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Network neighborhood for query Sequence : ZHX3_HUMAN

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ZHX3_HUMAN
SwissProt Accessions	Q9H4I2, O43145	Gene names	ZHX3, KIAA0395, TIX1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).
Rank Plots	Jump to hits sorted by θ Jump to hits sorted by NC score

Hits sorted by θ

ZHX3_HUMAN
θ value	0 (rank : 1)	NC score	0.999962 (rank : 1)
Query Neighborhood Hits	331	Target Neighborhood Hits	331	Shared Neighborhood Hits	331
SwissProt Accessions	Q9H4I2, O43145	Gene names	ZHX3, KIAA0395, TIX1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

ZHX3_MOUSE
θ value	0 (rank : 2)	NC score	0.976353 (rank : 2)
Query Neighborhood Hits	331	Target Neighborhood Hits	321	Shared Neighborhood Hits	245
SwissProt Accessions	Q8C0Q2, Q80U14	Gene names	Zhx3, Kiaa0395, Tix1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

ZHX1_HUMAN
θ value	1.93155e-127 (rank : 3)	NC score	0.908799 (rank : 3)
Query Neighborhood Hits	331	Target Neighborhood Hits	307	Shared Neighborhood Hits	184
SwissProt Accessions	Q9UKY1, Q8IWD8	Gene names	ZHX1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

ZHX1_MOUSE
θ value	2.61056e-124 (rank : 4)	NC score	0.908777 (rank : 4)
Query Neighborhood Hits	331	Target Neighborhood Hits	334	Shared Neighborhood Hits	188
SwissProt Accessions	P70121, Q8BQ68, Q8C6T4, Q8CJG3	Gene names	Zhx1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

ZHX2_MOUSE
θ value	4.61877e-113 (rank : 5)	NC score	0.875832 (rank : 6)
Query Neighborhood Hits	331	Target Neighborhood Hits	435	Shared Neighborhood Hits	187
SwissProt Accessions	Q8C0C0	Gene names	Zhx2, Afr1, Raf
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

ZHX2_HUMAN
θ value	9.63072e-111 (rank : 6)	NC score	0.885296 (rank : 5)
Query Neighborhood Hits	331	Target Neighborhood Hits	347	Shared Neighborhood Hits	183
SwissProt Accessions	Q9Y6X8	Gene names	ZHX2, AFR1, KIAA0854, RAF
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

HOMEZ_HUMAN
θ value	6.40375e-22 (rank : 7)	NC score	0.616870 (rank : 7)
Query Neighborhood Hits	331	Target Neighborhood Hits	110	Shared Neighborhood Hits	49
SwissProt Accessions	Q8IX15, Q6P049, Q86XB6, Q9P2A5	Gene names	HOMEZ, KIAA1443
Domain Architecture
Description	Homeobox and leucine zipper protein Homez (Homeodomain leucine zipper- containing factor).

HOMEZ_MOUSE
θ value	2.06002e-20 (rank : 8)	NC score	0.603832 (rank : 8)
Query Neighborhood Hits	331	Target Neighborhood Hits	61	Shared Neighborhood Hits	20
SwissProt Accessions	Q80W88	Gene names	Homez, Kiaa1443
Domain Architecture
Description	Homeobox and leucine zipper protein Homez (Homeodomain leucine zipper- containing factor).

ATBF1_MOUSE
θ value	1.87187e-05 (rank : 9)	NC score	0.251579 (rank : 46)
Query Neighborhood Hits	331	Target Neighborhood Hits	1841	Shared Neighborhood Hits	283
SwissProt Accessions	Q61329	Gene names	Atbf1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

ATBF1_HUMAN
θ value	2.44474e-05 (rank : 10)	NC score	0.255627 (rank : 40)
Query Neighborhood Hits	331	Target Neighborhood Hits	1547	Shared Neighborhood Hits	284
SwissProt Accessions	Q15911, O15101, Q13719	Gene names	ATBF1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

PROP1_HUMAN
θ value	5.44631e-05 (rank : 11)	NC score	0.309459 (rank : 9)
Query Neighborhood Hits	331	Target Neighborhood Hits	354	Shared Neighborhood Hits	216
SwissProt Accessions	O75360	Gene names	PROP1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

SIX4_HUMAN
θ value	9.29e-05 (rank : 12)	NC score	0.306890 (rank : 10)
Query Neighborhood Hits	331	Target Neighborhood Hits	342	Shared Neighborhood Hits	203
SwissProt Accessions	Q9UIU6	Gene names	SIX4
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4).

SIX4_MOUSE
θ value	9.29e-05 (rank : 13)	NC score	0.305086 (rank : 11)
Query Neighborhood Hits	331	Target Neighborhood Hits	341	Shared Neighborhood Hits	201
SwissProt Accessions	Q61321, Q61322, Q61323	Gene names	Six4, Arec3
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4) (Skeletal muscle-specific ARE-binding protein AREC3).

ZN507_HUMAN
θ value	9.29e-05 (rank : 14)	NC score	0.058146 (rank : 379)
Query Neighborhood Hits	331	Target Neighborhood Hits	739	Shared Neighborhood Hits	54
SwissProt Accessions	Q8TCN5	Gene names	ZNF507
Domain Architecture	No domain graphic available
Description	Zinc finger protein 507.

NKX61_HUMAN
θ value	0.000461057 (rank : 15)	NC score	0.233256 (rank : 96)
Query Neighborhood Hits	331	Target Neighborhood Hits	431	Shared Neighborhood Hits	218
SwissProt Accessions	P78426	Gene names	NKX6-1, NKX6A
Domain Architecture
Description	Homeobox protein Nkx-6.1.

NKX61_MOUSE
θ value	0.000461057 (rank : 16)	NC score	0.234781 (rank : 89)
Query Neighborhood Hits	331	Target Neighborhood Hits	439	Shared Neighborhood Hits	217
SwissProt Accessions	Q99MA9, Q9ERQ7	Gene names	Nkx6-1, Nkx6.1, Nkx6a
Domain Architecture
Description	Homeobox protein Nkx-6.1.

IRX2_HUMAN
θ value	0.000786445 (rank : 17)	NC score	0.268176 (rank : 21)
Query Neighborhood Hits	331	Target Neighborhood Hits	358	Shared Neighborhood Hits	142
SwissProt Accessions	Q9BZI1, Q7Z2I7	Gene names	IRX2, IRXA2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

PROP1_MOUSE
θ value	0.00102713 (rank : 18)	NC score	0.300921 (rank : 12)
Query Neighborhood Hits	331	Target Neighborhood Hits	361	Shared Neighborhood Hits	215
SwissProt Accessions	P97458	Gene names	Prop1, Prop-1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

IRX3_HUMAN
θ value	0.00175202 (rank : 19)	NC score	0.262348 (rank : 34)
Query Neighborhood Hits	331	Target Neighborhood Hits	342	Shared Neighborhood Hits	145
SwissProt Accessions	P78415, Q7Z4A4, Q7Z4A5, Q8IVC6	Gene names	IRX3, IRXB1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

IRX3_MOUSE
θ value	0.00175202 (rank : 20)	NC score	0.262423 (rank : 33)
Query Neighborhood Hits	331	Target Neighborhood Hits	303	Shared Neighborhood Hits	141
SwissProt Accessions	P81067	Gene names	Irx3, Irxb1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

CT2NL_HUMAN
θ value	0.00390308 (rank : 21)	NC score	0.026828 (rank : 422)
Query Neighborhood Hits	331	Target Neighborhood Hits	1059	Shared Neighborhood Hits	26
SwissProt Accessions	Q9P2B4, Q96B40	Gene names	CTTNBP2NL, KIAA1433
Domain Architecture	No domain graphic available
Description	CTTNBP2 N-terminal-like protein.

IRX1_HUMAN
θ value	0.00390308 (rank : 22)	NC score	0.250252 (rank : 50)
Query Neighborhood Hits	331	Target Neighborhood Hits	285	Shared Neighborhood Hits	140
SwissProt Accessions	P78414, Q7Z2F8, Q8N312	Gene names	IRX1, IRXA1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

IRX2_MOUSE
θ value	0.00390308 (rank : 23)	NC score	0.266596 (rank : 24)
Query Neighborhood Hits	331	Target Neighborhood Hits	264	Shared Neighborhood Hits	137
SwissProt Accessions	P81066, O55121, Q9ERN1	Gene names	Irx2, Irxa2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

IRX5_HUMAN
θ value	0.00390308 (rank : 24)	NC score	0.260668 (rank : 37)
Query Neighborhood Hits	331	Target Neighborhood Hits	362	Shared Neighborhood Hits	137
SwissProt Accessions	P78411, P78416, Q7Z2E1	Gene names	IRX5, IRX2A, IRXB2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2) (IRX-2A).

IRX5_MOUSE
θ value	0.00390308 (rank : 25)	NC score	0.258226 (rank : 38)
Query Neighborhood Hits	331	Target Neighborhood Hits	324	Shared Neighborhood Hits	137
SwissProt Accessions	Q9JKQ4, Q80WV4, Q9JLL5	Gene names	Irx5, Irxb2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2).

IRX6_MOUSE
θ value	0.00390308 (rank : 26)	NC score	0.254379 (rank : 43)
Query Neighborhood Hits	331	Target Neighborhood Hits	256	Shared Neighborhood Hits	149
SwissProt Accessions	Q9ER75	Gene names	Irx6, Irxb3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

LHX4_HUMAN
θ value	0.00390308 (rank : 27)	NC score	0.246693 (rank : 61)
Query Neighborhood Hits	331	Target Neighborhood Hits	455	Shared Neighborhood Hits	218
SwissProt Accessions	Q969G2, Q8NHE0, Q8TCJ1, Q8WWX2, Q969W2	Gene names	LHX4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

IRX1_MOUSE
θ value	0.00509761 (rank : 28)	NC score	0.247150 (rank : 57)
Query Neighborhood Hits	331	Target Neighborhood Hits	269	Shared Neighborhood Hits	138
SwissProt Accessions	P81068, O55120, Q9JLL6	Gene names	Irx1, Irxa1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

IRX6_HUMAN
θ value	0.00509761 (rank : 29)	NC score	0.266143 (rank : 26)
Query Neighborhood Hits	331	Target Neighborhood Hits	262	Shared Neighborhood Hits	150
SwissProt Accessions	P78412, Q7Z2K0	Gene names	IRX6, IRX7, IRXB3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

LHX4_MOUSE
θ value	0.00509761 (rank : 30)	NC score	0.245797 (rank : 65)
Query Neighborhood Hits	331	Target Neighborhood Hits	457	Shared Neighborhood Hits	218
SwissProt Accessions	P53776, O08916, Q9R280	Gene names	Lhx4, Gsh-4, Gsh4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

RX_HUMAN
θ value	0.00665767 (rank : 31)	NC score	0.247098 (rank : 59)
Query Neighborhood Hits	331	Target Neighborhood Hits	423	Shared Neighborhood Hits	218
SwissProt Accessions	Q9Y2V3	Gene names	RAX, RX
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

TAOK3_HUMAN
θ value	0.00665767 (rank : 32)	NC score	0.006036 (rank : 469)
Query Neighborhood Hits	331	Target Neighborhood Hits	1494	Shared Neighborhood Hits	21
SwissProt Accessions	Q9H2K8, Q658N1, Q8IUM4, Q9HC79, Q9NZM9, Q9UHG7	Gene names	TAOK3, DPK, JIK, KDS, MAP3K18
Domain Architecture	No domain graphic available
Description	Serine/threonine-protein kinase TAO3 (EC 2.7.11.1) (Thousand and one amino acid protein 3) (Jun kinase-inhibitory kinase) (JNK/SAPK- inhibitory kinase) (Dendritic cell-derived protein kinase) (Cutaneous T-cell lymphoma tumor antigen HD-CL-09) (CTCL tumor antigen HD-CL-09) (Kinase from chicken homolog A) (hKFC-A).

GSCL_HUMAN
θ value	0.00869519 (rank : 33)	NC score	0.281736 (rank : 14)
Query Neighborhood Hits	331	Target Neighborhood Hits	343	Shared Neighborhood Hits	206
SwissProt Accessions	O15499	Gene names	GSCL
Domain Architecture
Description	Homeobox protein goosecoid-like (GSC-2).

NKX23_MOUSE
θ value	0.00869519 (rank : 34)	NC score	0.229301 (rank : 111)
Query Neighborhood Hits	331	Target Neighborhood Hits	340	Shared Neighborhood Hits	208
SwissProt Accessions	P97334, Q9QZ60, Q9WV67	Gene names	Nkx2-3, Nkx-2.3, Nkx2c
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NK-2 homolog C) (Nkx2-C) (Homeobox protein NK-2 homolog 3).

PAX3_HUMAN
θ value	0.00869519 (rank : 35)	NC score	0.243181 (rank : 73)
Query Neighborhood Hits	331	Target Neighborhood Hits	513	Shared Neighborhood Hits	215
SwissProt Accessions	P23760, Q16448	Gene names	PAX3, HUP2
Domain Architecture
Description	Paired box protein Pax-3 (HUP2).

PAX3_MOUSE
θ value	0.00869519 (rank : 36)	NC score	0.243561 (rank : 72)
Query Neighborhood Hits	331	Target Neighborhood Hits	478	Shared Neighborhood Hits	216
SwissProt Accessions	P24610, Q3UFQ9, Q8BRE7, Q9CXI6	Gene names	Pax3, Pax-3
Domain Architecture
Description	Paired box protein Pax-3.

PO3F3_HUMAN
θ value	0.00869519 (rank : 37)	NC score	0.160678 (rank : 271)
Query Neighborhood Hits	331	Target Neighborhood Hits	311	Shared Neighborhood Hits	190
SwissProt Accessions	P20264, P78379	Gene names	POU3F3, BRN1, OTF8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

PO3F3_MOUSE
θ value	0.00869519 (rank : 38)	NC score	0.160637 (rank : 272)
Query Neighborhood Hits	331	Target Neighborhood Hits	308	Shared Neighborhood Hits	190
SwissProt Accessions	P31361	Gene names	Pou3f3, Brn-1, Brn1, Otf8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

NKX23_HUMAN
θ value	0.0113563 (rank : 39)	NC score	0.233463 (rank : 95)
Query Neighborhood Hits	331	Target Neighborhood Hits	346	Shared Neighborhood Hits	212
SwissProt Accessions	Q8TAU0, Q9NYS6	Gene names	NKX2-3, NKX23, NKX2C
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NKX-2.3) (Homeobox protein NK-2 homolog C).

GSC_MOUSE
θ value	0.0148317 (rank : 40)	NC score	0.270722 (rank : 17)
Query Neighborhood Hits	331	Target Neighborhood Hits	368	Shared Neighborhood Hits	217
SwissProt Accessions	Q02591	Gene names	Gsc
Domain Architecture
Description	Homeobox protein goosecoid.

LHX2_HUMAN
θ value	0.0148317 (rank : 41)	NC score	0.239216 (rank : 81)
Query Neighborhood Hits	331	Target Neighborhood Hits	432	Shared Neighborhood Hits	202
SwissProt Accessions	P50458, O95860, Q8N1Z3	Gene names	LHX2, LH2
Domain Architecture
Description	LIM/homeobox protein Lhx2 (Homeobox protein LH-2).

PAX4_HUMAN
θ value	0.0148317 (rank : 42)	NC score	0.247819 (rank : 55)
Query Neighborhood Hits	331	Target Neighborhood Hits	367	Shared Neighborhood Hits	221
SwissProt Accessions	O43316, O95161, Q6B0H0	Gene names	PAX4
Domain Architecture
Description	Paired box protein Pax-4.

PO6F1_HUMAN
θ value	0.0148317 (rank : 43)	NC score	0.215894 (rank : 140)
Query Neighborhood Hits	331	Target Neighborhood Hits	370	Shared Neighborhood Hits	204
SwissProt Accessions	Q14863	Gene names	POU6F1, BRN5, MPOU, TCFB1
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (mPOU homeobox protein) (Brain-specific homeobox/POU domain protein 5) (Brain-5) (Brn-5 protein).

PO6F1_MOUSE
θ value	0.0148317 (rank : 44)	NC score	0.213535 (rank : 147)
Query Neighborhood Hits	331	Target Neighborhood Hits	581	Shared Neighborhood Hits	213
SwissProt Accessions	Q07916, Q91XK3	Gene names	Pou6f1, Emb
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (Octamer-binding transcription factor EMB) (Transcription regulatory protein MCP-1).

GSCL_MOUSE
θ value	0.0193708 (rank : 45)	NC score	0.282712 (rank : 13)
Query Neighborhood Hits	331	Target Neighborhood Hits	339	Shared Neighborhood Hits	206
SwissProt Accessions	P56916	Gene names	Gscl
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid-like (GSC-2).

LHX2_MOUSE
θ value	0.0193708 (rank : 46)	NC score	0.238957 (rank : 83)
Query Neighborhood Hits	331	Target Neighborhood Hits	431	Shared Neighborhood Hits	202
SwissProt Accessions	Q9Z0S2	Gene names	Lhx2
Domain Architecture
Description	LIM/homeobox protein Lhx2.

LHX3_MOUSE
θ value	0.0193708 (rank : 47)	NC score	0.232479 (rank : 98)
Query Neighborhood Hits	331	Target Neighborhood Hits	451	Shared Neighborhood Hits	214
SwissProt Accessions	P50481, Q61800, Q61801	Gene names	Lhx3, Lim-3, Lim3, Plim
Domain Architecture
Description	LIM/homeobox protein Lhx3 (Homeobox protein LIM-3) (Homeobox protein P-LIM) (LIM homeobox protein 3).

LHX8_MOUSE
θ value	0.0193708 (rank : 48)	NC score	0.246114 (rank : 64)
Query Neighborhood Hits	331	Target Neighborhood Hits	406	Shared Neighborhood Hits	202
SwissProt Accessions	O35652, O70163, O88707	Gene names	Lhx8, Lhx7
Domain Architecture
Description	LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3).

LPIN3_MOUSE
θ value	0.0193708 (rank : 49)	NC score	0.055024 (rank : 384)
Query Neighborhood Hits	331	Target Neighborhood Hits	52	Shared Neighborhood Hits	4
SwissProt Accessions	Q99PI4, Q3TQ75, Q8C7R9	Gene names	Lpin3
Domain Architecture
Description	Lipin-3.

PITX3_HUMAN
θ value	0.0193708 (rank : 50)	NC score	0.271700 (rank : 15)
Query Neighborhood Hits	331	Target Neighborhood Hits	366	Shared Neighborhood Hits	222
SwissProt Accessions	O75364	Gene names	PITX3, PTX3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

PITX3_MOUSE
θ value	0.0193708 (rank : 51)	NC score	0.270497 (rank : 18)
Query Neighborhood Hits	331	Target Neighborhood Hits	380	Shared Neighborhood Hits	224
SwissProt Accessions	O35160	Gene names	Pitx3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

ZN142_HUMAN
θ value	0.0193708 (rank : 52)	NC score	0.043613 (rank : 389)
Query Neighborhood Hits	331	Target Neighborhood Hits	1007	Shared Neighborhood Hits	72
SwissProt Accessions	P52746, Q92510	Gene names	ZNF142, KIAA0236
Domain Architecture	No domain graphic available
Description	Zinc finger protein 142 (HA4654).

RX_MOUSE
θ value	0.0252991 (rank : 53)	NC score	0.249625 (rank : 52)
Query Neighborhood Hits	331	Target Neighborhood Hits	429	Shared Neighborhood Hits	217
SwissProt Accessions	O35602, O08748	Gene names	Rax, Rx
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

ISL1_HUMAN
θ value	0.0330416 (rank : 54)	NC score	0.240645 (rank : 77)
Query Neighborhood Hits	331	Target Neighborhood Hits	421	Shared Neighborhood Hits	206
SwissProt Accessions	P61371, P20663, P47894	Gene names	ISL1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

ISL1_MOUSE
θ value	0.0330416 (rank : 55)	NC score	0.240645 (rank : 78)
Query Neighborhood Hits	331	Target Neighborhood Hits	421	Shared Neighborhood Hits	206
SwissProt Accessions	P61372, P20663, P47894, Q812D8	Gene names	Isl1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

LHX3_HUMAN
θ value	0.0330416 (rank : 56)	NC score	0.238061 (rank : 84)
Query Neighborhood Hits	331	Target Neighborhood Hits	474	Shared Neighborhood Hits	225
SwissProt Accessions	Q9UBR4, Q9NZB5, Q9P0I8, Q9P0I9	Gene names	LHX3
Domain Architecture
Description	LIM/homeobox protein Lhx3.

SIX5_HUMAN
θ value	0.0330416 (rank : 57)	NC score	0.262270 (rank : 35)
Query Neighborhood Hits	331	Target Neighborhood Hits	386	Shared Neighborhood Hits	186
SwissProt Accessions	Q8N196	Gene names	SIX5, DMAHP
Domain Architecture	No domain graphic available
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein).

SIX5_MOUSE
θ value	0.0330416 (rank : 58)	NC score	0.255492 (rank : 41)
Query Neighborhood Hits	331	Target Neighborhood Hits	354	Shared Neighborhood Hits	175
SwissProt Accessions	P70178	Gene names	Six5, Dmahp
Domain Architecture
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein homolog).

NKX31_HUMAN
θ value	0.0431538 (rank : 59)	NC score	0.210837 (rank : 161)
Query Neighborhood Hits	331	Target Neighborhood Hits	331	Shared Neighborhood Hits	200
SwissProt Accessions	Q99801, O15465, Q9H2P4, Q9H2P5, Q9H2P6, Q9H2P7, Q9HBG0	Gene names	NKX3-1, NKX3.1, NKX3A
Domain Architecture
Description	Homeobox protein Nkx-3.1.

PITX2_HUMAN
θ value	0.0431538 (rank : 60)	NC score	0.270889 (rank : 16)
Query Neighborhood Hits	331	Target Neighborhood Hits	381	Shared Neighborhood Hits	221
SwissProt Accessions	Q99697, O60578, O60579, O60580, Q9BY17	Gene names	PITX2, ARP1, RGS, RIEG, RIEG1
Domain Architecture
Description	Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription factor) (Solurshin) (ALL1-responsive protein ARP1).

PITX2_MOUSE
θ value	0.0431538 (rank : 61)	NC score	0.269984 (rank : 19)
Query Neighborhood Hits	331	Target Neighborhood Hits	383	Shared Neighborhood Hits	220
SwissProt Accessions	P97474, O08646, O70336, P97933, Q9JLA0, Q9QXB8, Q9R1V9, Q9Z141	Gene names	Pitx2, Arp1, Brx1, Otlx2, Ptx2, Rgs
Domain Architecture
Description	Pituitary homeobox 2 (Orthodenticle-like homeobox 2) (Solurshin) (ALL1-responsive protein ARP1) (BRX1 homeoprotein) (Paired-like homeodomain transcription factor Munc 30).

PRRXL_MOUSE
θ value	0.0431538 (rank : 62)	NC score	0.252430 (rank : 44)
Query Neighborhood Hits	331	Target Neighborhood Hits	350	Shared Neighborhood Hits	218
SwissProt Accessions	Q8BYH0, Q8K3F8	Gene names	Prrxl1, Drg11
Domain Architecture	No domain graphic available
Description	Paired-related homeobox protein-like 1 (Dorsal root ganglion 11) (Homeobox protein DRG11).

IRX4_HUMAN
θ value	0.0563607 (rank : 63)	NC score	0.236264 (rank : 87)
Query Neighborhood Hits	331	Target Neighborhood Hits	276	Shared Neighborhood Hits	162
SwissProt Accessions	P78413, Q9UHR2	Gene names	IRX4, IRXA3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

IRX4_MOUSE
θ value	0.0563607 (rank : 64)	NC score	0.236640 (rank : 85)
Query Neighborhood Hits	331	Target Neighborhood Hits	286	Shared Neighborhood Hits	160
SwissProt Accessions	Q9QY61	Gene names	Irx4, Irxa3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

ISL2_HUMAN
θ value	0.0563607 (rank : 65)	NC score	0.235132 (rank : 88)
Query Neighborhood Hits	331	Target Neighborhood Hits	435	Shared Neighborhood Hits	208
SwissProt Accessions	Q96A47	Gene names	ISL2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

ISL2_MOUSE
θ value	0.0563607 (rank : 66)	NC score	0.232372 (rank : 99)
Query Neighborhood Hits	331	Target Neighborhood Hits	426	Shared Neighborhood Hits	202
SwissProt Accessions	Q9CXV0	Gene names	Isl2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

SIX2_MOUSE
θ value	0.0563607 (rank : 67)	NC score	0.268172 (rank : 22)
Query Neighborhood Hits	331	Target Neighborhood Hits	376	Shared Neighborhood Hits	218
SwissProt Accessions	Q62232, P70179	Gene names	Six2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

TRPS1_HUMAN
θ value	0.0563607 (rank : 68)	NC score	0.116499 (rank : 337)
Query Neighborhood Hits	331	Target Neighborhood Hits	539	Shared Neighborhood Hits	54
SwissProt Accessions	Q9UHF7, Q9NWE1, Q9UHH6	Gene names	TRPS1
Domain Architecture
Description	Zinc finger transcription factor Trps1 (Zinc finger protein GC79) (Tricho-rhino-phalangeal syndrome type I protein).

CCD41_MOUSE
θ value	0.0736092 (rank : 69)	NC score	0.010910 (rank : 457)
Query Neighborhood Hits	331	Target Neighborhood Hits	1399	Shared Neighborhood Hits	25
SwissProt Accessions	Q9D5R3, Q3U7X7, Q3UX57, Q80VF0	Gene names	Ccdc41
Domain Architecture	No domain graphic available
Description	Coiled-coil domain-containing protein 41.

DLX3_MOUSE
θ value	0.0736092 (rank : 70)	NC score	0.232241 (rank : 100)
Query Neighborhood Hits	331	Target Neighborhood Hits	367	Shared Neighborhood Hits	220
SwissProt Accessions	Q64205	Gene names	Dlx3
Domain Architecture
Description	Homeobox protein DLX-3.

PITX1_HUMAN
θ value	0.0736092 (rank : 71)	NC score	0.267249 (rank : 23)
Query Neighborhood Hits	331	Target Neighborhood Hits	353	Shared Neighborhood Hits	217
SwissProt Accessions	P78337, O14677, O60425, Q9BTI5	Gene names	PITX1, BFT, PTX1
Domain Architecture
Description	Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot).

PITX1_MOUSE
θ value	0.0736092 (rank : 72)	NC score	0.265945 (rank : 27)
Query Neighborhood Hits	331	Target Neighborhood Hits	362	Shared Neighborhood Hits	221
SwissProt Accessions	P70314, O54742, P70427	Gene names	Pitx1, Bft, Potx, Ptx1
Domain Architecture
Description	Pituitary homeobox 1 (Homeobox protein P-OTX) (Pituitary OTX-related factor) (Hindlimb expressed homeobox protein backfoot) (Ptx1).

SIX2_HUMAN
θ value	0.0736092 (rank : 73)	NC score	0.265220 (rank : 29)
Query Neighborhood Hits	331	Target Neighborhood Hits	345	Shared Neighborhood Hits	206
SwissProt Accessions	Q9NPC8, Q9BXH7	Gene names	SIX2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

ZF64B_HUMAN
θ value	0.0736092 (rank : 74)	NC score	0.032436 (rank : 408)
Query Neighborhood Hits	331	Target Neighborhood Hits	740	Shared Neighborhood Hits	53
SwissProt Accessions	Q9NTW7, Q8WU98, Q9H9P1	Gene names	ZFP64, ZNF338
Domain Architecture	No domain graphic available
Description	Zinc finger protein 64, isoforms 3 and 4 (Zinc finger protein 338).

ZFP64_MOUSE
θ value	0.0736092 (rank : 75)	NC score	0.032790 (rank : 405)
Query Neighborhood Hits	331	Target Neighborhood Hits	733	Shared Neighborhood Hits	53
SwissProt Accessions	Q99KE8, P97365, Q9CWR3	Gene names	Zfp64
Domain Architecture	No domain graphic available
Description	Zinc finger protein 64 (Zfp-64).

ZN462_HUMAN
θ value	0.0736092 (rank : 76)	NC score	0.068703 (rank : 373)
Query Neighborhood Hits	331	Target Neighborhood Hits	740	Shared Neighborhood Hits	59
SwissProt Accessions	Q96JM2, Q8N408	Gene names	ZNF462, KIAA1803
Domain Architecture	No domain graphic available
Description	Zinc finger protein 462.

DLX3_HUMAN
θ value	0.0961366 (rank : 77)	NC score	0.239064 (rank : 82)
Query Neighborhood Hits	331	Target Neighborhood Hits	369	Shared Neighborhood Hits	222
SwissProt Accessions	O60479	Gene names	DLX3
Domain Architecture
Description	Homeobox protein DLX-3.

LHX1_HUMAN
θ value	0.0961366 (rank : 78)	NC score	0.247593 (rank : 56)
Query Neighborhood Hits	331	Target Neighborhood Hits	453	Shared Neighborhood Hits	210
SwissProt Accessions	P48742, Q3MIW0	Gene names	LHX1, LIM1
Domain Architecture
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

LHX1_MOUSE
θ value	0.0961366 (rank : 79)	NC score	0.247125 (rank : 58)
Query Neighborhood Hits	331	Target Neighborhood Hits	453	Shared Neighborhood Hits	210
SwissProt Accessions	P63006, P36199	Gene names	Lhx1, Lim-1, Lim1
Domain Architecture	No domain graphic available
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

LHX5_HUMAN
θ value	0.0961366 (rank : 80)	NC score	0.252059 (rank : 45)
Query Neighborhood Hits	331	Target Neighborhood Hits	453	Shared Neighborhood Hits	211
SwissProt Accessions	Q9H2C1	Gene names	LHX5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

LHX5_MOUSE
θ value	0.0961366 (rank : 81)	NC score	0.247083 (rank : 60)
Query Neighborhood Hits	331	Target Neighborhood Hits	456	Shared Neighborhood Hits	211
SwissProt Accessions	P61375, P50459	Gene names	Lhx5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

PAX7_HUMAN
θ value	0.0961366 (rank : 82)	NC score	0.242761 (rank : 74)
Query Neighborhood Hits	331	Target Neighborhood Hits	456	Shared Neighborhood Hits	222
SwissProt Accessions	P23759	Gene names	PAX7, HUP1
Domain Architecture
Description	Paired box protein Pax-7 (HUP1).

PAX7_MOUSE
θ value	0.0961366 (rank : 83)	NC score	0.244037 (rank : 70)
Query Neighborhood Hits	331	Target Neighborhood Hits	422	Shared Neighborhood Hits	222
SwissProt Accessions	P47239, Q9ES16	Gene names	Pax7, Pax-7
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-7.

SIX1_HUMAN
θ value	0.0961366 (rank : 84)	NC score	0.262220 (rank : 36)
Query Neighborhood Hits	331	Target Neighborhood Hits	343	Shared Neighborhood Hits	209
SwissProt Accessions	Q15475, Q96H64	Gene names	SIX1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

SIX1_MOUSE
θ value	0.0961366 (rank : 85)	NC score	0.262618 (rank : 31)
Query Neighborhood Hits	331	Target Neighborhood Hits	341	Shared Neighborhood Hits	209
SwissProt Accessions	Q62231, Q8CIL7	Gene names	Six1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

ZBT40_HUMAN
θ value	0.0961366 (rank : 86)	NC score	0.026785 (rank : 423)
Query Neighborhood Hits	331	Target Neighborhood Hits	949	Shared Neighborhood Hits	58
SwissProt Accessions	Q9NUA8, O75066, Q5TFU5, Q8N1R1	Gene names	ZBTB40, KIAA0478
Domain Architecture
Description	Zinc finger and BTB domain-containing protein 40.

EMX2_HUMAN
θ value	0.125558 (rank : 87)	NC score	0.234035 (rank : 91)
Query Neighborhood Hits	331	Target Neighborhood Hits	341	Shared Neighborhood Hits	217
SwissProt Accessions	Q04743, Q96NN8, Q9BQF4	Gene names	EMX2
Domain Architecture
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

EMX2_MOUSE
θ value	0.125558 (rank : 88)	NC score	0.234339 (rank : 90)
Query Neighborhood Hits	331	Target Neighborhood Hits	340	Shared Neighborhood Hits	218
SwissProt Accessions	Q04744, Q80UE7	Gene names	Emx2, Emx-2
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

HHEX_HUMAN
θ value	0.125558 (rank : 89)	NC score	0.211795 (rank : 158)
Query Neighborhood Hits	331	Target Neighborhood Hits	358	Shared Neighborhood Hits	205
SwissProt Accessions	Q03014	Gene names	HHEX, HEX, PRH, PRHX
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

HHEX_MOUSE
θ value	0.125558 (rank : 90)	NC score	0.214719 (rank : 142)
Query Neighborhood Hits	331	Target Neighborhood Hits	350	Shared Neighborhood Hits	208
SwissProt Accessions	P43120	Gene names	Hhex, Prhx
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

PO2F1_HUMAN
θ value	0.125558 (rank : 91)	NC score	0.199427 (rank : 190)
Query Neighborhood Hits	331	Target Neighborhood Hits	426	Shared Neighborhood Hits	202
SwissProt Accessions	P14859, Q5TBT7, Q6PK46, Q8NEU9, Q9BPV1	Gene names	POU2F1, OCT1, OTF1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

DLX5_HUMAN
θ value	0.163984 (rank : 92)	NC score	0.243961 (rank : 71)
Query Neighborhood Hits	331	Target Neighborhood Hits	405	Shared Neighborhood Hits	223
SwissProt Accessions	P56178, Q9UPL1	Gene names	DLX5
Domain Architecture
Description	Homeobox protein DLX-5.

DLX5_MOUSE
θ value	0.163984 (rank : 93)	NC score	0.246459 (rank : 62)
Query Neighborhood Hits	331	Target Neighborhood Hits	434	Shared Neighborhood Hits	223
SwissProt Accessions	P70396, O54876, O54877, O54878, Q9JJ45	Gene names	Dlx5
Domain Architecture
Description	Homeobox protein DLX-5.

GSC_HUMAN
θ value	0.163984 (rank : 94)	NC score	0.268251 (rank : 20)
Query Neighborhood Hits	331	Target Neighborhood Hits	369	Shared Neighborhood Hits	220
SwissProt Accessions	P56915, Q86YR1	Gene names	GSC
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid.

HXD3_MOUSE
θ value	0.163984 (rank : 95)	NC score	0.184509 (rank : 219)
Query Neighborhood Hits	331	Target Neighborhood Hits	435	Shared Neighborhood Hits	208
SwissProt Accessions	P09027, Q3UUD3	Gene names	Hoxd3, Hox-4.1, Hoxd-3
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4.1) (Homeobox protein MH-19).

NKX31_MOUSE
θ value	0.163984 (rank : 96)	NC score	0.211927 (rank : 157)
Query Neighborhood Hits	331	Target Neighborhood Hits	379	Shared Neighborhood Hits	202
SwissProt Accessions	P97436, O09087	Gene names	Nkx3-1, Nkx-3.1, Nkx3a
Domain Architecture
Description	Homeobox protein Nkx-3.1.

OTX1_HUMAN
θ value	0.163984 (rank : 97)	NC score	0.245584 (rank : 66)
Query Neighborhood Hits	331	Target Neighborhood Hits	379	Shared Neighborhood Hits	206
SwissProt Accessions	P32242, Q53TG6	Gene names	OTX1
Domain Architecture
Description	Homeobox protein OTX1.

PRRX1_HUMAN
θ value	0.163984 (rank : 98)	NC score	0.245506 (rank : 67)
Query Neighborhood Hits	331	Target Neighborhood Hits	347	Shared Neighborhood Hits	212
SwissProt Accessions	P54821, O60807	Gene names	PRRX1, PMX1
Domain Architecture
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein PHOX1).

PRRX1_MOUSE
θ value	0.163984 (rank : 99)	NC score	0.245397 (rank : 68)
Query Neighborhood Hits	331	Target Neighborhood Hits	346	Shared Neighborhood Hits	210
SwissProt Accessions	P63013, P43271, Q02810	Gene names	Prrx1, Pmx, Pmx1
Domain Architecture	No domain graphic available
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein mHox) (Homeobox protein K-2).

SHOX2_HUMAN
θ value	0.163984 (rank : 100)	NC score	0.250874 (rank : 48)
Query Neighborhood Hits	331	Target Neighborhood Hits	353	Shared Neighborhood Hits	203
SwissProt Accessions	O60902, O60465, O60467, O60903	Gene names	SHOX2, OG12X, SHOT
Domain Architecture
Description	Short stature homeobox protein 2 (Paired-related homeobox protein SHOT) (Homeobox protein Og12X).

SHOX2_MOUSE
θ value	0.163984 (rank : 101)	NC score	0.250638 (rank : 49)
Query Neighborhood Hits	331	Target Neighborhood Hits	348	Shared Neighborhood Hits	203
SwissProt Accessions	P70390, P70369	Gene names	Shox2, Og12x, Prx3
Domain Architecture
Description	Short stature homeobox protein 2 (Homeobox protein Og12X) (OG-12) (Paired family homeodomain protein Prx3).

SHOX_HUMAN
θ value	0.163984 (rank : 102)	NC score	0.254422 (rank : 42)
Query Neighborhood Hits	331	Target Neighborhood Hits	363	Shared Neighborhood Hits	205
SwissProt Accessions	O15266, O00412, O00413, O15267	Gene names	SHOX, PHOG
Domain Architecture
Description	Short stature homeobox protein (Short stature homeobox-containing protein) (Pseudoautosomal homeobox-containing osteogenic protein).

TEP1_HUMAN
θ value	0.163984 (rank : 103)	NC score	0.013429 (rank : 452)
Query Neighborhood Hits	331	Target Neighborhood Hits	371	Shared Neighborhood Hits	2
SwissProt Accessions	Q99973	Gene names	TEP1, TLP1, TP1
Domain Architecture
Description	Telomerase protein component 1 (Telomerase-associated protein 1) (Telomerase protein 1) (p240) (p80 telomerase homolog).

LHX9_HUMAN
θ value	0.21417 (rank : 104)	NC score	0.233931 (rank : 93)
Query Neighborhood Hits	331	Target Neighborhood Hits	444	Shared Neighborhood Hits	202
SwissProt Accessions	Q9NQ69, Q5VUE3, Q9BYU6, Q9NQ70	Gene names	LHX9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

LHX9_MOUSE
θ value	0.21417 (rank : 105)	NC score	0.233974 (rank : 92)
Query Neighborhood Hits	331	Target Neighborhood Hits	445	Shared Neighborhood Hits	202
SwissProt Accessions	Q9WUH2, Q9QYQ5, Q9QYQ6, Q9QZ00, Q9WU44	Gene names	Lhx9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

PAX6_HUMAN
θ value	0.21417 (rank : 106)	NC score	0.231946 (rank : 102)
Query Neighborhood Hits	331	Target Neighborhood Hits	383	Shared Neighborhood Hits	211
SwissProt Accessions	P26367, Q6N006, Q99413	Gene names	PAX6, AN2
Domain Architecture
Description	Paired box protein Pax-6 (Oculorhombin) (Aniridia type II protein).

PAX6_MOUSE
θ value	0.21417 (rank : 107)	NC score	0.231946 (rank : 103)
Query Neighborhood Hits	331	Target Neighborhood Hits	383	Shared Neighborhood Hits	211
SwissProt Accessions	P63015, P32117, P70601, Q62222, Q64037, Q8CEI5, Q8VDB5, Q921Q8	Gene names	Pax6, Pax-6, Sey
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-6 (Oculorhombin).

ZFHX2_HUMAN
θ value	0.21417 (rank : 108)	NC score	0.256636 (rank : 39)
Query Neighborhood Hits	331	Target Neighborhood Hits	1178	Shared Neighborhood Hits	261
SwissProt Accessions	Q9C0A1	Gene names	ZFHX2, KIAA1762
Domain Architecture
Description	Zinc finger homeobox protein 2.

CUTL1_MOUSE
θ value	0.279714 (rank : 109)	NC score	0.101629 (rank : 342)
Query Neighborhood Hits	331	Target Neighborhood Hits	1620	Shared Neighborhood Hits	194
SwissProt Accessions	P53564, O08994, P70301, Q571L6, Q91ZD2	Gene names	Cutl1, Cux, Cux1, Kiaa4047
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP) (Homeobox protein Cux).

DUX1_HUMAN
θ value	0.279714 (rank : 110)	NC score	0.266175 (rank : 25)
Query Neighborhood Hits	331	Target Neighborhood Hits	330	Shared Neighborhood Hits	206
SwissProt Accessions	O43812	Gene names	DUX1
Domain Architecture	No domain graphic available
Description	Double homeobox protein 1.

DUX5_HUMAN
θ value	0.279714 (rank : 111)	NC score	0.265061 (rank : 30)
Query Neighborhood Hits	331	Target Neighborhood Hits	330	Shared Neighborhood Hits	206
SwissProt Accessions	Q96PT3	Gene names	DUX5
Domain Architecture	No domain graphic available
Description	Double homeobox protein 5.

EMX1_HUMAN
θ value	0.279714 (rank : 112)	NC score	0.226584 (rank : 121)
Query Neighborhood Hits	331	Target Neighborhood Hits	336	Shared Neighborhood Hits	216
SwissProt Accessions	Q04741, Q86XB0	Gene names	EMX1
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty spiracles- like protein 1).

NKX26_MOUSE
θ value	0.279714 (rank : 113)	NC score	0.212602 (rank : 154)
Query Neighborhood Hits	331	Target Neighborhood Hits	343	Shared Neighborhood Hits	202
SwissProt Accessions	P43688	Gene names	Nkx2-6, Nkx-2.6, Nkx2f
Domain Architecture
Description	Homeobox protein Nkx-2.6 (Homeobox protein NK-2 homolog F).

PRRX2_HUMAN
θ value	0.279714 (rank : 114)	NC score	0.246457 (rank : 63)
Query Neighborhood Hits	331	Target Neighborhood Hits	348	Shared Neighborhood Hits	210
SwissProt Accessions	Q99811, Q9UIB3	Gene names	PRRX2, PMX2, PRX2
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Paired-related homeobox protein 2).

