborhood Hits	276	Target Neighborhood Hits	412	Shared Neighborhood Hits	225
SwissProt Accessions	Q9UPM6, Q5T7S8, Q9NTK3, Q9UPM5	Gene names	LHX6, LHX6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1 (Lhx6).

DUX2_HUMAN
NC score	0.119562 (rank : 319)	θ value	θ > 10 (rank : 295)
Query Neighborhood Hits	276	Target Neighborhood Hits	173	Shared Neighborhood Hits	121
SwissProt Accessions	O75505	Gene names	DUX2
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 2.

ISL2_MOUSE
NC score	0.118519 (rank : 320)	θ value	θ > 10 (rank : 323)
Query Neighborhood Hits	276	Target Neighborhood Hits	426	Shared Neighborhood Hits	225
SwissProt Accessions	Q9CXV0	Gene names	Isl2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

LHX6_MOUSE
NC score	0.117769 (rank : 321)	θ value	θ > 10 (rank : 333)
Query Neighborhood Hits	276	Target Neighborhood Hits	399	Shared Neighborhood Hits	221
SwissProt Accessions	O88706	Gene names	Lhx6
Domain Architecture
Description	LIM/homeobox protein Lhx6.

ISL2_HUMAN
NC score	0.116243 (rank : 322)	θ value	θ > 10 (rank : 322)
Query Neighborhood Hits	276	Target Neighborhood Hits	435	Shared Neighborhood Hits	229
SwissProt Accessions	Q96A47	Gene names	ISL2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

LHX8_MOUSE
NC score	0.114453 (rank : 323)	θ value	θ > 10 (rank : 334)
Query Neighborhood Hits	276	Target Neighborhood Hits	406	Shared Neighborhood Hits	218
SwissProt Accessions	O35652, O70163, O88707	Gene names	Lhx8, Lhx7
Domain Architecture
Description	LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3).

PO2F1_MOUSE
NC score	0.113387 (rank : 324)	θ value	θ > 10 (rank : 352)
Query Neighborhood Hits	276	Target Neighborhood Hits	408	Shared Neighborhood Hits	221
SwissProt Accessions	P25425, Q61994, Q63891, Q6Y681, Q7TSD0, Q8BT04, Q8K570, Q99JH0, Q9WTZ4, Q9WTZ5, Q9WTZ6	Gene names	Pou2f1, Oct-1, Otf-1, Otf1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

ISL1_HUMAN
NC score	0.112166 (rank : 325)	θ value	θ > 10 (rank : 320)
Query Neighborhood Hits	276	Target Neighborhood Hits	421	Shared Neighborhood Hits	222
SwissProt Accessions	P61371, P20663, P47894	Gene names	ISL1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

ISL1_MOUSE
NC score	0.112166 (rank : 326)	θ value	θ > 10 (rank : 321)
Query Neighborhood Hits	276	Target Neighborhood Hits	421	Shared Neighborhood Hits	222
SwissProt Accessions	P61372, P20663, P47894, Q812D8	Gene names	Isl1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

LHX61_MOUSE
NC score	0.106922 (rank : 327)	θ value	θ > 10 (rank : 332)
Query Neighborhood Hits	276	Target Neighborhood Hits	396	Shared Neighborhood Hits	207
SwissProt Accessions	Q9R1R0, Q9R1R1	Gene names	Lhx6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1.

CUTL2_MOUSE
NC score	0.103355 (rank : 328)	θ value	θ > 10 (rank : 292)
Query Neighborhood Hits	276	Target Neighborhood Hits	771	Shared Neighborhood Hits	131
SwissProt Accessions	P70298	Gene names	Cutl2
Domain Architecture
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

PIT1_MOUSE
NC score	0.099057 (rank : 329)	θ value	θ > 10 (rank : 351)
Query Neighborhood Hits	276	Target Neighborhood Hits	313	Shared Neighborhood Hits	207
SwissProt Accessions	Q00286	Gene names	Pou1f1, Pit-1, Pit1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

CUTL2_HUMAN
NC score	0.098539 (rank : 330)	θ value	θ > 10 (rank : 291)
Query Neighborhood Hits	276	Target Neighborhood Hits	906	Shared Neighborhood Hits	141
SwissProt Accessions	O14529	Gene names	CUTL2, KIAA0293
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