TLX3_MOUSE
θ value	0.279714 (rank : 115)	NC score	0.198426 (rank : 193)
Query Neighborhood Hits	331	Target Neighborhood Hits	346	Shared Neighborhood Hits	211
SwissProt Accessions	O55144	Gene names	Tlx3, Hox11l2, Rnx, Tlx1l2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox TLX-3) (Homeobox protein Hox-11L2) (Respiratory neuron homeobox protein).

ZBT47_HUMAN
θ value	0.279714 (rank : 116)	NC score	0.025445 (rank : 426)
Query Neighborhood Hits	331	Target Neighborhood Hits	737	Shared Neighborhood Hits	55
SwissProt Accessions	Q9UFB7, Q8WTY8, Q9ULN0	Gene names	ZBTB47, KIAA1190, ZNF651
Domain Architecture	No domain graphic available
Description	Zinc finger and BTB domain-containing protein 47 (Zinc finger protein 651).

ZF64A_HUMAN
θ value	0.279714 (rank : 117)	NC score	0.031827 (rank : 409)
Query Neighborhood Hits	331	Target Neighborhood Hits	737	Shared Neighborhood Hits	53
SwissProt Accessions	Q9NPA5, Q9NTS7, Q9NVH4	Gene names	ZFP64, ZNF338
Domain Architecture	No domain graphic available
Description	Zinc finger protein 64, isoforms 1 and 2 (Zinc finger protein 338).

ZFA_MOUSE
θ value	0.279714 (rank : 118)	NC score	0.040079 (rank : 396)
Query Neighborhood Hits	331	Target Neighborhood Hits	746	Shared Neighborhood Hits	56
SwissProt Accessions	P23607	Gene names	Zfa
Domain Architecture
Description	Zinc finger autosomal protein.

ZN236_HUMAN
θ value	0.279714 (rank : 119)	NC score	0.038051 (rank : 398)
Query Neighborhood Hits	331	Target Neighborhood Hits	844	Shared Neighborhood Hits	60
SwissProt Accessions	Q9UL36, Q9UL37	Gene names	ZNF236
Domain Architecture	No domain graphic available
Description	Zinc finger protein 236.

CTCF_HUMAN
θ value	0.365318 (rank : 120)	NC score	0.028198 (rank : 418)
Query Neighborhood Hits	331	Target Neighborhood Hits	764	Shared Neighborhood Hits	52
SwissProt Accessions	P49711	Gene names	CTCF
Domain Architecture
Description	Transcriptional repressor CTCF (CCCTC-binding factor) (CTCFL paralog) (11-zinc finger protein).

CTCF_MOUSE
θ value	0.365318 (rank : 121)	NC score	0.028172 (rank : 419)
Query Neighborhood Hits	331	Target Neighborhood Hits	796	Shared Neighborhood Hits	54
SwissProt Accessions	Q61164	Gene names	Ctcf
Domain Architecture
Description	Transcriptional repressor CTCF (CCCTC-binding factor) (CTCFL paralog) (11-zinc finger protein).

PO2F1_MOUSE
θ value	0.365318 (rank : 122)	NC score	0.174293 (rank : 243)
Query Neighborhood Hits	331	Target Neighborhood Hits	408	Shared Neighborhood Hits	190
SwissProt Accessions	P25425, Q61994, Q63891, Q6Y681, Q7TSD0, Q8BT04, Q8K570, Q99JH0, Q9WTZ4, Q9WTZ5, Q9WTZ6	Gene names	Pou2f1, Oct-1, Otf-1, Otf1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

PO2F3_HUMAN
θ value	0.365318 (rank : 123)	NC score	0.173203 (rank : 246)
Query Neighborhood Hits	331	Target Neighborhood Hits	319	Shared Neighborhood Hits	183
SwissProt Accessions	Q9UKI9, Q9UKR7, Q9Y504	Gene names	POU2F3, OTF11, PLA1
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Transcription factor Skn-1) (PLA-1 protein).

PO2F3_MOUSE
θ value	0.365318 (rank : 124)	NC score	0.175262 (rank : 240)
Query Neighborhood Hits	331	Target Neighborhood Hits	328	Shared Neighborhood Hits	185
SwissProt Accessions	P31362	Gene names	Pou2f3, Epoc1, Oct11, Otf-11, Otf11
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Epoc-1).

PRRX2_MOUSE
θ value	0.365318 (rank : 125)	NC score	0.249050 (rank : 53)
Query Neighborhood Hits	331	Target Neighborhood Hits	351	Shared Neighborhood Hits	211
SwissProt Accessions	Q06348, Q61651	Gene names	Prrx2, Prx2, S8
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Homeobox protein S8).

ZN513_HUMAN
θ value	0.365318 (rank : 126)	NC score	0.030722 (rank : 413)
Query Neighborhood Hits	331	Target Neighborhood Hits	709	Shared Neighborhood Hits	53
SwissProt Accessions	Q8N8E2	Gene names	ZNF513
Domain Architecture	No domain graphic available
Description	Zinc finger protein 513.

ZN711_HUMAN
θ value	0.365318 (rank : 127)	NC score	0.043121 (rank : 390)
Query Neighborhood Hits	331	Target Neighborhood Hits	751	Shared Neighborhood Hits	58
SwissProt Accessions	Q9Y462, Q6NX42, Q9Y4J6	Gene names	ZNF711, CMPX1, ZNF6
Domain Architecture
Description	Zinc finger protein 711 (Zinc finger protein 6).

CUTL1_HUMAN
θ value	0.47712 (rank : 128)	NC score	0.097494 (rank : 346)
Query Neighborhood Hits	331	Target Neighborhood Hits	1574	Shared Neighborhood Hits	186
SwissProt Accessions	P39880, Q6NYH4, Q9UEV5	Gene names	CUTL1
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP).

FETUB_MOUSE
θ value	0.47712 (rank : 129)	NC score	0.033116 (rank : 403)
Query Neighborhood Hits	331	Target Neighborhood Hits	47	Shared Neighborhood Hits	4
SwissProt Accessions	Q9QXC1	Gene names	Fetub
Domain Architecture
Description	Fetuin-B precursor (IRL685).

HXA13_HUMAN
θ value	0.47712 (rank : 130)	NC score	0.213241 (rank : 149)
Query Neighborhood Hits	331	Target Neighborhood Hits	353	Shared Neighborhood Hits	213
SwissProt Accessions	P31271, O43371	Gene names	HOXA13, HOX1J
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1J).

HXA13_MOUSE
θ value	0.47712 (rank : 131)	NC score	0.212962 (rank : 151)
Query Neighborhood Hits	331	Target Neighborhood Hits	351	Shared Neighborhood Hits	213
SwissProt Accessions	Q62424	Gene names	Hoxa13, Hox-1.10
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1.10).

HXB13_HUMAN
θ value	0.47712 (rank : 132)	NC score	0.212865 (rank : 152)
Query Neighborhood Hits	331	Target Neighborhood Hits	377	Shared Neighborhood Hits	219
SwissProt Accessions	Q92826, Q96QM4, Q99810	Gene names	HOXB13
Domain Architecture
Description	Homeobox protein Hox-B13.

HXB13_MOUSE
θ value	0.47712 (rank : 133)	NC score	0.212290 (rank : 155)
Query Neighborhood Hits	331	Target Neighborhood Hits	384	Shared Neighborhood Hits	216
SwissProt Accessions	P70321, Q80Y12	Gene names	Hoxb13
Domain Architecture
Description	Homeobox protein Hox-B13.

LHX61_HUMAN
θ value	0.47712 (rank : 134)	NC score	0.239601 (rank : 80)
Query Neighborhood Hits	331	Target Neighborhood Hits	412	Shared Neighborhood Hits	198
SwissProt Accessions	Q9UPM6, Q5T7S8, Q9NTK3, Q9UPM5	Gene names	LHX6, LHX6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1 (Lhx6).

LHX6_MOUSE
θ value	0.47712 (rank : 135)	NC score	0.242512 (rank : 75)
Query Neighborhood Hits	331	Target Neighborhood Hits	399	Shared Neighborhood Hits	196
SwissProt Accessions	O88706	Gene names	Lhx6
Domain Architecture
Description	LIM/homeobox protein Lhx6.

MEOX1_MOUSE
θ value	0.47712 (rank : 136)	NC score	0.208051 (rank : 168)
Query Neighborhood Hits	331	Target Neighborhood Hits	345	Shared Neighborhood Hits	209
SwissProt Accessions	P32442	Gene names	Meox1, Mox-1, Mox1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

NKX25_HUMAN
θ value	0.47712 (rank : 137)	NC score	0.229529 (rank : 108)
Query Neighborhood Hits	331	Target Neighborhood Hits	338	Shared Neighborhood Hits	211
SwissProt Accessions	P52952	Gene names	NKX2-5, CSX, NKX2.5, NKX2E
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

NKX25_MOUSE
θ value	0.47712 (rank : 138)	NC score	0.227747 (rank : 116)
Query Neighborhood Hits	331	Target Neighborhood Hits	347	Shared Neighborhood Hits	212
SwissProt Accessions	P42582, P97335	Gene names	Nkx2-5, Csx, Nkx-2.5, Nkx2e
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

SON_HUMAN
θ value	0.47712 (rank : 139)	NC score	0.025565 (rank : 425)
Query Neighborhood Hits	331	Target Neighborhood Hits	1568	Shared Neighborhood Hits	53
SwissProt Accessions	P18583, O14487, O95981, Q14120, Q9H7B1, Q9P070, Q9P072, Q9UKP9, Q9UPY0	Gene names	SON, C21orf50, DBP5, KIAA1019, NREBP
Domain Architecture
Description	SON protein (SON3) (Negative regulatory element-binding protein) (NRE- binding protein) (DBP-5) (Bax antagonist selected in saccharomyces 1) (BASS1).

HXA3_HUMAN
θ value	0.62314 (rank : 140)	NC score	0.174830 (rank : 241)
Query Neighborhood Hits	331	Target Neighborhood Hits	535	Shared Neighborhood Hits	220
SwissProt Accessions	O43365	Gene names	HOXA3, HOX1E
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1E).

HXD3_HUMAN
θ value	0.62314 (rank : 141)	NC score	0.181354 (rank : 228)
Query Neighborhood Hits	331	Target Neighborhood Hits	433	Shared Neighborhood Hits	210
SwissProt Accessions	P31249, Q99955, Q9BSC5	Gene names	HOXD3, HOX4A
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4A).

MEOX1_HUMAN
θ value	0.62314 (rank : 142)	NC score	0.207027 (rank : 173)
Query Neighborhood Hits	331	Target Neighborhood Hits	342	Shared Neighborhood Hits	204
SwissProt Accessions	P50221	Gene names	MEOX1, MOX1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

PAX4_MOUSE
θ value	0.62314 (rank : 143)	NC score	0.240685 (rank : 76)
Query Neighborhood Hits	331	Target Neighborhood Hits	370	Shared Neighborhood Hits	219
SwissProt Accessions	P32115, P97341, Q9QUR1, Q9R091	Gene names	Pax4, Pax-4
Domain Architecture
Description	Paired box protein Pax-4.

SATB1_MOUSE
θ value	0.62314 (rank : 144)	NC score	0.077253 (rank : 368)
Query Neighborhood Hits	331	Target Neighborhood Hits	130	Shared Neighborhood Hits	42
SwissProt Accessions	Q60611	Gene names	Satb1
Domain Architecture
Description	DNA-binding protein SATB1 (Special AT-rich sequence-binding protein 1).

SIX3_HUMAN
θ value	0.62314 (rank : 145)	NC score	0.227232 (rank : 118)
Query Neighborhood Hits	331	Target Neighborhood Hits	285	Shared Neighborhood Hits	188
SwissProt Accessions	O95343	Gene names	SIX3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX3_MOUSE
θ value	0.62314 (rank : 146)	NC score	0.227197 (rank : 119)
Query Neighborhood Hits	331	Target Neighborhood Hits	289	Shared Neighborhood Hits	188
SwissProt Accessions	Q62233, P70176, P70177	Gene names	Six3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

ZFX_HUMAN
θ value	0.62314 (rank : 147)	NC score	0.040700 (rank : 394)
Query Neighborhood Hits	331	Target Neighborhood Hits	751	Shared Neighborhood Hits	57
SwissProt Accessions	P17010, O43668, Q8WYJ8	Gene names	ZFX
Domain Architecture
Description	Zinc finger X-chromosomal protein.

ZFX_MOUSE
θ value	0.62314 (rank : 148)	NC score	0.040641 (rank : 395)
Query Neighborhood Hits	331	Target Neighborhood Hits	748	Shared Neighborhood Hits	57
SwissProt Accessions	P17012, P17011	Gene names	Zfx
Domain Architecture
Description	Zinc finger X-chromosomal protein.

ZFY_HUMAN
θ value	0.62314 (rank : 149)	NC score	0.040749 (rank : 393)
Query Neighborhood Hits	331	Target Neighborhood Hits	752	Shared Neighborhood Hits	59
SwissProt Accessions	P08048, Q14021, Q15558, Q96TF3	Gene names	ZFY
Domain Architecture
Description	Zinc finger Y-chromosomal protein.

DUX4_HUMAN
θ value	0.813845 (rank : 150)	NC score	0.262546 (rank : 32)
Query Neighborhood Hits	331	Target Neighborhood Hits	403	Shared Neighborhood Hits	215
SwissProt Accessions	Q9UBX2	Gene names	DUX4, DUX10
Domain Architecture	No domain graphic available
Description	Double homeobox protein 4 (Double homeobox protein 10) (Double homeobox protein 4/10).

HXD13_HUMAN
θ value	0.813845 (rank : 151)	NC score	0.202561 (rank : 179)
Query Neighborhood Hits	331	Target Neighborhood Hits	332	Shared Neighborhood Hits	207
SwissProt Accessions	P35453	Gene names	HOXD13, HOX4I
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4I).

HXD13_MOUSE
θ value	0.813845 (rank : 152)	NC score	0.202629 (rank : 178)
Query Neighborhood Hits	331	Target Neighborhood Hits	324	Shared Neighborhood Hits	207
SwissProt Accessions	P70217, Q2VPB0, Q2VPB1, Q64177	Gene names	Hoxd13, Hox-4.8
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4.8).

LASS2_HUMAN
θ value	0.813845 (rank : 153)	NC score	0.057304 (rank : 380)
Query Neighborhood Hits	331	Target Neighborhood Hits	47	Shared Neighborhood Hits	31
SwissProt Accessions	Q96G23, Q9HD96, Q9NW79	Gene names	LASS2, TMSG1
Domain Architecture	No domain graphic available
Description	LAG1 longevity assurance homolog 2 (Tumor metastasis-suppressor gene 1 protein) (SP260).

LHX61_MOUSE
θ value	0.813845 (rank : 154)	NC score	0.228189 (rank : 115)
Query Neighborhood Hits	331	Target Neighborhood Hits	396	Shared Neighborhood Hits	191
SwissProt Accessions	Q9R1R0, Q9R1R1	Gene names	Lhx6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1.

MSX2_HUMAN
θ value	0.813845 (rank : 155)	NC score	0.207292 (rank : 171)
Query Neighborhood Hits	331	Target Neighborhood Hits	337	Shared Neighborhood Hits	206
SwissProt Accessions	P35548	Gene names	MSX2, HOX8
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8).

MSX2_MOUSE
θ value	0.813845 (rank : 156)	NC score	0.207340 (rank : 170)
Query Neighborhood Hits	331	Target Neighborhood Hits	345	Shared Neighborhood Hits	205
SwissProt Accessions	Q03358, Q63856	Gene names	Msx2, Hox-8.1, Msx-2
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8.1).

PBX4_MOUSE
θ value	0.813845 (rank : 157)	NC score	0.186935 (rank : 215)
Query Neighborhood Hits	331	Target Neighborhood Hits	324	Shared Neighborhood Hits	182
SwissProt Accessions	Q99NE9, Q8CFL2, Q99NE8	Gene names	Pbx4
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 4 (Homeobox protein PBX4).

SATB1_HUMAN
θ value	0.813845 (rank : 158)	NC score	0.075277 (rank : 369)
Query Neighborhood Hits	331	Target Neighborhood Hits	130	Shared Neighborhood Hits	43
SwissProt Accessions	Q01826	Gene names	SATB1
Domain Architecture
Description	DNA-binding protein SATB1 (Special AT-rich sequence-binding protein 1).

TRPS1_MOUSE
θ value	0.813845 (rank : 159)	NC score	0.091558 (rank : 355)
Query Neighborhood Hits	331	Target Neighborhood Hits	609	Shared Neighborhood Hits	53
SwissProt Accessions	Q925H1	Gene names	Trps1
Domain Architecture
Description	Zinc finger transcription factor Trps1.

ZN335_HUMAN
θ value	0.813845 (rank : 160)	NC score	0.033672 (rank : 402)
Query Neighborhood Hits	331	Target Neighborhood Hits	973	Shared Neighborhood Hits	64
SwissProt Accessions	Q9H4Z2, Q9H684	Gene names	ZNF335
Domain Architecture	No domain graphic available
Description	Zinc finger protein 335.

ZN471_HUMAN
θ value	0.813845 (rank : 161)	NC score	0.022405 (rank : 433)
Query Neighborhood Hits	331	Target Neighborhood Hits	771	Shared Neighborhood Hits	55
SwissProt Accessions	Q9BX82, O75260, Q8N3V1, Q9P2F1	Gene names	ZNF471, ERP1, KIAA1396
Domain Architecture
Description	Zinc finger protein 471 (EZFIT-related protein 1).

DLX4_HUMAN
θ value	1.06291 (rank : 162)	NC score	0.233648 (rank : 94)
Query Neighborhood Hits	331	Target Neighborhood Hits	350	Shared Neighborhood Hits	210
SwissProt Accessions	Q92988, O60480, Q13265, Q6PJK0, Q9HBE0	Gene names	DLX4, BP1, DLX7, DLX8
Domain Architecture	No domain graphic available
Description	Homeobox protein DLX-4 (DLX-7) (DLX-8) (Beta protein 1).

DUX3_HUMAN
θ value	1.06291 (rank : 163)	NC score	0.249728 (rank : 51)
Query Neighborhood Hits	331	Target Neighborhood Hits	312	Shared Neighborhood Hits	194
SwissProt Accessions	Q96PT4, Q9UND2	Gene names	DUX3
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 3.

MYNN_HUMAN
θ value	1.06291 (rank : 164)	NC score	0.022617 (rank : 431)
Query Neighborhood Hits	331	Target Neighborhood Hits	826	Shared Neighborhood Hits	54
SwissProt Accessions	Q9NPC7, Q6QHA6, Q6QHA7, Q6R3G1, Q6R3G2, Q6R4A0, Q7Z716, Q7Z717, Q86Z11, Q86Z12, Q9NS01, Q9UIW8	Gene names	MYNN, OSZF, ZBTB31
Domain Architecture	No domain graphic available
Description	Myoneurin (Zinc finger and BTB domain-containing protein 31).

MYNN_MOUSE
θ value	1.06291 (rank : 165)	NC score	0.022515 (rank : 432)
Query Neighborhood Hits	331	Target Neighborhood Hits	820	Shared Neighborhood Hits	53
SwissProt Accessions	Q99MD8, Q6P1G7, Q8BT55, Q922I4, Q9CSA0, Q9CXJ8	Gene names	Mynn
Domain Architecture	No domain graphic available
Description	Myoneurin.

PO2F2_HUMAN
θ value	1.06291 (rank : 166)	NC score	0.158680 (rank : 277)
Query Neighborhood Hits	331	Target Neighborhood Hits	379	Shared Neighborhood Hits	189
SwissProt Accessions	P09086, Q16648, Q9BRS4	Gene names	POU2F2, OCT2, OTF2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

PO2F2_MOUSE
θ value	1.06291 (rank : 167)	NC score	0.160303 (rank : 274)
Query Neighborhood Hits	331	Target Neighborhood Hits	353	Shared Neighborhood Hits	186
SwissProt Accessions	Q00196, Q00197, Q00198, Q00199, Q00200, Q00201, Q05882, Q61995, Q61996, Q64245	Gene names	Pou2f2, Oct2, Otf2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

HXC13_HUMAN
θ value	1.38821 (rank : 168)	NC score	0.217290 (rank : 135)
Query Neighborhood Hits	331	Target Neighborhood Hits	336	Shared Neighborhood Hits	212
SwissProt Accessions	P31276, Q96J32, Q9NR24, Q9NYD5	Gene names	HOXC13, HOX3G
Domain Architecture
Description	Homeobox protein Hox-C13 (Hox-3G).

HXC13_MOUSE
θ value	1.38821 (rank : 169)	NC score	0.217264 (rank : 136)
Query Neighborhood Hits	331	Target Neighborhood Hits	337	Shared Neighborhood Hits	212
SwissProt Accessions	P50207, Q53Z78, Q920I7	Gene names	Hoxc13, Hoxc-13
Domain Architecture
Description	Homeobox protein Hox-C13.

HXD8_MOUSE
θ value	1.38821 (rank : 170)	NC score	0.162744 (rank : 268)
Query Neighborhood Hits	331	Target Neighborhood Hits	333	Shared Neighborhood Hits	203
SwissProt Accessions	P23463	Gene names	Hoxd8, Hox-4.3, Hoxd-8
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4).

REST_HUMAN
θ value	1.38821 (rank : 171)	NC score	0.005901 (rank : 471)
Query Neighborhood Hits	331	Target Neighborhood Hits	1605	Shared Neighborhood Hits	22
SwissProt Accessions	P30622	Gene names	RSN, CYLN1
Domain Architecture
Description	Restin (Cytoplasmic linker protein 170 alpha-2) (CLIP-170) (Reed- Sternberg intermediate filament-associated protein) (Cytoplasmic linker protein 1).

RGS3_MOUSE
θ value	1.38821 (rank : 172)	NC score	0.017861 (rank : 447)
Query Neighborhood Hits	331	Target Neighborhood Hits	1621	Shared Neighborhood Hits	49
SwissProt Accessions	Q9DC04, Q5SRB1, Q5SRB4, Q5SRB8, Q8CEE3, Q8VI25, Q925G9, Q9JL22, Q9JL23, Q9QXA2	Gene names	Rgs3
Domain Architecture
Description	Regulator of G-protein signaling 3 (RGS3) (C2PA).

ZN406_HUMAN
θ value	1.38821 (rank : 173)	NC score	0.038738 (rank : 397)
Query Neighborhood Hits	331	Target Neighborhood Hits	794	Shared Neighborhood Hits	55
SwissProt Accessions	Q9P243, Q3MIM5, Q6PJ01, Q75PJ7, Q75PJ9, Q86X64	Gene names	ZNF406, KIAA1485
Domain Architecture	No domain graphic available
Description	Zinc finger protein 406 (Protein ZFAT).

EVX1_HUMAN
θ value	1.81305 (rank : 174)	NC score	0.195378 (rank : 201)
Query Neighborhood Hits	331	Target Neighborhood Hits	349	Shared Neighborhood Hits	202
SwissProt Accessions	P49640	Gene names	EVX1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

EVX1_MOUSE
θ value	1.81305 (rank : 175)	NC score	0.199365 (rank : 191)
Query Neighborhood Hits	331	Target Neighborhood Hits	350	Shared Neighborhood Hits	204
SwissProt Accessions	P23683	Gene names	Evx1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

EVX2_HUMAN
θ value	1.81305 (rank : 176)	NC score	0.192875 (rank : 205)
Query Neighborhood Hits	331	Target Neighborhood Hits	325	Shared Neighborhood Hits	198
SwissProt Accessions	Q03828	Gene names	EVX2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

EVX2_MOUSE
θ value	1.81305 (rank : 177)	NC score	0.195345 (rank : 202)
Query Neighborhood Hits	331	Target Neighborhood Hits	327	Shared Neighborhood Hits	201
SwissProt Accessions	P49749	Gene names	Evx2, Evx-2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

HXC12_HUMAN
θ value	1.81305 (rank : 178)	NC score	0.178046 (rank : 235)
Query Neighborhood Hits	331	Target Neighborhood Hits	313	Shared Neighborhood Hits	194
SwissProt Accessions	P31275, Q9BXJ6	Gene names	HOXC12, HOX3F
Domain Architecture
Description	Homeobox protein Hox-C12 (Hox-3F).

HXC12_MOUSE
θ value	1.81305 (rank : 179)	NC score	0.176430 (rank : 238)
Query Neighborhood Hits	331	Target Neighborhood Hits	316	Shared Neighborhood Hits	195
SwissProt Accessions	Q8K5B8	Gene names	Hoxc12, Hox-3.8, Hoxc-12
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C12 (Hox-3.8).

LASS2_MOUSE
θ value	1.81305 (rank : 180)	NC score	0.044923 (rank : 388)
Query Neighborhood Hits	331	Target Neighborhood Hits	51	Shared Neighborhood Hits	30
SwissProt Accessions	Q924Z4, Q3TXC5, Q9DCN6	Gene names	Lass2, Trh3
Domain Architecture	No domain graphic available
Description	LAG1 longevity assurance homolog 2 (Translocating chain-associating membrane protein homolog 3) (TRAM homolog 3).

NKX22_HUMAN
θ value	1.81305 (rank : 181)	NC score	0.211986 (rank : 156)
Query Neighborhood Hits	331	Target Neighborhood Hits	342	Shared Neighborhood Hits	211
SwissProt Accessions	O95096	Gene names	NKX2-2, NKX2.2, NKX2B
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

NKX22_MOUSE
θ value	1.81305 (rank : 182)	NC score	0.207212 (rank : 172)
Query Neighborhood Hits	331	Target Neighborhood Hits	336	Shared Neighborhood Hits	213
SwissProt Accessions	P42586	Gene names	Nkx2-2, Nkx-2.2, Nkx2b
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

SIX6_HUMAN
θ value	1.81305 (rank : 183)	NC score	0.227424 (rank : 117)
Query Neighborhood Hits	331	Target Neighborhood Hits	269	Shared Neighborhood Hits	182
SwissProt Accessions	O95475, Q9P1X8	Gene names	SIX6, OPTX2, SIX9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Homeodomain protein OPTX2).

SIX6_MOUSE
θ value	1.81305 (rank : 184)	NC score	0.224338 (rank : 123)
Query Neighborhood Hits	331	Target Neighborhood Hits	267	Shared Neighborhood Hits	184
SwissProt Accessions	Q9QZ28, O88423	Gene names	Six6, Optx2, Six9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Six9 protein).

ZFY1_MOUSE
θ value	1.81305 (rank : 185)	NC score	0.041744 (rank : 392)
Query Neighborhood Hits	331	Target Neighborhood Hits	790	Shared Neighborhood Hits	58
SwissProt Accessions	P10925	Gene names	Zfy1, Zfy-1
Domain Architecture
Description	Zinc finger Y-chromosomal protein 1.

ZN133_HUMAN
θ value	1.81305 (rank : 186)	NC score	0.020362 (rank : 440)
Query Neighborhood Hits	331	Target Neighborhood Hits	784	Shared Neighborhood Hits	56
SwissProt Accessions	P52736, Q9BUV2, Q9H443	Gene names	ZNF133
Domain Architecture
Description	Zinc finger protein 133.

ZN406_MOUSE
θ value	1.81305 (rank : 187)	NC score	0.037630 (rank : 399)
Query Neighborhood Hits	331	Target Neighborhood Hits	800	Shared Neighborhood Hits	58
SwissProt Accessions	Q7TS63	Gene names	Znf406, Zfp406
Domain Architecture	No domain graphic available
Description	Zinc finger protein 406.

ACD_HUMAN
θ value	2.36792 (rank : 188)	NC score	0.023510 (rank : 427)
Query Neighborhood Hits	331	Target Neighborhood Hits	143	Shared Neighborhood Hits	7
SwissProt Accessions	Q96AP0, Q562H5, Q9H8F9	Gene names	ACD, PIP1, PTOP
Domain Architecture	No domain graphic available
Description	Adrenocortical dysplasia protein homolog (POT1 and TIN2-interacting protein).

CDX4_HUMAN
θ value	2.36792 (rank : 189)	NC score	0.184293 (rank : 220)
Query Neighborhood Hits	331	Target Neighborhood Hits	366	Shared Neighborhood Hits	211
SwissProt Accessions	O14627, Q5JS20	Gene names	CDX4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

CRX_HUMAN
θ value	2.36792 (rank : 190)	NC score	0.248775 (rank : 54)
Query Neighborhood Hits	331	Target Neighborhood Hits	360	Shared Neighborhood Hits	208
SwissProt Accessions	O43186	Gene names	CRX, CORD2
Domain Architecture
Description	Cone-rod homeobox protein.

CRX_MOUSE
θ value	2.36792 (rank : 191)	NC score	0.244800 (rank : 69)
Query Neighborhood Hits	331	Target Neighborhood Hits	359	Shared Neighborhood Hits	206
SwissProt Accessions	O54751	Gene names	Crx
Domain Architecture
Description	Cone-rod homeobox protein.

CUTL2_HUMAN
θ value	2.36792 (rank : 192)	NC score	0.093484 (rank : 353)
Query Neighborhood Hits	331	Target Neighborhood Hits	906	Shared Neighborhood Hits	161
SwissProt Accessions	O14529	Gene names	CUTL2, KIAA0293
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

DBX1_MOUSE
θ value	2.36792 (rank : 193)	NC score	0.224048 (rank : 125)
Query Neighborhood Hits	331	Target Neighborhood Hits	346	Shared Neighborhood Hits	207
SwissProt Accessions	P52950	Gene names	Dbx1, Dbx
Domain Architecture
Description	Homeobox protein DBX1.

HIP1R_HUMAN
θ value	2.36792 (rank : 194)	NC score	0.012548 (rank : 454)
Query Neighborhood Hits	331	Target Neighborhood Hits	809	Shared Neighborhood Hits	17
SwissProt Accessions	O75146, Q9UED9	Gene names	HIP1R, HIP12, KIAA0655
Domain Architecture
Description	Huntingtin-interacting protein 1-related protein (Hip1-related) (Hip 12).

HXA1_HUMAN
θ value	2.36792 (rank : 195)	NC score	0.185920 (rank : 216)
Query Neighborhood Hits	331	Target Neighborhood Hits	334	Shared Neighborhood Hits	208
SwissProt Accessions	P49639, O43363	Gene names	HOXA1, HOX1F
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1F).

HXA1_MOUSE
θ value	2.36792 (rank : 196)	NC score	0.187530 (rank : 213)
Query Neighborhood Hits	331	Target Neighborhood Hits	341	Shared Neighborhood Hits	210
SwissProt Accessions	P09022, P15463	Gene names	Hoxa1, Era-1, Hox-1.6, Hoxa-1
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399).

LPIN3_HUMAN
θ value	2.36792 (rank : 197)	NC score	0.030835 (rank : 411)
Query Neighborhood Hits	331	Target Neighborhood Hits	92	Shared Neighborhood Hits	8
SwissProt Accessions	Q9BQK8, Q5TDB9, Q9NPY8, Q9UJE5	Gene names	LPIN3, LIPN3L
Domain Architecture	No domain graphic available
Description	Lipin-3 (Lipin 3-like).

MSX1_HUMAN
θ value	2.36792 (rank : 198)	NC score	0.202278 (rank : 181)
Query Neighborhood Hits	331	Target Neighborhood Hits	374	Shared Neighborhood Hits	204
SwissProt Accessions	P28360, Q96NY4	Gene names	MSX1, HOX7
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7).

OTX1_MOUSE
θ value	2.36792 (rank : 199)	NC score	0.239715 (rank : 79)
Query Neighborhood Hits	331	Target Neighborhood Hits	372	Shared Neighborhood Hits	209
SwissProt Accessions	P80205	Gene names	Otx1, Otx-1
Domain Architecture
Description	Homeobox protein OTX1.

PBX3_HUMAN
θ value	2.36792 (rank : 200)	NC score	0.167899 (rank : 259)
Query Neighborhood Hits	331	Target Neighborhood Hits	306	Shared Neighborhood Hits	186
SwissProt Accessions	P40426, Q96PF9, Q96PG0	Gene names	PBX3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX3_MOUSE
θ value	2.36792 (rank : 201)	NC score	0.167915 (rank : 258)
Query Neighborhood Hits	331	Target Neighborhood Hits	306	Shared Neighborhood Hits	186
SwissProt Accessions	O35317, Q925W2	Gene names	Pbx3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PDE4D_HUMAN
θ value	2.36792 (rank : 202)	NC score	0.009859 (rank : 458)
Query Neighborhood Hits	331	Target Neighborhood Hits	122	Shared Neighborhood Hits	6
SwissProt Accessions	Q08499, O43433, Q13549, Q13550, Q13551, Q7Z2L8, Q8IV84, Q8IVA9, Q8IVD2, Q8IVD3, Q9HCX7	Gene names	PDE4D
Domain Architecture
Description	cAMP-specific 3',5'-cyclic phosphodiesterase 4D (EC 3.1.4.17) (DPDE3) (PDE43).

PKNX1_HUMAN
θ value	2.36792 (rank : 203)	NC score	0.121557 (rank : 335)
Query Neighborhood Hits	331	Target Neighborhood Hits	101	Shared Neighborhood Hits	66
SwissProt Accessions	P55347, O00528, Q8IWT7	Gene names	PKNOX1, PREP1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1) (Homeobox protein PREP-1).

PO4F1_HUMAN
θ value	2.36792 (rank : 204)	NC score	0.150554 (rank : 292)
Query Neighborhood Hits	331	Target Neighborhood Hits	342	Shared Neighborhood Hits	188
SwissProt Accessions	Q01851, Q14986, Q15318	Gene names	POU4F1, BRN3A, RDC1
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Oct-T1) (Homeobox/POU domain protein RDC-1).

PO4F1_MOUSE
θ value	2.36792 (rank : 205)	NC score	0.151540 (rank : 290)
Query Neighborhood Hits	331	Target Neighborhood Hits	345	Shared Neighborhood Hits	188
SwissProt Accessions	P17208	Gene names	Pou4f1, Brn-3, Brn3, Brn3a
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Brn-3.0).

TLX1_MOUSE
θ value	2.36792 (rank : 206)	NC score	0.194797 (rank : 203)
Query Neighborhood Hits	331	Target Neighborhood Hits	347	Shared Neighborhood Hits	207
SwissProt Accessions	P43345	Gene names	Tlx1, Hox11, Tlx-1
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (Homeobox TLX-1).

TLX3_HUMAN
θ value	2.36792 (rank : 207)	NC score	0.188586 (rank : 209)
Query Neighborhood Hits	331	Target Neighborhood Hits	403	Shared Neighborhood Hits	210
SwissProt Accessions	O43711, Q96AD3	Gene names	TLX3, HOX11L2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox protein Hox-11L2).

ZFY2_MOUSE
θ value	2.36792 (rank : 208)	NC score	0.041807 (rank : 391)
Query Neighborhood Hits	331	Target Neighborhood Hits	795	Shared Neighborhood Hits	58
SwissProt Accessions	P20662	Gene names	Zfy2, Zfy-2
Domain Architecture
Description	Zinc finger Y-chromosomal protein 2.

ZN592_MOUSE
θ value	2.36792 (rank : 209)	NC score	0.032717 (rank : 406)
Query Neighborhood Hits	331	Target Neighborhood Hits	768	Shared Neighborhood Hits	54
SwissProt Accessions	Q8BHZ4, Q80XM1	Gene names	Znf592, Kiaa0211, Zfp592
Domain Architecture	No domain graphic available
Description	Zinc finger protein 592 (Zfp-592).

BARX2_HUMAN
θ value	3.0926 (rank : 210)	NC score	0.195787 (rank : 200)
Query Neighborhood Hits	331	Target Neighborhood Hits	387	Shared Neighborhood Hits	210
SwissProt Accessions	Q9UMQ3, O43518	Gene names	BARX2
Domain Architecture
Description	Homeobox protein BarH-like 2.

DLX2_HUMAN
θ value	3.0926 (rank : 211)	NC score	0.230286 (rank : 104)
Query Neighborhood Hits	331	Target Neighborhood Hits	355	Shared Neighborhood Hits	219
SwissProt Accessions	Q07687	Gene names	DLX2
Domain Architecture
Description	Homeobox protein DLX-2.

DLX2_MOUSE
θ value	3.0926 (rank : 212)	NC score	0.229602 (rank : 105)
Query Neighborhood Hits	331	Target Neighborhood Hits	352	Shared Neighborhood Hits	220
SwissProt Accessions	P40764	Gene names	Dlx2, Tes-1, Tes1
Domain Architecture
Description	Homeobox protein DLX-2 (Homeobox protein TES-1).

HXC11_HUMAN
θ value	3.0926 (rank : 213)	NC score	0.168512 (rank : 254)
Query Neighborhood Hits	331	Target Neighborhood Hits	349	Shared Neighborhood Hits	206
SwissProt Accessions	O43248, Q96DH2	Gene names	HOXC11
Domain Architecture
Description	Homeobox protein Hox-C11.

HXC4_HUMAN
θ value	3.0926 (rank : 214)	NC score	0.162941 (rank : 267)
Query Neighborhood Hits	331	Target Neighborhood Hits	361	Shared Neighborhood Hits	207
SwissProt Accessions	P09017	Gene names	HOXC4, HOX3E
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3E) (CP19).

HXC4_MOUSE
θ value	3.0926 (rank : 215)	NC score	0.167333 (rank : 261)
Query Neighborhood Hits	331	Target Neighborhood Hits	365	Shared Neighborhood Hits	206
SwissProt Accessions	Q08624	Gene names	Hoxc4, Hox-3.5, Hoxc-4
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3.5).

HXD12_HUMAN
θ value	3.0926 (rank : 216)	NC score	0.202149 (rank : 182)
Query Neighborhood Hits	331	Target Neighborhood Hits	334	Shared Neighborhood Hits	201
SwissProt Accessions	P35452, Q9NS03	Gene names	HOXD12, HOX4H
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4H).

HXD12_MOUSE
θ value	3.0926 (rank : 217)	NC score	0.200249 (rank : 188)
Query Neighborhood Hits	331	Target Neighborhood Hits	370	Shared Neighborhood Hits	203
SwissProt Accessions	P23812	Gene names	Hoxd12, Hox-4.7, Hoxd-12
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4.7) (Hox-5.6).

K1C16_MOUSE
θ value	3.0926 (rank : 218)	NC score	0.001934 (rank : 482)
Query Neighborhood Hits	331	Target Neighborhood Hits	444	Shared Neighborhood Hits	13
SwissProt Accessions	Q9Z2K1	Gene names	Krt16, Krt1-16
Domain Architecture
Description	Keratin, type I cytoskeletal 16 (Cytokeratin-16) (CK-16) (Keratin-16) (K16).

KCNH8_HUMAN
θ value	3.0926 (rank : 219)	NC score	0.006807 (rank : 465)
Query Neighborhood Hits	331	Target Neighborhood Hits	104	Shared Neighborhood Hits	3
SwissProt Accessions	Q96L42	Gene names	KCNH8
Domain Architecture
Description	Potassium voltage-gated channel subfamily H member 8 (Voltage-gated potassium channel subunit Kv12.1) (Ether-a-go-go-like potassium channel 3) (ELK channel 3) (ELK3) (ELK1) (hElk1).

LMX1A_HUMAN
θ value	3.0926 (rank : 220)	NC score	0.200786 (rank : 186)
Query Neighborhood Hits	331	Target Neighborhood Hits	406	Shared Neighborhood Hits	197
SwissProt Accessions	Q8TE12, Q8TE11	Gene names	LMX1A
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

LMX1A_MOUSE
θ value	3.0926 (rank : 221)	NC score	0.201107 (rank : 184)
Query Neighborhood Hits	331	Target Neighborhood Hits	405	Shared Neighborhood Hits	195
SwissProt Accessions	Q9JKU8	Gene names	Lmx1a
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

LMX1B_HUMAN
θ value	3.0926 (rank : 222)	NC score	0.201020 (rank : 185)
Query Neighborhood Hits	331	Target Neighborhood Hits	404	Shared Neighborhood Hits	193
SwissProt Accessions	O60663, O75463	Gene names	LMX1B
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

LMX1B_MOUSE
θ value	3.0926 (rank : 223)	NC score	0.203044 (rank : 177)
Query Neighborhood Hits	331	Target Neighborhood Hits	394	Shared Neighborhood Hits	192
SwissProt Accessions	O88609	Gene names	Lmx1b
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

MAGE2_HUMAN
θ value	3.0926 (rank : 224)	NC score	0.007526 (rank : 464)
Query Neighborhood Hits	331	Target Neighborhood Hits	43	Shared Neighborhood Hits	2
SwissProt Accessions	Q8TD90	Gene names	MAGEE2, HCA3
Domain Architecture	No domain graphic available
Description	Melanoma-associated antigen E2 (MAGE-E2 antigen) (Hepatocellular carcinoma-associated protein 3).

MSX1_MOUSE
θ value	3.0926 (rank : 225)	NC score	0.201135 (rank : 183)
Query Neighborhood Hits	331	Target Neighborhood Hits	322	Shared Neighborhood Hits	202
SwissProt Accessions	P13297	Gene names	Msx1, Hox7, Hox7.1
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7) (Hox- 7.1).

NIN_MOUSE
θ value	3.0926 (rank : 226)	NC score	0.006547 (rank : 466)
Query Neighborhood Hits	331	Target Neighborhood Hits	1376	Shared Neighborhood Hits	19
SwissProt Accessions	Q61043, Q6ZPM7	Gene names	Nin, Kiaa1565
Domain Architecture	No domain graphic available
Description	Ninein.

NKX24_MOUSE
θ value	3.0926 (rank : 227)	NC score	0.207752 (rank : 169)
Query Neighborhood Hits	331	Target Neighborhood Hits	356	Shared Neighborhood Hits	211
SwissProt Accessions	Q9EQM3, Q9EQM4	Gene names	Nkx2-4, Nkx2d
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

OVOL2_HUMAN
θ value	3.0926 (rank : 228)	NC score	0.025752 (rank : 424)
Query Neighborhood Hits	331	Target Neighborhood Hits	715	Shared Neighborhood Hits	54
SwissProt Accessions	Q9BRP0, Q5T8B4, Q9BX22, Q9HA54, Q9Y4M0	Gene names	OVOL2, ZNF339
Domain Architecture	No domain graphic available
Description	Transcription factor Ovo-like 2 (hOvo2) (Zinc finger protein 339).

PBX2_HUMAN
θ value	3.0926 (rank : 229)	NC score	0.180168 (rank : 229)
Query Neighborhood Hits	331	Target Neighborhood Hits	350	Shared Neighborhood Hits	191
SwissProt Accessions	P40425	Gene names	PBX2, G17
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2) (Protein G17).

PBX2_MOUSE
θ value	3.0926 (rank : 230)	NC score	0.180138 (rank : 230)
Query Neighborhood Hits	331	Target Neighborhood Hits	341	Shared Neighborhood Hits	191
SwissProt Accessions	O35984	Gene names	Pbx2
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2).

PEPP1_HUMAN
θ value	3.0926 (rank : 231)	NC score	0.265703 (rank : 28)
Query Neighborhood Hits	331	Target Neighborhood Hits	338	Shared Neighborhood Hits	208
SwissProt Accessions	Q8NHV9, O95030, Q3SYE0	Gene names	PEPP1, OTEX
Domain Architecture
Description	Paired-like homeobox protein PEPP-1 (Ovary-, testis- and epididymis- expressed gene protein).

PKNX1_MOUSE
θ value	3.0926 (rank : 232)	NC score	0.129123 (rank : 332)
Query Neighborhood Hits	331	Target Neighborhood Hits	103	Shared Neighborhood Hits	66
SwissProt Accessions	O70477	Gene names	Pknox1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1).

PO3F2_HUMAN
θ value	3.0926 (rank : 233)	NC score	0.148745 (rank : 295)
Query Neighborhood Hits	331	Target Neighborhood Hits	308	Shared Neighborhood Hits	189
SwissProt Accessions	P20265, Q14960, Q86V54, Q9UJL0	Gene names	POU3F2, BRN2, OCT7, OTF7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

PO3F2_MOUSE
θ value	3.0926 (rank : 234)	NC score	0.148806 (rank : 293)
Query Neighborhood Hits	331	Target Neighborhood Hits	313	Shared Neighborhood Hits	190
SwissProt Accessions	P31360	Gene names	Pou3f2, Brn-2, Brn2, Otf7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

PO4F2_HUMAN
θ value	3.0926 (rank : 235)	NC score	0.148715 (rank : 296)
Query Neighborhood Hits	331	Target Neighborhood Hits	310	Shared Neighborhood Hits	183
SwissProt Accessions	Q12837, Q13883, Q14987	Gene names	POU4F2, BRN3B
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B).

PO4F2_MOUSE
θ value	3.0926 (rank : 236)	NC score	0.148769 (rank : 294)
Query Neighborhood Hits	331	Target Neighborhood Hits	312	Shared Neighborhood Hits	183
SwissProt Accessions	Q63934, Q63954	Gene names	Pou4f2, Brn3b
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B) (Brn-3.2).

PO4F3_HUMAN
θ value	3.0926 (rank : 237)	NC score	0.147494 (rank : 303)
Query Neighborhood Hits	331	Target Neighborhood Hits	307	Shared Neighborhood Hits	182
SwissProt Accessions	Q15319, O60557	Gene names	POU4F3, BRN3C
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

PO4F3_MOUSE
θ value	3.0926 (rank : 238)	NC score	0.147506 (rank : 302)
Query Neighborhood Hits	331	Target Neighborhood Hits	311	Shared Neighborhood Hits	182
SwissProt Accessions	Q63955	Gene names	Pou4f3, Brn-3c, Brn3c
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

TCF8_MOUSE
θ value	3.0926 (rank : 239)	NC score	0.031117 (rank : 410)
Query Neighborhood Hits	331	Target Neighborhood Hits	1067	Shared Neighborhood Hits	96
SwissProt Accessions	Q64318, Q62519	Gene names	Tcf8, Zfhx1a, Zfx1a, Zfx1ha
Domain Architecture
Description	Transcription factor 8 (Zinc finger homeobox protein 1a) (MEB1) (Delta EF1).

TLX1_HUMAN
θ value	3.0926 (rank : 240)	NC score	0.196791 (rank : 196)
Query Neighborhood Hits	331	Target Neighborhood Hits	347	Shared Neighborhood Hits	209
SwissProt Accessions	P31314, O75699, Q9HCA0	Gene names	TLX1, HOX11, TCL3
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (TCL-3 proto-oncogene).

ALEX_HUMAN
θ value	4.03905 (rank : 241)	NC score	0.021960 (rank : 434)
Query Neighborhood Hits	331	Target Neighborhood Hits	361	Shared Neighborhood Hits	19
SwissProt Accessions	P84996	Gene names	GNAS, GNAS1
Domain Architecture	No domain graphic available
Description	Protein ALEX (Alternative gene product encoded by XL-exon).

CBP_HUMAN
θ value	4.03905 (rank : 242)	NC score	0.027141 (rank : 421)
Query Neighborhood Hits	331	Target Neighborhood Hits	941	Shared Neighborhood Hits	40
SwissProt Accessions	Q92793, O00147, Q16376	Gene names	CREBBP, CBP
Domain Architecture
Description	CREB-binding protein (EC 2.3.1.48).

CBP_MOUSE
θ value	4.03905 (rank : 243)	NC score	0.019642 (rank : 442)
Query Neighborhood Hits	331	Target Neighborhood Hits	1051	Shared Neighborhood Hits	36
SwissProt Accessions	P45481	Gene names	Crebbp, Cbp
Domain Architecture
Description	CREB-binding protein (EC 2.3.1.48).

CIC_HUMAN
θ value	4.03905 (rank : 244)	NC score	0.022937 (rank : 429)
Query Neighborhood Hits	331	Target Neighborhood Hits	992	Shared Neighborhood Hits	43
SwissProt Accessions	Q96RK0, Q7LGI1, Q9UEG5, Q9Y6T1	Gene names	CIC, KIAA0306
Domain Architecture	No domain graphic available
Description	Protein capicua homolog.

HME2_HUMAN
θ value	4.03905 (rank : 245)	NC score	0.224139 (rank : 124)
Query Neighborhood Hits	331	Target Neighborhood Hits	355	Shared Neighborhood Hits	215
SwissProt Accessions	P19622	Gene names	EN2
Domain Architecture
Description	Homeobox protein engrailed-2 (Hu-En-2).

HME2_MOUSE
θ value	4.03905 (rank : 246)	NC score	0.223877 (rank : 126)
Query Neighborhood Hits	331	Target Neighborhood Hits	352	Shared Neighborhood Hits	215
SwissProt Accessions	P09066	Gene names	En2, En-2
Domain Architecture
Description	Homeobox protein engrailed-2 (Mo-En-2).

HXB1_HUMAN
θ value	4.03905 (rank : 247)	NC score	0.181833 (rank : 227)
Query Neighborhood Hits	331	Target Neighborhood Hits	356	Shared Neighborhood Hits	212
SwissProt Accessions	P14653	Gene names	HOXB1, HOX2I
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2I).

HXB1_MOUSE
θ value	4.03905 (rank : 248)	NC score	0.181913 (rank : 226)
Query Neighborhood Hits	331	Target Neighborhood Hits	341	Shared Neighborhood Hits	210
SwissProt Accessions	P17919, Q3ZAY6, Q9CYH3	Gene names	Hoxb1, Hox-2.9, Hoxb-1
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2.9).

IF4G3_MOUSE
θ value	4.03905 (rank : 249)	NC score	0.014499 (rank : 450)
Query Neighborhood Hits	331	Target Neighborhood Hits	279	Shared Neighborhood Hits	16
SwissProt Accessions	Q80XI3, Q80Y69, Q8BJ68, Q8BQF3, Q8C6Q3, Q8CIH0	Gene names	Eif4g3
Domain Architecture
Description	Eukaryotic translation initiation factor 4 gamma 3 (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII).

LASS3_HUMAN
θ value	4.03905 (rank : 250)	NC score	0.028554 (rank : 416)
Query Neighborhood Hits	331	Target Neighborhood Hits	70	Shared Neighborhood Hits	29
SwissProt Accessions	Q8IU89, Q8NE64, Q8NEN6	Gene names	LASS3
Domain Architecture	No domain graphic available
Description	LAG1 longevity assurance homolog 3.

MARCS_HUMAN
θ value	4.03905 (rank : 251)	NC score	0.017698 (rank : 448)
Query Neighborhood Hits	331	Target Neighborhood Hits	204	Shared Neighborhood Hits	10
SwissProt Accessions	P29966, Q2LA83, Q5TDB7	Gene names	MARCKS, MACS, PRKCSL
Domain Architecture	No domain graphic available
Description	Myristoylated alanine-rich C-kinase substrate (MARCKS) (Protein kinase C substrate, 80 kDa protein, light chain) (PKCSL) (80K-L protein).

MYOC_HUMAN
θ value	4.03905 (rank : 252)	NC score	0.005873 (rank : 472)
Query Neighborhood Hits	331	Target Neighborhood Hits	489	Shared Neighborhood Hits	8
SwissProt Accessions	Q99972, O00620, Q7Z6Q9	Gene names	MYOC, GLC1A, TIGR
Domain Architecture
Description	Myocilin precursor (Trabecular meshwork-induced glucocorticoid response protein).

PBX1_HUMAN
θ value	4.03905 (rank : 253)	NC score	0.168489 (rank : 255)
Query Neighborhood Hits	331	Target Neighborhood Hits	317	Shared Neighborhood Hits	181
SwissProt Accessions	P40424	Gene names	PBX1, PRL
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1) (Homeobox protein PRL).

PBX1_MOUSE
θ value	4.03905 (rank : 254)	NC score	0.168489 (rank : 256)
Query Neighborhood Hits	331	Target Neighborhood Hits	317	Shared Neighborhood Hits	181
SwissProt Accessions	P41778	Gene names	Pbx1, Pbx-1
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1).

PIT1_MOUSE
θ value	4.03905 (rank : 255)	NC score	0.166679 (rank : 262)
Query Neighborhood Hits	331	Target Neighborhood Hits	313	Shared Neighborhood Hits	194
SwissProt Accessions	Q00286	Gene names	Pou1f1, Pit-1, Pit1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

SMAL1_HUMAN
θ value	4.03905 (rank : 256)	NC score	0.009402 (rank : 459)
Query Neighborhood Hits	331	Target Neighborhood Hits	174	Shared Neighborhood Hits	10
SwissProt Accessions	Q9NZC9, Q96AY1, Q9NXQ5, Q9UFH3, Q9UI93	Gene names	SMARCAL1, HARP
Domain Architecture	No domain graphic available
Description	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 1) (HepA-related protein) (hHARP).

SRCA_HUMAN
θ value	4.03905 (rank : 257)	NC score	0.019727 (rank : 441)
Query Neighborhood Hits	331	Target Neighborhood Hits	380	Shared Neighborhood Hits	18
SwissProt Accessions	Q86TD4	Gene names	SRL
Domain Architecture	No domain graphic available
Description	Sarcalumenin precursor.

USH2A_MOUSE
θ value	4.03905 (rank : 258)	NC score	0.000561 (rank : 484)
Query Neighborhood Hits	331	Target Neighborhood Hits	626	Shared Neighborhood Hits	11
SwissProt Accessions	Q2QI47, Q9JLP3	Gene names	Ush2A
Domain Architecture	No domain graphic available
Description	Usherin precursor (Usher syndrome type-2A protein homolog) (Usher syndrome type IIa protein homolog).

VAX1_HUMAN
θ value	4.03905 (rank : 259)	NC score	0.213427 (rank : 148)
Query Neighborhood Hits	331	Target Neighborhood Hits	355	Shared Neighborhood Hits	211
SwissProt Accessions	Q5SQQ9, Q6ZSX0	Gene names	VAX1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

VAX1_MOUSE
θ value	4.03905 (rank : 260)	NC score	0.212999 (rank : 150)
Query Neighborhood Hits	331	Target Neighborhood Hits	351	Shared Neighborhood Hits	210
SwissProt Accessions	Q2NKI2, O88880	Gene names	Vax1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

ZN460_HUMAN
θ value	4.03905 (rank : 261)	NC score	0.018616 (rank : 446)
Query Neighborhood Hits	331	Target Neighborhood Hits	745	Shared Neighborhood Hits	52
SwissProt Accessions	Q14592, Q6VSF8	Gene names	ZNF460, ZNF272
Domain Architecture	No domain graphic available
Description	Zinc finger protein 460 (Zinc finger protein 272) (Zinc finger protein HZF8).

ATN1_HUMAN
θ value	5.27518 (rank : 262)	NC score	0.015710 (rank : 449)
Query Neighborhood Hits	331	Target Neighborhood Hits	676	Shared Neighborhood Hits	27
SwissProt Accessions	P54259, Q99495, Q99621, Q9UEK7	Gene names	ATN1, DRPLA
Domain Architecture
Description	Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein).

ATRX_HUMAN
θ value	5.27518 (rank : 263)	NC score	0.008233 (rank : 462)
Query Neighborhood Hits	331	Target Neighborhood Hits	842	Shared Neighborhood Hits	26
SwissProt Accessions	P46100, P51068, Q15886, Q59FB5, Q59H31, Q5H9A2, Q5JWI4, Q7Z2J1, Q9H0Z1, Q9NTS3	Gene names	ATRX, RAD54L, XH2
Domain Architecture
Description	Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent helicase ATRX) (X-linked helicase II) (X-linked nuclear protein) (XNP) (Znf- HX).

CCD21_MOUSE
θ value	5.27518 (rank : 264)	NC score	0.012612 (rank : 453)
Query Neighborhood Hits	331	Target Neighborhood Hits	1135	Shared Neighborhood Hits	28
SwissProt Accessions	Q8BMK0, Q8BUF1, Q8K0E6	Gene names	Ccdc21
Domain Architecture	No domain graphic available
Description	Coiled-coil domain-containing protein 21.

CHX10_HUMAN
θ value	5.27518 (rank : 265)	NC score	0.215579 (rank : 141)
Query Neighborhood Hits	331	Target Neighborhood Hits	340	Shared Neighborhood Hits	202
SwissProt Accessions	P58304	Gene names	CHX10, VSX2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

DYXC1_MOUSE
θ value	5.27518 (rank : 266)	NC score	0.011297 (rank : 456)
Query Neighborhood Hits	331	Target Neighborhood Hits	172	Shared Neighborhood Hits	8
SwissProt Accessions	Q8R368	Gene names	Dyx1c1, Ekn1
Domain Architecture
Description	Dyslexia susceptibility 1 candidate gene 1 protein homolog.

F10A4_HUMAN
θ value	5.27518 (rank : 267)	NC score	0.008858 (rank : 461)
Query Neighborhood Hits	331	Target Neighborhood Hits	249	Shared Neighborhood Hits	11
SwissProt Accessions	Q8IZP2	Gene names	FAM10A4
Domain Architecture	No domain graphic available
Description	Protein FAM10A4.

GOGA4_HUMAN
θ value	5.27518 (rank : 268)	NC score	0.004665 (rank : 479)
Query Neighborhood Hits	331	Target Neighborhood Hits	2034	Shared Neighborhood Hits	28
SwissProt Accessions	Q13439, Q13270, Q13654, Q14436	Gene names	GOLGA4
Domain Architecture
Description	Golgin subfamily A member 4 (Trans-Golgi p230) (256 kDa golgin) (Golgin-245) (Protein 72.1).

HXD1_MOUSE
θ value	5.27518 (rank : 269)	NC score	0.173374 (rank : 245)
Query Neighborhood Hits	331	Target Neighborhood Hits	381	Shared Neighborhood Hits	208
SwissProt Accessions	Q01822	Gene names	Hoxd1, Hox-4.9, Hoxd-1
Domain Architecture
Description	Homeobox protein Hox-D1 (Hox-4.9).

HXD8_HUMAN
θ value	5.27518 (rank : 270)	NC score	0.158540 (rank : 278)
Query Neighborhood Hits	331	Target Neighborhood Hits	338	Shared Neighborhood Hits	205
SwissProt Accessions	P13378	Gene names	HOXD8, HOX4E
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4).

K1802_HUMAN
θ value	5.27518 (rank : 271)	NC score	0.036099 (rank : 401)
Query Neighborhood Hits	331	Target Neighborhood Hits	1378	Shared Neighborhood Hits	77
SwissProt Accessions	Q96JM3, Q6P181, Q8NC88, Q9BST0	Gene names	KIAA1802, C13orf8
Domain Architecture	No domain graphic available
Description	Zinc finger protein KIAA1802.

NKX24_HUMAN
θ value	5.27518 (rank : 272)	NC score	0.205634 (rank : 175)
Query Neighborhood Hits	331	Target Neighborhood Hits	366	Shared Neighborhood Hits	211
SwissProt Accessions	Q9H2Z4	Gene names	NKX2-4, NKX2D
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

NKX28_MOUSE
θ value	5.27518 (rank : 273)	NC score	0.213988 (rank : 145)
Query Neighborhood Hits	331	Target Neighborhood Hits	347	Shared Neighborhood Hits	219
SwissProt Accessions	O70584	Gene names	Nkx2-8, Nkx-2.9, Nkx2-9, Nkx2h
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H) (Homeobox protein Nkx-2.9).

OTP_MOUSE
θ value	5.27518 (rank : 274)	NC score	0.251437 (rank : 47)
Query Neighborhood Hits	331	Target Neighborhood Hits	387	Shared Neighborhood Hits	216
SwissProt Accessions	O09113	Gene names	Otp
Domain Architecture
Description	Homeobox protein orthopedia.

OTX2_MOUSE
θ value	5.27518 (rank : 275)	NC score	0.236480 (rank : 86)
Query Neighborhood Hits	331	Target Neighborhood Hits	345	Shared Neighborhood Hits	204
SwissProt Accessions	P80206	Gene names	Otx2, Otx-2
Domain Architecture
Description	Homeobox protein OTX2.

TITF1_HUMAN
θ value	5.27518 (rank : 276)	NC score	0.208723 (rank : 166)
Query Neighborhood Hits	331	Target Neighborhood Hits	332	Shared Neighborhood Hits	210
SwissProt Accessions	P43699, O14954, O14955, Q9BRJ8	Gene names	TITF1, NKX2-1, NKX2A, TTF1
Domain Architecture
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1) (Homeobox protein NK-2 homolog A).

TITF1_MOUSE
θ value	5.27518 (rank : 277)	NC score	0.208408 (rank : 167)
Query Neighborhood Hits	331	Target Neighborhood Hits	335	Shared Neighborhood Hits	210
SwissProt Accessions	P50220	Gene names	Titf1, Nkx-2.1, Nkx2-1, Ttf1
Domain Architecture	No domain graphic available
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1).

ZN442_HUMAN
θ value	5.27518 (rank : 278)	NC score	0.019340 (rank : 443)
Query Neighborhood Hits	331	Target Neighborhood Hits	744	Shared Neighborhood Hits	52
SwissProt Accessions	Q9H7R0	Gene names	ZNF442
Domain Architecture
Description	Zinc finger protein 442.

ZN541_HUMAN
θ value	5.27518 (rank : 279)	NC score	0.013683 (rank : 451)
Query Neighborhood Hits	331	Target Neighborhood Hits	203	Shared Neighborhood Hits	14
SwissProt Accessions	Q9H0D2, Q8NDK8	Gene names	ZNF541
Domain Architecture	No domain graphic available
Description	Zinc finger protein 541.

ZN592_HUMAN
θ value	5.27518 (rank : 280)	NC score	0.032839 (rank : 404)
Query Neighborhood Hits	331	Target Neighborhood Hits	762	Shared Neighborhood Hits	54
SwissProt Accessions	Q92610	Gene names	ZNF592, KIAA0211
Domain Architecture	No domain graphic available
Description	Zinc finger protein 592.

ZNF16_HUMAN
θ value	5.27518 (rank : 281)	NC score	0.020369 (rank : 439)
Query Neighborhood Hits	331	Target Neighborhood Hits	771	Shared Neighborhood Hits	54
SwissProt Accessions	P17020, Q96FG0	Gene names	ZNF16, KOX9
Domain Architecture	No domain graphic available
Description	Zinc finger protein 16 (Zinc finger protein KOX9).

BSN_HUMAN
θ value	6.88961 (rank : 282)	NC score	0.027300 (rank : 420)
Query Neighborhood Hits	331	Target Neighborhood Hits	1537	Shared Neighborhood Hits	50
SwissProt Accessions	Q9UPA5, O43161, Q7LGH3	Gene names	BSN, KIAA0434, ZNF231
Domain Architecture	No domain graphic available
Description	Protein bassoon (Zinc finger protein 231).

BSN_MOUSE
θ value	6.88961 (rank : 283)	NC score	0.028806 (rank : 415)
Query Neighborhood Hits	331	Target Neighborhood Hits	2057	Shared Neighborhood Hits	74
SwissProt Accessions	O88737, Q6ZQB5	Gene names	Bsn, Kiaa0434
Domain Architecture	No domain graphic available
Description	Protein bassoon.

CCD39_MOUSE
θ value	6.88961 (rank : 284)	NC score	0.004895 (rank : 477)
Query Neighborhood Hits	331	Target Neighborhood Hits	1026	Shared Neighborhood Hits	17
SwissProt Accessions	Q9D5Y1, Q8CDG6	Gene names	Ccdc39, D3Ertd789e
Domain Architecture	No domain graphic available
Description	Coiled-coil domain-containing protein 39.

CHX10_MOUSE
θ value	6.88961 (rank : 285)	NC score	0.217412 (rank : 134)
Query Neighborhood Hits	331	Target Neighborhood Hits	340	Shared Neighborhood Hits	202
SwissProt Accessions	Q61412	Gene names	Chx10, Vsx2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

FOXP4_HUMAN
θ value	6.88961 (rank : 286)	NC score	0.006433 (rank : 468)
Query Neighborhood Hits	331	Target Neighborhood Hits	246	Shared Neighborhood Hits	16
SwissProt Accessions	Q8IVH2, Q96E19	Gene names	FOXP4, FKHLA
Domain Architecture
Description	Forkhead box protein P4 (Fork head-related protein-like A).

GSH2_HUMAN
θ value	6.88961 (rank : 287)	NC score	0.177526 (rank : 236)
Query Neighborhood Hits	331	Target Neighborhood Hits	324	Shared Neighborhood Hits	201
SwissProt Accessions	Q9BZM3	Gene names	GSH2
Domain Architecture
Description	Homeobox protein GSH-2.

HCN4_HUMAN
θ value	6.88961 (rank : 288)	NC score	0.005947 (rank : 470)
Query Neighborhood Hits	331	Target Neighborhood Hits	303	Shared Neighborhood Hits	19
SwissProt Accessions	Q9Y3Q4, Q9UMQ7	Gene names	HCN4
Domain Architecture
Description	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4.

HME1_HUMAN
θ value	6.88961 (rank : 289)	NC score	0.216475 (rank : 139)
Query Neighborhood Hits	331	Target Neighborhood Hits	384	Shared Neighborhood Hits	209
SwissProt Accessions	Q05925	Gene names	EN1
Domain Architecture
Description	Homeobox protein engrailed-1 (Hu-En-1).

HME1_MOUSE
θ value	6.88961 (rank : 290)	NC score	0.216599 (rank : 138)
Query Neighborhood Hits	331	Target Neighborhood Hits	397	Shared Neighborhood Hits	210
SwissProt Accessions	P09065	Gene names	En1, En-1
Domain Architecture
Description	Homeobox protein engrailed-1 (Mo-En-1).

HXD1_HUMAN
θ value	6.88961 (rank : 291)	NC score	0.169716 (rank : 251)
Query Neighborhood Hits	331	Target Neighborhood Hits	337	Shared Neighborhood Hits	206
SwissProt Accessions	Q9GZZ0	Gene names	HOXD1
Domain Architecture
Description	Homeobox protein Hox-D1.

MEIS2_HUMAN
θ value	6.88961 (rank : 292)	NC score	0.099429 (rank : 344)
Query Neighborhood Hits	331	Target Neighborhood Hits	182	Shared Neighborhood Hits	88
SwissProt Accessions	O14770, Q96KI4, Q96KI5, Q9NRS1, Q9NRS2, Q9NRS3	Gene names	MEIS2, MRG1
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

MEIS2_MOUSE
θ value	6.88961 (rank : 293)	NC score	0.099132 (rank : 345)
Query Neighborhood Hits	331	Target Neighborhood Hits	208	Shared Neighborhood Hits	90
SwissProt Accessions	P97367, O35676, O35677, P97403, P97404	Gene names	Meis2, Mrg1, Stra10
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

PIT1_HUMAN
θ value	6.88961 (rank : 294)	NC score	0.163824 (rank : 266)
Query Neighborhood Hits	331	Target Neighborhood Hits	292	Shared Neighborhood Hits	184
SwissProt Accessions	P28069, O75757, Q15132, Q15133, Q9UEL3	Gene names	POU1F1, GHF1, PIT1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

PKNX2_HUMAN
θ value	6.88961 (rank : 295)	NC score	0.092264 (rank : 354)
Query Neighborhood Hits	331	Target Neighborhood Hits	133	Shared Neighborhood Hits	63
SwissProt Accessions	Q96KN3, Q63HL6, Q86XD1	Gene names	PKNOX2, PREP2
Domain Architecture
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

PKNX2_MOUSE
θ value	6.88961 (rank : 296)	NC score	0.094016 (rank : 352)
Query Neighborhood Hits	331	Target Neighborhood Hits	197	Shared Neighborhood Hits	67
SwissProt Accessions	Q8BG99, Q8R4B0	Gene names	Pknox2, Prep2
Domain Architecture	No domain graphic available
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

PO3F1_HUMAN
θ value	6.88961 (rank : 297)	NC score	0.146551 (rank : 305)
Query Neighborhood Hits	331	Target Neighborhood Hits	256	Shared Neighborhood Hits	169
SwissProt Accessions	Q03052	Gene names	POU3F1, OCT6, OTF6
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

PO3F1_MOUSE
θ value	6.88961 (rank : 298)	NC score	0.147924 (rank : 297)
Query Neighborhood Hits	331	Target Neighborhood Hits	261	Shared Neighborhood Hits	171
SwissProt Accessions	P21952	Gene names	Pou3f1, Oct6, Otf-6, Otf6, Scip
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

SUHW3_HUMAN
θ value	6.88961 (rank : 299)	NC score	0.032521 (rank : 407)
Query Neighborhood Hits	331	Target Neighborhood Hits	695	Shared Neighborhood Hits	49
SwissProt Accessions	Q8ND82, Q9NXR3	Gene names	SUHW3
Domain Architecture	No domain graphic available
Description	Suppressor of hairy wing homolog 3.

SYDM_HUMAN
θ value	6.88961 (rank : 300)	NC score	0.011470 (rank : 455)
Query Neighborhood Hits	331	Target Neighborhood Hits	18	Shared Neighborhood Hits	3
SwissProt Accessions	Q6PI48	Gene names	DARS2
Domain Architecture	No domain graphic available
Description	Aspartyl-tRNA synthetase, mitochondrial precursor (EC 6.1.1.12) (Aspartate--tRNA ligase) (AspRS).

TSH1_HUMAN
θ value	6.88961 (rank : 301)	NC score	0.021846 (rank : 435)
Query Neighborhood Hits	331	Target Neighborhood Hits	558	Shared Neighborhood Hits	46
SwissProt Accessions	Q6ZSZ6, O60534, Q4LE29, Q53EU4	Gene names	TSHZ1, SDCCAG33, TSH1
Domain Architecture	No domain graphic available
Description	Teashirt homolog 1 (Serologically defined colon cancer antigen 3) (Antigen NY-CO-33).

TSH1_MOUSE
θ value	6.88961 (rank : 302)	NC score	0.023404 (rank : 428)
Query Neighborhood Hits	331	Target Neighborhood Hits	675	Shared Neighborhood Hits	52
SwissProt Accessions	Q5DTH5, Q6PE60, Q8VD19, Q9JLD5	Gene names	Tshz1, Kiaa4206, Sdccag33, Tsh1
Domain Architecture	No domain graphic available
Description	Teashirt homolog 1 (Serologically defined colon cancer antigen 3 homolog).

VAX2_HUMAN
θ value	6.88961 (rank : 303)	NC score	0.210591 (rank : 162)
Query Neighborhood Hits	331	Target Neighborhood Hits	337	Shared Neighborhood Hits	208
SwissProt Accessions	Q9UIW0	Gene names	VAX2
Domain Architecture
Description	Ventral anterior homeobox 2.

VAX2_MOUSE
θ value	6.88961 (rank : 304)	NC score	0.210364 (rank : 164)
Query Neighborhood Hits	331	Target Neighborhood Hits	338	Shared Neighborhood Hits	206
SwissProt Accessions	Q9WTP9	Gene names	Vax2, Vex
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 2 (Ventral retina homeodomain protein).

ZN441_HUMAN
θ value	6.88961 (rank : 305)	NC score	0.021805 (rank : 436)
Query Neighborhood Hits	331	Target Neighborhood Hits	754	Shared Neighborhood Hits	54
SwissProt Accessions	Q8N8Z8	Gene names	ZNF441
Domain Architecture	No domain graphic available
Description	Zinc finger protein 441.

BCL6_HUMAN
θ value	8.99809 (rank : 306)	NC score	0.020902 (rank : 438)
Query Neighborhood Hits	331	Target Neighborhood Hits	922	Shared Neighborhood Hits	54
SwissProt Accessions	P41182	Gene names	BCL6, BCL5, LAZ3, ZBTB27, ZNF51
Domain Architecture
Description	B-cell lymphoma 6 protein (BCL-6) (Zinc finger protein 51) (LAZ-3 protein) (BCL-5) (Zinc finger and BTB domain-containing protein 27).

BCL6_MOUSE
θ value	8.99809 (rank : 307)	NC score	0.021184 (rank : 437)
Query Neighborhood Hits	331	Target Neighborhood Hits	913	Shared Neighborhood Hits	60
SwissProt Accessions	P41183, Q61065	Gene names	Bcl6, Bcl-6
Domain Architecture
Description	B-cell lymphoma 6 protein homolog.

CCNB1_HUMAN
θ value	8.99809 (rank : 308)	NC score	0.005157 (rank : 475)
Query Neighborhood Hits	331	Target Neighborhood Hits	61	Shared Neighborhood Hits	6
SwissProt Accessions	P14635	Gene names	CCNB1, CCNB
Domain Architecture
Description	G2/mitotic-specific cyclin-B1.

GOGA3_HUMAN
θ value	8.99809 (rank : 309)	NC score	0.004792 (rank : 478)
Query Neighborhood Hits	331	Target Neighborhood Hits	1317	Shared Neighborhood Hits	25
SwissProt Accessions	Q08378, O43241, Q6P9C7, Q86XW3, Q8TDA9, Q8WZA3	Gene names	GOLGA3
Domain Architecture
Description	Golgin subfamily A member 3 (Golgin-160) (Golgi complex-associated protein of 170 kDa) (GCP170).

GPVI_MOUSE
θ value	8.99809 (rank : 310)	NC score	0.002595 (rank : 481)
Query Neighborhood Hits	331	Target Neighborhood Hits	90	Shared Neighborhood Hits	2
SwissProt Accessions	P0C191	Gene names	Gp6
Domain Architecture	No domain graphic available
Description	Platelet glycoprotein VI precursor (GPVI).

HNF1A_MOUSE
θ value	8.99809 (rank : 311)	NC score	0.028452 (rank : 417)
Query Neighborhood Hits	331	Target Neighborhood Hits	212	Shared Neighborhood Hits	36
SwissProt Accessions	P22361	Gene names	Tcf1, Hnf-1, Hnf-1a, Hnf1a
Domain Architecture
Description	Hepatocyte nuclear factor 1-alpha (HNF-1A) (Liver-specific transcription factor LF-B1) (LFB1).

ITPR3_MOUSE
θ value	8.99809 (rank : 312)	NC score	0.003725 (rank : 480)
Query Neighborhood Hits	331	Target Neighborhood Hits	105	Shared Neighborhood Hits	3
SwissProt Accessions	P70227, Q5DWM4, Q8CED5, Q91Z08	Gene names	Itpr3
Domain Architecture	No domain graphic available
Description	Inositol 1,4,5-trisphosphate receptor type 3 (Type 3 inositol 1,4,5- trisphosphate receptor) (Type 3 InsP3 receptor) (IP3 receptor isoform 3) (InsP3R3).

MIZF_MOUSE
θ value	8.99809 (rank : 313)	NC score	0.036905 (rank : 400)
Query Neighborhood Hits	331	Target Neighborhood Hits	726	Shared Neighborhood Hits	56
SwissProt Accessions	Q8K1K9, Q8BWY0	Gene names	Mizf
Domain Architecture	No domain graphic available
Description	MBD2-interacting zinc finger protein (Methyl-CpG-binding protein 2- interacting zinc finger protein).

MLL3_HUMAN
θ value	8.99809 (rank : 314)	NC score	0.009151 (rank : 460)
Query Neighborhood Hits	331	Target Neighborhood Hits	1644	Shared Neighborhood Hits	52
SwissProt Accessions	Q8NEZ4, Q8NC02, Q8NDF6, Q9H9P4, Q9NR13, Q9P222, Q9UDR7	Gene names	MLL3, HALR, KIAA1506
Domain Architecture
Description	Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog (EC 2.1.1.43) (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (Homologous to ALR protein).

MSX3_MOUSE
θ value	8.99809 (rank : 315)	NC score	0.200519 (rank : 187)
Query Neighborhood Hits	331	Target Neighborhood Hits	330	Shared Neighborhood Hits	203
SwissProt Accessions	P70354, P70246, Q03360, Q80W10	Gene names	Msx3, Msx-3
Domain Architecture
Description	Homeobox protein MSX-3.

PDE4D_MOUSE
θ value	8.99809 (rank : 316)	NC score	0.005123 (rank : 476)
Query Neighborhood Hits	331	Target Neighborhood Hits	98	Shared Neighborhood Hits	3
SwissProt Accessions	Q01063, Q6TRH9, Q8C4Q7, Q8CG05	Gene names	Pde4d
Domain Architecture	No domain graphic available
Description	cAMP-specific 3',5'-cyclic phosphodiesterase 4D (EC 3.1.4.17) (DPDE3).

PHX2A_HUMAN
θ value	8.99809 (rank : 317)	NC score	0.228688 (rank : 112)
Query Neighborhood Hits	331	Target Neighborhood Hits	345	Shared Neighborhood Hits	204
SwissProt Accessions	O14813, Q8IVZ2	Gene names	PHOX2A, ARIX, PMX2A
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (Aristaless homeobox protein homolog) (ARIX1 homeodomain protein).

PHX2A_MOUSE
θ value	8.99809 (rank : 318)	NC score	0.229392 (rank : 110)
Query Neighborhood Hits	331	Target Neighborhood Hits	338	Shared Neighborhood Hits	204
SwissProt Accessions	Q62066	Gene names	Phox2a, Arix, Phox2, Pmx2, Pmx2a
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (PHOX2A homeodomain protein) (Aristaless homeobox protein homolog).

PO5F1_HUMAN
θ value	8.99809 (rank : 319)	NC score	0.136548 (rank : 329)
Query Neighborhood Hits	331	Target Neighborhood Hits	321	Shared Neighborhood Hits	182
SwissProt Accessions	Q01860, P31359, Q15167, Q15168, Q16422	Gene names	POU5F1, OCT3, OCT4, OTF3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4).

PRD10_HUMAN
θ value	8.99809 (rank : 320)	NC score	0.028927 (rank : 414)
Query Neighborhood Hits	331	Target Neighborhood Hits	769	Shared Neighborhood Hits	57
SwissProt Accessions	Q9NQV6, Q9ULI9	Gene names	PRDM10, KIAA1231, PFM7
Domain Architecture	No domain graphic available
Description	PR domain zinc finger protein 10 (PR domain-containing protein 10).

SARDH_MOUSE
θ value	8.99809 (rank : 321)	NC score	0.006524 (rank : 467)
Query Neighborhood Hits	331	Target Neighborhood Hits	26	Shared Neighborhood Hits	2
SwissProt Accessions	Q99LB7	Gene names	Sardh
Domain Architecture	No domain graphic available
Description	Sarcosine dehydrogenase, mitochondrial precursor (EC 1.5.99.1) (SarDH).

SC10A_HUMAN
θ value	8.99809 (rank : 322)	NC score	0.001231 (rank : 483)
Query Neighborhood Hits	331	Target Neighborhood Hits	116	Shared Neighborhood Hits	3
SwissProt Accessions	Q9Y5Y9	Gene names	SCN10A, PN3
Domain Architecture	No domain graphic available
Description	Sodium channel protein type 10 subunit alpha (Sodium channel protein type X subunit alpha) (Voltage-gated sodium channel subunit alpha Nav1.8) (Peripheral nerve sodium channel 3) (hPN3).

SDPR_HUMAN
θ value	8.99809 (rank : 323)	NC score	0.008087 (rank : 463)
Query Neighborhood Hits	331	Target Neighborhood Hits	337	Shared Neighborhood Hits	12
SwissProt Accessions	O95810	Gene names	SDPR
Domain Architecture	No domain graphic available
Description	Serum deprivation-response protein (Phosphatidylserine-binding protein) (PS-p68).

SMCA4_HUMAN
θ value	8.99809 (rank : 324)	NC score	0.005823 (rank : 473)
Query Neighborhood Hits	331	Target Neighborhood Hits	597	Shared Neighborhood Hits	25
SwissProt Accessions	P51532, O95052, Q9HBD3	Gene names	SMARCA4, BRG1, SNF2B, SNF2L4
Domain Architecture
Description	Probable global transcription activator SNF2L4 (EC 3.6.1.-) (ATP- dependent helicase SMARCA4) (SNF2-beta) (BRG-1 protein) (Mitotic growth and transcription activator) (Brahma protein homolog 1) (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4).

TCF8_HUMAN
θ value	8.99809 (rank : 325)	NC score	0.030741 (rank : 412)
Query Neighborhood Hits	331	Target Neighborhood Hits	1057	Shared Neighborhood Hits	95
SwissProt Accessions	P37275, Q12924, Q13800	Gene names	TCF8, AREB6
Domain Architecture
Description	Transcription factor 8 (NIL-2-A zinc finger protein) (Negative regulator of IL2).

UBP36_HUMAN
θ value	8.99809 (rank : 326)	NC score	0.005498 (rank : 474)
Query Neighborhood Hits	331	Target Neighborhood Hits	232	Shared Neighborhood Hits	11
SwissProt Accessions	Q9P275, Q8NDM8, Q9NVC8	Gene names	USP36, KIAA1453
Domain Architecture
Description	Ubiquitin carboxyl-terminal hydrolase 36 (EC 3.1.2.15) (Ubiquitin thioesterase 36) (Ubiquitin-specific-processing protease 36) (Deubiquitinating enzyme 36).

VSX1_HUMAN
θ value	8.99809 (rank : 327)	NC score	0.224958 (rank : 122)
Query Neighborhood Hits	331	Target Neighborhood Hits	344	Shared Neighborhood Hits	203
SwissProt Accessions	Q9NZR4, Q5TF40, Q5TF41, Q9HCU3, Q9NU27	Gene names	VSX1, RINX
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

VSX1_MOUSE
θ value	8.99809 (rank : 328)	NC score	0.228316 (rank : 113)
Query Neighborhood Hits	331	Target Neighborhood Hits	356	Shared Neighborhood Hits	198
SwissProt Accessions	Q91V10	Gene names	Vsx1, Rinx
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

ZBTB1_HUMAN
θ value	8.99809 (rank : 329)	NC score	0.018990 (rank : 444)
Query Neighborhood Hits	331	Target Neighborhood Hits	805	Shared Neighborhood Hits	51
SwissProt Accessions	Q9Y2K1, Q86SW8	Gene names	ZBTB1, KIAA0997
Domain Architecture
Description	Zinc finger and BTB domain-containing protein 1.

ZBTB1_MOUSE
θ value	8.99809 (rank : 330)	NC score	0.018879 (rank : 445)
Query Neighborhood Hits	331	Target Neighborhood Hits	795	Shared Neighborhood Hits	51
SwissProt Accessions	Q91VL9, Q8CDP7, Q99LD2	Gene names	Zbtb1
Domain Architecture
Description	Zinc finger and BTB domain-containing protein 1.

ZN710_HUMAN
θ value	8.99809 (rank : 331)	NC score	0.022883 (rank : 430)
Query Neighborhood Hits	331	Target Neighborhood Hits	796	Shared Neighborhood Hits	54
SwissProt Accessions	Q8N1W2, Q6ZMK9, Q8NDU0	Gene names	ZNF710
Domain Architecture	No domain graphic available
Description	Zinc finger protein 710.

ADNP_HUMAN
θ value	θ > 10 (rank : 332)	NC score	0.064791 (rank : 375)
Query Neighborhood Hits	331	Target Neighborhood Hits	265	Shared Neighborhood Hits	67
SwissProt Accessions	Q9H2P0, O94881, Q9UG34	Gene names	ADNP, KIAA0784
Domain Architecture
Description	Activity-dependent neuroprotector (Activity-dependent neuroprotective protein).

ALX3_HUMAN
θ value	θ > 10 (rank : 333)	NC score	0.228272 (rank : 114)
Query Neighborhood Hits	331	Target Neighborhood Hits	380	Shared Neighborhood Hits	221
SwissProt Accessions	O95076, O95075	Gene names	ALX3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

ALX3_MOUSE
θ value	θ > 10 (rank : 334)	NC score	0.229492 (rank : 109)
Query Neighborhood Hits	331	Target Neighborhood Hits	386	Shared Neighborhood Hits	219
SwissProt Accessions	O70137	Gene names	Alx3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

ALX4_HUMAN
θ value	θ > 10 (rank : 335)	NC score	0.227046 (rank : 120)
Query Neighborhood Hits	331	Target Neighborhood Hits	394	Shared Neighborhood Hits	222
SwissProt Accessions	Q9H161, Q96JN7, Q9H198, Q9HAY9	Gene names	ALX4, KIAA1788
Domain Architecture
Description	Homeobox protein aristaless-like 4.

ALX4_MOUSE
θ value	θ > 10 (rank : 336)	NC score	0.223741 (rank : 127)
Query Neighborhood Hits	331	Target Neighborhood Hits	369	Shared Neighborhood Hits	225
SwissProt Accessions	O35137	Gene names	Alx4
Domain Architecture
Description	Homeobox protein aristaless-like 4 (ALX-4).