PIT1_HUMAN
NC score	0.095107 (rank : 331)	θ value	θ > 10 (rank : 350)
Query Neighborhood Hits	276	Target Neighborhood Hits	292	Shared Neighborhood Hits	190
SwissProt Accessions	P28069, O75757, Q15132, Q15133, Q9UEL3	Gene names	POU1F1, GHF1, PIT1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

HMBX1_HUMAN
NC score	0.090698 (rank : 332)	θ value	θ > 10 (rank : 308)
Query Neighborhood Hits	276	Target Neighborhood Hits	118	Shared Neighborhood Hits	82
SwissProt Accessions	Q6NT76, Q3Y6P1, Q96GS5, Q9H701	Gene names	HMBOX1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

PO4F2_MOUSE
NC score	0.088480 (rank : 333)	θ value	θ > 10 (rank : 362)
Query Neighborhood Hits	276	Target Neighborhood Hits	312	Shared Neighborhood Hits	207
SwissProt Accessions	Q63934, Q63954	Gene names	Pou4f2, Brn3b
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B) (Brn-3.2).

PO3F2_HUMAN
NC score	0.088407 (rank : 334)	θ value	8.99809 (rank : 273)
Query Neighborhood Hits	276	Target Neighborhood Hits	308	Shared Neighborhood Hits	196
SwissProt Accessions	P20265, Q14960, Q86V54, Q9UJL0	Gene names	POU3F2, BRN2, OCT7, OTF7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

PO4F2_HUMAN
NC score	0.088406 (rank : 335)	θ value	θ > 10 (rank : 361)
Query Neighborhood Hits	276	Target Neighborhood Hits	310	Shared Neighborhood Hits	207
SwissProt Accessions	Q12837, Q13883, Q14987	Gene names	POU4F2, BRN3B
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B).

PO3F2_MOUSE
NC score	0.088404 (rank : 336)	θ value	8.99809 (rank : 274)
Query Neighborhood Hits	276	Target Neighborhood Hits	313	Shared Neighborhood Hits	196
SwissProt Accessions	P31360	Gene names	Pou3f2, Brn-2, Brn2, Otf7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

PO4F1_MOUSE
NC score	0.088386 (rank : 337)	θ value	θ > 10 (rank : 360)
Query Neighborhood Hits	276	Target Neighborhood Hits	345	Shared Neighborhood Hits	209
SwissProt Accessions	P17208	Gene names	Pou4f1, Brn-3, Brn3, Brn3a
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Brn-3.0).

PO4F3_MOUSE
NC score	0.088089 (rank : 338)	θ value	θ > 10 (rank : 364)
Query Neighborhood Hits	276	Target Neighborhood Hits	311	Shared Neighborhood Hits	208
SwissProt Accessions	Q63955	Gene names	Pou4f3, Brn-3c, Brn3c
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

PO4F3_HUMAN
NC score	0.087841 (rank : 339)	θ value	θ > 10 (rank : 363)
Query Neighborhood Hits	276	Target Neighborhood Hits	307	Shared Neighborhood Hits	208
SwissProt Accessions	Q15319, O60557	Gene names	POU4F3, BRN3C
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

HOP_MOUSE
NC score	0.087796 (rank : 340)	θ value	θ > 10 (rank : 313)
Query Neighborhood Hits	276	Target Neighborhood Hits	102	Shared Neighborhood Hits	63
SwissProt Accessions	Q8R1H0, Q8C1N5, Q8CJ22	Gene names	Hop, Hod, Ob1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Homeobox-only protein) (Odd homeobox protein 1) (mOB1).

PO4F1_HUMAN
NC score	0.087424 (rank : 341)	θ value	θ > 10 (rank : 359)
Query Neighborhood Hits	276	Target Neighborhood Hits	342	Shared Neighborhood Hits	209
SwissProt Accessions	Q01851, Q14986, Q15318	Gene names	POU4F1, BRN3A, RDC1
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Oct-T1) (Homeobox/POU domain protein RDC-1).

PO5F1_HUMAN
NC score	0.086803 (rank : 342)	θ value	θ > 10 (rank : 365)
Query Neighborhood Hits	276	Target Neighborhood Hits	321	Shared Neighborhood Hits	196
SwissProt Accessions	Q01860, P31359, Q15167, Q15168, Q16422	Gene names	POU5F1, OCT3, OCT4, OTF3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4).