ARX_HUMAN
θ value	θ > 10 (rank : 337)	NC score	0.218212 (rank : 131)
Query Neighborhood Hits	331	Target Neighborhood Hits	401	Shared Neighborhood Hits	209
SwissProt Accessions	Q96QS3	Gene names	ARX
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

ARX_MOUSE
θ value	θ > 10 (rank : 338)	NC score	0.217610 (rank : 132)
Query Neighborhood Hits	331	Target Neighborhood Hits	398	Shared Neighborhood Hits	208
SwissProt Accessions	O35085, Q9QYT4	Gene names	Arx
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

BARH1_HUMAN
θ value	θ > 10 (rank : 339)	NC score	0.199551 (rank : 189)
Query Neighborhood Hits	331	Target Neighborhood Hits	373	Shared Neighborhood Hits	214
SwissProt Accessions	Q9BZE3, Q9NY88	Gene names	BARHL1
Domain Architecture
Description	BarH-like 1 homeobox protein.

BARH1_MOUSE
θ value	θ > 10 (rank : 340)	NC score	0.192510 (rank : 206)
Query Neighborhood Hits	331	Target Neighborhood Hits	350	Shared Neighborhood Hits	212
SwissProt Accessions	P63157, Q9JK26	Gene names	Barhl1, Bhx1, Mbh2
Domain Architecture	No domain graphic available
Description	BarH-like 1 homeobox protein (Bar-class homeodomain protein MBH2) (BarH-related homeobox protein 1).

BARH2_HUMAN
θ value	θ > 10 (rank : 341)	NC score	0.198925 (rank : 192)
Query Neighborhood Hits	331	Target Neighborhood Hits	419	Shared Neighborhood Hits	215
SwissProt Accessions	Q9NY43, Q7Z4N7	Gene names	BARHL2
Domain Architecture
Description	BarH-like 2 homeobox protein.

BARH2_MOUSE
θ value	θ > 10 (rank : 342)	NC score	0.197603 (rank : 194)
Query Neighborhood Hits	331	Target Neighborhood Hits	397	Shared Neighborhood Hits	213
SwissProt Accessions	Q8VIB5, Q66L43	Gene names	Barhl2, Barh1, Mbh1
Domain Architecture	No domain graphic available
Description	BarH-like 2 homeobox protein (Bar-class homeodomain protein MBH1) (Homeobox protein B-H1).

BARX1_HUMAN
θ value	θ > 10 (rank : 343)	NC score	0.185016 (rank : 217)
Query Neighborhood Hits	331	Target Neighborhood Hits	326	Shared Neighborhood Hits	197
SwissProt Accessions	Q9HBU1	Gene names	BARX1
Domain Architecture
Description	Homeobox protein BarH-like 1.

BARX1_MOUSE
θ value	θ > 10 (rank : 344)	NC score	0.183912 (rank : 221)
Query Neighborhood Hits	331	Target Neighborhood Hits	324	Shared Neighborhood Hits	197
SwissProt Accessions	Q9ER42, O09066, P70159, Q9ERV2	Gene names	Barx1
Domain Architecture
Description	Homeobox protein BarH-like 1.

BARX2_MOUSE
θ value	θ > 10 (rank : 345)	NC score	0.193835 (rank : 204)
Query Neighborhood Hits	331	Target Neighborhood Hits	335	Shared Neighborhood Hits	204
SwissProt Accessions	O08686	Gene names	Barx2
Domain Architecture
Description	Homeobox protein BarH-like 2.

BSH_MOUSE
θ value	θ > 10 (rank : 346)	NC score	0.205721 (rank : 174)
Query Neighborhood Hits	331	Target Neighborhood Hits	349	Shared Neighborhood Hits	212
SwissProt Accessions	Q810B3	Gene names	Bsx
Domain Architecture	No domain graphic available
Description	Brain-specific homeobox protein homolog.

CART1_HUMAN
θ value	θ > 10 (rank : 347)	NC score	0.214284 (rank : 143)
Query Neighborhood Hits	331	Target Neighborhood Hits	348	Shared Neighborhood Hits	213
SwissProt Accessions	Q15699, Q546C8, Q96FH4	Gene names	CART1
Domain Architecture
Description	Cartilage homeoprotein 1 (CART-1).

CART1_MOUSE
θ value	θ > 10 (rank : 348)	NC score	0.213646 (rank : 146)
Query Neighborhood Hits	331	Target Neighborhood Hits	344	Shared Neighborhood Hits	211
SwissProt Accessions	Q8C8B0, Q8C370	Gene names	Cart1
Domain Architecture	No domain graphic available
Description	Cartilage homeoprotein 1 (CART-1).

CDX1_HUMAN
θ value	θ > 10 (rank : 349)	NC score	0.176669 (rank : 237)
Query Neighborhood Hits	331	Target Neighborhood Hits	382	Shared Neighborhood Hits	198
SwissProt Accessions	P47902, Q4VAU4, Q9NYK8	Gene names	CDX1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

CDX1_MOUSE
θ value	θ > 10 (rank : 350)	NC score	0.173488 (rank : 244)
Query Neighborhood Hits	331	Target Neighborhood Hits	379	Shared Neighborhood Hits	195
SwissProt Accessions	P18111, Q8VCF7	Gene names	Cdx1, Cdx-1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

CDX2_HUMAN
θ value	θ > 10 (rank : 351)	NC score	0.165778 (rank : 264)
Query Neighborhood Hits	331	Target Neighborhood Hits	330	Shared Neighborhood Hits	194
SwissProt Accessions	Q99626, O00503, Q969L8	Gene names	CDX2, CDX3
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2) (CDX-3).

CDX2_MOUSE
θ value	θ > 10 (rank : 352)	NC score	0.169881 (rank : 250)
Query Neighborhood Hits	331	Target Neighborhood Hits	336	Shared Neighborhood Hits	195
SwissProt Accessions	P43241	Gene names	Cdx2, Cdx-2
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2).

CDX4_MOUSE
θ value	θ > 10 (rank : 353)	NC score	0.179170 (rank : 232)
Query Neighborhood Hits	331	Target Neighborhood Hits	378	Shared Neighborhood Hits	205
SwissProt Accessions	Q07424	Gene names	Cdx4, Cdx-4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

CUTL2_MOUSE
θ value	θ > 10 (rank : 354)	NC score	0.089135 (rank : 359)
Query Neighborhood Hits	331	Target Neighborhood Hits	771	Shared Neighborhood Hits	166
SwissProt Accessions	P70298	Gene names	Cutl2
Domain Architecture
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

DLX1_HUMAN
θ value	θ > 10 (rank : 355)	NC score	0.221682 (rank : 129)
Query Neighborhood Hits	331	Target Neighborhood Hits	343	Shared Neighborhood Hits	219
SwissProt Accessions	P56177, Q53ZU4, Q8IYB2	Gene names	DLX1
Domain Architecture
Description	Homeobox protein DLX-1.

DLX1_MOUSE
θ value	θ > 10 (rank : 356)	NC score	0.221703 (rank : 128)
Query Neighborhood Hits	331	Target Neighborhood Hits	343	Shared Neighborhood Hits	219
SwissProt Accessions	Q64317	Gene names	Dlx1
Domain Architecture
Description	Homeobox protein DLX-1.

DLX4_MOUSE
θ value	θ > 10 (rank : 357)	NC score	0.217584 (rank : 133)
Query Neighborhood Hits	331	Target Neighborhood Hits	352	Shared Neighborhood Hits	209
SwissProt Accessions	P70436, Q3UM51, Q8R4I3	Gene names	Dlx4, Dlx7
Domain Architecture
Description	Homeobox protein DLX-4 (DLX-7).

DLX6_HUMAN
θ value	θ > 10 (rank : 358)	NC score	0.219885 (rank : 130)
Query Neighborhood Hits	331	Target Neighborhood Hits	341	Shared Neighborhood Hits	220
SwissProt Accessions	P56179, Q3ZAR6, Q9UPL2	Gene names	DLX6
Domain Architecture
Description	Homeobox protein DLX-6.

DUX2_HUMAN
θ value	θ > 10 (rank : 359)	NC score	0.188261 (rank : 210)
Query Neighborhood Hits	331	Target Neighborhood Hits	173	Shared Neighborhood Hits	112
SwissProt Accessions	O75505	Gene names	DUX2
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 2.

ESX1L_HUMAN
θ value	θ > 10 (rank : 360)	NC score	0.233035 (rank : 97)
Query Neighborhood Hits	331	Target Neighborhood Hits	498	Shared Neighborhood Hits	211
SwissProt Accessions	Q8N693, Q7Z6K7	Gene names	ESX1L, ESX1R
Domain Architecture
Description	Extraembryonic, spermatogenesis, homeobox 1-like protein.

GBX1_HUMAN
θ value	θ > 10 (rank : 361)	NC score	0.179592 (rank : 231)
Query Neighborhood Hits	331	Target Neighborhood Hits	334	Shared Neighborhood Hits	186
SwissProt Accessions	Q14549	Gene names	GBX1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

GBX1_MOUSE
θ value	θ > 10 (rank : 362)	NC score	0.178332 (rank : 234)
Query Neighborhood Hits	331	Target Neighborhood Hits	350	Shared Neighborhood Hits	186
SwissProt Accessions	P82976, Q8CGW5	Gene names	Gbx1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

GBX2_HUMAN
θ value	θ > 10 (rank : 363)	NC score	0.182994 (rank : 224)
Query Neighborhood Hits	331	Target Neighborhood Hits	322	Shared Neighborhood Hits	189
SwissProt Accessions	P52951, O43833, Q53RX5, Q9Y5Y1	Gene names	GBX2
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2).

GBX2_MOUSE
θ value	θ > 10 (rank : 364)	NC score	0.182834 (rank : 225)
Query Neighborhood Hits	331	Target Neighborhood Hits	326	Shared Neighborhood Hits	190
SwissProt Accessions	P48031	Gene names	Gbx2, Mmoxa, Stra7
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2) (Homeobox protein STRA7).

GSH2_MOUSE
θ value	θ > 10 (rank : 365)	NC score	0.175403 (rank : 239)
Query Neighborhood Hits	331	Target Neighborhood Hits	319	Shared Neighborhood Hits	200
SwissProt Accessions	P31316	Gene names	Gsh2, Gsh-2
Domain Architecture
Description	Homeobox protein GSH-2.

GSHI_HUMAN
θ value	θ > 10 (rank : 366)	NC score	0.171337 (rank : 248)
Query Neighborhood Hits	331	Target Neighborhood Hits	314	Shared Neighborhood Hits	200
SwissProt Accessions	Q9H4S2	Gene names	GSH1
Domain Architecture
Description	Homeobox protein GSH-1.

GSHI_MOUSE
θ value	θ > 10 (rank : 367)	NC score	0.172793 (rank : 247)
Query Neighborhood Hits	331	Target Neighborhood Hits	313	Shared Neighborhood Hits	199
SwissProt Accessions	P31315	Gene names	Gsh1, Gsh-1
Domain Architecture
Description	Homeobox protein GSH-1.

HESX1_HUMAN
θ value	θ > 10 (rank : 368)	NC score	0.216788 (rank : 137)
Query Neighborhood Hits	331	Target Neighborhood Hits	326	Shared Neighborhood Hits	200
SwissProt Accessions	Q9UBX0, Q99667	Gene names	HESX1, HANF
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (hAnf).

HESX1_MOUSE
θ value	θ > 10 (rank : 369)	NC score	0.214240 (rank : 144)
Query Neighborhood Hits	331	Target Neighborhood Hits	331	Shared Neighborhood Hits	200
SwissProt Accessions	Q61658, Q61047	Gene names	Hesx1, Hes-1, Rpx
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (Anterior- restricted homeobox protein) (Rathke pouch homeo box).

HLX1_HUMAN
θ value	θ > 10 (rank : 370)	NC score	0.189696 (rank : 208)
Query Neighborhood Hits	331	Target Neighborhood Hits	370	Shared Neighborhood Hits	205
SwissProt Accessions	Q14774, Q15988	Gene names	HLX1
Domain Architecture
Description	Homeobox protein HLX1 (Homeobox protein HB24).

HLX1_MOUSE
θ value	θ > 10 (rank : 371)	NC score	0.190472 (rank : 207)
Query Neighborhood Hits	331	Target Neighborhood Hits	362	Shared Neighborhood Hits	203
SwissProt Accessions	Q61670	Gene names	Hlx1, Hlx
Domain Architecture
Description	Homeobox protein HLX1.

HLXB9_HUMAN
θ value	θ > 10 (rank : 372)	NC score	0.183725 (rank : 223)
Query Neighborhood Hits	331	Target Neighborhood Hits	336	Shared Neighborhood Hits	210
SwissProt Accessions	P50219, Q9Y648	Gene names	HLXB9
Domain Architecture
Description	Homeobox protein HB9.

HLXB9_MOUSE
θ value	θ > 10 (rank : 373)	NC score	0.183822 (rank : 222)
Query Neighborhood Hits	331	Target Neighborhood Hits	354	Shared Neighborhood Hits	213
SwissProt Accessions	Q9QZW9	Gene names	Hlxb9
Domain Architecture
Description	Homeobox protein HB9.

HMBX1_HUMAN
θ value	θ > 10 (rank : 374)	NC score	0.078708 (rank : 367)
Query Neighborhood Hits	331	Target Neighborhood Hits	118	Shared Neighborhood Hits	77
SwissProt Accessions	Q6NT76, Q3Y6P1, Q96GS5, Q9H701	Gene names	HMBOX1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

HMBX1_MOUSE
θ value	θ > 10 (rank : 375)	NC score	0.067562 (rank : 374)
Query Neighborhood Hits	331	Target Neighborhood Hits	117	Shared Neighborhood Hits	75
SwissProt Accessions	Q8BJA3, Q80WC2, Q8BWE7, Q99LV1	Gene names	Hmbox1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

HMX2_MOUSE
θ value	θ > 10 (rank : 376)	NC score	0.210960 (rank : 160)
Query Neighborhood Hits	331	Target Neighborhood Hits	354	Shared Neighborhood Hits	213
SwissProt Accessions	P43687, Q8R1Q2	Gene names	Hmx2, Nkx-5.2, Nkx5-2
Domain Architecture
Description	Homeobox protein HMX2 (Homeobox protein Nkx-5.2).

HMX3_MOUSE
θ value	θ > 10 (rank : 377)	NC score	0.203242 (rank : 176)
Query Neighborhood Hits	331	Target Neighborhood Hits	342	Shared Neighborhood Hits	210
SwissProt Accessions	P42581	Gene names	Hmx3, Nkx-5.1, Nkx5-1
Domain Architecture
Description	Homeobox protein HMX3 (Homeobox protein Nkx-5.1).

HNF6_HUMAN
θ value	θ > 10 (rank : 378)	NC score	0.053660 (rank : 386)
Query Neighborhood Hits	331	Target Neighborhood Hits	127	Shared Neighborhood Hits	70
SwissProt Accessions	Q9UBC0, Q99744, Q9UMR6	Gene names	ONECUT1, HNF6, HNF6A
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

HNF6_MOUSE
θ value	θ > 10 (rank : 379)	NC score	0.053769 (rank : 385)
Query Neighborhood Hits	331	Target Neighborhood Hits	124	Shared Neighborhood Hits	71
SwissProt Accessions	O08755	Gene names	Onecut1, Hnf6, Hnf6a
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

HOP_HUMAN
θ value	θ > 10 (rank : 380)	NC score	0.120890 (rank : 336)
Query Neighborhood Hits	331	Target Neighborhood Hits	107	Shared Neighborhood Hits	68
SwissProt Accessions	Q9BPY8, Q8N0V6, Q96CI1	Gene names	HOP, HOD, LAGY, NECC1, OB1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Lung cancer-associated Y protein) (Odd homeobox protein 1) (Not expressed in choriocarcinoma protein 1).

HOP_MOUSE
θ value	θ > 10 (rank : 381)	NC score	0.115644 (rank : 338)
Query Neighborhood Hits	331	Target Neighborhood Hits	102	Shared Neighborhood Hits	64
SwissProt Accessions	Q8R1H0, Q8C1N5, Q8CJ22	Gene names	Hop, Hod, Ob1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Homeobox-only protein) (Odd homeobox protein 1) (mOB1).

HXA10_HUMAN
θ value	θ > 10 (rank : 382)	NC score	0.139269 (rank : 327)
Query Neighborhood Hits	331	Target Neighborhood Hits	334	Shared Neighborhood Hits	194
SwissProt Accessions	P31260, O43370, O43605, Q15949	Gene names	HOXA10, HOX1H
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL).

HXA10_MOUSE
θ value	θ > 10 (rank : 383)	NC score	0.138204 (rank : 328)
Query Neighborhood Hits	331	Target Neighborhood Hits	365	Shared Neighborhood Hits	194
SwissProt Accessions	P31310, Q80Y22	Gene names	Hoxa10, Hox-1.8, Hoxa-10
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1.8).

HXA11_HUMAN
θ value	θ > 10 (rank : 384)	NC score	0.160619 (rank : 273)
Query Neighborhood Hits	331	Target Neighborhood Hits	334	Shared Neighborhood Hits	195
SwissProt Accessions	P31270	Gene names	HOXA11, HOX1I
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1I).

HXA11_MOUSE
θ value	θ > 10 (rank : 385)	NC score	0.159537 (rank : 275)
Query Neighborhood Hits	331	Target Neighborhood Hits	327	Shared Neighborhood Hits	195
SwissProt Accessions	P31311, Q3V026	Gene names	Hoxa11, Hox-1.9, Hoxa-11
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1.9).

HXA2_HUMAN
θ value	θ > 10 (rank : 386)	NC score	0.161410 (rank : 270)
Query Neighborhood Hits	331	Target Neighborhood Hits	370	Shared Neighborhood Hits	198
SwissProt Accessions	O43364	Gene names	HOXA2
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A2.

HXA2_MOUSE
θ value	θ > 10 (rank : 387)	NC score	0.162115 (rank : 269)
Query Neighborhood Hits	331	Target Neighborhood Hits	338	Shared Neighborhood Hits	198
SwissProt Accessions	P31245, Q149U3, Q920T8	Gene names	Hoxa2, Hox-1.11, Hoxa-2
Domain Architecture
Description	Homeobox protein Hox-A2 (Hox-1.11) (Hox1.11).

HXA3_MOUSE
θ value	θ > 10 (rank : 388)	NC score	0.174406 (rank : 242)
Query Neighborhood Hits	331	Target Neighborhood Hits	558	Shared Neighborhood Hits	221
SwissProt Accessions	P02831, Q4V9Z8, Q61197	Gene names	Hoxa3, Hox-1.5, Hoxa-3
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1.5) (MO-10).

HXA4_HUMAN
θ value	θ > 10 (rank : 389)	NC score	0.157534 (rank : 281)
Query Neighborhood Hits	331	Target Neighborhood Hits	370	Shared Neighborhood Hits	202
SwissProt Accessions	Q00056, O43366	Gene names	HOXA4, HOX1D
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4).

HXA4_MOUSE
θ value	θ > 10 (rank : 390)	NC score	0.157140 (rank : 282)
Query Neighborhood Hits	331	Target Neighborhood Hits	379	Shared Neighborhood Hits	203
SwissProt Accessions	P06798, Q61684, Q64388, Q8BPE6	Gene names	Hoxa4, Hox-1.4, Hoxa-4
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1.4) (Homeobox protein MH-3).

HXA5_HUMAN
θ value	θ > 10 (rank : 391)	NC score	0.144811 (rank : 313)
Query Neighborhood Hits	331	Target Neighborhood Hits	336	Shared Neighborhood Hits	197
SwissProt Accessions	P20719, O43367, Q96CY6	Gene names	HOXA5, HOX1C
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1C).

HXA5_MOUSE
θ value	θ > 10 (rank : 392)	NC score	0.144762 (rank : 314)
Query Neighborhood Hits	331	Target Neighborhood Hits	338	Shared Neighborhood Hits	197
SwissProt Accessions	P09021, Q91VQ5	Gene names	Hoxa5, Hox-1.3, Hoxa-5
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1.3) (M2).

HXA6_HUMAN
θ value	θ > 10 (rank : 393)	NC score	0.146102 (rank : 308)
Query Neighborhood Hits	331	Target Neighborhood Hits	309	Shared Neighborhood Hits	194
SwissProt Accessions	P31267, Q9UPM0	Gene names	HOXA6, HOX1B
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A6 (Hox-1B).

HXA6_MOUSE
θ value	θ > 10 (rank : 394)	NC score	0.145184 (rank : 312)
Query Neighborhood Hits	331	Target Neighborhood Hits	304	Shared Neighborhood Hits	190
SwissProt Accessions	P09092, Q9JI98	Gene names	Hoxa6, Hox-1.2, Hoxa-6
Domain Architecture
Description	Homeobox protein Hox-A6 (Hox-1.2) (M5-4).

HXA7_HUMAN
θ value	θ > 10 (rank : 395)	NC score	0.147803 (rank : 298)
Query Neighborhood Hits	331	Target Neighborhood Hits	309	Shared Neighborhood Hits	196
SwissProt Accessions	P31268, O43368, O43486, O95655, Q9NSC8, Q9UDM1	Gene names	HOXA7, HOX1A
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1).

HXA7_MOUSE
θ value	θ > 10 (rank : 396)	NC score	0.152328 (rank : 289)
Query Neighborhood Hits	331	Target Neighborhood Hits	318	Shared Neighborhood Hits	198
SwissProt Accessions	P02830, Q544P0	Gene names	Hoxa7, Hox-1.1, Hoxa-7
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1.1) (M6-12) (M6).

HXA9_HUMAN
θ value	θ > 10 (rank : 397)	NC score	0.147328 (rank : 304)
Query Neighborhood Hits	331	Target Neighborhood Hits	332	Shared Neighborhood Hits	208
SwissProt Accessions	P31269, O43369, O43429, Q99820	Gene names	HOXA9, HOX1G
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1G).

HXA9_MOUSE
θ value	θ > 10 (rank : 398)	NC score	0.147621 (rank : 301)
Query Neighborhood Hits	331	Target Neighborhood Hits	334	Shared Neighborhood Hits	208
SwissProt Accessions	P09631, O70154, O70155	Gene names	Hoxa9, Hox-1.7, Hoxa-9
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1.7).

HXB2_HUMAN
θ value	θ > 10 (rank : 399)	NC score	0.178374 (rank : 233)
Query Neighborhood Hits	331	Target Neighborhood Hits	367	Shared Neighborhood Hits	204
SwissProt Accessions	P14652, P10913, P17485	Gene names	HOXB2, HOX2H
Domain Architecture
Description	Homeobox protein Hox-B2 (Hox-2H) (Hox-2.8) (K8).

HXB2_MOUSE
θ value	θ > 10 (rank : 400)	NC score	0.165383 (rank : 265)
Query Neighborhood Hits	331	Target Neighborhood Hits	350	Shared Neighborhood Hits	196
SwissProt Accessions	P0C1T1	Gene names	Hoxb2, Hox-2.8
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-B2 (Hox-2.8).

HXB3_HUMAN
θ value	θ > 10 (rank : 401)	NC score	0.166214 (rank : 263)
Query Neighborhood Hits	331	Target Neighborhood Hits	559	Shared Neighborhood Hits	211
SwissProt Accessions	P14651, O95615, P17484	Gene names	HOXB3, HOX2G
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7).

HXB3_MOUSE
θ value	θ > 10 (rank : 402)	NC score	0.167596 (rank : 260)
Query Neighborhood Hits	331	Target Neighborhood Hits	493	Shared Neighborhood Hits	207
SwissProt Accessions	P09026, P10285, Q4PJ06, Q61680	Gene names	Hoxb3, Hox-2.7, Hoxb-3
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2.7) (Homeobox protein MH-23).

HXB4_HUMAN
θ value	θ > 10 (rank : 403)	NC score	0.158707 (rank : 276)
Query Neighborhood Hits	331	Target Neighborhood Hits	376	Shared Neighborhood Hits	208
SwissProt Accessions	P17483, Q9NTA0	Gene names	HOXB4, HOX2F
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2F) (Hox-2.6).

HXB4_MOUSE
θ value	θ > 10 (rank : 404)	NC score	0.157819 (rank : 280)
Query Neighborhood Hits	331	Target Neighborhood Hits	375	Shared Neighborhood Hits	205
SwissProt Accessions	P10284, Q3UZB4, Q4VBG0	Gene names	Hoxb4, Hox-2.6, Hoxb-4
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2.6).

HXB5_HUMAN
θ value	θ > 10 (rank : 405)	NC score	0.143100 (rank : 318)
Query Neighborhood Hits	331	Target Neighborhood Hits	332	Shared Neighborhood Hits	195
SwissProt Accessions	P09067, P09069	Gene names	HOXB5, HOX2A
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2A) (HHO.C10) (HU-1).

HXB5_MOUSE
θ value	θ > 10 (rank : 406)	NC score	0.142790 (rank : 319)
Query Neighborhood Hits	331	Target Neighborhood Hits	337	Shared Neighborhood Hits	196
SwissProt Accessions	P09079, Q3ZAY8	Gene names	Hoxb5, Hox-2.1, Hoxb-5
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2.1) (MU-1) (H24.1).

HXB6_HUMAN
θ value	θ > 10 (rank : 407)	NC score	0.146243 (rank : 306)
Query Neighborhood Hits	331	Target Neighborhood Hits	307	Shared Neighborhood Hits	190
SwissProt Accessions	P17509, P09068, Q9HB11, Q9UGH2	Gene names	HOXB6, HOX2B
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2).

HXB6_MOUSE
θ value	θ > 10 (rank : 408)	NC score	0.146225 (rank : 307)
Query Neighborhood Hits	331	Target Neighborhood Hits	309	Shared Neighborhood Hits	190
SwissProt Accessions	P09023	Gene names	Hoxb6, Hox-2.2, Hoxb-6
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2.2) (Homeobox protein MH-22A).

HXB7_HUMAN
θ value	θ > 10 (rank : 409)	NC score	0.151093 (rank : 291)
Query Neighborhood Hits	331	Target Neighborhood Hits	311	Shared Neighborhood Hits	198
SwissProt Accessions	P09629, Q15957	Gene names	HOXB7, HOX2C
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2C) (HHO.C1).

HXB7_MOUSE
θ value	θ > 10 (rank : 410)	NC score	0.152620 (rank : 288)
Query Neighborhood Hits	331	Target Neighborhood Hits	314	Shared Neighborhood Hits	198
SwissProt Accessions	P09024, Q3UW15	Gene names	Hoxb7, Hox-2.3, Hoxb-7
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2.3) (MUB1) (Homeobox protein MH-22B).

HXB8_HUMAN
θ value	θ > 10 (rank : 411)	NC score	0.156654 (rank : 284)
Query Neighborhood Hits	331	Target Neighborhood Hits	324	Shared Neighborhood Hits	204
SwissProt Accessions	P17481, Q9H1I2	Gene names	HOXB8, HOX2D
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4).

HXB8_MOUSE
θ value	θ > 10 (rank : 412)	NC score	0.156691 (rank : 283)
Query Neighborhood Hits	331	Target Neighborhood Hits	325	Shared Neighborhood Hits	205
SwissProt Accessions	P09632	Gene names	Hoxb8, Hox-2.4, Hoxb-8
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2.4).

HXB9_HUMAN
θ value	θ > 10 (rank : 413)	NC score	0.145238 (rank : 311)
Query Neighborhood Hits	331	Target Neighborhood Hits	344	Shared Neighborhood Hits	203
SwissProt Accessions	P17482, Q9H1I1	Gene names	HOXB9, HOX2E
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5).

HXB9_MOUSE
θ value	θ > 10 (rank : 414)	NC score	0.145477 (rank : 310)
Query Neighborhood Hits	331	Target Neighborhood Hits	344	Shared Neighborhood Hits	204
SwissProt Accessions	P20615	Gene names	Hoxb9, Hox-2.5, Hoxb-9
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2.5).

HXC10_HUMAN
θ value	θ > 10 (rank : 415)	NC score	0.143732 (rank : 316)
Query Neighborhood Hits	331	Target Neighborhood Hits	417	Shared Neighborhood Hits	207
SwissProt Accessions	Q9NYD6, O15219, O15220, Q9BVD5	Gene names	HOXC10
Domain Architecture
Description	Homeobox protein Hox-C10.

HXC10_MOUSE
θ value	θ > 10 (rank : 416)	NC score	0.144602 (rank : 315)
Query Neighborhood Hits	331	Target Neighborhood Hits	417	Shared Neighborhood Hits	206
SwissProt Accessions	P31257, P31312, Q7TMT7	Gene names	Hoxc10, Hox-3.6, Hoxc-10
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C10 (Hox-3.6).

HXC5_HUMAN
θ value	θ > 10 (rank : 417)	NC score	0.147747 (rank : 299)
Query Neighborhood Hits	331	Target Neighborhood Hits	316	Shared Neighborhood Hits	191
SwissProt Accessions	Q00444	Gene names	HOXC5, HOX3D
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3D) (CP11).

HXC5_MOUSE
θ value	θ > 10 (rank : 418)	NC score	0.147639 (rank : 300)
Query Neighborhood Hits	331	Target Neighborhood Hits	316	Shared Neighborhood Hits	191
SwissProt Accessions	P32043, Q8BJW4	Gene names	Hoxc5, Hox-3.4, Hoxc-5
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3.4) (Hox-6.2).

HXC6_HUMAN
θ value	θ > 10 (rank : 419)	NC score	0.142641 (rank : 320)
Query Neighborhood Hits	331	Target Neighborhood Hits	306	Shared Neighborhood Hits	193
SwissProt Accessions	P09630	Gene names	HOXC6, HOX3C
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3C) (HHO.C8) (CP25).

HXC6_MOUSE
θ value	θ > 10 (rank : 420)	NC score	0.142641 (rank : 321)
Query Neighborhood Hits	331	Target Neighborhood Hits	306	Shared Neighborhood Hits	193
SwissProt Accessions	P10629, Q61683	Gene names	Hoxc6, Hox-3.3, Hoxc-6
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3.3) (Hox-6.1).

HXC8_HUMAN
θ value	θ > 10 (rank : 421)	NC score	0.155756 (rank : 286)
Query Neighborhood Hits	331	Target Neighborhood Hits	327	Shared Neighborhood Hits	203
SwissProt Accessions	P31273, O15221, O15362	Gene names	HOXC8, HOX3A
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3A).

HXC8_MOUSE
θ value	θ > 10 (rank : 422)	NC score	0.155762 (rank : 285)
Query Neighborhood Hits	331	Target Neighborhood Hits	327	Shared Neighborhood Hits	203
SwissProt Accessions	P09025	Gene names	Hoxc8, Hox-3.1, Hoxc-8
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3.1) (M31).

HXC9_HUMAN
θ value	θ > 10 (rank : 423)	NC score	0.140797 (rank : 325)
Query Neighborhood Hits	331	Target Neighborhood Hits	339	Shared Neighborhood Hits	204
SwissProt Accessions	P31274, Q9H1I0	Gene names	HOXC9, HOX3B
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3B).

HXC9_MOUSE
θ value	θ > 10 (rank : 424)	NC score	0.140726 (rank : 326)
Query Neighborhood Hits	331	Target Neighborhood Hits	338	Shared Neighborhood Hits	204
SwissProt Accessions	P09633	Gene names	Hoxc9, Hox-3.2, Hoxc-9
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3.2).

HXD10_HUMAN
θ value	θ > 10 (rank : 425)	NC score	0.143217 (rank : 317)
Query Neighborhood Hits	331	Target Neighborhood Hits	392	Shared Neighborhood Hits	212
SwissProt Accessions	P28358	Gene names	HOXD10, HOX4D
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4D) (Hox-4E).

HXD10_MOUSE
θ value	θ > 10 (rank : 426)	NC score	0.142563 (rank : 322)
Query Neighborhood Hits	331	Target Neighborhood Hits	392	Shared Neighborhood Hits	210
SwissProt Accessions	P28359, Q91WU9	Gene names	Hoxd10, Hox-4.5, Hoxd-10
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4.5) (Hox-5.3).

HXD11_HUMAN
θ value	θ > 10 (rank : 427)	NC score	0.168570 (rank : 253)
Query Neighborhood Hits	331	Target Neighborhood Hits	353	Shared Neighborhood Hits	207
SwissProt Accessions	P31277, Q9NS02	Gene names	HOXD11, HOX4F
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4F).

HXD11_MOUSE
θ value	θ > 10 (rank : 428)	NC score	0.168454 (rank : 257)
Query Neighborhood Hits	331	Target Neighborhood Hits	376	Shared Neighborhood Hits	208
SwissProt Accessions	P23813	Gene names	Hoxd11, Hox-4.6, Hoxd-11
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5).

HXD4_HUMAN
θ value	θ > 10 (rank : 429)	NC score	0.158294 (rank : 279)
Query Neighborhood Hits	331	Target Neighborhood Hits	337	Shared Neighborhood Hits	195
SwissProt Accessions	P09016, Q96AU0	Gene names	HOXD4, HOX4B
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4B) (Hox-5.1) (HHO.C13).

HXD4_MOUSE
θ value	θ > 10 (rank : 430)	NC score	0.153603 (rank : 287)
Query Neighborhood Hits	331	Target Neighborhood Hits	339	Shared Neighborhood Hits	193
SwissProt Accessions	P10628, P97451, Q3UXL6	Gene names	Hoxd4, Hox-4.2, Hoxd-4
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4.2) (Hox-5.1).

HXD9_HUMAN
θ value	θ > 10 (rank : 431)	NC score	0.142423 (rank : 323)
Query Neighborhood Hits	331	Target Neighborhood Hits	352	Shared Neighborhood Hits	207
SwissProt Accessions	P28356	Gene names	HOXD9, HOX4C
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2).

HXD9_MOUSE
θ value	θ > 10 (rank : 432)	NC score	0.141325 (rank : 324)
Query Neighborhood Hits	331	Target Neighborhood Hits	359	Shared Neighborhood Hits	207
SwissProt Accessions	P28357, Q3UYS2	Gene names	Hoxd9, Hox-4.4, Hoxd-9
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4.4) (Hox-5.2).

IPF1_HUMAN
θ value	θ > 10 (rank : 433)	NC score	0.169471 (rank : 252)
Query Neighborhood Hits	331	Target Neighborhood Hits	330	Shared Neighborhood Hits	201
SwissProt Accessions	P52945, O60594	Gene names	IPF1, PDX1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Pancreas/duodenum homeobox 1) (PDX- 1) (Islet/duodenum homeobox-1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Insulin upstream factor 1) (IUF-1) (Glucose- sensitive factor) (GSF).

IPF1_MOUSE
θ value	θ > 10 (rank : 434)	NC score	0.170932 (rank : 249)
Query Neighborhood Hits	331	Target Neighborhood Hits	340	Shared Neighborhood Hits	204
SwissProt Accessions	P52946	Gene names	Ipf1, Pdx1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Islet/duodenum homeobox 1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Pancreas/duodenum homeobox 1).

LBX1_HUMAN
θ value	θ > 10 (rank : 435)	NC score	0.212832 (rank : 153)
Query Neighborhood Hits	331	Target Neighborhood Hits	357	Shared Neighborhood Hits	215
SwissProt Accessions	P52954	Gene names	LBX1
Domain Architecture
Description	Transcription factor LBX1.

LBX1_MOUSE
θ value	θ > 10 (rank : 436)	NC score	0.210347 (rank : 165)
Query Neighborhood Hits	331	Target Neighborhood Hits	349	Shared Neighborhood Hits	212
SwissProt Accessions	P52955	Gene names	Lbx1, Lbx1h
Domain Architecture
Description	Transcription factor LBX1.

LMO3_HUMAN
θ value	θ > 10 (rank : 437)	NC score	0.087412 (rank : 360)
Query Neighborhood Hits	331	Target Neighborhood Hits	111	Shared Neighborhood Hits	24
SwissProt Accessions	Q8TAP4, Q8N974, Q9UDD5	Gene names	LMO3, RBTN3, RHOM3
Domain Architecture
Description	LIM-only protein 3 (Neuronal-specific transcription factor DAT1) (Rhombotin-3).

LMO3_MOUSE
θ value	θ > 10 (rank : 438)	NC score	0.087412 (rank : 361)
Query Neighborhood Hits	331	Target Neighborhood Hits	111	Shared Neighborhood Hits	24
SwissProt Accessions	Q8BZL8	Gene names	Lmo3
Domain Architecture
Description	LIM-only protein 3 (Neuronal-specific transcription factor DAT1).

LMO4_HUMAN
θ value	θ > 10 (rank : 439)	NC score	0.089859 (rank : 356)
Query Neighborhood Hits	331	Target Neighborhood Hits	111	Shared Neighborhood Hits	24
SwissProt Accessions	P61968, O00158, O88894	Gene names	LMO4
Domain Architecture
Description	LIM domain transcription factor LMO4 (LIM domain only protein 4) (LMO- 4) (Breast tumor autoantigen).

LMO4_MOUSE
θ value	θ > 10 (rank : 440)	NC score	0.089859 (rank : 357)
Query Neighborhood Hits	331	Target Neighborhood Hits	111	Shared Neighborhood Hits	24
SwissProt Accessions	P61969, O00158, O88894	Gene names	Lmo4
Domain Architecture
Description	LIM domain transcription factor LMO4 (LIM domain only protein 4) (LMO- 4) (Breast tumor autoantigen).

MEIS1_HUMAN
θ value	θ > 10 (rank : 441)	NC score	0.096817 (rank : 348)
Query Neighborhood Hits	331	Target Neighborhood Hits	115	Shared Neighborhood Hits	83
SwissProt Accessions	O00470	Gene names	MEIS1
Domain Architecture
Description	Homeobox protein Meis1.

MEIS1_MOUSE
θ value	θ > 10 (rank : 442)	NC score	0.096818 (rank : 347)
Query Neighborhood Hits	331	Target Neighborhood Hits	115	Shared Neighborhood Hits	83
SwissProt Accessions	Q60954, Q5SVC8, Q60955, Q8CIL0	Gene names	Meis1
Domain Architecture
Description	Homeobox protein Meis1 (Myeloid ecotropic viral integration site 1).

MEIS3_HUMAN
θ value	θ > 10 (rank : 443)	NC score	0.096757 (rank : 349)
Query Neighborhood Hits	331	Target Neighborhood Hits	118	Shared Neighborhood Hits	84
SwissProt Accessions	Q99687, Q6NT73, Q8TC66, Q9NPW2	Gene names	MEIS3, MRG2
Domain Architecture	No domain graphic available
Description	Homeobox protein Meis3 (Meis1-related protein 2).

MEIS3_MOUSE
θ value	θ > 10 (rank : 444)	NC score	0.094690 (rank : 351)
Query Neighborhood Hits	331	Target Neighborhood Hits	118	Shared Neighborhood Hits	83
SwissProt Accessions	P97368, Q99L81	Gene names	Meis3, Mrg2
Domain Architecture
Description	Homeobox protein Meis3 (Meis1-related protein 2).

MEOX2_HUMAN
θ value	θ > 10 (rank : 445)	NC score	0.188030 (rank : 212)
Query Neighborhood Hits	331	Target Neighborhood Hits	340	Shared Neighborhood Hits	205
SwissProt Accessions	P50222, O75263, Q9UPL6	Gene names	MEOX2, GAX, MOX2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth arrest-specific homeobox).

MEOX2_MOUSE
θ value	θ > 10 (rank : 446)	NC score	0.188128 (rank : 211)
Query Neighborhood Hits	331	Target Neighborhood Hits	341	Shared Neighborhood Hits	206
SwissProt Accessions	P32443, Q544T6	Gene names	Meox2, Gax, Mox-2, Mox2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2).

NKX12_MOUSE
θ value	θ > 10 (rank : 447)	NC score	0.202426 (rank : 180)
Query Neighborhood Hits	331	Target Neighborhood Hits	332	Shared Neighborhood Hits	197
SwissProt Accessions	P42580, Q9JHF2, Q9JKW5, Q9JKW6, Q9JKW9, Q9JKX0, Q9JKX1	Gene names	Nkx1-2, Nkx1.1, Sax1
Domain Architecture
Description	NK1 transcription factor-related protein 2 (Homeobox protein SAX-1) (NKX-1.1).

NKX28_HUMAN
θ value	θ > 10 (rank : 448)	NC score	0.211758 (rank : 159)
Query Neighborhood Hits	331	Target Neighborhood Hits	352	Shared Neighborhood Hits	220
SwissProt Accessions	O15522	Gene names	NKX2-8, NKX-2.8, NKX2G, NKX2H
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H).

NKX32_HUMAN
θ value	θ > 10 (rank : 449)	NC score	0.184538 (rank : 218)
Query Neighborhood Hits	331	Target Neighborhood Hits	323	Shared Neighborhood Hits	203
SwissProt Accessions	P78367	Gene names	BAPX1, NKX3B
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

NKX32_MOUSE
θ value	θ > 10 (rank : 450)	NC score	0.187352 (rank : 214)
Query Neighborhood Hits	331	Target Neighborhood Hits	326	Shared Neighborhood Hits	204
SwissProt Accessions	P97503	Gene names	Bapx1, Nkx-3.2, Nkx3-2, Nkx3b
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

OTX2_HUMAN
θ value	θ > 10 (rank : 451)	NC score	0.232196 (rank : 101)
Query Neighborhood Hits	331	Target Neighborhood Hits	341	Shared Neighborhood Hits	201
SwissProt Accessions	P32243, Q6GTV3, Q9HAW3, Q9P2R1	Gene names	OTX2
Domain Architecture
Description	Homeobox protein OTX2.

PAX2_HUMAN
θ value	θ > 10 (rank : 452)	NC score	0.059777 (rank : 378)
Query Neighborhood Hits	331	Target Neighborhood Hits	84	Shared Neighborhood Hits	40
SwissProt Accessions	Q02962, Q15105, Q15110, Q15837	Gene names	PAX2
Domain Architecture
Description	Paired box protein Pax-2.

PAX2_MOUSE
θ value	θ > 10 (rank : 453)	NC score	0.059880 (rank : 377)
Query Neighborhood Hits	331	Target Neighborhood Hits	86	Shared Neighborhood Hits	40
SwissProt Accessions	P32114	Gene names	Pax2, Pax-2
Domain Architecture
Description	Paired box protein Pax-2.

PAX5_HUMAN
θ value	θ > 10 (rank : 454)	NC score	0.055779 (rank : 383)
Query Neighborhood Hits	331	Target Neighborhood Hits	106	Shared Neighborhood Hits	36
SwissProt Accessions	Q02548, O75933	Gene names	PAX5
Domain Architecture
Description	Paired box protein Pax-5 (B-cell-specific transcription factor) (BSAP).

PAX5_MOUSE
θ value	θ > 10 (rank : 455)	NC score	0.055921 (rank : 381)
Query Neighborhood Hits	331	Target Neighborhood Hits	106	Shared Neighborhood Hits	36
SwissProt Accessions	Q02650	Gene names	Pax5, Pax-5
Domain Architecture
Description	Paired box protein Pax-5 (B-cell-specific transcription factor) (BSAP).

PAX8_MOUSE
θ value	θ > 10 (rank : 456)	NC score	0.051710 (rank : 387)
Query Neighborhood Hits	331	Target Neighborhood Hits	62	Shared Neighborhood Hits	21
SwissProt Accessions	Q00288, P97342	Gene names	Pax8, Pax-8
Domain Architecture
Description	Paired box protein Pax-8.

PEPP2_HUMAN
θ value	θ > 10 (rank : 457)	NC score	0.210392 (rank : 163)
Query Neighborhood Hits	331	Target Neighborhood Hits	316	Shared Neighborhood Hits	188
SwissProt Accessions	Q9BQY4, Q9BR00	Gene names	PEPP2, THG1
Domain Architecture
Description	Paired-like homeobox protein PEPP-2 (Testis homeobox gene 1).

PHX2B_HUMAN
θ value	θ > 10 (rank : 458)	NC score	0.229594 (rank : 106)
Query Neighborhood Hits	331	Target Neighborhood Hits	407	Shared Neighborhood Hits	207
SwissProt Accessions	Q99453, Q6PJD9	Gene names	PHOX2B, PMX2B
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

PHX2B_MOUSE
θ value	θ > 10 (rank : 459)	NC score	0.229594 (rank : 107)
Query Neighborhood Hits	331	Target Neighborhood Hits	407	Shared Neighborhood Hits	207
SwissProt Accessions	O35690	Gene names	Phox2b, Pmx2b
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

PO3F4_HUMAN
θ value	θ > 10 (rank : 460)	NC score	0.128047 (rank : 334)
Query Neighborhood Hits	331	Target Neighborhood Hits	297	Shared Neighborhood Hits	171
SwissProt Accessions	P49335, Q5H9G9, Q99410	Gene names	POU3F4, BRN4, OTF9
Domain Architecture
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

PO3F4_MOUSE
θ value	θ > 10 (rank : 461)	NC score	0.128117 (rank : 333)
Query Neighborhood Hits	331	Target Neighborhood Hits	281	Shared Neighborhood Hits	170
SwissProt Accessions	P62515, P25216	Gene names	Pou3f4, Brn-4, Brn4, Otf9
Domain Architecture	No domain graphic available
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

PO5F1_MOUSE
θ value	θ > 10 (rank : 462)	NC score	0.135917 (rank : 330)
Query Neighborhood Hits	331	Target Neighborhood Hits	305	Shared Neighborhood Hits	172
SwissProt Accessions	P20263, Q63843	Gene names	Pou5f1, Oct-3, Oct-4, Otf-3, Otf3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4) (NF-A3).

PO5FL_HUMAN
θ value	θ > 10 (rank : 463)	NC score	0.104061 (rank : 341)
Query Neighborhood Hits	331	Target Neighborhood Hits	214	Shared Neighborhood Hits	132
SwissProt Accessions	Q06416, Q9BZV9	Gene names	POU5F1P1, OTF3C, POU5FLC8
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 1 (Octamer- binding protein 3-like).

PO5FM_HUMAN
θ value	θ > 10 (rank : 464)	NC score	0.104928 (rank : 339)
Query Neighborhood Hits	331	Target Neighborhood Hits	212	Shared Neighborhood Hits	135
SwissProt Accessions	Q9BZV7	Gene names	POU5F1P1, POU5FLC20
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 2.

PO5FN_HUMAN
θ value	θ > 10 (rank : 465)	NC score	0.096298 (rank : 350)
Query Neighborhood Hits	331	Target Neighborhood Hits	134	Shared Neighborhood Hits	94
SwissProt Accessions	Q9BZW0	Gene names	POU5FLC1
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 3.

PO6F2_HUMAN
θ value	θ > 10 (rank : 466)	NC score	0.195888 (rank : 199)
Query Neighborhood Hits	331	Target Neighborhood Hits	618	Shared Neighborhood Hits	204
SwissProt Accessions	P78424, P78425, Q75ME8, Q86UM6, Q9UDS7	Gene names	POU6F2, RPF1
Domain Architecture
Description	POU domain, class 6, transcription factor 2 (Retina-derived POU-domain factor 1) (RPF-1).

PO6F2_MOUSE
θ value	θ > 10 (rank : 467)	NC score	0.196977 (rank : 195)
Query Neighborhood Hits	331	Target Neighborhood Hits	639	Shared Neighborhood Hits	211
SwissProt Accessions	Q8BJI4	Gene names	Pou6f2
Domain Architecture	No domain graphic available
Description	POU domain, class 6, transcription factor 2.

RBTN1_HUMAN
θ value	θ > 10 (rank : 468)	NC score	0.087374 (rank : 362)
Query Neighborhood Hits	331	Target Neighborhood Hits	110	Shared Neighborhood Hits	24
SwissProt Accessions	P25800, Q4VBC5	Gene names	LMO1, RBTN1, RHOM1, TTG1
Domain Architecture
Description	Rhombotin-1 (Cysteine-rich protein TTG-1) (T-cell translocation protein 1) (LIM-only protein 1).

RBTN1_MOUSE
θ value	θ > 10 (rank : 469)	NC score	0.087370 (rank : 363)
Query Neighborhood Hits	331	Target Neighborhood Hits	109	Shared Neighborhood Hits	24
SwissProt Accessions	Q924W9	Gene names	Lmo1, Rbtn1, Rhom1, Ttg1
Domain Architecture	No domain graphic available
Description	Rhombotin-1 (Cysteine-rich protein TTG-1) (LIM-only protein 1).

RBTN2_HUMAN
θ value	θ > 10 (rank : 470)	NC score	0.084126 (rank : 366)
Query Neighborhood Hits	331	Target Neighborhood Hits	114	Shared Neighborhood Hits	24
SwissProt Accessions	P25791, Q9HD58	Gene names	LMO2, RBTN2, RHOM2, TTG2
Domain Architecture
Description	Rhombotin-2 (Cysteine-rich protein TTG-2) (T-cell translocation protein 2) (LIM-only protein 2).

RBTN2_MOUSE
θ value	θ > 10 (rank : 471)	NC score	0.084128 (rank : 365)
Query Neighborhood Hits	331	Target Neighborhood Hits	114	Shared Neighborhood Hits	24
SwissProt Accessions	P25801	Gene names	Lmo2, Rbtn-2, Rbtn2, Rhom-2
Domain Architecture
Description	Rhombotin-2 (Cysteine-rich protein TTG-2) (T-cell translocation protein 2) (LIM-only protein 2).

RHOX5_MOUSE
θ value	θ > 10 (rank : 472)	NC score	0.069733 (rank : 372)
Query Neighborhood Hits	331	Target Neighborhood Hits	69	Shared Neighborhood Hits	39
SwissProt Accessions	P52651	Gene names	Rhox5, Pem
Domain Architecture	No domain graphic available
Description	Homeobox protein Rhox5 (Reproductive homeobox on chromosome X 5) (Homeobox protein Pem) (Placenta and embryonic expression protein).

SPRM1_HUMAN
θ value	θ > 10 (rank : 473)	NC score	0.070565 (rank : 371)
Query Neighborhood Hits	331	Target Neighborhood Hits	72	Shared Neighborhood Hits	53
SwissProt Accessions	Q8N7G0, Q8N748	Gene names	SPRM1
Domain Architecture
Description	Sperm 1 POU-domain transcription factor (SPRM-1).

SPRM1_MOUSE
θ value	θ > 10 (rank : 474)	NC score	0.070576 (rank : 370)
Query Neighborhood Hits	331	Target Neighborhood Hits	73	Shared Neighborhood Hits	52
SwissProt Accessions	Q9DAC9	Gene names	Sprm1
Domain Architecture
Description	Sperm 1 POU-domain transcription factor (SPRM-1).

TF2LX_HUMAN
θ value	θ > 10 (rank : 475)	NC score	0.145591 (rank : 309)
Query Neighborhood Hits	331	Target Neighborhood Hits	108	Shared Neighborhood Hits	64
SwissProt Accessions	Q8IUE1	Gene names	TGIF2LX, TGIFLX
Domain Architecture
Description	Homeobox protein TGIF2LX (TGFB-induced factor 2-like protein, X- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the X).

TF2LY_HUMAN
θ value	θ > 10 (rank : 476)	NC score	0.135550 (rank : 331)
Query Neighborhood Hits	331	Target Neighborhood Hits	90	Shared Neighborhood Hits	61
SwissProt Accessions	Q8IUE0	Gene names	TGIF2LY, TGIFLY
Domain Architecture
Description	Homeobox protein TGIF2LY (TGFB-induced factor 2-like protein, Y- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the Y).

TGIF2_HUMAN
θ value	θ > 10 (rank : 477)	NC score	0.099494 (rank : 343)
Query Neighborhood Hits	331	Target Neighborhood Hits	94	Shared Neighborhood Hits	51
SwissProt Accessions	Q9GZN2	Gene names	TGIF2
Domain Architecture
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

TGIF2_MOUSE
θ value	θ > 10 (rank : 478)	NC score	0.104928 (rank : 340)
Query Neighborhood Hits	331	Target Neighborhood Hits	127	Shared Neighborhood Hits	59
SwissProt Accessions	Q8C0Y1	Gene names	Tgif2
Domain Architecture	No domain graphic available
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

TGIF_HUMAN
θ value	θ > 10 (rank : 479)	NC score	0.087096 (rank : 364)
Query Neighborhood Hits	331	Target Neighborhood Hits	109	Shared Neighborhood Hits	51
SwissProt Accessions	Q15583, Q6ICR0, Q8N5X9, Q9NRS0	Gene names	TGIF
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

TGIF_MOUSE
θ value	θ > 10 (rank : 480)	NC score	0.089631 (rank : 358)
Query Neighborhood Hits	331	Target Neighborhood Hits	125	Shared Neighborhood Hits	52
SwissProt Accessions	P70284, Q921F9, Q99JS3	Gene names	Tgif
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

TLX2_HUMAN
θ value	θ > 10 (rank : 481)	NC score	0.196168 (rank : 197)
Query Neighborhood Hits	331	Target Neighborhood Hits	352	Shared Neighborhood Hits	206
SwissProt Accessions	O43763, Q9UQ48	Gene names	TLX2, HOX11L1, NCX
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Neural crest homeobox protein).

TLX2_MOUSE
θ value	θ > 10 (rank : 482)	NC score	0.196125 (rank : 198)
Query Neighborhood Hits	331	Target Neighborhood Hits	336	Shared Neighborhood Hits	205
SwissProt Accessions	Q61663	Gene names	Tlx2, Hox11l1, Tlx1l1
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Homeobox TLX-2) (PMUR10F).

ZCH10_HUMAN
θ value	θ > 10 (rank : 483)	NC score	0.055880 (rank : 382)
Query Neighborhood Hits	331	Target Neighborhood Hits	123	Shared Neighborhood Hits	9
SwissProt Accessions	Q8TBK6, Q9NXR4	Gene names	ZCCHC10
Domain Architecture	No domain graphic available
Description	Zinc finger CCHC domain-containing protein 10.

ZN409_HUMAN
θ value	θ > 10 (rank : 484)	NC score	0.063292 (rank : 376)
Query Neighborhood Hits	331	Target Neighborhood Hits	842	Shared Neighborhood Hits	60
SwissProt Accessions	Q9UPU6	Gene names	ZNF409, KIAA1056
Domain Architecture	No domain graphic available
Description	Zinc finger protein 409.

Hits sorted by NC score

ZHX3_HUMAN
NC score	0.999962 (rank : 1)	θ value	0 (rank : 1)
Query Neighborhood Hits	331	Target Neighborhood Hits	331	Shared Neighborhood Hits	331
SwissProt Accessions	Q9H4I2, O43145	Gene names	ZHX3, KIAA0395, TIX1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

ZHX3_MOUSE
NC score	0.976353 (rank : 2)	θ value	0 (rank : 2)
Query Neighborhood Hits	331	Target Neighborhood Hits	321	Shared Neighborhood Hits	245
SwissProt Accessions	Q8C0Q2, Q80U14	Gene names	Zhx3, Kiaa0395, Tix1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

ZHX1_HUMAN
NC score	0.908799 (rank : 3)	θ value	1.93155e-127 (rank : 3)
Query Neighborhood Hits	331	Target Neighborhood Hits	307	Shared Neighborhood Hits	184
SwissProt Accessions	Q9UKY1, Q8IWD8	Gene names	ZHX1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

ZHX1_MOUSE
NC score	0.908777 (rank : 4)	θ value	2.61056e-124 (rank : 4)
Query Neighborhood Hits	331	Target Neighborhood Hits	334	Shared Neighborhood Hits	188
SwissProt Accessions	P70121, Q8BQ68, Q8C6T4, Q8CJG3	Gene names	Zhx1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

ZHX2_HUMAN
NC score	0.885296 (rank : 5)	θ value	9.63072e-111 (rank : 6)
Query Neighborhood Hits	331	Target Neighborhood Hits	347	Shared Neighborhood Hits	183
SwissProt Accessions	Q9Y6X8	Gene names	ZHX2, AFR1, KIAA0854, RAF
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

ZHX2_MOUSE
NC score	0.875832 (rank : 6)	θ value	4.61877e-113 (rank : 5)
Query Neighborhood Hits	331	Target Neighborhood Hits	435	Shared Neighborhood Hits	187
SwissProt Accessions	Q8C0C0	Gene names	Zhx2, Afr1, Raf
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

HOMEZ_HUMAN
NC score	0.616870 (rank : 7)	θ value	6.40375e-22 (rank : 7)
Query Neighborhood Hits	331	Target Neighborhood Hits	110	Shared Neighborhood Hits	49
SwissProt Accessions	Q8IX15, Q6P049, Q86XB6, Q9P2A5	Gene names	HOMEZ, KIAA1443
Domain Architecture
Description	Homeobox and leucine zipper protein Homez (Homeodomain leucine zipper- containing factor).

HOMEZ_MOUSE
NC score	0.603832 (rank : 8)	θ value	2.06002e-20 (rank : 8)
Query Neighborhood Hits	331	Target Neighborhood Hits	61	Shared Neighborhood Hits	20
SwissProt Accessions	Q80W88	Gene names	Homez, Kiaa1443
Domain Architecture
Description	Homeobox and leucine zipper protein Homez (Homeodomain leucine zipper- containing factor).

PROP1_HUMAN
NC score	0.309459 (rank : 9)	θ value	5.44631e-05 (rank : 11)
Query Neighborhood Hits	331	Target Neighborhood Hits	354	Shared Neighborhood Hits	216
SwissProt Accessions	O75360	Gene names	PROP1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

SIX4_HUMAN
NC score	0.306890 (rank : 10)	θ value	9.29e-05 (rank : 12)
Query Neighborhood Hits	331	Target Neighborhood Hits	342	Shared Neighborhood Hits	203
SwissProt Accessions	Q9UIU6	Gene names	SIX4
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4).

SIX4_MOUSE
NC score	0.305086 (rank : 11)	θ value	9.29e-05 (rank : 13)
Query Neighborhood Hits	331	Target Neighborhood Hits	341	Shared Neighborhood Hits	201
SwissProt Accessions	Q61321, Q61322, Q61323	Gene names	Six4, Arec3
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4) (Skeletal muscle-specific ARE-binding protein AREC3).

PROP1_MOUSE
NC score	0.300921 (rank : 12)	θ value	0.00102713 (rank : 18)
Query Neighborhood Hits	331	Target Neighborhood Hits	361	Shared Neighborhood Hits	215
SwissProt Accessions	P97458	Gene names	Prop1, Prop-1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

GSCL_MOUSE
NC score	0.282712 (rank : 13)	θ value	0.0193708 (rank : 45)
Query Neighborhood Hits	331	Target Neighborhood Hits	339	Shared Neighborhood Hits	206
SwissProt Accessions	P56916	Gene names	Gscl
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid-like (GSC-2).

GSCL_HUMAN
NC score	0.281736 (rank : 14)	θ value	0.00869519 (rank : 33)
Query Neighborhood Hits	331	Target Neighborhood Hits	343	Shared Neighborhood Hits	206
SwissProt Accessions	O15499	Gene names	GSCL
Domain Architecture
Description	Homeobox protein goosecoid-like (GSC-2).

PITX3_HUMAN
NC score	0.271700 (rank : 15)	θ value	0.0193708 (rank : 50)
Query Neighborhood Hits	331	Target Neighborhood Hits	366	Shared Neighborhood Hits	222
SwissProt Accessions	O75364	Gene names	PITX3, PTX3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

PITX2_HUMAN
NC score	0.270889 (rank : 16)	θ value	0.0431538 (rank : 60)
Query Neighborhood Hits	331	Target Neighborhood Hits	381	Shared Neighborhood Hits	221
SwissProt Accessions	Q99697, O60578, O60579, O60580, Q9BY17	Gene names	PITX2, ARP1, RGS, RIEG, RIEG1
Domain Architecture
Description	Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription factor) (Solurshin) (ALL1-responsive protein ARP1).

GSC_MOUSE
NC score	0.270722 (rank : 17)	θ value	0.0148317 (rank : 40)
Query Neighborhood Hits	331	Target Neighborhood Hits	368	Shared Neighborhood Hits	217
SwissProt Accessions	Q02591	Gene names	Gsc
Domain Architecture
Description	Homeobox protein goosecoid.

PITX3_MOUSE
NC score	0.270497 (rank : 18)	θ value	0.0193708 (rank : 51)
Query Neighborhood Hits	331	Target Neighborhood Hits	380	Shared Neighborhood Hits	224
SwissProt Accessions	O35160	Gene names	Pitx3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

PITX2_MOUSE
NC score	0.269984 (rank : 19)	θ value	0.0431538 (rank : 61)
Query Neighborhood Hits	331	Target Neighborhood Hits	383	Shared Neighborhood Hits	220
SwissProt Accessions	P97474, O08646, O70336, P97933, Q9JLA0, Q9QXB8, Q9R1V9, Q9Z141	Gene names	Pitx2, Arp1, Brx1, Otlx2, Ptx2, Rgs
Domain Architecture
Description	Pituitary homeobox 2 (Orthodenticle-like homeobox 2) (Solurshin) (ALL1-responsive protein ARP1) (BRX1 homeoprotein) (Paired-like homeodomain transcription factor Munc 30).

GSC_HUMAN
NC score	0.268251 (rank : 20)	θ value	0.163984 (rank : 94)
Query Neighborhood Hits	331	Target Neighborhood Hits	369	Shared Neighborhood Hits	220
SwissProt Accessions	P56915, Q86YR1	Gene names	GSC
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid.

IRX2_HUMAN
NC score	0.268176 (rank : 21)	θ value	0.000786445 (rank : 17)
Query Neighborhood Hits	331	Target Neighborhood Hits	358	Shared Neighborhood Hits	142
SwissProt Accessions	Q9BZI1, Q7Z2I7	Gene names	IRX2, IRXA2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

SIX2_MOUSE
NC score	0.268172 (rank : 22)	θ value	0.0563607 (rank : 67)
Query Neighborhood Hits	331	Target Neighborhood Hits	376	Shared Neighborhood Hits	218
SwissProt Accessions	Q62232, P70179	Gene names	Six2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

PITX1_HUMAN
NC score	0.267249 (rank : 23)	θ value	0.0736092 (rank : 71)
Query Neighborhood Hits	331	Target Neighborhood Hits	353	Shared Neighborhood Hits	217
SwissProt Accessions	P78337, O14677, O60425, Q9BTI5	Gene names	PITX1, BFT, PTX1
Domain Architecture
Description	Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot).

IRX2_MOUSE
NC score	0.266596 (rank : 24)	θ value	0.00390308 (rank : 23)
Query Neighborhood Hits	331	Target Neighborhood Hits	264	Shared Neighborhood Hits	137
SwissProt Accessions	P81066, O55121, Q9ERN1	Gene names	Irx2, Irxa2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

DUX1_HUMAN
NC score	0.266175 (rank : 25)	θ value	0.279714 (rank : 110)
Query Neighborhood Hits	331	Target Neighborhood Hits	330	Shared Neighborhood Hits	206
SwissProt Accessions	O43812	Gene names	DUX1
Domain Architecture	No domain graphic available
Description	Double homeobox protein 1.

IRX6_HUMAN
NC score	0.266143 (rank : 26)	θ value	0.00509761 (rank : 29)
Query Neighborhood Hits	331	Target Neighborhood Hits	262	Shared Neighborhood Hits	150
SwissProt Accessions	P78412, Q7Z2K0	Gene names	IRX6, IRX7, IRXB3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

PITX1_MOUSE
NC score	0.265945 (rank : 27)	θ value	0.0736092 (rank : 72)
Query Neighborhood Hits	331	Target Neighborhood Hits	362	Shared Neighborhood Hits	221
SwissProt Accessions	P70314, O54742, P70427	Gene names	Pitx1, Bft, Potx, Ptx1
Domain Architecture
Description	Pituitary homeobox 1 (Homeobox protein P-OTX) (Pituitary OTX-related factor) (Hindlimb expressed homeobox protein backfoot) (Ptx1).

PEPP1_HUMAN
NC score	0.265703 (rank : 28)	θ value	3.0926 (rank : 231)
Query Neighborhood Hits	331	Target Neighborhood Hits	338	Shared Neighborhood Hits	208
SwissProt Accessions	Q8NHV9, O95030, Q3SYE0	Gene names	PEPP1, OTEX
Domain Architecture
Description	Paired-like homeobox protein PEPP-1 (Ovary-, testis- and epididymis- expressed gene protein).

SIX2_HUMAN
NC score	0.265220 (rank : 29)	θ value	0.0736092 (rank : 73)
Query Neighborhood Hits	331	Target Neighborhood Hits	345	Shared Neighborhood Hits	206
SwissProt Accessions	Q9NPC8, Q9BXH7	Gene names	SIX2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

DUX5_HUMAN
NC score	0.265061 (rank : 30)	θ value	0.279714 (rank : 111)
Query Neighborhood Hits	331	Target Neighborhood Hits	330	Shared Neighborhood Hits	206
SwissProt Accessions	Q96PT3	Gene names	DUX5
Domain Architecture	No domain graphic available
Description	Double homeobox protein 5.

SIX1_MOUSE
NC score	0.262618 (rank : 31)	θ value	0.0961366 (rank : 85)
Query Neighborhood Hits	331	Target Neighborhood Hits	341	Shared Neighborhood Hits	209
SwissProt Accessions	Q62231, Q8CIL7	Gene names	Six1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

DUX4_HUMAN
NC score	0.262546 (rank : 32)	θ value	0.813845 (rank : 150)
Query Neighborhood Hits	331	Target Neighborhood Hits	403	Shared Neighborhood Hits	215
SwissProt Accessions	Q9UBX2	Gene names	DUX4, DUX10
Domain Architecture	No domain graphic available
Description	Double homeobox protein 4 (Double homeobox protein 10) (Double homeobox protein 4/10).

IRX3_MOUSE
NC score	0.262423 (rank : 33)	θ value	0.00175202 (rank : 20)
Query Neighborhood Hits	331	Target Neighborhood Hits	303	Shared Neighborhood Hits	141
SwissProt Accessions	P81067	Gene names	Irx3, Irxb1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

IRX3_HUMAN
NC score	0.262348 (rank : 34)	θ value	0.00175202 (rank : 19)
Query Neighborhood Hits	331	Target Neighborhood Hits	342	Shared Neighborhood Hits	145
SwissProt Accessions	P78415, Q7Z4A4, Q7Z4A5, Q8IVC6	Gene names	IRX3, IRXB1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

SIX5_HUMAN
NC score	0.262270 (rank : 35)	θ value	0.0330416 (rank : 57)
Query Neighborhood Hits	331	Target Neighborhood Hits	386	Shared Neighborhood Hits	186
SwissProt Accessions	Q8N196	Gene names	SIX5, DMAHP
Domain Architecture	No domain graphic available
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein).

SIX1_HUMAN
NC score	0.262220 (rank : 36)	θ value	0.0961366 (rank : 84)
Query Neighborhood Hits	331	Target Neighborhood Hits	343	Shared Neighborhood Hits	209
SwissProt Accessions	Q15475, Q96H64	Gene names	SIX1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

IRX5_HUMAN
NC score	0.260668 (rank : 37)	θ value	0.00390308 (rank : 24)
Query Neighborhood Hits	331	Target Neighborhood Hits	362	Shared Neighborhood Hits	137
SwissProt Accessions	P78411, P78416, Q7Z2E1	Gene names	IRX5, IRX2A, IRXB2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2) (IRX-2A).

IRX5_MOUSE
NC score	0.258226 (rank : 38)	θ value	0.00390308 (rank : 25)
Query Neighborhood Hits	331	Target Neighborhood Hits	324	Shared Neighborhood Hits	137
SwissProt Accessions	Q9JKQ4, Q80WV4, Q9JLL5	Gene names	Irx5, Irxb2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2).

ZFHX2_HUMAN
NC score	0.256636 (rank : 39)	θ value	0.21417 (rank : 108)
Query Neighborhood Hits	331	Target Neighborhood Hits	1178	Shared Neighborhood Hits	261
SwissProt Accessions	Q9C0A1	Gene names	ZFHX2, KIAA1762
Domain Architecture
Description	Zinc finger homeobox protein 2.

ATBF1_HUMAN
NC score	0.255627 (rank : 40)	θ value	2.44474e-05 (rank : 10)
Query Neighborhood Hits	331	Target Neighborhood Hits	1547	Shared Neighborhood Hits	284
SwissProt Accessions	Q15911, O15101, Q13719	Gene names	ATBF1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

SIX5_MOUSE
NC score	0.255492 (rank : 41)	θ value	0.0330416 (rank : 58)
Query Neighborhood Hits	331	Target Neighborhood Hits	354	Shared Neighborhood Hits	175
SwissProt Accessions	P70178	Gene names	Six5, Dmahp
Domain Architecture
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein homolog).

SHOX_HUMAN
NC score	0.254422 (rank : 42)	θ value	0.163984 (rank : 102)
Query Neighborhood Hits	331	Target Neighborhood Hits	363	Shared Neighborhood Hits	205
SwissProt Accessions	O15266, O00412, O00413, O15267	Gene names	SHOX, PHOG
Domain Architecture
Description	Short stature homeobox protein (Short stature homeobox-containing protein) (Pseudoautosomal homeobox-containing osteogenic protein).

IRX6_MOUSE
NC score	0.254379 (rank : 43)	θ value	0.00390308 (rank : 26)
Query Neighborhood Hits	331	Target Neighborhood Hits	256	Shared Neighborhood Hits	149
SwissProt Accessions	Q9ER75	Gene names	Irx6, Irxb3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

PRRXL_MOUSE
NC score	0.252430 (rank : 44)	θ value	0.0431538 (rank : 62)
Query Neighborhood Hits	331	Target Neighborhood Hits	350	Shared Neighborhood Hits	218
SwissProt Accessions	Q8BYH0, Q8K3F8	Gene names	Prrxl1, Drg11
Domain Architecture	No domain graphic available
Description	Paired-related homeobox protein-like 1 (Dorsal root ganglion 11) (Homeobox protein DRG11).

LHX5_HUMAN
NC score	0.252059 (rank : 45)	θ value	0.0961366 (rank : 80)
Query Neighborhood Hits	331	Target Neighborhood Hits	453	Shared Neighborhood Hits	211
SwissProt Accessions	Q9H2C1	Gene names	LHX5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

ATBF1_MOUSE
NC score	0.251579 (rank : 46)	θ value	1.87187e-05 (rank : 9)
Query Neighborhood Hits	331	Target Neighborhood Hits	1841	Shared Neighborhood Hits	283
SwissProt Accessions	Q61329	Gene names	Atbf1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

OTP_MOUSE
NC score	0.251437 (rank : 47)	θ value	5.27518 (rank : 274)
Query Neighborhood Hits	331	Target Neighborhood Hits	387	Shared Neighborhood Hits	216
SwissProt Accessions	O09113	Gene names	Otp
Domain Architecture
Description	Homeobox protein orthopedia.

SHOX2_HUMAN
NC score	0.250874 (rank : 48)	θ value	0.163984 (rank : 100)
Query Neighborhood Hits	331	Target Neighborhood Hits	353	Shared Neighborhood Hits	203
SwissProt Accessions	O60902, O60465, O60467, O60903	Gene names	SHOX2, OG12X, SHOT
Domain Architecture
Description	Short stature homeobox protein 2 (Paired-related homeobox protein SHOT) (Homeobox protein Og12X).

SHOX2_MOUSE
NC score	0.250638 (rank : 49)	θ value	0.163984 (rank : 101)
Query Neighborhood Hits	331	Target Neighborhood Hits	348	Shared Neighborhood Hits	203
SwissProt Accessions	P70390, P70369	Gene names	Shox2, Og12x, Prx3
Domain Architecture
Description	Short stature homeobox protein 2 (Homeobox protein Og12X) (OG-12) (Paired family homeodomain protein Prx3).

IRX1_HUMAN
NC score	0.250252 (rank : 50)	θ value	0.00390308 (rank : 22)
Query Neighborhood Hits	331	Target Neighborhood Hits	285	Shared Neighborhood Hits	140
SwissProt Accessions	P78414, Q7Z2F8, Q8N312	Gene names	IRX1, IRXA1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

DUX3_HUMAN
NC score	0.249728 (rank : 51)	θ value	1.06291 (rank : 163)
Query Neighborhood Hits	331	Target Neighborhood Hits	312	Shared Neighborhood Hits	194
SwissProt Accessions	Q96PT4, Q9UND2	Gene names	DUX3
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 3.

RX_MOUSE
NC score	0.249625 (rank : 52)	θ value	0.0252991 (rank : 53)
Query Neighborhood Hits	331	Target Neighborhood Hits	429	Shared Neighborhood Hits	217
SwissProt Accessions	O35602, O08748	Gene names	Rax, Rx
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

PRRX2_MOUSE
NC score	0.249050 (rank : 53)	θ value	0.365318 (rank : 125)
Query Neighborhood Hits	331	Target Neighborhood Hits	351	Shared Neighborhood Hits	211
SwissProt Accessions	Q06348, Q61651	Gene names	Prrx2, Prx2, S8
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Homeobox protein S8).

CRX_HUMAN
NC score	0.248775 (rank : 54)	θ value	2.36792 (rank : 190)
Query Neighborhood Hits	331	Target Neighborhood Hits	360	Shared Neighborhood Hits	208
SwissProt Accessions	O43186	Gene names	CRX, CORD2
Domain Architecture
Description	Cone-rod homeobox protein.

PAX4_HUMAN
NC score	0.247819 (rank : 55)	θ value	0.0148317 (rank : 42)
Query Neighborhood Hits	331	Target Neighborhood Hits	367	Shared Neighborhood Hits	221
SwissProt Accessions	O43316, O95161, Q6B0H0	Gene names	PAX4
Domain Architecture
Description	Paired box protein Pax-4.

LHX1_HUMAN
NC score	0.247593 (rank : 56)	θ value	0.0961366 (rank : 78)
Query Neighborhood Hits	331	Target Neighborhood Hits	453	Shared Neighborhood Hits	210
SwissProt Accessions	P48742, Q3MIW0	Gene names	LHX1, LIM1
Domain Architecture
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

IRX1_MOUSE
NC score	0.247150 (rank : 57)	θ value	0.00509761 (rank : 28)
Query Neighborhood Hits	331	Target Neighborhood Hits	269	Shared Neighborhood Hits	138
SwissProt Accessions	P81068, O55120, Q9JLL6	Gene names	Irx1, Irxa1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

LHX1_MOUSE
NC score	0.247125 (rank : 58)	θ value	0.0961366 (rank : 79)
Query Neighborhood Hits	331	Target Neighborhood Hits	453	Shared Neighborhood Hits	210
SwissProt Accessions	P63006, P36199	Gene names	Lhx1, Lim-1, Lim1
Domain Architecture	No domain graphic available
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

RX_HUMAN
NC score	0.247098 (rank : 59)	θ value	0.00665767 (rank : 31)
Query Neighborhood Hits	331	Target Neighborhood Hits	423	Shared Neighborhood Hits	218
SwissProt Accessions	Q9Y2V3	Gene names	RAX, RX
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

LHX5_MOUSE
NC score	0.247083 (rank : 60)	θ value	0.0961366 (rank : 81)
Query Neighborhood Hits	331	Target Neighborhood Hits	456	Shared Neighborhood Hits	211
SwissProt Accessions	P61375, P50459	Gene names	Lhx5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

LHX4_HUMAN
NC score	0.246693 (rank : 61)	θ value	0.00390308 (rank : 27)
Query Neighborhood Hits	331	Target Neighborhood Hits	455	Shared Neighborhood Hits	218
SwissProt Accessions	Q969G2, Q8NHE0, Q8TCJ1, Q8WWX2, Q969W2	Gene names	LHX4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

DLX5_MOUSE
NC score	0.246459 (rank : 62)	θ value	0.163984 (rank : 93)
Query Neighborhood Hits	331	Target Neighborhood Hits	434	Shared Neighborhood Hits	223
SwissProt Accessions	P70396, O54876, O54877, O54878, Q9JJ45	Gene names	Dlx5
Domain Architecture
Description	Homeobox protein DLX-5.

PRRX2_HUMAN
NC score	0.246457 (rank : 63)	θ value	0.279714 (rank : 114)
Query Neighborhood Hits	331	Target Neighborhood Hits	348	Shared Neighborhood Hits	210
SwissProt Accessions	Q99811, Q9UIB3	Gene names	PRRX2, PMX2, PRX2
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Paired-related homeobox protein 2).

LHX8_MOUSE
NC score	0.246114 (rank : 64)	θ value	0.0193708 (rank : 48)
Query Neighborhood Hits	331	Target Neighborhood Hits	406	Shared Neighborhood Hits	202
SwissProt Accessions	O35652, O70163, O88707	Gene names	Lhx8, Lhx7
Domain Architecture
Description	LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3).

LHX4_MOUSE
NC score	0.245797 (rank : 65)	θ value	0.00509761 (rank : 30)
Query Neighborhood Hits	331	Target Neighborhood Hits	457	Shared Neighborhood Hits	218
SwissProt Accessions	P53776, O08916, Q9R280	Gene names	Lhx4, Gsh-4, Gsh4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

OTX1_HUMAN
NC score	0.245584 (rank : 66)	θ value	0.163984 (rank : 97)
Query Neighborhood Hits	331	Target Neighborhood Hits	379	Shared Neighborhood Hits	206
SwissProt Accessions	P32242, Q53TG6	Gene names	OTX1
Domain Architecture
Description	Homeobox protein OTX1.

PRRX1_HUMAN
NC score	0.245506 (rank : 67)	θ value	0.163984 (rank : 98)
Query Neighborhood Hits	331	Target Neighborhood Hits	347	Shared Neighborhood Hits	212
SwissProt Accessions	P54821, O60807	Gene names	PRRX1, PMX1
Domain Architecture
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein PHOX1).

PRRX1_MOUSE
NC score	0.245397 (rank : 68)	θ value	0.163984 (rank : 99)
Query Neighborhood Hits	331	Target Neighborhood Hits	346	Shared Neighborhood Hits	210
SwissProt Accessions	P63013, P43271, Q02810	Gene names	Prrx1, Pmx, Pmx1
Domain Architecture	No domain graphic available
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein mHox) (Homeobox protein K-2).

CRX_MOUSE
NC score	0.244800 (rank : 69)	θ value	2.36792 (rank : 191)
Query Neighborhood Hits	331	Target Neighborhood Hits	359	Shared Neighborhood Hits	206
SwissProt Accessions	O54751	Gene names	Crx
Domain Architecture
Description	Cone-rod homeobox protein.

PAX7_MOUSE
NC score	0.244037 (rank : 70)	θ value	0.0961366 (rank : 83)
Query Neighborhood Hits	331	Target Neighborhood Hits	422	Shared Neighborhood Hits	222
SwissProt Accessions	P47239, Q9ES16	Gene names	Pax7, Pax-7
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-7.

DLX5_HUMAN
NC score	0.243961 (rank : 71)	θ value	0.163984 (rank : 92)
Query Neighborhood Hits	331	Target Neighborhood Hits	405	Shared Neighborhood Hits	223
SwissProt Accessions	P56178, Q9UPL1	Gene names	DLX5
Domain Architecture
Description	Homeobox protein DLX-5.

PAX3_MOUSE
NC score	0.243561 (rank : 72)	θ value	0.00869519 (rank : 36)
Query Neighborhood Hits	331	Target Neighborhood Hits	478	Shared Neighborhood Hits	216
SwissProt Accessions	P24610, Q3UFQ9, Q8BRE7, Q9CXI6	Gene names	Pax3, Pax-3
Domain Architecture
Description	Paired box protein Pax-3.

PAX3_HUMAN
NC score	0.243181 (rank : 73)	θ value	0.00869519 (rank : 35)
Query Neighborhood Hits	331	Target Neighborhood Hits	513	Shared Neighborhood Hits	215
SwissProt Accessions	P23760, Q16448	Gene names	PAX3, HUP2
Domain Architecture
Description	Paired box protein Pax-3 (HUP2).

PAX7_HUMAN
NC score	0.242761 (rank : 74)	θ value	0.0961366 (rank : 82)
Query Neighborhood Hits	331	Target Neighborhood Hits	456	Shared Neighborhood Hits	222
SwissProt Accessions	P23759	Gene names	PAX7, HUP1
Domain Architecture
Description	Paired box protein Pax-7 (HUP1).

LHX6_MOUSE
NC score	0.242512 (rank : 75)	θ value	0.47712 (rank : 135)
Query Neighborhood Hits	331	Target Neighborhood Hits	399	Shared Neighborhood Hits	196
SwissProt Accessions	O88706	Gene names	Lhx6
Domain Architecture
Description	LIM/homeobox protein Lhx6.

PAX4_MOUSE
NC score	0.240685 (rank : 76)	θ value	0.62314 (rank : 143)
Query Neighborhood Hits	331	Target Neighborhood Hits	370	Shared Neighborhood Hits	219
SwissProt Accessions	P32115, P97341, Q9QUR1, Q9R091	Gene names	Pax4, Pax-4
Domain Architecture
Description	Paired box protein Pax-4.

ISL1_HUMAN
NC score	0.240645 (rank : 77)	θ value	0.0330416 (rank : 54)
Query Neighborhood Hits	331	Target Neighborhood Hits	421	Shared Neighborhood Hits	206
SwissProt Accessions	P61371, P20663, P47894	Gene names	ISL1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

ISL1_MOUSE
NC score	0.240645 (rank : 78)	θ value	0.0330416 (rank : 55)
Query Neighborhood Hits	331	Target Neighborhood Hits	421	Shared Neighborhood Hits	206
SwissProt Accessions	P61372, P20663, P47894, Q812D8	Gene names	Isl1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

OTX1_MOUSE
NC score	0.239715 (rank : 79)	θ value	2.36792 (rank : 199)
Query Neighborhood Hits	331	Target Neighborhood Hits	372	Shared Neighborhood Hits	209
SwissProt Accessions	P80205	Gene names	Otx1, Otx-1
Domain Architecture
Description	Homeobox protein OTX1.

LHX61_HUMAN
NC score	0.239601 (rank : 80)	θ value	0.47712 (rank : 134)
Query Neighborhood Hits	331	Target Neighborhood Hits	412	Shared Neighborhood Hits	198
SwissProt Accessions	Q9UPM6, Q5T7S8, Q9NTK3, Q9UPM5	Gene names	LHX6, LHX6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1 (Lhx6).

LHX2_HUMAN
NC score	0.239216 (rank : 81)	θ value	0.0148317 (rank : 41)
Query Neighborhood Hits	331	Target Neighborhood Hits	432	Shared Neighborhood Hits	202
SwissProt Accessions	P50458, O95860, Q8N1Z3	Gene names	LHX2, LH2
Domain Architecture
Description	LIM/homeobox protein Lhx2 (Homeobox protein LH-2).

DLX3_HUMAN
NC score	0.239064 (rank : 82)	θ value	0.0961366 (rank : 77)
Query Neighborhood Hits	331	Target Neighborhood Hits	369	Shared Neighborhood Hits	222
SwissProt Accessions	O60479	Gene names	DLX3
Domain Architecture
Description	Homeobox protein DLX-3.

LHX2_MOUSE
NC score	0.238957 (rank : 83)	θ value	0.0193708 (rank : 46)
Query Neighborhood Hits	331	Target Neighborhood Hits	431	Shared Neighborhood Hits	202
SwissProt Accessions	Q9Z0S2	Gene names	Lhx2
Domain Architecture
Description	LIM/homeobox protein Lhx2.

LHX3_HUMAN
NC score	0.238061 (rank : 84)	θ value	0.0330416 (rank : 56)
Query Neighborhood Hits	331	Target Neighborhood Hits	474	Shared Neighborhood Hits	225
SwissProt Accessions	Q9UBR4, Q9NZB5, Q9P0I8, Q9P0I9	Gene names	LHX3
Domain Architecture
Description	LIM/homeobox protein Lhx3.

IRX4_MOUSE
NC score	0.236640 (rank : 85)	θ value	0.0563607 (rank : 64)
Query Neighborhood Hits	331	Target Neighborhood Hits	286	Shared Neighborhood Hits	160
SwissProt Accessions	Q9QY61	Gene names	Irx4, Irxa3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

OTX2_MOUSE
NC score	0.236480 (rank : 86)	θ value	5.27518 (rank : 275)
Query Neighborhood Hits	331	Target Neighborhood Hits	345	Shared Neighborhood Hits	204
SwissProt Accessions	P80206	Gene names	Otx2, Otx-2
Domain Architecture
Description	Homeobox protein OTX2.