PO3F3_MOUSE
NC score	0.086782 (rank : 343)	θ value	θ > 10 (rank : 356)
Query Neighborhood Hits	276	Target Neighborhood Hits	308	Shared Neighborhood Hits	194
SwissProt Accessions	P31361	Gene names	Pou3f3, Brn-1, Brn1, Otf8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

PO3F3_HUMAN
NC score	0.086779 (rank : 344)	θ value	θ > 10 (rank : 355)
Query Neighborhood Hits	276	Target Neighborhood Hits	311	Shared Neighborhood Hits	194
SwissProt Accessions	P20264, P78379	Gene names	POU3F3, BRN1, OTF8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

PO5F1_MOUSE
NC score	0.083503 (rank : 345)	θ value	θ > 10 (rank : 366)
Query Neighborhood Hits	276	Target Neighborhood Hits	305	Shared Neighborhood Hits	186
SwissProt Accessions	P20263, Q63843	Gene names	Pou5f1, Oct-3, Oct-4, Otf-3, Otf3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4) (NF-A3).

HMBX1_MOUSE
NC score	0.079238 (rank : 346)	θ value	θ > 10 (rank : 309)
Query Neighborhood Hits	276	Target Neighborhood Hits	117	Shared Neighborhood Hits	81
SwissProt Accessions	Q8BJA3, Q80WC2, Q8BWE7, Q99LV1	Gene names	Hmbox1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

HOP_HUMAN
NC score	0.078135 (rank : 347)	θ value	θ > 10 (rank : 312)
Query Neighborhood Hits	276	Target Neighborhood Hits	107	Shared Neighborhood Hits	64
SwissProt Accessions	Q9BPY8, Q8N0V6, Q96CI1	Gene names	HOP, HOD, LAGY, NECC1, OB1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Lung cancer-associated Y protein) (Odd homeobox protein 1) (Not expressed in choriocarcinoma protein 1).

PO3F1_MOUSE
NC score	0.073047 (rank : 348)	θ value	θ > 10 (rank : 354)
Query Neighborhood Hits	276	Target Neighborhood Hits	261	Shared Neighborhood Hits	162
SwissProt Accessions	P21952	Gene names	Pou3f1, Oct6, Otf-6, Otf6, Scip
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

PO3F1_HUMAN
NC score	0.072254 (rank : 349)	θ value	θ > 10 (rank : 353)
Query Neighborhood Hits	276	Target Neighborhood Hits	256	Shared Neighborhood Hits	162
SwissProt Accessions	Q03052	Gene names	POU3F1, OCT6, OTF6
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

PO3F4_HUMAN
NC score	0.069602 (rank : 350)	θ value	θ > 10 (rank : 357)
Query Neighborhood Hits	276	Target Neighborhood Hits	297	Shared Neighborhood Hits	167
SwissProt Accessions	P49335, Q5H9G9, Q99410	Gene names	POU3F4, BRN4, OTF9
Domain Architecture
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

PO3F4_MOUSE
NC score	0.068537 (rank : 351)	θ value	θ > 10 (rank : 358)
Query Neighborhood Hits	276	Target Neighborhood Hits	281	Shared Neighborhood Hits	166
SwissProt Accessions	P62515, P25216	Gene names	Pou3f4, Brn-4, Brn4, Otf9
Domain Architecture	No domain graphic available
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

ONEC2_HUMAN
NC score	0.066675 (rank : 352)	θ value	θ > 10 (rank : 342)
Query Neighborhood Hits	276	Target Neighborhood Hits	115	Shared Neighborhood Hits	55
SwissProt Accessions	O95948	Gene names	ONECUT2
Domain Architecture
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

ONEC2_MOUSE
NC score	0.065350 (rank : 353)	θ value	θ > 10 (rank : 343)
Query Neighborhood Hits	276	Target Neighborhood Hits	123	Shared Neighborhood Hits	54
SwissProt Accessions	Q6XBJ3	Gene names	Onecut2, Oc2
Domain Architecture	No domain graphic available
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

HNF6_HUMAN
NC score	0.065284 (rank : 354)	θ value	θ > 10 (rank : 310)
Query Neighborhood Hits	276	Target Neighborhood Hits	127	Shared Neighborhood Hits	58
SwissProt Accessions	Q9UBC0, Q99744, Q9UMR6	Gene names	ONECUT1, HNF6, HNF6A
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