IRX4_HUMAN
NC score	0.236264 (rank : 87)	θ value	0.0563607 (rank : 63)
Query Neighborhood Hits	331	Target Neighborhood Hits	276	Shared Neighborhood Hits	162
SwissProt Accessions	P78413, Q9UHR2	Gene names	IRX4, IRXA3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

ISL2_HUMAN
NC score	0.235132 (rank : 88)	θ value	0.0563607 (rank : 65)
Query Neighborhood Hits	331	Target Neighborhood Hits	435	Shared Neighborhood Hits	208
SwissProt Accessions	Q96A47	Gene names	ISL2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

NKX61_MOUSE
NC score	0.234781 (rank : 89)	θ value	0.000461057 (rank : 16)
Query Neighborhood Hits	331	Target Neighborhood Hits	439	Shared Neighborhood Hits	217
SwissProt Accessions	Q99MA9, Q9ERQ7	Gene names	Nkx6-1, Nkx6.1, Nkx6a
Domain Architecture
Description	Homeobox protein Nkx-6.1.

EMX2_MOUSE
NC score	0.234339 (rank : 90)	θ value	0.125558 (rank : 88)
Query Neighborhood Hits	331	Target Neighborhood Hits	340	Shared Neighborhood Hits	218
SwissProt Accessions	Q04744, Q80UE7	Gene names	Emx2, Emx-2
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

EMX2_HUMAN
NC score	0.234035 (rank : 91)	θ value	0.125558 (rank : 87)
Query Neighborhood Hits	331	Target Neighborhood Hits	341	Shared Neighborhood Hits	217
SwissProt Accessions	Q04743, Q96NN8, Q9BQF4	Gene names	EMX2
Domain Architecture
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

LHX9_MOUSE
NC score	0.233974 (rank : 92)	θ value	0.21417 (rank : 105)
Query Neighborhood Hits	331	Target Neighborhood Hits	445	Shared Neighborhood Hits	202
SwissProt Accessions	Q9WUH2, Q9QYQ5, Q9QYQ6, Q9QZ00, Q9WU44	Gene names	Lhx9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

LHX9_HUMAN
NC score	0.233931 (rank : 93)	θ value	0.21417 (rank : 104)
Query Neighborhood Hits	331	Target Neighborhood Hits	444	Shared Neighborhood Hits	202
SwissProt Accessions	Q9NQ69, Q5VUE3, Q9BYU6, Q9NQ70	Gene names	LHX9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

DLX4_HUMAN
NC score	0.233648 (rank : 94)	θ value	1.06291 (rank : 162)
Query Neighborhood Hits	331	Target Neighborhood Hits	350	Shared Neighborhood Hits	210
SwissProt Accessions	Q92988, O60480, Q13265, Q6PJK0, Q9HBE0	Gene names	DLX4, BP1, DLX7, DLX8
Domain Architecture	No domain graphic available
Description	Homeobox protein DLX-4 (DLX-7) (DLX-8) (Beta protein 1).

NKX23_HUMAN
NC score	0.233463 (rank : 95)	θ value	0.0113563 (rank : 39)
Query Neighborhood Hits	331	Target Neighborhood Hits	346	Shared Neighborhood Hits	212
SwissProt Accessions	Q8TAU0, Q9NYS6	Gene names	NKX2-3, NKX23, NKX2C
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NKX-2.3) (Homeobox protein NK-2 homolog C).

NKX61_HUMAN
NC score	0.233256 (rank : 96)	θ value	0.000461057 (rank : 15)
Query Neighborhood Hits	331	Target Neighborhood Hits	431	Shared Neighborhood Hits	218
SwissProt Accessions	P78426	Gene names	NKX6-1, NKX6A
Domain Architecture
Description	Homeobox protein Nkx-6.1.

ESX1L_HUMAN
NC score	0.233035 (rank : 97)	θ value	θ > 10 (rank : 360)
Query Neighborhood Hits	331	Target Neighborhood Hits	498	Shared Neighborhood Hits	211
SwissProt Accessions	Q8N693, Q7Z6K7	Gene names	ESX1L, ESX1R
Domain Architecture
Description	Extraembryonic, spermatogenesis, homeobox 1-like protein.

LHX3_MOUSE
NC score	0.232479 (rank : 98)	θ value	0.0193708 (rank : 47)
Query Neighborhood Hits	331	Target Neighborhood Hits	451	Shared Neighborhood Hits	214
SwissProt Accessions	P50481, Q61800, Q61801	Gene names	Lhx3, Lim-3, Lim3, Plim
Domain Architecture
Description	LIM/homeobox protein Lhx3 (Homeobox protein LIM-3) (Homeobox protein P-LIM) (LIM homeobox protein 3).

ISL2_MOUSE
NC score	0.232372 (rank : 99)	θ value	0.0563607 (rank : 66)
Query Neighborhood Hits	331	Target Neighborhood Hits	426	Shared Neighborhood Hits	202
SwissProt Accessions	Q9CXV0	Gene names	Isl2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

DLX3_MOUSE
NC score	0.232241 (rank : 100)	θ value	0.0736092 (rank : 70)
Query Neighborhood Hits	331	Target Neighborhood Hits	367	Shared Neighborhood Hits	220
SwissProt Accessions	Q64205	Gene names	Dlx3
Domain Architecture
Description	Homeobox protein DLX-3.

OTX2_HUMAN
NC score	0.232196 (rank : 101)	θ value	θ > 10 (rank : 451)
Query Neighborhood Hits	331	Target Neighborhood Hits	341	Shared Neighborhood Hits	201
SwissProt Accessions	P32243, Q6GTV3, Q9HAW3, Q9P2R1	Gene names	OTX2
Domain Architecture
Description	Homeobox protein OTX2.

PAX6_HUMAN
NC score	0.231946 (rank : 102)	θ value	0.21417 (rank : 106)
Query Neighborhood Hits	331	Target Neighborhood Hits	383	Shared Neighborhood Hits	211
SwissProt Accessions	P26367, Q6N006, Q99413	Gene names	PAX6, AN2
Domain Architecture
Description	Paired box protein Pax-6 (Oculorhombin) (Aniridia type II protein).

PAX6_MOUSE
NC score	0.231946 (rank : 103)	θ value	0.21417 (rank : 107)
Query Neighborhood Hits	331	Target Neighborhood Hits	383	Shared Neighborhood Hits	211
SwissProt Accessions	P63015, P32117, P70601, Q62222, Q64037, Q8CEI5, Q8VDB5, Q921Q8	Gene names	Pax6, Pax-6, Sey
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-6 (Oculorhombin).

DLX2_HUMAN
NC score	0.230286 (rank : 104)	θ value	3.0926 (rank : 211)
Query Neighborhood Hits	331	Target Neighborhood Hits	355	Shared Neighborhood Hits	219
SwissProt Accessions	Q07687	Gene names	DLX2
Domain Architecture
Description	Homeobox protein DLX-2.

DLX2_MOUSE
NC score	0.229602 (rank : 105)	θ value	3.0926 (rank : 212)
Query Neighborhood Hits	331	Target Neighborhood Hits	352	Shared Neighborhood Hits	220
SwissProt Accessions	P40764	Gene names	Dlx2, Tes-1, Tes1
Domain Architecture
Description	Homeobox protein DLX-2 (Homeobox protein TES-1).

PHX2B_HUMAN
NC score	0.229594 (rank : 106)	θ value	θ > 10 (rank : 458)
Query Neighborhood Hits	331	Target Neighborhood Hits	407	Shared Neighborhood Hits	207
SwissProt Accessions	Q99453, Q6PJD9	Gene names	PHOX2B, PMX2B
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

PHX2B_MOUSE
NC score	0.229594 (rank : 107)	θ value	θ > 10 (rank : 459)
Query Neighborhood Hits	331	Target Neighborhood Hits	407	Shared Neighborhood Hits	207
SwissProt Accessions	O35690	Gene names	Phox2b, Pmx2b
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

NKX25_HUMAN
NC score	0.229529 (rank : 108)	θ value	0.47712 (rank : 137)
Query Neighborhood Hits	331	Target Neighborhood Hits	338	Shared Neighborhood Hits	211
SwissProt Accessions	P52952	Gene names	NKX2-5, CSX, NKX2.5, NKX2E
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

ALX3_MOUSE
NC score	0.229492 (rank : 109)	θ value	θ > 10 (rank : 334)
Query Neighborhood Hits	331	Target Neighborhood Hits	386	Shared Neighborhood Hits	219
SwissProt Accessions	O70137	Gene names	Alx3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

PHX2A_MOUSE
NC score	0.229392 (rank : 110)	θ value	8.99809 (rank : 318)
Query Neighborhood Hits	331	Target Neighborhood Hits	338	Shared Neighborhood Hits	204
SwissProt Accessions	Q62066	Gene names	Phox2a, Arix, Phox2, Pmx2, Pmx2a
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (PHOX2A homeodomain protein) (Aristaless homeobox protein homolog).

NKX23_MOUSE
NC score	0.229301 (rank : 111)	θ value	0.00869519 (rank : 34)
Query Neighborhood Hits	331	Target Neighborhood Hits	340	Shared Neighborhood Hits	208
SwissProt Accessions	P97334, Q9QZ60, Q9WV67	Gene names	Nkx2-3, Nkx-2.3, Nkx2c
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NK-2 homolog C) (Nkx2-C) (Homeobox protein NK-2 homolog 3).

PHX2A_HUMAN
NC score	0.228688 (rank : 112)	θ value	8.99809 (rank : 317)
Query Neighborhood Hits	331	Target Neighborhood Hits	345	Shared Neighborhood Hits	204
SwissProt Accessions	O14813, Q8IVZ2	Gene names	PHOX2A, ARIX, PMX2A
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (Aristaless homeobox protein homolog) (ARIX1 homeodomain protein).

VSX1_MOUSE
NC score	0.228316 (rank : 113)	θ value	8.99809 (rank : 328)
Query Neighborhood Hits	331	Target Neighborhood Hits	356	Shared Neighborhood Hits	198
SwissProt Accessions	Q91V10	Gene names	Vsx1, Rinx
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

ALX3_HUMAN
NC score	0.228272 (rank : 114)	θ value	θ > 10 (rank : 333)
Query Neighborhood Hits	331	Target Neighborhood Hits	380	Shared Neighborhood Hits	221
SwissProt Accessions	O95076, O95075	Gene names	ALX3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

LHX61_MOUSE
NC score	0.228189 (rank : 115)	θ value	0.813845 (rank : 154)
Query Neighborhood Hits	331	Target Neighborhood Hits	396	Shared Neighborhood Hits	191
SwissProt Accessions	Q9R1R0, Q9R1R1	Gene names	Lhx6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1.

NKX25_MOUSE
NC score	0.227747 (rank : 116)	θ value	0.47712 (rank : 138)
Query Neighborhood Hits	331	Target Neighborhood Hits	347	Shared Neighborhood Hits	212
SwissProt Accessions	P42582, P97335	Gene names	Nkx2-5, Csx, Nkx-2.5, Nkx2e
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

SIX6_HUMAN
NC score	0.227424 (rank : 117)	θ value	1.81305 (rank : 183)
Query Neighborhood Hits	331	Target Neighborhood Hits	269	Shared Neighborhood Hits	182
SwissProt Accessions	O95475, Q9P1X8	Gene names	SIX6, OPTX2, SIX9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Homeodomain protein OPTX2).

SIX3_HUMAN
NC score	0.227232 (rank : 118)	θ value	0.62314 (rank : 145)
Query Neighborhood Hits	331	Target Neighborhood Hits	285	Shared Neighborhood Hits	188
SwissProt Accessions	O95343	Gene names	SIX3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX3_MOUSE
NC score	0.227197 (rank : 119)	θ value	0.62314 (rank : 146)
Query Neighborhood Hits	331	Target Neighborhood Hits	289	Shared Neighborhood Hits	188
SwissProt Accessions	Q62233, P70176, P70177	Gene names	Six3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

ALX4_HUMAN
NC score	0.227046 (rank : 120)	θ value	θ > 10 (rank : 335)
Query Neighborhood Hits	331	Target Neighborhood Hits	394	Shared Neighborhood Hits	222
SwissProt Accessions	Q9H161, Q96JN7, Q9H198, Q9HAY9	Gene names	ALX4, KIAA1788
Domain Architecture
Description	Homeobox protein aristaless-like 4.

EMX1_HUMAN
NC score	0.226584 (rank : 121)	θ value	0.279714 (rank : 112)
Query Neighborhood Hits	331	Target Neighborhood Hits	336	Shared Neighborhood Hits	216
SwissProt Accessions	Q04741, Q86XB0	Gene names	EMX1
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty spiracles- like protein 1).

VSX1_HUMAN
NC score	0.224958 (rank : 122)	θ value	8.99809 (rank : 327)
Query Neighborhood Hits	331	Target Neighborhood Hits	344	Shared Neighborhood Hits	203
SwissProt Accessions	Q9NZR4, Q5TF40, Q5TF41, Q9HCU3, Q9NU27	Gene names	VSX1, RINX
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

SIX6_MOUSE
NC score	0.224338 (rank : 123)	θ value	1.81305 (rank : 184)
Query Neighborhood Hits	331	Target Neighborhood Hits	267	Shared Neighborhood Hits	184
SwissProt Accessions	Q9QZ28, O88423	Gene names	Six6, Optx2, Six9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Six9 protein).

HME2_HUMAN
NC score	0.224139 (rank : 124)	θ value	4.03905 (rank : 245)
Query Neighborhood Hits	331	Target Neighborhood Hits	355	Shared Neighborhood Hits	215
SwissProt Accessions	P19622	Gene names	EN2
Domain Architecture
Description	Homeobox protein engrailed-2 (Hu-En-2).

DBX1_MOUSE
NC score	0.224048 (rank : 125)	θ value	2.36792 (rank : 193)
Query Neighborhood Hits	331	Target Neighborhood Hits	346	Shared Neighborhood Hits	207
SwissProt Accessions	P52950	Gene names	Dbx1, Dbx
Domain Architecture
Description	Homeobox protein DBX1.

HME2_MOUSE
NC score	0.223877 (rank : 126)	θ value	4.03905 (rank : 246)
Query Neighborhood Hits	331	Target Neighborhood Hits	352	Shared Neighborhood Hits	215
SwissProt Accessions	P09066	Gene names	En2, En-2
Domain Architecture
Description	Homeobox protein engrailed-2 (Mo-En-2).

ALX4_MOUSE
NC score	0.223741 (rank : 127)	θ value	θ > 10 (rank : 336)
Query Neighborhood Hits	331	Target Neighborhood Hits	369	Shared Neighborhood Hits	225
SwissProt Accessions	O35137	Gene names	Alx4
Domain Architecture
Description	Homeobox protein aristaless-like 4 (ALX-4).

DLX1_MOUSE
NC score	0.221703 (rank : 128)	θ value	θ > 10 (rank : 356)
Query Neighborhood Hits	331	Target Neighborhood Hits	343	Shared Neighborhood Hits	219
SwissProt Accessions	Q64317	Gene names	Dlx1
Domain Architecture
Description	Homeobox protein DLX-1.

DLX1_HUMAN
NC score	0.221682 (rank : 129)	θ value	θ > 10 (rank : 355)
Query Neighborhood Hits	331	Target Neighborhood Hits	343	Shared Neighborhood Hits	219
SwissProt Accessions	P56177, Q53ZU4, Q8IYB2	Gene names	DLX1
Domain Architecture
Description	Homeobox protein DLX-1.

DLX6_HUMAN
NC score	0.219885 (rank : 130)	θ value	θ > 10 (rank : 358)
Query Neighborhood Hits	331	Target Neighborhood Hits	341	Shared Neighborhood Hits	220
SwissProt Accessions	P56179, Q3ZAR6, Q9UPL2	Gene names	DLX6
Domain Architecture
Description	Homeobox protein DLX-6.

ARX_HUMAN
NC score	0.218212 (rank : 131)	θ value	θ > 10 (rank : 337)
Query Neighborhood Hits	331	Target Neighborhood Hits	401	Shared Neighborhood Hits	209
SwissProt Accessions	Q96QS3	Gene names	ARX
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

ARX_MOUSE
NC score	0.217610 (rank : 132)	θ value	θ > 10 (rank : 338)
Query Neighborhood Hits	331	Target Neighborhood Hits	398	Shared Neighborhood Hits	208
SwissProt Accessions	O35085, Q9QYT4	Gene names	Arx
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

DLX4_MOUSE
NC score	0.217584 (rank : 133)	θ value	θ > 10 (rank : 357)
Query Neighborhood Hits	331	Target Neighborhood Hits	352	Shared Neighborhood Hits	209
SwissProt Accessions	P70436, Q3UM51, Q8R4I3	Gene names	Dlx4, Dlx7
Domain Architecture
Description	Homeobox protein DLX-4 (DLX-7).

CHX10_MOUSE
NC score	0.217412 (rank : 134)	θ value	6.88961 (rank : 285)
Query Neighborhood Hits	331	Target Neighborhood Hits	340	Shared Neighborhood Hits	202
SwissProt Accessions	Q61412	Gene names	Chx10, Vsx2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

HXC13_HUMAN
NC score	0.217290 (rank : 135)	θ value	1.38821 (rank : 168)
Query Neighborhood Hits	331	Target Neighborhood Hits	336	Shared Neighborhood Hits	212
SwissProt Accessions	P31276, Q96J32, Q9NR24, Q9NYD5	Gene names	HOXC13, HOX3G
Domain Architecture
Description	Homeobox protein Hox-C13 (Hox-3G).

HXC13_MOUSE
NC score	0.217264 (rank : 136)	θ value	1.38821 (rank : 169)
Query Neighborhood Hits	331	Target Neighborhood Hits	337	Shared Neighborhood Hits	212
SwissProt Accessions	P50207, Q53Z78, Q920I7	Gene names	Hoxc13, Hoxc-13
Domain Architecture
Description	Homeobox protein Hox-C13.

HESX1_HUMAN
NC score	0.216788 (rank : 137)	θ value	θ > 10 (rank : 368)
Query Neighborhood Hits	331	Target Neighborhood Hits	326	Shared Neighborhood Hits	200
SwissProt Accessions	Q9UBX0, Q99667	Gene names	HESX1, HANF
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (hAnf).

HME1_MOUSE
NC score	0.216599 (rank : 138)	θ value	6.88961 (rank : 290)
Query Neighborhood Hits	331	Target Neighborhood Hits	397	Shared Neighborhood Hits	210
SwissProt Accessions	P09065	Gene names	En1, En-1
Domain Architecture
Description	Homeobox protein engrailed-1 (Mo-En-1).

HME1_HUMAN
NC score	0.216475 (rank : 139)	θ value	6.88961 (rank : 289)
Query Neighborhood Hits	331	Target Neighborhood Hits	384	Shared Neighborhood Hits	209
SwissProt Accessions	Q05925	Gene names	EN1
Domain Architecture
Description	Homeobox protein engrailed-1 (Hu-En-1).

PO6F1_HUMAN
NC score	0.215894 (rank : 140)	θ value	0.0148317 (rank : 43)
Query Neighborhood Hits	331	Target Neighborhood Hits	370	Shared Neighborhood Hits	204
SwissProt Accessions	Q14863	Gene names	POU6F1, BRN5, MPOU, TCFB1
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (mPOU homeobox protein) (Brain-specific homeobox/POU domain protein 5) (Brain-5) (Brn-5 protein).

CHX10_HUMAN
NC score	0.215579 (rank : 141)	θ value	5.27518 (rank : 265)
Query Neighborhood Hits	331	Target Neighborhood Hits	340	Shared Neighborhood Hits	202
SwissProt Accessions	P58304	Gene names	CHX10, VSX2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

HHEX_MOUSE
NC score	0.214719 (rank : 142)	θ value	0.125558 (rank : 90)
Query Neighborhood Hits	331	Target Neighborhood Hits	350	Shared Neighborhood Hits	208
SwissProt Accessions	P43120	Gene names	Hhex, Prhx
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

CART1_HUMAN
NC score	0.214284 (rank : 143)	θ value	θ > 10 (rank : 347)
Query Neighborhood Hits	331	Target Neighborhood Hits	348	Shared Neighborhood Hits	213
SwissProt Accessions	Q15699, Q546C8, Q96FH4	Gene names	CART1
Domain Architecture
Description	Cartilage homeoprotein 1 (CART-1).

HESX1_MOUSE
NC score	0.214240 (rank : 144)	θ value	θ > 10 (rank : 369)
Query Neighborhood Hits	331	Target Neighborhood Hits	331	Shared Neighborhood Hits	200
SwissProt Accessions	Q61658, Q61047	Gene names	Hesx1, Hes-1, Rpx
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (Anterior- restricted homeobox protein) (Rathke pouch homeo box).

NKX28_MOUSE
NC score	0.213988 (rank : 145)	θ value	5.27518 (rank : 273)
Query Neighborhood Hits	331	Target Neighborhood Hits	347	Shared Neighborhood Hits	219
SwissProt Accessions	O70584	Gene names	Nkx2-8, Nkx-2.9, Nkx2-9, Nkx2h
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H) (Homeobox protein Nkx-2.9).

CART1_MOUSE
NC score	0.213646 (rank : 146)	θ value	θ > 10 (rank : 348)
Query Neighborhood Hits	331	Target Neighborhood Hits	344	Shared Neighborhood Hits	211
SwissProt Accessions	Q8C8B0, Q8C370	Gene names	Cart1
Domain Architecture	No domain graphic available
Description	Cartilage homeoprotein 1 (CART-1).

PO6F1_MOUSE
NC score	0.213535 (rank : 147)	θ value	0.0148317 (rank : 44)
Query Neighborhood Hits	331	Target Neighborhood Hits	581	Shared Neighborhood Hits	213
SwissProt Accessions	Q07916, Q91XK3	Gene names	Pou6f1, Emb
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (Octamer-binding transcription factor EMB) (Transcription regulatory protein MCP-1).

VAX1_HUMAN
NC score	0.213427 (rank : 148)	θ value	4.03905 (rank : 259)
Query Neighborhood Hits	331	Target Neighborhood Hits	355	Shared Neighborhood Hits	211
SwissProt Accessions	Q5SQQ9, Q6ZSX0	Gene names	VAX1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

HXA13_HUMAN
NC score	0.213241 (rank : 149)	θ value	0.47712 (rank : 130)
Query Neighborhood Hits	331	Target Neighborhood Hits	353	Shared Neighborhood Hits	213
SwissProt Accessions	P31271, O43371	Gene names	HOXA13, HOX1J
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1J).

VAX1_MOUSE
NC score	0.212999 (rank : 150)	θ value	4.03905 (rank : 260)
Query Neighborhood Hits	331	Target Neighborhood Hits	351	Shared Neighborhood Hits	210
SwissProt Accessions	Q2NKI2, O88880	Gene names	Vax1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

HXA13_MOUSE
NC score	0.212962 (rank : 151)	θ value	0.47712 (rank : 131)
Query Neighborhood Hits	331	Target Neighborhood Hits	351	Shared Neighborhood Hits	213
SwissProt Accessions	Q62424	Gene names	Hoxa13, Hox-1.10
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1.10).

HXB13_HUMAN
NC score	0.212865 (rank : 152)	θ value	0.47712 (rank : 132)
Query Neighborhood Hits	331	Target Neighborhood Hits	377	Shared Neighborhood Hits	219
SwissProt Accessions	Q92826, Q96QM4, Q99810	Gene names	HOXB13
Domain Architecture
Description	Homeobox protein Hox-B13.

LBX1_HUMAN
NC score	0.212832 (rank : 153)	θ value	θ > 10 (rank : 435)
Query Neighborhood Hits	331	Target Neighborhood Hits	357	Shared Neighborhood Hits	215
SwissProt Accessions	P52954	Gene names	LBX1
Domain Architecture
Description	Transcription factor LBX1.

NKX26_MOUSE
NC score	0.212602 (rank : 154)	θ value	0.279714 (rank : 113)
Query Neighborhood Hits	331	Target Neighborhood Hits	343	Shared Neighborhood Hits	202
SwissProt Accessions	P43688	Gene names	Nkx2-6, Nkx-2.6, Nkx2f
Domain Architecture
Description	Homeobox protein Nkx-2.6 (Homeobox protein NK-2 homolog F).

HXB13_MOUSE
NC score	0.212290 (rank : 155)	θ value	0.47712 (rank : 133)
Query Neighborhood Hits	331	Target Neighborhood Hits	384	Shared Neighborhood Hits	216
SwissProt Accessions	P70321, Q80Y12	Gene names	Hoxb13
Domain Architecture
Description	Homeobox protein Hox-B13.

NKX22_HUMAN
NC score	0.211986 (rank : 156)	θ value	1.81305 (rank : 181)
Query Neighborhood Hits	331	Target Neighborhood Hits	342	Shared Neighborhood Hits	211
SwissProt Accessions	O95096	Gene names	NKX2-2, NKX2.2, NKX2B
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

NKX31_MOUSE
NC score	0.211927 (rank : 157)	θ value	0.163984 (rank : 96)
Query Neighborhood Hits	331	Target Neighborhood Hits	379	Shared Neighborhood Hits	202
SwissProt Accessions	P97436, O09087	Gene names	Nkx3-1, Nkx-3.1, Nkx3a
Domain Architecture
Description	Homeobox protein Nkx-3.1.

HHEX_HUMAN
NC score	0.211795 (rank : 158)	θ value	0.125558 (rank : 89)
Query Neighborhood Hits	331	Target Neighborhood Hits	358	Shared Neighborhood Hits	205
SwissProt Accessions	Q03014	Gene names	HHEX, HEX, PRH, PRHX
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

NKX28_HUMAN
NC score	0.211758 (rank : 159)	θ value	θ > 10 (rank : 448)
Query Neighborhood Hits	331	Target Neighborhood Hits	352	Shared Neighborhood Hits	220
SwissProt Accessions	O15522	Gene names	NKX2-8, NKX-2.8, NKX2G, NKX2H
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H).

HMX2_MOUSE
NC score	0.210960 (rank : 160)	θ value	θ > 10 (rank : 376)
Query Neighborhood Hits	331	Target Neighborhood Hits	354	Shared Neighborhood Hits	213
SwissProt Accessions	P43687, Q8R1Q2	Gene names	Hmx2, Nkx-5.2, Nkx5-2
Domain Architecture
Description	Homeobox protein HMX2 (Homeobox protein Nkx-5.2).

NKX31_HUMAN
NC score	0.210837 (rank : 161)	θ value	0.0431538 (rank : 59)
Query Neighborhood Hits	331	Target Neighborhood Hits	331	Shared Neighborhood Hits	200
SwissProt Accessions	Q99801, O15465, Q9H2P4, Q9H2P5, Q9H2P6, Q9H2P7, Q9HBG0	Gene names	NKX3-1, NKX3.1, NKX3A
Domain Architecture
Description	Homeobox protein Nkx-3.1.

VAX2_HUMAN
NC score	0.210591 (rank : 162)	θ value	6.88961 (rank : 303)
Query Neighborhood Hits	331	Target Neighborhood Hits	337	Shared Neighborhood Hits	208
SwissProt Accessions	Q9UIW0	Gene names	VAX2
Domain Architecture
Description	Ventral anterior homeobox 2.

PEPP2_HUMAN
NC score	0.210392 (rank : 163)	θ value	θ > 10 (rank : 457)
Query Neighborhood Hits	331	Target Neighborhood Hits	316	Shared Neighborhood Hits	188
SwissProt Accessions	Q9BQY4, Q9BR00	Gene names	PEPP2, THG1
Domain Architecture
Description	Paired-like homeobox protein PEPP-2 (Testis homeobox gene 1).

VAX2_MOUSE
NC score	0.210364 (rank : 164)	θ value	6.88961 (rank : 304)
Query Neighborhood Hits	331	Target Neighborhood Hits	338	Shared Neighborhood Hits	206
SwissProt Accessions	Q9WTP9	Gene names	Vax2, Vex
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 2 (Ventral retina homeodomain protein).

LBX1_MOUSE
NC score	0.210347 (rank : 165)	θ value	θ > 10 (rank : 436)
Query Neighborhood Hits	331	Target Neighborhood Hits	349	Shared Neighborhood Hits	212
SwissProt Accessions	P52955	Gene names	Lbx1, Lbx1h
Domain Architecture
Description	Transcription factor LBX1.

TITF1_HUMAN
NC score	0.208723 (rank : 166)	θ value	5.27518 (rank : 276)
Query Neighborhood Hits	331	Target Neighborhood Hits	332	Shared Neighborhood Hits	210
SwissProt Accessions	P43699, O14954, O14955, Q9BRJ8	Gene names	TITF1, NKX2-1, NKX2A, TTF1
Domain Architecture
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1) (Homeobox protein NK-2 homolog A).

TITF1_MOUSE
NC score	0.208408 (rank : 167)	θ value	5.27518 (rank : 277)
Query Neighborhood Hits	331	Target Neighborhood Hits	335	Shared Neighborhood Hits	210
SwissProt Accessions	P50220	Gene names	Titf1, Nkx-2.1, Nkx2-1, Ttf1
Domain Architecture	No domain graphic available
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1).

MEOX1_MOUSE
NC score	0.208051 (rank : 168)	θ value	0.47712 (rank : 136)
Query Neighborhood Hits	331	Target Neighborhood Hits	345	Shared Neighborhood Hits	209
SwissProt Accessions	P32442	Gene names	Meox1, Mox-1, Mox1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

NKX24_MOUSE
NC score	0.207752 (rank : 169)	θ value	3.0926 (rank : 227)
Query Neighborhood Hits	331	Target Neighborhood Hits	356	Shared Neighborhood Hits	211
SwissProt Accessions	Q9EQM3, Q9EQM4	Gene names	Nkx2-4, Nkx2d
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

MSX2_MOUSE
NC score	0.207340 (rank : 170)	θ value	0.813845 (rank : 156)
Query Neighborhood Hits	331	Target Neighborhood Hits	345	Shared Neighborhood Hits	205
SwissProt Accessions	Q03358, Q63856	Gene names	Msx2, Hox-8.1, Msx-2
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8.1).

MSX2_HUMAN
NC score	0.207292 (rank : 171)	θ value	0.813845 (rank : 155)
Query Neighborhood Hits	331	Target Neighborhood Hits	337	Shared Neighborhood Hits	206
SwissProt Accessions	P35548	Gene names	MSX2, HOX8
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8).

NKX22_MOUSE
NC score	0.207212 (rank : 172)	θ value	1.81305 (rank : 182)
Query Neighborhood Hits	331	Target Neighborhood Hits	336	Shared Neighborhood Hits	213
SwissProt Accessions	P42586	Gene names	Nkx2-2, Nkx-2.2, Nkx2b
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

MEOX1_HUMAN
NC score	0.207027 (rank : 173)	θ value	0.62314 (rank : 142)
Query Neighborhood Hits	331	Target Neighborhood Hits	342	Shared Neighborhood Hits	204
SwissProt Accessions	P50221	Gene names	MEOX1, MOX1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

BSH_MOUSE
NC score	0.205721 (rank : 174)	θ value	θ > 10 (rank : 346)
Query Neighborhood Hits	331	Target Neighborhood Hits	349	Shared Neighborhood Hits	212
SwissProt Accessions	Q810B3	Gene names	Bsx
Domain Architecture	No domain graphic available
Description	Brain-specific homeobox protein homolog.

NKX24_HUMAN
NC score	0.205634 (rank : 175)	θ value	5.27518 (rank : 272)
Query Neighborhood Hits	331	Target Neighborhood Hits	366	Shared Neighborhood Hits	211
SwissProt Accessions	Q9H2Z4	Gene names	NKX2-4, NKX2D
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

HMX3_MOUSE
NC score	0.203242 (rank : 176)	θ value	θ > 10 (rank : 377)
Query Neighborhood Hits	331	Target Neighborhood Hits	342	Shared Neighborhood Hits	210
SwissProt Accessions	P42581	Gene names	Hmx3, Nkx-5.1, Nkx5-1
Domain Architecture
Description	Homeobox protein HMX3 (Homeobox protein Nkx-5.1).

LMX1B_MOUSE
NC score	0.203044 (rank : 177)	θ value	3.0926 (rank : 223)
Query Neighborhood Hits	331	Target Neighborhood Hits	394	Shared Neighborhood Hits	192
SwissProt Accessions	O88609	Gene names	Lmx1b
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

HXD13_MOUSE
NC score	0.202629 (rank : 178)	θ value	0.813845 (rank : 152)
Query Neighborhood Hits	331	Target Neighborhood Hits	324	Shared Neighborhood Hits	207
SwissProt Accessions	P70217, Q2VPB0, Q2VPB1, Q64177	Gene names	Hoxd13, Hox-4.8
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4.8).

HXD13_HUMAN
NC score	0.202561 (rank : 179)	θ value	0.813845 (rank : 151)
Query Neighborhood Hits	331	Target Neighborhood Hits	332	Shared Neighborhood Hits	207
SwissProt Accessions	P35453	Gene names	HOXD13, HOX4I
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4I).

NKX12_MOUSE
NC score	0.202426 (rank : 180)	θ value	θ > 10 (rank : 447)
Query Neighborhood Hits	331	Target Neighborhood Hits	332	Shared Neighborhood Hits	197
SwissProt Accessions	P42580, Q9JHF2, Q9JKW5, Q9JKW6, Q9JKW9, Q9JKX0, Q9JKX1	Gene names	Nkx1-2, Nkx1.1, Sax1
Domain Architecture
Description	NK1 transcription factor-related protein 2 (Homeobox protein SAX-1) (NKX-1.1).

MSX1_HUMAN
NC score	0.202278 (rank : 181)	θ value	2.36792 (rank : 198)
Query Neighborhood Hits	331	Target Neighborhood Hits	374	Shared Neighborhood Hits	204
SwissProt Accessions	P28360, Q96NY4	Gene names	MSX1, HOX7
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7).

HXD12_HUMAN
NC score	0.202149 (rank : 182)	θ value	3.0926 (rank : 216)
Query Neighborhood Hits	331	Target Neighborhood Hits	334	Shared Neighborhood Hits	201
SwissProt Accessions	P35452, Q9NS03	Gene names	HOXD12, HOX4H
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4H).

MSX1_MOUSE
NC score	0.201135 (rank : 183)	θ value	3.0926 (rank : 225)
Query Neighborhood Hits	331	Target Neighborhood Hits	322	Shared Neighborhood Hits	202
SwissProt Accessions	P13297	Gene names	Msx1, Hox7, Hox7.1
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7) (Hox- 7.1).

LMX1A_MOUSE
NC score	0.201107 (rank : 184)	θ value	3.0926 (rank : 221)
Query Neighborhood Hits	331	Target Neighborhood Hits	405	Shared Neighborhood Hits	195
SwissProt Accessions	Q9JKU8	Gene names	Lmx1a
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

LMX1B_HUMAN
NC score	0.201020 (rank : 185)	θ value	3.0926 (rank : 222)
Query Neighborhood Hits	331	Target Neighborhood Hits	404	Shared Neighborhood Hits	193
SwissProt Accessions	O60663, O75463	Gene names	LMX1B
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

LMX1A_HUMAN
NC score	0.200786 (rank : 186)	θ value	3.0926 (rank : 220)
Query Neighborhood Hits	331	Target Neighborhood Hits	406	Shared Neighborhood Hits	197
SwissProt Accessions	Q8TE12, Q8TE11	Gene names	LMX1A
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

MSX3_MOUSE
NC score	0.200519 (rank : 187)	θ value	8.99809 (rank : 315)
Query Neighborhood Hits	331	Target Neighborhood Hits	330	Shared Neighborhood Hits	203
SwissProt Accessions	P70354, P70246, Q03360, Q80W10	Gene names	Msx3, Msx-3
Domain Architecture
Description	Homeobox protein MSX-3.

HXD12_MOUSE
NC score	0.200249 (rank : 188)	θ value	3.0926 (rank : 217)
Query Neighborhood Hits	331	Target Neighborhood Hits	370	Shared Neighborhood Hits	203
SwissProt Accessions	P23812	Gene names	Hoxd12, Hox-4.7, Hoxd-12
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4.7) (Hox-5.6).

BARH1_HUMAN
NC score	0.199551 (rank : 189)	θ value	θ > 10 (rank : 339)
Query Neighborhood Hits	331	Target Neighborhood Hits	373	Shared Neighborhood Hits	214
SwissProt Accessions	Q9BZE3, Q9NY88	Gene names	BARHL1
Domain Architecture
Description	BarH-like 1 homeobox protein.

PO2F1_HUMAN
NC score	0.199427 (rank : 190)	θ value	0.125558 (rank : 91)
Query Neighborhood Hits	331	Target Neighborhood Hits	426	Shared Neighborhood Hits	202
SwissProt Accessions	P14859, Q5TBT7, Q6PK46, Q8NEU9, Q9BPV1	Gene names	POU2F1, OCT1, OTF1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

EVX1_MOUSE
NC score	0.199365 (rank : 191)	θ value	1.81305 (rank : 175)
Query Neighborhood Hits	331	Target Neighborhood Hits	350	Shared Neighborhood Hits	204
SwissProt Accessions	P23683	Gene names	Evx1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

BARH2_HUMAN
NC score	0.198925 (rank : 192)	θ value	θ > 10 (rank : 341)
Query Neighborhood Hits	331	Target Neighborhood Hits	419	Shared Neighborhood Hits	215
SwissProt Accessions	Q9NY43, Q7Z4N7	Gene names	BARHL2
Domain Architecture
Description	BarH-like 2 homeobox protein.

TLX3_MOUSE
NC score	0.198426 (rank : 193)	θ value	0.279714 (rank : 115)
Query Neighborhood Hits	331	Target Neighborhood Hits	346	Shared Neighborhood Hits	211
SwissProt Accessions	O55144	Gene names	Tlx3, Hox11l2, Rnx, Tlx1l2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox TLX-3) (Homeobox protein Hox-11L2) (Respiratory neuron homeobox protein).

BARH2_MOUSE
NC score	0.197603 (rank : 194)	θ value	θ > 10 (rank : 342)
Query Neighborhood Hits	331	Target Neighborhood Hits	397	Shared Neighborhood Hits	213
SwissProt Accessions	Q8VIB5, Q66L43	Gene names	Barhl2, Barh1, Mbh1
Domain Architecture	No domain graphic available
Description	BarH-like 2 homeobox protein (Bar-class homeodomain protein MBH1) (Homeobox protein B-H1).

PO6F2_MOUSE
NC score	0.196977 (rank : 195)	θ value	θ > 10 (rank : 467)
Query Neighborhood Hits	331	Target Neighborhood Hits	639	Shared Neighborhood Hits	211
SwissProt Accessions	Q8BJI4	Gene names	Pou6f2
Domain Architecture	No domain graphic available
Description	POU domain, class 6, transcription factor 2.

TLX1_HUMAN
NC score	0.196791 (rank : 196)	θ value	3.0926 (rank : 240)
Query Neighborhood Hits	331	Target Neighborhood Hits	347	Shared Neighborhood Hits	209
SwissProt Accessions	P31314, O75699, Q9HCA0	Gene names	TLX1, HOX11, TCL3
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (TCL-3 proto-oncogene).

TLX2_HUMAN
NC score	0.196168 (rank : 197)	θ value	θ > 10 (rank : 481)
Query Neighborhood Hits	331	Target Neighborhood Hits	352	Shared Neighborhood Hits	206
SwissProt Accessions	O43763, Q9UQ48	Gene names	TLX2, HOX11L1, NCX
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Neural crest homeobox protein).

TLX2_MOUSE
NC score	0.196125 (rank : 198)	θ value	θ > 10 (rank : 482)
Query Neighborhood Hits	331	Target Neighborhood Hits	336	Shared Neighborhood Hits	205
SwissProt Accessions	Q61663	Gene names	Tlx2, Hox11l1, Tlx1l1
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Homeobox TLX-2) (PMUR10F).

PO6F2_HUMAN
NC score	0.195888 (rank : 199)	θ value	θ > 10 (rank : 466)
Query Neighborhood Hits	331	Target Neighborhood Hits	618	Shared Neighborhood Hits	204
SwissProt Accessions	P78424, P78425, Q75ME8, Q86UM6, Q9UDS7	Gene names	POU6F2, RPF1
Domain Architecture
Description	POU domain, class 6, transcription factor 2 (Retina-derived POU-domain factor 1) (RPF-1).

BARX2_HUMAN
NC score	0.195787 (rank : 200)	θ value	3.0926 (rank : 210)
Query Neighborhood Hits	331	Target Neighborhood Hits	387	Shared Neighborhood Hits	210
SwissProt Accessions	Q9UMQ3, O43518	Gene names	BARX2
Domain Architecture
Description	Homeobox protein BarH-like 2.

EVX1_HUMAN
NC score	0.195378 (rank : 201)	θ value	1.81305 (rank : 174)
Query Neighborhood Hits	331	Target Neighborhood Hits	349	Shared Neighborhood Hits	202
SwissProt Accessions	P49640	Gene names	EVX1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

EVX2_MOUSE
NC score	0.195345 (rank : 202)	θ value	1.81305 (rank : 177)
Query Neighborhood Hits	331	Target Neighborhood Hits	327	Shared Neighborhood Hits	201
SwissProt Accessions	P49749	Gene names	Evx2, Evx-2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

TLX1_MOUSE
NC score	0.194797 (rank : 203)	θ value	2.36792 (rank : 206)
Query Neighborhood Hits	331	Target Neighborhood Hits	347	Shared Neighborhood Hits	207
SwissProt Accessions	P43345	Gene names	Tlx1, Hox11, Tlx-1
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (Homeobox TLX-1).

BARX2_MOUSE
NC score	0.193835 (rank : 204)	θ value	θ > 10 (rank : 345)
Query Neighborhood Hits	331	Target Neighborhood Hits	335	Shared Neighborhood Hits	204
SwissProt Accessions	O08686	Gene names	Barx2
Domain Architecture
Description	Homeobox protein BarH-like 2.