HNF6_MOUSE
NC score	0.063731 (rank : 355)	θ value	θ > 10 (rank : 311)
Query Neighborhood Hits	276	Target Neighborhood Hits	124	Shared Neighborhood Hits	60
SwissProt Accessions	O08755	Gene names	Onecut1, Hnf6, Hnf6a
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

CUTL1_MOUSE
NC score	0.063544 (rank : 356)	θ value	θ > 10 (rank : 290)
Query Neighborhood Hits	276	Target Neighborhood Hits	1620	Shared Neighborhood Hits	164
SwissProt Accessions	P53564, O08994, P70301, Q571L6, Q91ZD2	Gene names	Cutl1, Cux, Cux1, Kiaa4047
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP) (Homeobox protein Cux).

ADNP_MOUSE
NC score	0.060700 (rank : 357)	θ value	0.279714 (rank : 97)
Query Neighborhood Hits	276	Target Neighborhood Hits	232	Shared Neighborhood Hits	26
SwissProt Accessions	Q9Z103	Gene names	Adnp
Domain Architecture
Description	Activity-dependent neuroprotector (Activity-dependent neuroprotective protein).

RHOX5_MOUSE
NC score	0.059014 (rank : 358)	θ value	θ > 10 (rank : 369)
Query Neighborhood Hits	276	Target Neighborhood Hits	69	Shared Neighborhood Hits	39
SwissProt Accessions	P52651	Gene names	Rhox5, Pem
Domain Architecture	No domain graphic available
Description	Homeobox protein Rhox5 (Reproductive homeobox on chromosome X 5) (Homeobox protein Pem) (Placenta and embryonic expression protein).

CUTL1_HUMAN
NC score	0.055615 (rank : 359)	θ value	θ > 10 (rank : 289)
Query Neighborhood Hits	276	Target Neighborhood Hits	1574	Shared Neighborhood Hits	160
SwissProt Accessions	P39880, Q6NYH4, Q9UEV5	Gene names	CUTL1
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP).

CP007_MOUSE
NC score	0.054697 (rank : 360)	θ value	0.0148317 (rank : 57)
Query Neighborhood Hits	276	Target Neighborhood Hits	231	Shared Neighborhood Hits	10
SwissProt Accessions	Q8C190, Q6PFD1	Gene names
Domain Architecture	No domain graphic available
Description	Uncharacterized protein C16orf7 homolog (5-day ovary-specific transcript 1 protein).

SAPS1_HUMAN
NC score	0.027027 (rank : 361)	θ value	0.813845 (rank : 141)
Query Neighborhood Hits	276	Target Neighborhood Hits	704	Shared Neighborhood Hits	20
SwissProt Accessions	Q9UPN7, Q504V2, Q6NVJ6, Q9BU97	Gene names	SAPS1, KIAA1115
Domain Architecture
Description	SAPS domain family member 1.

APXL_HUMAN
NC score	0.017615 (rank : 362)	θ value	1.38821 (rank : 168)
Query Neighborhood Hits	276	Target Neighborhood Hits	553	Shared Neighborhood Hits	10
SwissProt Accessions	Q13796	Gene names	APXL
Domain Architecture
Description	Apical-like protein (Protein APXL).

EDAR_HUMAN
NC score	0.012613 (rank : 363)	θ value	4.03905 (rank : 228)
Query Neighborhood Hits	276	Target Neighborhood Hits	84	Shared Neighborhood Hits	2
SwissProt Accessions	Q9UNE0, Q9UND9	Gene names	EDAR, DL
Domain Architecture
Description	Tumor necrosis factor receptor superfamily member EDAR precursor (Anhidrotic ectodysplasin receptor 1) (Ectodysplasin-A receptor) (EDA- A1 receptor) (Ectodermal dysplasia receptor) (Downless homolog).

KHDR3_MOUSE
NC score	0.012401 (rank : 364)	θ value	6.88961 (rank : 252)
Query Neighborhood Hits	276	Target Neighborhood Hits	26	Shared Neighborhood Hits	3
SwissProt Accessions	Q9R226, O88624	Gene names	Khdrbs3, Salp, Slm2
Domain Architecture	No domain graphic available
Description	KH domain-containing, RNA-binding, signal transduction-associated protein 3 (Sam68-like mammalian protein 2) (SLM-2) (RNA-binding protein Etoile).