EVX2_HUMAN
NC score	0.192875 (rank : 205)	θ value	1.81305 (rank : 176)
Query Neighborhood Hits	331	Target Neighborhood Hits	325	Shared Neighborhood Hits	198
SwissProt Accessions	Q03828	Gene names	EVX2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

BARH1_MOUSE
NC score	0.192510 (rank : 206)	θ value	θ > 10 (rank : 340)
Query Neighborhood Hits	331	Target Neighborhood Hits	350	Shared Neighborhood Hits	212
SwissProt Accessions	P63157, Q9JK26	Gene names	Barhl1, Bhx1, Mbh2
Domain Architecture	No domain graphic available
Description	BarH-like 1 homeobox protein (Bar-class homeodomain protein MBH2) (BarH-related homeobox protein 1).

HLX1_MOUSE
NC score	0.190472 (rank : 207)	θ value	θ > 10 (rank : 371)
Query Neighborhood Hits	331	Target Neighborhood Hits	362	Shared Neighborhood Hits	203
SwissProt Accessions	Q61670	Gene names	Hlx1, Hlx
Domain Architecture
Description	Homeobox protein HLX1.

HLX1_HUMAN
NC score	0.189696 (rank : 208)	θ value	θ > 10 (rank : 370)
Query Neighborhood Hits	331	Target Neighborhood Hits	370	Shared Neighborhood Hits	205
SwissProt Accessions	Q14774, Q15988	Gene names	HLX1
Domain Architecture
Description	Homeobox protein HLX1 (Homeobox protein HB24).

TLX3_HUMAN
NC score	0.188586 (rank : 209)	θ value	2.36792 (rank : 207)
Query Neighborhood Hits	331	Target Neighborhood Hits	403	Shared Neighborhood Hits	210
SwissProt Accessions	O43711, Q96AD3	Gene names	TLX3, HOX11L2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox protein Hox-11L2).

DUX2_HUMAN
NC score	0.188261 (rank : 210)	θ value	θ > 10 (rank : 359)
Query Neighborhood Hits	331	Target Neighborhood Hits	173	Shared Neighborhood Hits	112
SwissProt Accessions	O75505	Gene names	DUX2
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 2.

MEOX2_MOUSE
NC score	0.188128 (rank : 211)	θ value	θ > 10 (rank : 446)
Query Neighborhood Hits	331	Target Neighborhood Hits	341	Shared Neighborhood Hits	206
SwissProt Accessions	P32443, Q544T6	Gene names	Meox2, Gax, Mox-2, Mox2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2).

MEOX2_HUMAN
NC score	0.188030 (rank : 212)	θ value	θ > 10 (rank : 445)
Query Neighborhood Hits	331	Target Neighborhood Hits	340	Shared Neighborhood Hits	205
SwissProt Accessions	P50222, O75263, Q9UPL6	Gene names	MEOX2, GAX, MOX2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth arrest-specific homeobox).

HXA1_MOUSE
NC score	0.187530 (rank : 213)	θ value	2.36792 (rank : 196)
Query Neighborhood Hits	331	Target Neighborhood Hits	341	Shared Neighborhood Hits	210
SwissProt Accessions	P09022, P15463	Gene names	Hoxa1, Era-1, Hox-1.6, Hoxa-1
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399).

NKX32_MOUSE
NC score	0.187352 (rank : 214)	θ value	θ > 10 (rank : 450)
Query Neighborhood Hits	331	Target Neighborhood Hits	326	Shared Neighborhood Hits	204
SwissProt Accessions	P97503	Gene names	Bapx1, Nkx-3.2, Nkx3-2, Nkx3b
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

PBX4_MOUSE
NC score	0.186935 (rank : 215)	θ value	0.813845 (rank : 157)
Query Neighborhood Hits	331	Target Neighborhood Hits	324	Shared Neighborhood Hits	182
SwissProt Accessions	Q99NE9, Q8CFL2, Q99NE8	Gene names	Pbx4
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 4 (Homeobox protein PBX4).

HXA1_HUMAN
NC score	0.185920 (rank : 216)	θ value	2.36792 (rank : 195)
Query Neighborhood Hits	331	Target Neighborhood Hits	334	Shared Neighborhood Hits	208
SwissProt Accessions	P49639, O43363	Gene names	HOXA1, HOX1F
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1F).

BARX1_HUMAN
NC score	0.185016 (rank : 217)	θ value	θ > 10 (rank : 343)
Query Neighborhood Hits	331	Target Neighborhood Hits	326	Shared Neighborhood Hits	197
SwissProt Accessions	Q9HBU1	Gene names	BARX1
Domain Architecture
Description	Homeobox protein BarH-like 1.

NKX32_HUMAN
NC score	0.184538 (rank : 218)	θ value	θ > 10 (rank : 449)
Query Neighborhood Hits	331	Target Neighborhood Hits	323	Shared Neighborhood Hits	203
SwissProt Accessions	P78367	Gene names	BAPX1, NKX3B
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

HXD3_MOUSE
NC score	0.184509 (rank : 219)	θ value	0.163984 (rank : 95)
Query Neighborhood Hits	331	Target Neighborhood Hits	435	Shared Neighborhood Hits	208
SwissProt Accessions	P09027, Q3UUD3	Gene names	Hoxd3, Hox-4.1, Hoxd-3
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4.1) (Homeobox protein MH-19).

CDX4_HUMAN
NC score	0.184293 (rank : 220)	θ value	2.36792 (rank : 189)
Query Neighborhood Hits	331	Target Neighborhood Hits	366	Shared Neighborhood Hits	211
SwissProt Accessions	O14627, Q5JS20	Gene names	CDX4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

BARX1_MOUSE
NC score	0.183912 (rank : 221)	θ value	θ > 10 (rank : 344)
Query Neighborhood Hits	331	Target Neighborhood Hits	324	Shared Neighborhood Hits	197
SwissProt Accessions	Q9ER42, O09066, P70159, Q9ERV2	Gene names	Barx1
Domain Architecture
Description	Homeobox protein BarH-like 1.

HLXB9_MOUSE
NC score	0.183822 (rank : 222)	θ value	θ > 10 (rank : 373)
Query Neighborhood Hits	331	Target Neighborhood Hits	354	Shared Neighborhood Hits	213
SwissProt Accessions	Q9QZW9	Gene names	Hlxb9
Domain Architecture
Description	Homeobox protein HB9.

HLXB9_HUMAN
NC score	0.183725 (rank : 223)	θ value	θ > 10 (rank : 372)
Query Neighborhood Hits	331	Target Neighborhood Hits	336	Shared Neighborhood Hits	210
SwissProt Accessions	P50219, Q9Y648	Gene names	HLXB9
Domain Architecture
Description	Homeobox protein HB9.

GBX2_HUMAN
NC score	0.182994 (rank : 224)	θ value	θ > 10 (rank : 363)
Query Neighborhood Hits	331	Target Neighborhood Hits	322	Shared Neighborhood Hits	189
SwissProt Accessions	P52951, O43833, Q53RX5, Q9Y5Y1	Gene names	GBX2
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2).

GBX2_MOUSE
NC score	0.182834 (rank : 225)	θ value	θ > 10 (rank : 364)
Query Neighborhood Hits	331	Target Neighborhood Hits	326	Shared Neighborhood Hits	190
SwissProt Accessions	P48031	Gene names	Gbx2, Mmoxa, Stra7
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2) (Homeobox protein STRA7).

HXB1_MOUSE
NC score	0.181913 (rank : 226)	θ value	4.03905 (rank : 248)
Query Neighborhood Hits	331	Target Neighborhood Hits	341	Shared Neighborhood Hits	210
SwissProt Accessions	P17919, Q3ZAY6, Q9CYH3	Gene names	Hoxb1, Hox-2.9, Hoxb-1
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2.9).

HXB1_HUMAN
NC score	0.181833 (rank : 227)	θ value	4.03905 (rank : 247)
Query Neighborhood Hits	331	Target Neighborhood Hits	356	Shared Neighborhood Hits	212
SwissProt Accessions	P14653	Gene names	HOXB1, HOX2I
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2I).

HXD3_HUMAN
NC score	0.181354 (rank : 228)	θ value	0.62314 (rank : 141)
Query Neighborhood Hits	331	Target Neighborhood Hits	433	Shared Neighborhood Hits	210
SwissProt Accessions	P31249, Q99955, Q9BSC5	Gene names	HOXD3, HOX4A
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4A).

PBX2_HUMAN
NC score	0.180168 (rank : 229)	θ value	3.0926 (rank : 229)
Query Neighborhood Hits	331	Target Neighborhood Hits	350	Shared Neighborhood Hits	191
SwissProt Accessions	P40425	Gene names	PBX2, G17
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2) (Protein G17).

PBX2_MOUSE
NC score	0.180138 (rank : 230)	θ value	3.0926 (rank : 230)
Query Neighborhood Hits	331	Target Neighborhood Hits	341	Shared Neighborhood Hits	191
SwissProt Accessions	O35984	Gene names	Pbx2
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2).

GBX1_HUMAN
NC score	0.179592 (rank : 231)	θ value	θ > 10 (rank : 361)
Query Neighborhood Hits	331	Target Neighborhood Hits	334	Shared Neighborhood Hits	186
SwissProt Accessions	Q14549	Gene names	GBX1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

CDX4_MOUSE
NC score	0.179170 (rank : 232)	θ value	θ > 10 (rank : 353)
Query Neighborhood Hits	331	Target Neighborhood Hits	378	Shared Neighborhood Hits	205
SwissProt Accessions	Q07424	Gene names	Cdx4, Cdx-4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

HXB2_HUMAN
NC score	0.178374 (rank : 233)	θ value	θ > 10 (rank : 399)
Query Neighborhood Hits	331	Target Neighborhood Hits	367	Shared Neighborhood Hits	204
SwissProt Accessions	P14652, P10913, P17485	Gene names	HOXB2, HOX2H
Domain Architecture
Description	Homeobox protein Hox-B2 (Hox-2H) (Hox-2.8) (K8).

GBX1_MOUSE
NC score	0.178332 (rank : 234)	θ value	θ > 10 (rank : 362)
Query Neighborhood Hits	331	Target Neighborhood Hits	350	Shared Neighborhood Hits	186
SwissProt Accessions	P82976, Q8CGW5	Gene names	Gbx1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

HXC12_HUMAN
NC score	0.178046 (rank : 235)	θ value	1.81305 (rank : 178)
Query Neighborhood Hits	331	Target Neighborhood Hits	313	Shared Neighborhood Hits	194
SwissProt Accessions	P31275, Q9BXJ6	Gene names	HOXC12, HOX3F
Domain Architecture
Description	Homeobox protein Hox-C12 (Hox-3F).

GSH2_HUMAN
NC score	0.177526 (rank : 236)	θ value	6.88961 (rank : 287)
Query Neighborhood Hits	331	Target Neighborhood Hits	324	Shared Neighborhood Hits	201
SwissProt Accessions	Q9BZM3	Gene names	GSH2
Domain Architecture
Description	Homeobox protein GSH-2.

CDX1_HUMAN
NC score	0.176669 (rank : 237)	θ value	θ > 10 (rank : 349)
Query Neighborhood Hits	331	Target Neighborhood Hits	382	Shared Neighborhood Hits	198
SwissProt Accessions	P47902, Q4VAU4, Q9NYK8	Gene names	CDX1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

HXC12_MOUSE
NC score	0.176430 (rank : 238)	θ value	1.81305 (rank : 179)
Query Neighborhood Hits	331	Target Neighborhood Hits	316	Shared Neighborhood Hits	195
SwissProt Accessions	Q8K5B8	Gene names	Hoxc12, Hox-3.8, Hoxc-12
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C12 (Hox-3.8).

GSH2_MOUSE
NC score	0.175403 (rank : 239)	θ value	θ > 10 (rank : 365)
Query Neighborhood Hits	331	Target Neighborhood Hits	319	Shared Neighborhood Hits	200
SwissProt Accessions	P31316	Gene names	Gsh2, Gsh-2
Domain Architecture
Description	Homeobox protein GSH-2.

PO2F3_MOUSE
NC score	0.175262 (rank : 240)	θ value	0.365318 (rank : 124)
Query Neighborhood Hits	331	Target Neighborhood Hits	328	Shared Neighborhood Hits	185
SwissProt Accessions	P31362	Gene names	Pou2f3, Epoc1, Oct11, Otf-11, Otf11
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Epoc-1).

HXA3_HUMAN
NC score	0.174830 (rank : 241)	θ value	0.62314 (rank : 140)
Query Neighborhood Hits	331	Target Neighborhood Hits	535	Shared Neighborhood Hits	220
SwissProt Accessions	O43365	Gene names	HOXA3, HOX1E
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1E).

HXA3_MOUSE
NC score	0.174406 (rank : 242)	θ value	θ > 10 (rank : 388)
Query Neighborhood Hits	331	Target Neighborhood Hits	558	Shared Neighborhood Hits	221
SwissProt Accessions	P02831, Q4V9Z8, Q61197	Gene names	Hoxa3, Hox-1.5, Hoxa-3
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1.5) (MO-10).

PO2F1_MOUSE
NC score	0.174293 (rank : 243)	θ value	0.365318 (rank : 122)
Query Neighborhood Hits	331	Target Neighborhood Hits	408	Shared Neighborhood Hits	190
SwissProt Accessions	P25425, Q61994, Q63891, Q6Y681, Q7TSD0, Q8BT04, Q8K570, Q99JH0, Q9WTZ4, Q9WTZ5, Q9WTZ6	Gene names	Pou2f1, Oct-1, Otf-1, Otf1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

CDX1_MOUSE
NC score	0.173488 (rank : 244)	θ value	θ > 10 (rank : 350)
Query Neighborhood Hits	331	Target Neighborhood Hits	379	Shared Neighborhood Hits	195
SwissProt Accessions	P18111, Q8VCF7	Gene names	Cdx1, Cdx-1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

HXD1_MOUSE
NC score	0.173374 (rank : 245)	θ value	5.27518 (rank : 269)
Query Neighborhood Hits	331	Target Neighborhood Hits	381	Shared Neighborhood Hits	208
SwissProt Accessions	Q01822	Gene names	Hoxd1, Hox-4.9, Hoxd-1
Domain Architecture
Description	Homeobox protein Hox-D1 (Hox-4.9).

PO2F3_HUMAN
NC score	0.173203 (rank : 246)	θ value	0.365318 (rank : 123)
Query Neighborhood Hits	331	Target Neighborhood Hits	319	Shared Neighborhood Hits	183
SwissProt Accessions	Q9UKI9, Q9UKR7, Q9Y504	Gene names	POU2F3, OTF11, PLA1
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Transcription factor Skn-1) (PLA-1 protein).

GSHI_MOUSE
NC score	0.172793 (rank : 247)	θ value	θ > 10 (rank : 367)
Query Neighborhood Hits	331	Target Neighborhood Hits	313	Shared Neighborhood Hits	199
SwissProt Accessions	P31315	Gene names	Gsh1, Gsh-1
Domain Architecture
Description	Homeobox protein GSH-1.

GSHI_HUMAN
NC score	0.171337 (rank : 248)	θ value	θ > 10 (rank : 366)
Query Neighborhood Hits	331	Target Neighborhood Hits	314	Shared Neighborhood Hits	200
SwissProt Accessions	Q9H4S2	Gene names	GSH1
Domain Architecture
Description	Homeobox protein GSH-1.

IPF1_MOUSE
NC score	0.170932 (rank : 249)	θ value	θ > 10 (rank : 434)
Query Neighborhood Hits	331	Target Neighborhood Hits	340	Shared Neighborhood Hits	204
SwissProt Accessions	P52946	Gene names	Ipf1, Pdx1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Islet/duodenum homeobox 1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Pancreas/duodenum homeobox 1).

CDX2_MOUSE
NC score	0.169881 (rank : 250)	θ value	θ > 10 (rank : 352)
Query Neighborhood Hits	331	Target Neighborhood Hits	336	Shared Neighborhood Hits	195
SwissProt Accessions	P43241	Gene names	Cdx2, Cdx-2
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2).

HXD1_HUMAN
NC score	0.169716 (rank : 251)	θ value	6.88961 (rank : 291)
Query Neighborhood Hits	331	Target Neighborhood Hits	337	Shared Neighborhood Hits	206
SwissProt Accessions	Q9GZZ0	Gene names	HOXD1
Domain Architecture
Description	Homeobox protein Hox-D1.

IPF1_HUMAN
NC score	0.169471 (rank : 252)	θ value	θ > 10 (rank : 433)
Query Neighborhood Hits	331	Target Neighborhood Hits	330	Shared Neighborhood Hits	201
SwissProt Accessions	P52945, O60594	Gene names	IPF1, PDX1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Pancreas/duodenum homeobox 1) (PDX- 1) (Islet/duodenum homeobox-1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Insulin upstream factor 1) (IUF-1) (Glucose- sensitive factor) (GSF).

HXD11_HUMAN
NC score	0.168570 (rank : 253)	θ value	θ > 10 (rank : 427)
Query Neighborhood Hits	331	Target Neighborhood Hits	353	Shared Neighborhood Hits	207
SwissProt Accessions	P31277, Q9NS02	Gene names	HOXD11, HOX4F
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4F).

HXC11_HUMAN
NC score	0.168512 (rank : 254)	θ value	3.0926 (rank : 213)
Query Neighborhood Hits	331	Target Neighborhood Hits	349	Shared Neighborhood Hits	206
SwissProt Accessions	O43248, Q96DH2	Gene names	HOXC11
Domain Architecture
Description	Homeobox protein Hox-C11.

PBX1_HUMAN
NC score	0.168489 (rank : 255)	θ value	4.03905 (rank : 253)
Query Neighborhood Hits	331	Target Neighborhood Hits	317	Shared Neighborhood Hits	181
SwissProt Accessions	P40424	Gene names	PBX1, PRL
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1) (Homeobox protein PRL).

PBX1_MOUSE
NC score	0.168489 (rank : 256)	θ value	4.03905 (rank : 254)
Query Neighborhood Hits	331	Target Neighborhood Hits	317	Shared Neighborhood Hits	181
SwissProt Accessions	P41778	Gene names	Pbx1, Pbx-1
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1).

HXD11_MOUSE
NC score	0.168454 (rank : 257)	θ value	θ > 10 (rank : 428)
Query Neighborhood Hits	331	Target Neighborhood Hits	376	Shared Neighborhood Hits	208
SwissProt Accessions	P23813	Gene names	Hoxd11, Hox-4.6, Hoxd-11
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5).

PBX3_MOUSE
NC score	0.167915 (rank : 258)	θ value	2.36792 (rank : 201)
Query Neighborhood Hits	331	Target Neighborhood Hits	306	Shared Neighborhood Hits	186
SwissProt Accessions	O35317, Q925W2	Gene names	Pbx3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX3_HUMAN
NC score	0.167899 (rank : 259)	θ value	2.36792 (rank : 200)
Query Neighborhood Hits	331	Target Neighborhood Hits	306	Shared Neighborhood Hits	186
SwissProt Accessions	P40426, Q96PF9, Q96PG0	Gene names	PBX3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

HXB3_MOUSE
NC score	0.167596 (rank : 260)	θ value	θ > 10 (rank : 402)
Query Neighborhood Hits	331	Target Neighborhood Hits	493	Shared Neighborhood Hits	207
SwissProt Accessions	P09026, P10285, Q4PJ06, Q61680	Gene names	Hoxb3, Hox-2.7, Hoxb-3
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2.7) (Homeobox protein MH-23).

HXC4_MOUSE
NC score	0.167333 (rank : 261)	θ value	3.0926 (rank : 215)
Query Neighborhood Hits	331	Target Neighborhood Hits	365	Shared Neighborhood Hits	206
SwissProt Accessions	Q08624	Gene names	Hoxc4, Hox-3.5, Hoxc-4
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3.5).

PIT1_MOUSE
NC score	0.166679 (rank : 262)	θ value	4.03905 (rank : 255)
Query Neighborhood Hits	331	Target Neighborhood Hits	313	Shared Neighborhood Hits	194
SwissProt Accessions	Q00286	Gene names	Pou1f1, Pit-1, Pit1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

HXB3_HUMAN
NC score	0.166214 (rank : 263)	θ value	θ > 10 (rank : 401)
Query Neighborhood Hits	331	Target Neighborhood Hits	559	Shared Neighborhood Hits	211
SwissProt Accessions	P14651, O95615, P17484	Gene names	HOXB3, HOX2G
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7).

CDX2_HUMAN
NC score	0.165778 (rank : 264)	θ value	θ > 10 (rank : 351)
Query Neighborhood Hits	331	Target Neighborhood Hits	330	Shared Neighborhood Hits	194
SwissProt Accessions	Q99626, O00503, Q969L8	Gene names	CDX2, CDX3
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2) (CDX-3).

HXB2_MOUSE
NC score	0.165383 (rank : 265)	θ value	θ > 10 (rank : 400)
Query Neighborhood Hits	331	Target Neighborhood Hits	350	Shared Neighborhood Hits	196
SwissProt Accessions	P0C1T1	Gene names	Hoxb2, Hox-2.8
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-B2 (Hox-2.8).

PIT1_HUMAN
NC score	0.163824 (rank : 266)	θ value	6.88961 (rank : 294)
Query Neighborhood Hits	331	Target Neighborhood Hits	292	Shared Neighborhood Hits	184
SwissProt Accessions	P28069, O75757, Q15132, Q15133, Q9UEL3	Gene names	POU1F1, GHF1, PIT1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

HXC4_HUMAN
NC score	0.162941 (rank : 267)	θ value	3.0926 (rank : 214)
Query Neighborhood Hits	331	Target Neighborhood Hits	361	Shared Neighborhood Hits	207
SwissProt Accessions	P09017	Gene names	HOXC4, HOX3E
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3E) (CP19).

HXD8_MOUSE
NC score	0.162744 (rank : 268)	θ value	1.38821 (rank : 170)
Query Neighborhood Hits	331	Target Neighborhood Hits	333	Shared Neighborhood Hits	203
SwissProt Accessions	P23463	Gene names	Hoxd8, Hox-4.3, Hoxd-8
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4).

HXA2_MOUSE
NC score	0.162115 (rank : 269)	θ value	θ > 10 (rank : 387)
Query Neighborhood Hits	331	Target Neighborhood Hits	338	Shared Neighborhood Hits	198
SwissProt Accessions	P31245, Q149U3, Q920T8	Gene names	Hoxa2, Hox-1.11, Hoxa-2
Domain Architecture
Description	Homeobox protein Hox-A2 (Hox-1.11) (Hox1.11).

HXA2_HUMAN
NC score	0.161410 (rank : 270)	θ value	θ > 10 (rank : 386)
Query Neighborhood Hits	331	Target Neighborhood Hits	370	Shared Neighborhood Hits	198
SwissProt Accessions	O43364	Gene names	HOXA2
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A2.

PO3F3_HUMAN
NC score	0.160678 (rank : 271)	θ value	0.00869519 (rank : 37)
Query Neighborhood Hits	331	Target Neighborhood Hits	311	Shared Neighborhood Hits	190
SwissProt Accessions	P20264, P78379	Gene names	POU3F3, BRN1, OTF8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

PO3F3_MOUSE
NC score	0.160637 (rank : 272)	θ value	0.00869519 (rank : 38)
Query Neighborhood Hits	331	Target Neighborhood Hits	308	Shared Neighborhood Hits	190
SwissProt Accessions	P31361	Gene names	Pou3f3, Brn-1, Brn1, Otf8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

HXA11_HUMAN
NC score	0.160619 (rank : 273)	θ value	θ > 10 (rank : 384)
Query Neighborhood Hits	331	Target Neighborhood Hits	334	Shared Neighborhood Hits	195
SwissProt Accessions	P31270	Gene names	HOXA11, HOX1I
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1I).

PO2F2_MOUSE
NC score	0.160303 (rank : 274)	θ value	1.06291 (rank : 167)
Query Neighborhood Hits	331	Target Neighborhood Hits	353	Shared Neighborhood Hits	186
SwissProt Accessions	Q00196, Q00197, Q00198, Q00199, Q00200, Q00201, Q05882, Q61995, Q61996, Q64245	Gene names	Pou2f2, Oct2, Otf2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

HXA11_MOUSE
NC score	0.159537 (rank : 275)	θ value	θ > 10 (rank : 385)
Query Neighborhood Hits	331	Target Neighborhood Hits	327	Shared Neighborhood Hits	195
SwissProt Accessions	P31311, Q3V026	Gene names	Hoxa11, Hox-1.9, Hoxa-11
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1.9).

HXB4_HUMAN
NC score	0.158707 (rank : 276)	θ value	θ > 10 (rank : 403)
Query Neighborhood Hits	331	Target Neighborhood Hits	376	Shared Neighborhood Hits	208
SwissProt Accessions	P17483, Q9NTA0	Gene names	HOXB4, HOX2F
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2F) (Hox-2.6).

PO2F2_HUMAN
NC score	0.158680 (rank : 277)	θ value	1.06291 (rank : 166)
Query Neighborhood Hits	331	Target Neighborhood Hits	379	Shared Neighborhood Hits	189
SwissProt Accessions	P09086, Q16648, Q9BRS4	Gene names	POU2F2, OCT2, OTF2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

HXD8_HUMAN
NC score	0.158540 (rank : 278)	θ value	5.27518 (rank : 270)
Query Neighborhood Hits	331	Target Neighborhood Hits	338	Shared Neighborhood Hits	205
SwissProt Accessions	P13378	Gene names	HOXD8, HOX4E
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4).

HXD4_HUMAN
NC score	0.158294 (rank : 279)	θ value	θ > 10 (rank : 429)
Query Neighborhood Hits	331	Target Neighborhood Hits	337	Shared Neighborhood Hits	195
SwissProt Accessions	P09016, Q96AU0	Gene names	HOXD4, HOX4B
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4B) (Hox-5.1) (HHO.C13).

HXB4_MOUSE
NC score	0.157819 (rank : 280)	θ value	θ > 10 (rank : 404)
Query Neighborhood Hits	331	Target Neighborhood Hits	375	Shared Neighborhood Hits	205
SwissProt Accessions	P10284, Q3UZB4, Q4VBG0	Gene names	Hoxb4, Hox-2.6, Hoxb-4
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2.6).

HXA4_HUMAN
NC score	0.157534 (rank : 281)	θ value	θ > 10 (rank : 389)
Query Neighborhood Hits	331	Target Neighborhood Hits	370	Shared Neighborhood Hits	202
SwissProt Accessions	Q00056, O43366	Gene names	HOXA4, HOX1D
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4).

HXA4_MOUSE
NC score	0.157140 (rank : 282)	θ value	θ > 10 (rank : 390)
Query Neighborhood Hits	331	Target Neighborhood Hits	379	Shared Neighborhood Hits	203
SwissProt Accessions	P06798, Q61684, Q64388, Q8BPE6	Gene names	Hoxa4, Hox-1.4, Hoxa-4
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1.4) (Homeobox protein MH-3).

HXB8_MOUSE
NC score	0.156691 (rank : 283)	θ value	θ > 10 (rank : 412)
Query Neighborhood Hits	331	Target Neighborhood Hits	325	Shared Neighborhood Hits	205
SwissProt Accessions	P09632	Gene names	Hoxb8, Hox-2.4, Hoxb-8
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2.4).

HXB8_HUMAN
NC score	0.156654 (rank : 284)	θ value	θ > 10 (rank : 411)
Query Neighborhood Hits	331	Target Neighborhood Hits	324	Shared Neighborhood Hits	204
SwissProt Accessions	P17481, Q9H1I2	Gene names	HOXB8, HOX2D
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4).

HXC8_MOUSE
NC score	0.155762 (rank : 285)	θ value	θ > 10 (rank : 422)
Query Neighborhood Hits	331	Target Neighborhood Hits	327	Shared Neighborhood Hits	203
SwissProt Accessions	P09025	Gene names	Hoxc8, Hox-3.1, Hoxc-8
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3.1) (M31).

HXC8_HUMAN
NC score	0.155756 (rank : 286)	θ value	θ > 10 (rank : 421)
Query Neighborhood Hits	331	Target Neighborhood Hits	327	Shared Neighborhood Hits	203
SwissProt Accessions	P31273, O15221, O15362	Gene names	HOXC8, HOX3A
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3A).

HXD4_MOUSE
NC score	0.153603 (rank : 287)	θ value	θ > 10 (rank : 430)
Query Neighborhood Hits	331	Target Neighborhood Hits	339	Shared Neighborhood Hits	193
SwissProt Accessions	P10628, P97451, Q3UXL6	Gene names	Hoxd4, Hox-4.2, Hoxd-4
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4.2) (Hox-5.1).

HXB7_MOUSE
NC score	0.152620 (rank : 288)	θ value	θ > 10 (rank : 410)
Query Neighborhood Hits	331	Target Neighborhood Hits	314	Shared Neighborhood Hits	198
SwissProt Accessions	P09024, Q3UW15	Gene names	Hoxb7, Hox-2.3, Hoxb-7
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2.3) (MUB1) (Homeobox protein MH-22B).

HXA7_MOUSE
NC score	0.152328 (rank : 289)	θ value	θ > 10 (rank : 396)
Query Neighborhood Hits	331	Target Neighborhood Hits	318	Shared Neighborhood Hits	198
SwissProt Accessions	P02830, Q544P0	Gene names	Hoxa7, Hox-1.1, Hoxa-7
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1.1) (M6-12) (M6).

PO4F1_MOUSE
NC score	0.151540 (rank : 290)	θ value	2.36792 (rank : 205)
Query Neighborhood Hits	331	Target Neighborhood Hits	345	Shared Neighborhood Hits	188
SwissProt Accessions	P17208	Gene names	Pou4f1, Brn-3, Brn3, Brn3a
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Brn-3.0).

HXB7_HUMAN
NC score	0.151093 (rank : 291)	θ value	θ > 10 (rank : 409)
Query Neighborhood Hits	331	Target Neighborhood Hits	311	Shared Neighborhood Hits	198
SwissProt Accessions	P09629, Q15957	Gene names	HOXB7, HOX2C
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2C) (HHO.C1).

PO4F1_HUMAN
NC score	0.150554 (rank : 292)	θ value	2.36792 (rank : 204)
Query Neighborhood Hits	331	Target Neighborhood Hits	342	Shared Neighborhood Hits	188
SwissProt Accessions	Q01851, Q14986, Q15318	Gene names	POU4F1, BRN3A, RDC1
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Oct-T1) (Homeobox/POU domain protein RDC-1).

PO3F2_MOUSE
NC score	0.148806 (rank : 293)	θ value	3.0926 (rank : 234)
Query Neighborhood Hits	331	Target Neighborhood Hits	313	Shared Neighborhood Hits	190
SwissProt Accessions	P31360	Gene names	Pou3f2, Brn-2, Brn2, Otf7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

PO4F2_MOUSE
NC score	0.148769 (rank : 294)	θ value	3.0926 (rank : 236)
Query Neighborhood Hits	331	Target Neighborhood Hits	312	Shared Neighborhood Hits	183
SwissProt Accessions	Q63934, Q63954	Gene names	Pou4f2, Brn3b
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B) (Brn-3.2).

PO3F2_HUMAN
NC score	0.148745 (rank : 295)	θ value	3.0926 (rank : 233)
Query Neighborhood Hits	331	Target Neighborhood Hits	308	Shared Neighborhood Hits	189
SwissProt Accessions	P20265, Q14960, Q86V54, Q9UJL0	Gene names	POU3F2, BRN2, OCT7, OTF7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

PO4F2_HUMAN
NC score	0.148715 (rank : 296)	θ value	3.0926 (rank : 235)
Query Neighborhood Hits	331	Target Neighborhood Hits	310	Shared Neighborhood Hits	183
SwissProt Accessions	Q12837, Q13883, Q14987	Gene names	POU4F2, BRN3B
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B).

PO3F1_MOUSE
NC score	0.147924 (rank : 297)	θ value	6.88961 (rank : 298)
Query Neighborhood Hits	331	Target Neighborhood Hits	261	Shared Neighborhood Hits	171
SwissProt Accessions	P21952	Gene names	Pou3f1, Oct6, Otf-6, Otf6, Scip
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

HXA7_HUMAN
NC score	0.147803 (rank : 298)	θ value	θ > 10 (rank : 395)
Query Neighborhood Hits	331	Target Neighborhood Hits	309	Shared Neighborhood Hits	196
SwissProt Accessions	P31268, O43368, O43486, O95655, Q9NSC8, Q9UDM1	Gene names	HOXA7, HOX1A
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1).

HXC5_HUMAN
NC score	0.147747 (rank : 299)	θ value	θ > 10 (rank : 417)
Query Neighborhood Hits	331	Target Neighborhood Hits	316	Shared Neighborhood Hits	191
SwissProt Accessions	Q00444	Gene names	HOXC5, HOX3D
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3D) (CP11).

HXC5_MOUSE
NC score	0.147639 (rank : 300)	θ value	θ > 10 (rank : 418)
Query Neighborhood Hits	331	Target Neighborhood Hits	316	Shared Neighborhood Hits	191
SwissProt Accessions	P32043, Q8BJW4	Gene names	Hoxc5, Hox-3.4, Hoxc-5
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3.4) (Hox-6.2).

HXA9_MOUSE
NC score	0.147621 (rank : 301)	θ value	θ > 10 (rank : 398)
Query Neighborhood Hits	331	Target Neighborhood Hits	334	Shared Neighborhood Hits	208
SwissProt Accessions	P09631, O70154, O70155	Gene names	Hoxa9, Hox-1.7, Hoxa-9
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1.7).

PO4F3_MOUSE
NC score	0.147506 (rank : 302)	θ value	3.0926 (rank : 238)
Query Neighborhood Hits	331	Target Neighborhood Hits	311	Shared Neighborhood Hits	182
SwissProt Accessions	Q63955	Gene names	Pou4f3, Brn-3c, Brn3c
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

PO4F3_HUMAN
NC score	0.147494 (rank : 303)	θ value	3.0926 (rank : 237)
Query Neighborhood Hits	331	Target Neighborhood Hits	307	Shared Neighborhood Hits	182
SwissProt Accessions	Q15319, O60557	Gene names	POU4F3, BRN3C
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

HXA9_HUMAN
NC score	0.147328 (rank : 304)	θ value	θ > 10 (rank : 397)
Query Neighborhood Hits	331	Target Neighborhood Hits	332	Shared Neighborhood Hits	208
SwissProt Accessions	P31269, O43369, O43429, Q99820	Gene names	HOXA9, HOX1G
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1G).

PO3F1_HUMAN
NC score	0.146551 (rank : 305)	θ value	6.88961 (rank : 297)
Query Neighborhood Hits	331	Target Neighborhood Hits	256	Shared Neighborhood Hits	169
SwissProt Accessions	Q03052	Gene names	POU3F1, OCT6, OTF6
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

HXB6_HUMAN
NC score	0.146243 (rank : 306)	θ value	θ > 10 (rank : 407)
Query Neighborhood Hits	331	Target Neighborhood Hits	307	Shared Neighborhood Hits	190
SwissProt Accessions	P17509, P09068, Q9HB11, Q9UGH2	Gene names	HOXB6, HOX2B
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2).

HXB6_MOUSE
NC score	0.146225 (rank : 307)	θ value	θ > 10 (rank : 408)
Query Neighborhood Hits	331	Target Neighborhood Hits	309	Shared Neighborhood Hits	190
SwissProt Accessions	P09023	Gene names	Hoxb6, Hox-2.2, Hoxb-6
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2.2) (Homeobox protein MH-22A).

HXA6_HUMAN
NC score	0.146102 (rank : 308)	θ value	θ > 10 (rank : 393)
Query Neighborhood Hits	331	Target Neighborhood Hits	309	Shared Neighborhood Hits	194
SwissProt Accessions	P31267, Q9UPM0	Gene names	HOXA6, HOX1B
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A6 (Hox-1B).

TF2LX_HUMAN
NC score	0.145591 (rank : 309)	θ value	θ > 10 (rank : 475)
Query Neighborhood Hits	331	Target Neighborhood Hits	108	Shared Neighborhood Hits	64
SwissProt Accessions	Q8IUE1	Gene names	TGIF2LX, TGIFLX
Domain Architecture
Description	Homeobox protein TGIF2LX (TGFB-induced factor 2-like protein, X- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the X).

HXB9_MOUSE
NC score	0.145477 (rank : 310)	θ value	θ > 10 (rank : 414)
Query Neighborhood Hits	331	Target Neighborhood Hits	344	Shared Neighborhood Hits	204
SwissProt Accessions	P20615	Gene names	Hoxb9, Hox-2.5, Hoxb-9
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2.5).

HXB9_HUMAN
NC score	0.145238 (rank : 311)	θ value	θ > 10 (rank : 413)
Query Neighborhood Hits	331	Target Neighborhood Hits	344	Shared Neighborhood Hits	203
SwissProt Accessions	P17482, Q9H1I1	Gene names	HOXB9, HOX2E
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5).

HXA6_MOUSE
NC score	0.145184 (rank : 312)	θ value	θ > 10 (rank : 394)
Query Neighborhood Hits	331	Target Neighborhood Hits	304	Shared Neighborhood Hits	190
SwissProt Accessions	P09092, Q9JI98	Gene names	Hoxa6, Hox-1.2, Hoxa-6
Domain Architecture
Description	Homeobox protein Hox-A6 (Hox-1.2) (M5-4).

HXA5_HUMAN
NC score	0.144811 (rank : 313)	θ value	θ > 10 (rank : 391)
Query Neighborhood Hits	331	Target Neighborhood Hits	336	Shared Neighborhood Hits	197
SwissProt Accessions	P20719, O43367, Q96CY6	Gene names	HOXA5, HOX1C
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1C).

HXA5_MOUSE
NC score	0.144762 (rank : 314)	θ value	θ > 10 (rank : 392)
Query Neighborhood Hits	331	Target Neighborhood Hits	338	Shared Neighborhood Hits	197
SwissProt Accessions	P09021, Q91VQ5	Gene names	Hoxa5, Hox-1.3, Hoxa-5
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1.3) (M2).

HXC10_MOUSE
NC score	0.144602 (rank : 315)	θ value	θ > 10 (rank : 416)
Query Neighborhood Hits	331	Target Neighborhood Hits	417	Shared Neighborhood Hits	206
SwissProt Accessions	P31257, P31312, Q7TMT7	Gene names	Hoxc10, Hox-3.6, Hoxc-10
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C10 (Hox-3.6).

HXC10_HUMAN
NC score	0.143732 (rank : 316)	θ value	θ > 10 (rank : 415)
Query Neighborhood Hits	331	Target Neighborhood Hits	417	Shared Neighborhood Hits	207
SwissProt Accessions	Q9NYD6, O15219, O15220, Q9BVD5	Gene names	HOXC10
Domain Architecture
Description	Homeobox protein Hox-C10.

HXD10_HUMAN
NC score	0.143217 (rank : 317)	θ value	θ > 10 (rank : 425)
Query Neighborhood Hits	331	Target Neighborhood Hits	392	Shared Neighborhood Hits	212
SwissProt Accessions	P28358	Gene names	HOXD10, HOX4D
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4D) (Hox-4E).

HXB5_HUMAN
NC score	0.143100 (rank : 318)	θ value	θ > 10 (rank : 405)
Query Neighborhood Hits	331	Target Neighborhood Hits	332	Shared Neighborhood Hits	195
SwissProt Accessions	P09067, P09069	Gene names	HOXB5, HOX2A
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2A) (HHO.C10) (HU-1).

HXB5_MOUSE
NC score	0.142790 (rank : 319)	θ value	θ > 10 (rank : 406)
Query Neighborhood Hits	331	Target Neighborhood Hits	337	Shared Neighborhood Hits	196
SwissProt Accessions	P09079, Q3ZAY8	Gene names	Hoxb5, Hox-2.1, Hoxb-5
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2.1) (MU-1) (H24.1).

HXC6_HUMAN
NC score	0.142641 (rank : 320)	θ value	θ > 10 (rank : 419)
Query Neighborhood Hits	331	Target Neighborhood Hits	306	Shared Neighborhood Hits	193
SwissProt Accessions	P09630	Gene names	HOXC6, HOX3C
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3C) (HHO.C8) (CP25).

HXC6_MOUSE
NC score	0.142641 (rank : 321)	θ value	θ > 10 (rank : 420)
Query Neighborhood Hits	331	Target Neighborhood Hits	306	Shared Neighborhood Hits	193
SwissProt Accessions	P10629, Q61683	Gene names	Hoxc6, Hox-3.3, Hoxc-6
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3.3) (Hox-6.1).

HXD10_MOUSE
NC score	0.142563 (rank : 322)	θ value	θ > 10 (rank : 426)
Query Neighborhood Hits	331	Target Neighborhood Hits	392	Shared Neighborhood Hits	210
SwissProt Accessions	P28359, Q91WU9	Gene names	Hoxd10, Hox-4.5, Hoxd-10
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4.5) (Hox-5.3).

HXD9_HUMAN
NC score	0.142423 (rank : 323)	θ value	θ > 10 (rank : 431)
Query Neighborhood Hits	331	Target Neighborhood Hits	352	Shared Neighborhood Hits	207
SwissProt Accessions	P28356	Gene names	HOXD9, HOX4C
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2).

HXD9_MOUSE
NC score	0.141325 (rank : 324)	θ value	θ > 10 (rank : 432)
Query Neighborhood Hits	331	Target Neighborhood Hits	359	Shared Neighborhood Hits	207
SwissProt Accessions	P28357, Q3UYS2	Gene names	Hoxd9, Hox-4.4, Hoxd-9
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4.4) (Hox-5.2).

HXC9_HUMAN
NC score	0.140797 (rank : 325)	θ value	θ > 10 (rank : 423)
Query Neighborhood Hits	331	Target Neighborhood Hits	339	Shared Neighborhood Hits	204
SwissProt Accessions	P31274, Q9H1I0	Gene names	HOXC9, HOX3B
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3B).

HXC9_MOUSE
NC score	0.140726 (rank : 326)	θ value	θ > 10 (rank : 424)
Query Neighborhood Hits	331	Target Neighborhood Hits	338	Shared Neighborhood Hits	204
SwissProt Accessions	P09633	Gene names	Hoxc9, Hox-3.2, Hoxc-9
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3.2).

HXA10_HUMAN
NC score	0.139269 (rank : 327)	θ value	θ > 10 (rank : 382)
Query Neighborhood Hits	331	Target Neighborhood Hits	334	Shared Neighborhood Hits	194
SwissProt Accessions	P31260, O43370, O43605, Q15949	Gene names	HOXA10, HOX1H
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL).