MINT_MOUSE
NC score	0.012244 (rank : 365)	θ value	6.88961 (rank : 256)
Query Neighborhood Hits	276	Target Neighborhood Hits	1514	Shared Neighborhood Hits	28
SwissProt Accessions	Q62504, Q80TN9, Q99PS4, Q9QZW2	Gene names	Spen, Kiaa0929, Mint, Sharp
Domain Architecture
Description	Msx2-interacting protein (SPEN homolog) (SMART/HDAC1-associated repressor protein).

UBR1_MOUSE
NC score	0.010456 (rank : 366)	θ value	6.88961 (rank : 259)
Query Neighborhood Hits	276	Target Neighborhood Hits	52	Shared Neighborhood Hits	3
SwissProt Accessions	O70481, Q5BKR8, Q792M3, Q8BN40, Q8C5K3	Gene names	Ubr1
Domain Architecture	No domain graphic available
Description	Ubiquitin-protein ligase E3 component N-recognin-1 (EC 6.-.-.-) (Ubiquitin-protein ligase E3-alpha-1) (Ubiquitin-protein ligase E3- alpha-I).

PGCA_MOUSE
NC score	0.010384 (rank : 367)	θ value	0.365318 (rank : 116)
Query Neighborhood Hits	276	Target Neighborhood Hits	643	Shared Neighborhood Hits	13
SwissProt Accessions	Q61282, Q64021	Gene names	Agc1, Agc
Domain Architecture
Description	Aggrecan core protein precursor (Cartilage-specific proteoglycan core protein) (CSPCP).

OXRP_HUMAN
NC score	0.008474 (rank : 368)	θ value	1.81305 (rank : 182)
Query Neighborhood Hits	276	Target Neighborhood Hits	544	Shared Neighborhood Hits	14
SwissProt Accessions	Q9Y4L1	Gene names	HYOU1, ORP150
Domain Architecture
Description	150 kDa oxygen-regulated protein precursor (Orp150) (Hypoxia up- regulated 1).

LY10_HUMAN
NC score	0.005633 (rank : 369)	θ value	6.88961 (rank : 255)
Query Neighborhood Hits	276	Target Neighborhood Hits	151	Shared Neighborhood Hits	4
SwissProt Accessions	Q13342, Q13341, Q92881, Q96TG3	Gene names	SP140, LYSP100
Domain Architecture
Description	Nuclear body protein SP140 (Nuclear autoantigen Sp-140) (Speckled 140 kDa) (LYSp100 protein) (Lymphoid-restricted homolog of Sp100).

RB15B_MOUSE
NC score	0.004066 (rank : 370)	θ value	6.88961 (rank : 258)
Query Neighborhood Hits	276	Target Neighborhood Hits	284	Shared Neighborhood Hits	3
SwissProt Accessions	Q6PHZ5, Q8C6G2	Gene names	Rbm15b
Domain Architecture	No domain graphic available
Description	Putative RNA-binding protein 15B (RNA-binding motif protein 15B).

LRCH3_MOUSE
NC score	0.002872 (rank : 371)	θ value	3.0926 (rank : 217)
Query Neighborhood Hits	276	Target Neighborhood Hits	257	Shared Neighborhood Hits	2
SwissProt Accessions	Q8BVU0, Q3U222, Q3UZ74	Gene names	Lrch3
Domain Architecture	No domain graphic available
Description	Leucine-rich repeats and calponin homology domain-containing protein 3 precursor.

ZSCA1_HUMAN
NC score	-0.003792 (rank : 372)	θ value	1.81305 (rank : 191)
Query Neighborhood Hits	276	Target Neighborhood Hits	724	Shared Neighborhood Hits	5
SwissProt Accessions	Q8NBB4, Q6WLH8, Q86WS8	Gene names	ZSCAN1
Domain Architecture	No domain graphic available
Description	Zinc finger and SCAN domain-containing protein 1.

CP135_MOUSE
NC score	-0.006629 (rank : 373)	θ value	5.27518 (rank : 240)
Query Neighborhood Hits	276	Target Neighborhood Hits	1278	Shared Neighborhood Hits	2
SwissProt Accessions	Q6P5D4, Q6A030	Gene names	Cep135, Cep4, Kiaa0635
Domain Architecture	No domain graphic available
Description	Centrosomal protein of 135 kDa (Cep135 protein) (Centrosomal protein 4).