HXA10_MOUSE
NC score	0.138204 (rank : 328)	θ value	θ > 10 (rank : 383)
Query Neighborhood Hits	331	Target Neighborhood Hits	365	Shared Neighborhood Hits	194
SwissProt Accessions	P31310, Q80Y22	Gene names	Hoxa10, Hox-1.8, Hoxa-10
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1.8).

PO5F1_HUMAN
NC score	0.136548 (rank : 329)	θ value	8.99809 (rank : 319)
Query Neighborhood Hits	331	Target Neighborhood Hits	321	Shared Neighborhood Hits	182
SwissProt Accessions	Q01860, P31359, Q15167, Q15168, Q16422	Gene names	POU5F1, OCT3, OCT4, OTF3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4).

PO5F1_MOUSE
NC score	0.135917 (rank : 330)	θ value	θ > 10 (rank : 462)
Query Neighborhood Hits	331	Target Neighborhood Hits	305	Shared Neighborhood Hits	172
SwissProt Accessions	P20263, Q63843	Gene names	Pou5f1, Oct-3, Oct-4, Otf-3, Otf3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4) (NF-A3).

TF2LY_HUMAN
NC score	0.135550 (rank : 331)	θ value	θ > 10 (rank : 476)
Query Neighborhood Hits	331	Target Neighborhood Hits	90	Shared Neighborhood Hits	61
SwissProt Accessions	Q8IUE0	Gene names	TGIF2LY, TGIFLY
Domain Architecture
Description	Homeobox protein TGIF2LY (TGFB-induced factor 2-like protein, Y- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the Y).

PKNX1_MOUSE
NC score	0.129123 (rank : 332)	θ value	3.0926 (rank : 232)
Query Neighborhood Hits	331	Target Neighborhood Hits	103	Shared Neighborhood Hits	66
SwissProt Accessions	O70477	Gene names	Pknox1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1).

PO3F4_MOUSE
NC score	0.128117 (rank : 333)	θ value	θ > 10 (rank : 461)
Query Neighborhood Hits	331	Target Neighborhood Hits	281	Shared Neighborhood Hits	170
SwissProt Accessions	P62515, P25216	Gene names	Pou3f4, Brn-4, Brn4, Otf9
Domain Architecture	No domain graphic available
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

PO3F4_HUMAN
NC score	0.128047 (rank : 334)	θ value	θ > 10 (rank : 460)
Query Neighborhood Hits	331	Target Neighborhood Hits	297	Shared Neighborhood Hits	171
SwissProt Accessions	P49335, Q5H9G9, Q99410	Gene names	POU3F4, BRN4, OTF9
Domain Architecture
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

PKNX1_HUMAN
NC score	0.121557 (rank : 335)	θ value	2.36792 (rank : 203)
Query Neighborhood Hits	331	Target Neighborhood Hits	101	Shared Neighborhood Hits	66
SwissProt Accessions	P55347, O00528, Q8IWT7	Gene names	PKNOX1, PREP1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1) (Homeobox protein PREP-1).

HOP_HUMAN
NC score	0.120890 (rank : 336)	θ value	θ > 10 (rank : 380)
Query Neighborhood Hits	331	Target Neighborhood Hits	107	Shared Neighborhood Hits	68
SwissProt Accessions	Q9BPY8, Q8N0V6, Q96CI1	Gene names	HOP, HOD, LAGY, NECC1, OB1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Lung cancer-associated Y protein) (Odd homeobox protein 1) (Not expressed in choriocarcinoma protein 1).

TRPS1_HUMAN
NC score	0.116499 (rank : 337)	θ value	0.0563607 (rank : 68)
Query Neighborhood Hits	331	Target Neighborhood Hits	539	Shared Neighborhood Hits	54
SwissProt Accessions	Q9UHF7, Q9NWE1, Q9UHH6	Gene names	TRPS1
Domain Architecture
Description	Zinc finger transcription factor Trps1 (Zinc finger protein GC79) (Tricho-rhino-phalangeal syndrome type I protein).

HOP_MOUSE
NC score	0.115644 (rank : 338)	θ value	θ > 10 (rank : 381)
Query Neighborhood Hits	331	Target Neighborhood Hits	102	Shared Neighborhood Hits	64
SwissProt Accessions	Q8R1H0, Q8C1N5, Q8CJ22	Gene names	Hop, Hod, Ob1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Homeobox-only protein) (Odd homeobox protein 1) (mOB1).

PO5FM_HUMAN
NC score	0.104928 (rank : 339)	θ value	θ > 10 (rank : 464)
Query Neighborhood Hits	331	Target Neighborhood Hits	212	Shared Neighborhood Hits	135
SwissProt Accessions	Q9BZV7	Gene names	POU5F1P1, POU5FLC20
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 2.

TGIF2_MOUSE
NC score	0.104928 (rank : 340)	θ value	θ > 10 (rank : 478)
Query Neighborhood Hits	331	Target Neighborhood Hits	127	Shared Neighborhood Hits	59
SwissProt Accessions	Q8C0Y1	Gene names	Tgif2
Domain Architecture	No domain graphic available
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

PO5FL_HUMAN
NC score	0.104061 (rank : 341)	θ value	θ > 10 (rank : 463)
Query Neighborhood Hits	331	Target Neighborhood Hits	214	Shared Neighborhood Hits	132
SwissProt Accessions	Q06416, Q9BZV9	Gene names	POU5F1P1, OTF3C, POU5FLC8
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 1 (Octamer- binding protein 3-like).

CUTL1_MOUSE
NC score	0.101629 (rank : 342)	θ value	0.279714 (rank : 109)
Query Neighborhood Hits	331	Target Neighborhood Hits	1620	Shared Neighborhood Hits	194
SwissProt Accessions	P53564, O08994, P70301, Q571L6, Q91ZD2	Gene names	Cutl1, Cux, Cux1, Kiaa4047
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP) (Homeobox protein Cux).

TGIF2_HUMAN
NC score	0.099494 (rank : 343)	θ value	θ > 10 (rank : 477)
Query Neighborhood Hits	331	Target Neighborhood Hits	94	Shared Neighborhood Hits	51
SwissProt Accessions	Q9GZN2	Gene names	TGIF2
Domain Architecture
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

MEIS2_HUMAN
NC score	0.099429 (rank : 344)	θ value	6.88961 (rank : 292)
Query Neighborhood Hits	331	Target Neighborhood Hits	182	Shared Neighborhood Hits	88
SwissProt Accessions	O14770, Q96KI4, Q96KI5, Q9NRS1, Q9NRS2, Q9NRS3	Gene names	MEIS2, MRG1
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

MEIS2_MOUSE
NC score	0.099132 (rank : 345)	θ value	6.88961 (rank : 293)
Query Neighborhood Hits	331	Target Neighborhood Hits	208	Shared Neighborhood Hits	90
SwissProt Accessions	P97367, O35676, O35677, P97403, P97404	Gene names	Meis2, Mrg1, Stra10
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

CUTL1_HUMAN
NC score	0.097494 (rank : 346)	θ value	0.47712 (rank : 128)
Query Neighborhood Hits	331	Target Neighborhood Hits	1574	Shared Neighborhood Hits	186
SwissProt Accessions	P39880, Q6NYH4, Q9UEV5	Gene names	CUTL1
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP).

MEIS1_MOUSE
NC score	0.096818 (rank : 347)	θ value	θ > 10 (rank : 442)
Query Neighborhood Hits	331	Target Neighborhood Hits	115	Shared Neighborhood Hits	83
SwissProt Accessions	Q60954, Q5SVC8, Q60955, Q8CIL0	Gene names	Meis1
Domain Architecture
Description	Homeobox protein Meis1 (Myeloid ecotropic viral integration site 1).

MEIS1_HUMAN
NC score	0.096817 (rank : 348)	θ value	θ > 10 (rank : 441)
Query Neighborhood Hits	331	Target Neighborhood Hits	115	Shared Neighborhood Hits	83
SwissProt Accessions	O00470	Gene names	MEIS1
Domain Architecture
Description	Homeobox protein Meis1.

MEIS3_HUMAN
NC score	0.096757 (rank : 349)	θ value	θ > 10 (rank : 443)
Query Neighborhood Hits	331	Target Neighborhood Hits	118	Shared Neighborhood Hits	84
SwissProt Accessions	Q99687, Q6NT73, Q8TC66, Q9NPW2	Gene names	MEIS3, MRG2
Domain Architecture	No domain graphic available
Description	Homeobox protein Meis3 (Meis1-related protein 2).

PO5FN_HUMAN
NC score	0.096298 (rank : 350)	θ value	θ > 10 (rank : 465)
Query Neighborhood Hits	331	Target Neighborhood Hits	134	Shared Neighborhood Hits	94
SwissProt Accessions	Q9BZW0	Gene names	POU5FLC1
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 3.

MEIS3_MOUSE
NC score	0.094690 (rank : 351)	θ value	θ > 10 (rank : 444)
Query Neighborhood Hits	331	Target Neighborhood Hits	118	Shared Neighborhood Hits	83
SwissProt Accessions	P97368, Q99L81	Gene names	Meis3, Mrg2
Domain Architecture
Description	Homeobox protein Meis3 (Meis1-related protein 2).

PKNX2_MOUSE
NC score	0.094016 (rank : 352)	θ value	6.88961 (rank : 296)
Query Neighborhood Hits	331	Target Neighborhood Hits	197	Shared Neighborhood Hits	67
SwissProt Accessions	Q8BG99, Q8R4B0	Gene names	Pknox2, Prep2
Domain Architecture	No domain graphic available
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

CUTL2_HUMAN
NC score	0.093484 (rank : 353)	θ value	2.36792 (rank : 192)
Query Neighborhood Hits	331	Target Neighborhood Hits	906	Shared Neighborhood Hits	161
SwissProt Accessions	O14529	Gene names	CUTL2, KIAA0293
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

PKNX2_HUMAN
NC score	0.092264 (rank : 354)	θ value	6.88961 (rank : 295)
Query Neighborhood Hits	331	Target Neighborhood Hits	133	Shared Neighborhood Hits	63
SwissProt Accessions	Q96KN3, Q63HL6, Q86XD1	Gene names	PKNOX2, PREP2
Domain Architecture
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

TRPS1_MOUSE
NC score	0.091558 (rank : 355)	θ value	0.813845 (rank : 159)
Query Neighborhood Hits	331	Target Neighborhood Hits	609	Shared Neighborhood Hits	53
SwissProt Accessions	Q925H1	Gene names	Trps1
Domain Architecture
Description	Zinc finger transcription factor Trps1.

LMO4_HUMAN
NC score	0.089859 (rank : 356)	θ value	θ > 10 (rank : 439)
Query Neighborhood Hits	331	Target Neighborhood Hits	111	Shared Neighborhood Hits	24
SwissProt Accessions	P61968, O00158, O88894	Gene names	LMO4
Domain Architecture
Description	LIM domain transcription factor LMO4 (LIM domain only protein 4) (LMO- 4) (Breast tumor autoantigen).

LMO4_MOUSE
NC score	0.089859 (rank : 357)	θ value	θ > 10 (rank : 440)
Query Neighborhood Hits	331	Target Neighborhood Hits	111	Shared Neighborhood Hits	24
SwissProt Accessions	P61969, O00158, O88894	Gene names	Lmo4
Domain Architecture
Description	LIM domain transcription factor LMO4 (LIM domain only protein 4) (LMO- 4) (Breast tumor autoantigen).

TGIF_MOUSE
NC score	0.089631 (rank : 358)	θ value	θ > 10 (rank : 480)
Query Neighborhood Hits	331	Target Neighborhood Hits	125	Shared Neighborhood Hits	52
SwissProt Accessions	P70284, Q921F9, Q99JS3	Gene names	Tgif
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

CUTL2_MOUSE
NC score	0.089135 (rank : 359)	θ value	θ > 10 (rank : 354)
Query Neighborhood Hits	331	Target Neighborhood Hits	771	Shared Neighborhood Hits	166
SwissProt Accessions	P70298	Gene names	Cutl2
Domain Architecture
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

LMO3_HUMAN
NC score	0.087412 (rank : 360)	θ value	θ > 10 (rank : 437)
Query Neighborhood Hits	331	Target Neighborhood Hits	111	Shared Neighborhood Hits	24
SwissProt Accessions	Q8TAP4, Q8N974, Q9UDD5	Gene names	LMO3, RBTN3, RHOM3
Domain Architecture
Description	LIM-only protein 3 (Neuronal-specific transcription factor DAT1) (Rhombotin-3).

LMO3_MOUSE
NC score	0.087412 (rank : 361)	θ value	θ > 10 (rank : 438)
Query Neighborhood Hits	331	Target Neighborhood Hits	111	Shared Neighborhood Hits	24
SwissProt Accessions	Q8BZL8	Gene names	Lmo3
Domain Architecture
Description	LIM-only protein 3 (Neuronal-specific transcription factor DAT1).

RBTN1_HUMAN
NC score	0.087374 (rank : 362)	θ value	θ > 10 (rank : 468)
Query Neighborhood Hits	331	Target Neighborhood Hits	110	Shared Neighborhood Hits	24
SwissProt Accessions	P25800, Q4VBC5	Gene names	LMO1, RBTN1, RHOM1, TTG1
Domain Architecture
Description	Rhombotin-1 (Cysteine-rich protein TTG-1) (T-cell translocation protein 1) (LIM-only protein 1).

RBTN1_MOUSE
NC score	0.087370 (rank : 363)	θ value	θ > 10 (rank : 469)
Query Neighborhood Hits	331	Target Neighborhood Hits	109	Shared Neighborhood Hits	24
SwissProt Accessions	Q924W9	Gene names	Lmo1, Rbtn1, Rhom1, Ttg1
Domain Architecture	No domain graphic available
Description	Rhombotin-1 (Cysteine-rich protein TTG-1) (LIM-only protein 1).

TGIF_HUMAN
NC score	0.087096 (rank : 364)	θ value	θ > 10 (rank : 479)
Query Neighborhood Hits	331	Target Neighborhood Hits	109	Shared Neighborhood Hits	51
SwissProt Accessions	Q15583, Q6ICR0, Q8N5X9, Q9NRS0	Gene names	TGIF
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

RBTN2_MOUSE
NC score	0.084128 (rank : 365)	θ value	θ > 10 (rank : 471)
Query Neighborhood Hits	331	Target Neighborhood Hits	114	Shared Neighborhood Hits	24
SwissProt Accessions	P25801	Gene names	Lmo2, Rbtn-2, Rbtn2, Rhom-2
Domain Architecture
Description	Rhombotin-2 (Cysteine-rich protein TTG-2) (T-cell translocation protein 2) (LIM-only protein 2).

RBTN2_HUMAN
NC score	0.084126 (rank : 366)	θ value	θ > 10 (rank : 470)
Query Neighborhood Hits	331	Target Neighborhood Hits	114	Shared Neighborhood Hits	24
SwissProt Accessions	P25791, Q9HD58	Gene names	LMO2, RBTN2, RHOM2, TTG2
Domain Architecture
Description	Rhombotin-2 (Cysteine-rich protein TTG-2) (T-cell translocation protein 2) (LIM-only protein 2).

HMBX1_HUMAN
NC score	0.078708 (rank : 367)	θ value	θ > 10 (rank : 374)
Query Neighborhood Hits	331	Target Neighborhood Hits	118	Shared Neighborhood Hits	77
SwissProt Accessions	Q6NT76, Q3Y6P1, Q96GS5, Q9H701	Gene names	HMBOX1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

SATB1_MOUSE
NC score	0.077253 (rank : 368)	θ value	0.62314 (rank : 144)
Query Neighborhood Hits	331	Target Neighborhood Hits	130	Shared Neighborhood Hits	42
SwissProt Accessions	Q60611	Gene names	Satb1
Domain Architecture
Description	DNA-binding protein SATB1 (Special AT-rich sequence-binding protein 1).

SATB1_HUMAN
NC score	0.075277 (rank : 369)	θ value	0.813845 (rank : 158)
Query Neighborhood Hits	331	Target Neighborhood Hits	130	Shared Neighborhood Hits	43
SwissProt Accessions	Q01826	Gene names	SATB1
Domain Architecture
Description	DNA-binding protein SATB1 (Special AT-rich sequence-binding protein 1).

SPRM1_MOUSE
NC score	0.070576 (rank : 370)	θ value	θ > 10 (rank : 474)
Query Neighborhood Hits	331	Target Neighborhood Hits	73	Shared Neighborhood Hits	52
SwissProt Accessions	Q9DAC9	Gene names	Sprm1
Domain Architecture
Description	Sperm 1 POU-domain transcription factor (SPRM-1).

SPRM1_HUMAN
NC score	0.070565 (rank : 371)	θ value	θ > 10 (rank : 473)
Query Neighborhood Hits	331	Target Neighborhood Hits	72	Shared Neighborhood Hits	53
SwissProt Accessions	Q8N7G0, Q8N748	Gene names	SPRM1
Domain Architecture
Description	Sperm 1 POU-domain transcription factor (SPRM-1).

RHOX5_MOUSE
NC score	0.069733 (rank : 372)	θ value	θ > 10 (rank : 472)
Query Neighborhood Hits	331	Target Neighborhood Hits	69	Shared Neighborhood Hits	39
SwissProt Accessions	P52651	Gene names	Rhox5, Pem
Domain Architecture	No domain graphic available
Description	Homeobox protein Rhox5 (Reproductive homeobox on chromosome X 5) (Homeobox protein Pem) (Placenta and embryonic expression protein).

ZN462_HUMAN
NC score	0.068703 (rank : 373)	θ value	0.0736092 (rank : 76)
Query Neighborhood Hits	331	Target Neighborhood Hits	740	Shared Neighborhood Hits	59
SwissProt Accessions	Q96JM2, Q8N408	Gene names	ZNF462, KIAA1803
Domain Architecture	No domain graphic available
Description	Zinc finger protein 462.

HMBX1_MOUSE
NC score	0.067562 (rank : 374)	θ value	θ > 10 (rank : 375)
Query Neighborhood Hits	331	Target Neighborhood Hits	117	Shared Neighborhood Hits	75
SwissProt Accessions	Q8BJA3, Q80WC2, Q8BWE7, Q99LV1	Gene names	Hmbox1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

ADNP_HUMAN
NC score	0.064791 (rank : 375)	θ value	θ > 10 (rank : 332)
Query Neighborhood Hits	331	Target Neighborhood Hits	265	Shared Neighborhood Hits	67
SwissProt Accessions	Q9H2P0, O94881, Q9UG34	Gene names	ADNP, KIAA0784
Domain Architecture
Description	Activity-dependent neuroprotector (Activity-dependent neuroprotective protein).

ZN409_HUMAN
NC score	0.063292 (rank : 376)	θ value	θ > 10 (rank : 484)
Query Neighborhood Hits	331	Target Neighborhood Hits	842	Shared Neighborhood Hits	60
SwissProt Accessions	Q9UPU6	Gene names	ZNF409, KIAA1056
Domain Architecture	No domain graphic available
Description	Zinc finger protein 409.

PAX2_MOUSE
NC score	0.059880 (rank : 377)	θ value	θ > 10 (rank : 453)
Query Neighborhood Hits	331	Target Neighborhood Hits	86	Shared Neighborhood Hits	40
SwissProt Accessions	P32114	Gene names	Pax2, Pax-2
Domain Architecture
Description	Paired box protein Pax-2.

PAX2_HUMAN
NC score	0.059777 (rank : 378)	θ value	θ > 10 (rank : 452)
Query Neighborhood Hits	331	Target Neighborhood Hits	84	Shared Neighborhood Hits	40
SwissProt Accessions	Q02962, Q15105, Q15110, Q15837	Gene names	PAX2
Domain Architecture
Description	Paired box protein Pax-2.

ZN507_HUMAN
NC score	0.058146 (rank : 379)	θ value	9.29e-05 (rank : 14)
Query Neighborhood Hits	331	Target Neighborhood Hits	739	Shared Neighborhood Hits	54
SwissProt Accessions	Q8TCN5	Gene names	ZNF507
Domain Architecture	No domain graphic available
Description	Zinc finger protein 507.

LASS2_HUMAN
NC score	0.057304 (rank : 380)	θ value	0.813845 (rank : 153)
Query Neighborhood Hits	331	Target Neighborhood Hits	47	Shared Neighborhood Hits	31
SwissProt Accessions	Q96G23, Q9HD96, Q9NW79	Gene names	LASS2, TMSG1
Domain Architecture	No domain graphic available
Description	LAG1 longevity assurance homolog 2 (Tumor metastasis-suppressor gene 1 protein) (SP260).

PAX5_MOUSE
NC score	0.055921 (rank : 381)	θ value	θ > 10 (rank : 455)
Query Neighborhood Hits	331	Target Neighborhood Hits	106	Shared Neighborhood Hits	36
SwissProt Accessions	Q02650	Gene names	Pax5, Pax-5
Domain Architecture
Description	Paired box protein Pax-5 (B-cell-specific transcription factor) (BSAP).

ZCH10_HUMAN
NC score	0.055880 (rank : 382)	θ value	θ > 10 (rank : 483)
Query Neighborhood Hits	331	Target Neighborhood Hits	123	Shared Neighborhood Hits	9
SwissProt Accessions	Q8TBK6, Q9NXR4	Gene names	ZCCHC10
Domain Architecture	No domain graphic available
Description	Zinc finger CCHC domain-containing protein 10.

PAX5_HUMAN
NC score	0.055779 (rank : 383)	θ value	θ > 10 (rank : 454)
Query Neighborhood Hits	331	Target Neighborhood Hits	106	Shared Neighborhood Hits	36
SwissProt Accessions	Q02548, O75933	Gene names	PAX5
Domain Architecture
Description	Paired box protein Pax-5 (B-cell-specific transcription factor) (BSAP).

LPIN3_MOUSE
NC score	0.055024 (rank : 384)	θ value	0.0193708 (rank : 49)
Query Neighborhood Hits	331	Target Neighborhood Hits	52	Shared Neighborhood Hits	4
SwissProt Accessions	Q99PI4, Q3TQ75, Q8C7R9	Gene names	Lpin3
Domain Architecture
Description	Lipin-3.

HNF6_MOUSE
NC score	0.053769 (rank : 385)	θ value	θ > 10 (rank : 379)
Query Neighborhood Hits	331	Target Neighborhood Hits	124	Shared Neighborhood Hits	71
SwissProt Accessions	O08755	Gene names	Onecut1, Hnf6, Hnf6a
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

HNF6_HUMAN
NC score	0.053660 (rank : 386)	θ value	θ > 10 (rank : 378)
Query Neighborhood Hits	331	Target Neighborhood Hits	127	Shared Neighborhood Hits	70
SwissProt Accessions	Q9UBC0, Q99744, Q9UMR6	Gene names	ONECUT1, HNF6, HNF6A
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

PAX8_MOUSE
NC score	0.051710 (rank : 387)	θ value	θ > 10 (rank : 456)
Query Neighborhood Hits	331	Target Neighborhood Hits	62	Shared Neighborhood Hits	21
SwissProt Accessions	Q00288, P97342	Gene names	Pax8, Pax-8
Domain Architecture
Description	Paired box protein Pax-8.

LASS2_MOUSE
NC score	0.044923 (rank : 388)	θ value	1.81305 (rank : 180)
Query Neighborhood Hits	331	Target Neighborhood Hits	51	Shared Neighborhood Hits	30
SwissProt Accessions	Q924Z4, Q3TXC5, Q9DCN6	Gene names	Lass2, Trh3
Domain Architecture	No domain graphic available
Description	LAG1 longevity assurance homolog 2 (Translocating chain-associating membrane protein homolog 3) (TRAM homolog 3).

ZN142_HUMAN
NC score	0.043613 (rank : 389)	θ value	0.0193708 (rank : 52)
Query Neighborhood Hits	331	Target Neighborhood Hits	1007	Shared Neighborhood Hits	72
SwissProt Accessions	P52746, Q92510	Gene names	ZNF142, KIAA0236
Domain Architecture	No domain graphic available
Description	Zinc finger protein 142 (HA4654).

ZN711_HUMAN
NC score	0.043121 (rank : 390)	θ value	0.365318 (rank : 127)
Query Neighborhood Hits	331	Target Neighborhood Hits	751	Shared Neighborhood Hits	58
SwissProt Accessions	Q9Y462, Q6NX42, Q9Y4J6	Gene names	ZNF711, CMPX1, ZNF6
Domain Architecture
Description	Zinc finger protein 711 (Zinc finger protein 6).

ZFY2_MOUSE
NC score	0.041807 (rank : 391)	θ value	2.36792 (rank : 208)
Query Neighborhood Hits	331	Target Neighborhood Hits	795	Shared Neighborhood Hits	58
SwissProt Accessions	P20662	Gene names	Zfy2, Zfy-2
Domain Architecture
Description	Zinc finger Y-chromosomal protein 2.

ZFY1_MOUSE
NC score	0.041744 (rank : 392)	θ value	1.81305 (rank : 185)
Query Neighborhood Hits	331	Target Neighborhood Hits	790	Shared Neighborhood Hits	58
SwissProt Accessions	P10925	Gene names	Zfy1, Zfy-1
Domain Architecture
Description	Zinc finger Y-chromosomal protein 1.

ZFY_HUMAN
NC score	0.040749 (rank : 393)	θ value	0.62314 (rank : 149)
Query Neighborhood Hits	331	Target Neighborhood Hits	752	Shared Neighborhood Hits	59
SwissProt Accessions	P08048, Q14021, Q15558, Q96TF3	Gene names	ZFY
Domain Architecture
Description	Zinc finger Y-chromosomal protein.

ZFX_HUMAN
NC score	0.040700 (rank : 394)	θ value	0.62314 (rank : 147)
Query Neighborhood Hits	331	Target Neighborhood Hits	751	Shared Neighborhood Hits	57
SwissProt Accessions	P17010, O43668, Q8WYJ8	Gene names	ZFX
Domain Architecture
Description	Zinc finger X-chromosomal protein.

ZFX_MOUSE
NC score	0.040641 (rank : 395)	θ value	0.62314 (rank : 148)
Query Neighborhood Hits	331	Target Neighborhood Hits	748	Shared Neighborhood Hits	57
SwissProt Accessions	P17012, P17011	Gene names	Zfx
Domain Architecture
Description	Zinc finger X-chromosomal protein.

ZFA_MOUSE
NC score	0.040079 (rank : 396)	θ value	0.279714 (rank : 118)
Query Neighborhood Hits	331	Target Neighborhood Hits	746	Shared Neighborhood Hits	56
SwissProt Accessions	P23607	Gene names	Zfa
Domain Architecture
Description	Zinc finger autosomal protein.

ZN406_HUMAN
NC score	0.038738 (rank : 397)	θ value	1.38821 (rank : 173)
Query Neighborhood Hits	331	Target Neighborhood Hits	794	Shared Neighborhood Hits	55
SwissProt Accessions	Q9P243, Q3MIM5, Q6PJ01, Q75PJ7, Q75PJ9, Q86X64	Gene names	ZNF406, KIAA1485
Domain Architecture	No domain graphic available
Description	Zinc finger protein 406 (Protein ZFAT).

ZN236_HUMAN
NC score	0.038051 (rank : 398)	θ value	0.279714 (rank : 119)
Query Neighborhood Hits	331	Target Neighborhood Hits	844	Shared Neighborhood Hits	60
SwissProt Accessions	Q9UL36, Q9UL37	Gene names	ZNF236
Domain Architecture	No domain graphic available
Description	Zinc finger protein 236.

ZN406_MOUSE
NC score	0.037630 (rank : 399)	θ value	1.81305 (rank : 187)
Query Neighborhood Hits	331	Target Neighborhood Hits	800	Shared Neighborhood Hits	58
SwissProt Accessions	Q7TS63	Gene names	Znf406, Zfp406
Domain Architecture	No domain graphic available
Description	Zinc finger protein 406.

MIZF_MOUSE
NC score	0.036905 (rank : 400)	θ value	8.99809 (rank : 313)
Query Neighborhood Hits	331	Target Neighborhood Hits	726	Shared Neighborhood Hits	56
SwissProt Accessions	Q8K1K9, Q8BWY0	Gene names	Mizf
Domain Architecture	No domain graphic available
Description	MBD2-interacting zinc finger protein (Methyl-CpG-binding protein 2- interacting zinc finger protein).

K1802_HUMAN
NC score	0.036099 (rank : 401)	θ value	5.27518 (rank : 271)
Query Neighborhood Hits	331	Target Neighborhood Hits	1378	Shared Neighborhood Hits	77
SwissProt Accessions	Q96JM3, Q6P181, Q8NC88, Q9BST0	Gene names	KIAA1802, C13orf8
Domain Architecture	No domain graphic available
Description	Zinc finger protein KIAA1802.

ZN335_HUMAN
NC score	0.033672 (rank : 402)	θ value	0.813845 (rank : 160)
Query Neighborhood Hits	331	Target Neighborhood Hits	973	Shared Neighborhood Hits	64
SwissProt Accessions	Q9H4Z2, Q9H684	Gene names	ZNF335
Domain Architecture	No domain graphic available
Description	Zinc finger protein 335.

FETUB_MOUSE
NC score	0.033116 (rank : 403)	θ value	0.47712 (rank : 129)
Query Neighborhood Hits	331	Target Neighborhood Hits	47	Shared Neighborhood Hits	4
SwissProt Accessions	Q9QXC1	Gene names	Fetub
Domain Architecture
Description	Fetuin-B precursor (IRL685).

ZN592_HUMAN
NC score	0.032839 (rank : 404)	θ value	5.27518 (rank : 280)
Query Neighborhood Hits	331	Target Neighborhood Hits	762	Shared Neighborhood Hits	54
SwissProt Accessions	Q92610	Gene names	ZNF592, KIAA0211
Domain Architecture	No domain graphic available
Description	Zinc finger protein 592.

ZFP64_MOUSE
NC score	0.032790 (rank : 405)	θ value	0.0736092 (rank : 75)
Query Neighborhood Hits	331	Target Neighborhood Hits	733	Shared Neighborhood Hits	53
SwissProt Accessions	Q99KE8, P97365, Q9CWR3	Gene names	Zfp64
Domain Architecture	No domain graphic available
Description	Zinc finger protein 64 (Zfp-64).

ZN592_MOUSE
NC score	0.032717 (rank : 406)	θ value	2.36792 (rank : 209)
Query Neighborhood Hits	331	Target Neighborhood Hits	768	Shared Neighborhood Hits	54
SwissProt Accessions	Q8BHZ4, Q80XM1	Gene names	Znf592, Kiaa0211, Zfp592
Domain Architecture	No domain graphic available
Description	Zinc finger protein 592 (Zfp-592).

SUHW3_HUMAN
NC score	0.032521 (rank : 407)	θ value	6.88961 (rank : 299)
Query Neighborhood Hits	331	Target Neighborhood Hits	695	Shared Neighborhood Hits	49
SwissProt Accessions	Q8ND82, Q9NXR3	Gene names	SUHW3
Domain Architecture	No domain graphic available
Description	Suppressor of hairy wing homolog 3.

ZF64B_HUMAN
NC score	0.032436 (rank : 408)	θ value	0.0736092 (rank : 74)
Query Neighborhood Hits	331	Target Neighborhood Hits	740	Shared Neighborhood Hits	53
SwissProt Accessions	Q9NTW7, Q8WU98, Q9H9P1	Gene names	ZFP64, ZNF338
Domain Architecture	No domain graphic available
Description	Zinc finger protein 64, isoforms 3 and 4 (Zinc finger protein 338).

ZF64A_HUMAN
NC score	0.031827 (rank : 409)	θ value	0.279714 (rank : 117)
Query Neighborhood Hits	331	Target Neighborhood Hits	737	Shared Neighborhood Hits	53
SwissProt Accessions	Q9NPA5, Q9NTS7, Q9NVH4	Gene names	ZFP64, ZNF338
Domain Architecture	No domain graphic available
Description	Zinc finger protein 64, isoforms 1 and 2 (Zinc finger protein 338).

TCF8_MOUSE
NC score	0.031117 (rank : 410)	θ value	3.0926 (rank : 239)
Query Neighborhood Hits	331	Target Neighborhood Hits	1067	Shared Neighborhood Hits	96
SwissProt Accessions	Q64318, Q62519	Gene names	Tcf8, Zfhx1a, Zfx1a, Zfx1ha
Domain Architecture
Description	Transcription factor 8 (Zinc finger homeobox protein 1a) (MEB1) (Delta EF1).

LPIN3_HUMAN
NC score	0.030835 (rank : 411)	θ value	2.36792 (rank : 197)
Query Neighborhood Hits	331	Target Neighborhood Hits	92	Shared Neighborhood Hits	8
SwissProt Accessions	Q9BQK8, Q5TDB9, Q9NPY8, Q9UJE5	Gene names	LPIN3, LIPN3L
Domain Architecture	No domain graphic available
Description	Lipin-3 (Lipin 3-like).

TCF8_HUMAN
NC score	0.030741 (rank : 412)	θ value	8.99809 (rank : 325)
Query Neighborhood Hits	331	Target Neighborhood Hits	1057	Shared Neighborhood Hits	95
SwissProt Accessions	P37275, Q12924, Q13800	Gene names	TCF8, AREB6
Domain Architecture
Description	Transcription factor 8 (NIL-2-A zinc finger protein) (Negative regulator of IL2).

ZN513_HUMAN
NC score	0.030722 (rank : 413)	θ value	0.365318 (rank : 126)
Query Neighborhood Hits	331	Target Neighborhood Hits	709	Shared Neighborhood Hits	53
SwissProt Accessions	Q8N8E2	Gene names	ZNF513
Domain Architecture	No domain graphic available
Description	Zinc finger protein 513.

PRD10_HUMAN
NC score	0.028927 (rank : 414)	θ value	8.99809 (rank : 320)
Query Neighborhood Hits	331	Target Neighborhood Hits	769	Shared Neighborhood Hits	57
SwissProt Accessions	Q9NQV6, Q9ULI9	Gene names	PRDM10, KIAA1231, PFM7
Domain Architecture	No domain graphic available
Description	PR domain zinc finger protein 10 (PR domain-containing protein 10).

BSN_MOUSE
NC score	0.028806 (rank : 415)	θ value	6.88961 (rank : 283)
Query Neighborhood Hits	331	Target Neighborhood Hits	2057	Shared Neighborhood Hits	74
SwissProt Accessions	O88737, Q6ZQB5	Gene names	Bsn, Kiaa0434
Domain Architecture	No domain graphic available
Description	Protein bassoon.

LASS3_HUMAN
NC score	0.028554 (rank : 416)	θ value	4.03905 (rank : 250)
Query Neighborhood Hits	331	Target Neighborhood Hits	70	Shared Neighborhood Hits	29
SwissProt Accessions	Q8IU89, Q8NE64, Q8NEN6	Gene names	LASS3
Domain Architecture	No domain graphic available
Description	LAG1 longevity assurance homolog 3.

HNF1A_MOUSE
NC score	0.028452 (rank : 417)	θ value	8.99809 (rank : 311)
Query Neighborhood Hits	331	Target Neighborhood Hits	212	Shared Neighborhood Hits	36
SwissProt Accessions	P22361	Gene names	Tcf1, Hnf-1, Hnf-1a, Hnf1a
Domain Architecture
Description	Hepatocyte nuclear factor 1-alpha (HNF-1A) (Liver-specific transcription factor LF-B1) (LFB1).

CTCF_HUMAN
NC score	0.028198 (rank : 418)	θ value	0.365318 (rank : 120)
Query Neighborhood Hits	331	Target Neighborhood Hits	764	Shared Neighborhood Hits	52
SwissProt Accessions	P49711	Gene names	CTCF
Domain Architecture
Description	Transcriptional repressor CTCF (CCCTC-binding factor) (CTCFL paralog) (11-zinc finger protein).

CTCF_MOUSE
NC score	0.028172 (rank : 419)	θ value	0.365318 (rank : 121)
Query Neighborhood Hits	331	Target Neighborhood Hits	796	Shared Neighborhood Hits	54
SwissProt Accessions	Q61164	Gene names	Ctcf
Domain Architecture
Description	Transcriptional repressor CTCF (CCCTC-binding factor) (CTCFL paralog) (11-zinc finger protein).

BSN_HUMAN
NC score	0.027300 (rank : 420)	θ value	6.88961 (rank : 282)
Query Neighborhood Hits	331	Target Neighborhood Hits	1537	Shared Neighborhood Hits	50
SwissProt Accessions	Q9UPA5, O43161, Q7LGH3	Gene names	BSN, KIAA0434, ZNF231
Domain Architecture	No domain graphic available
Description	Protein bassoon (Zinc finger protein 231).

CBP_HUMAN
NC score	0.027141 (rank : 421)	θ value	4.03905 (rank : 242)
Query Neighborhood Hits	331	Target Neighborhood Hits	941	Shared Neighborhood Hits	40
SwissProt Accessions	Q92793, O00147, Q16376	Gene names	CREBBP, CBP
Domain Architecture
Description	CREB-binding protein (EC 2.3.1.48).

CT2NL_HUMAN
NC score	0.026828 (rank : 422)	θ value	0.00390308 (rank : 21)
Query Neighborhood Hits	331	Target Neighborhood Hits	1059	Shared Neighborhood Hits	26
SwissProt Accessions	Q9P2B4, Q96B40	Gene names	CTTNBP2NL, KIAA1433
Domain Architecture	No domain graphic available
Description	CTTNBP2 N-terminal-like protein.

ZBT40_HUMAN
NC score	0.026785 (rank : 423)	θ value	0.0961366 (rank : 86)
Query Neighborhood Hits	331	Target Neighborhood Hits	949	Shared Neighborhood Hits	58
SwissProt Accessions	Q9NUA8, O75066, Q5TFU5, Q8N1R1	Gene names	ZBTB40, KIAA0478
Domain Architecture
Description	Zinc finger and BTB domain-containing protein 40.

OVOL2_HUMAN
NC score	0.025752 (rank : 424)	θ value	3.0926 (rank : 228)
Query Neighborhood Hits	331	Target Neighborhood Hits	715	Shared Neighborhood Hits	54
SwissProt Accessions	Q9BRP0, Q5T8B4, Q9BX22, Q9HA54, Q9Y4M0	Gene names	OVOL2, ZNF339
Domain Architecture	No domain graphic available
Description	Transcription factor Ovo-like 2 (hOvo2) (Zinc finger protein 339).

SON_HUMAN
NC score	0.025565 (rank : 425)	θ value	0.47712 (rank : 139)
Query Neighborhood Hits	331	Target Neighborhood Hits	1568	Shared Neighborhood Hits	53
SwissProt Accessions	P18583, O14487, O95981, Q14120, Q9H7B1, Q9P070, Q9P072, Q9UKP9, Q9UPY0	Gene names	SON, C21orf50, DBP5, KIAA1019, NREBP
Domain Architecture
Description	SON protein (SON3) (Negative regulatory element-binding protein) (NRE- binding protein) (DBP-5) (Bax antagonist selected in saccharomyces 1) (BASS1).

ZBT47_HUMAN
NC score	0.025445 (rank : 426)	θ value	0.279714 (rank : 116)
Query Neighborhood Hits	331	Target Neighborhood Hits	737	Shared Neighborhood Hits	55
SwissProt Accessions	Q9UFB7, Q8WTY8, Q9ULN0	Gene names	ZBTB47, KIAA1190, ZNF651
Domain Architecture	No domain graphic available
Description	Zinc finger and BTB domain-containing protein 47 (Zinc finger protein 651).

ACD_HUMAN
NC score	0.023510 (rank : 427)	θ value	2.36792 (rank : 188)
Query Neighborhood Hits	331	Target Neighborhood Hits	143	Shared Neighborhood Hits	7
SwissProt Accessions	Q96AP0, Q562H5, Q9H8F9	Gene names	ACD, PIP1, PTOP
Domain Architecture	No domain graphic available
Description	Adrenocortical dysplasia protein homolog (POT1 and TIN2-interacting protein).

TSH1_MOUSE
NC score	0.023404 (rank : 428)	θ value	6.88961 (rank : 302)
Query Neighborhood Hits	331	Target Neighborhood Hits	675	Shared Neighborhood Hits	52
SwissProt Accessions	Q5DTH5, Q6PE60, Q8VD19, Q9JLD5	Gene names	Tshz1, Kiaa4206, Sdccag33, Tsh1
Domain Architecture	No domain graphic available
Description	Teashirt homolog 1 (Serologically defined colon cancer antigen 3 homolog).

CIC_HUMAN
NC score	0.022937 (rank : 429)	θ value	4.03905 (rank : 244)
Query Neighborhood Hits	331	Target Neighborhood Hits	992	Shared Neighborhood Hits	43
SwissProt Accessions	Q96RK0, Q7LGI1, Q9UEG5, Q9Y6T1	Gene names	CIC, KIAA0306
Domain Architecture	No domain graphic available
Description	Protein capicua homolog.

ZN710_HUMAN
NC score	0.022883 (rank : 430)	θ value	8.99809 (rank : 331)
Query Neighborhood Hits	331	Target Neighborhood Hits	796	Shared Neighborhood Hits	54
SwissProt Accessions	Q8N1W2, Q6ZMK9, Q8NDU0	Gene names	ZNF710
Domain Architecture	No domain graphic available
Description	Zinc finger protein 710.

MYNN_HUMAN
NC score	0.022617 (rank : 431)	θ value	1.06291 (rank : 164)
Query Neighborhood Hits	331	Target Neighborhood Hits	826	Shared Neighborhood Hits	54
SwissProt Accessions	Q9NPC7, Q6QHA6, Q6QHA7, Q6R3G1, Q6R3G2, Q6R4A0, Q7Z716, Q7Z717, Q86Z11, Q86Z12, Q9NS01, Q9UIW8	Gene names	MYNN, OSZF, ZBTB31
Domain Architecture	No domain graphic available
Description	Myoneurin (Zinc finger and BTB domain-containing protein 31).

MYNN_MOUSE
NC score	0.022515 (rank : 432)	θ value	1.06291 (rank : 165)
Query Neighborhood Hits	331	Target Neighborhood Hits	820	Shared Neighborhood Hits	53
SwissProt Accessions	Q99MD8, Q6P1G7, Q8BT55, Q922I4, Q9CSA0, Q9CXJ8	Gene names	Mynn
Domain Architecture	No domain graphic available
Description	Myoneurin.

ZN471_HUMAN
NC score	0.022405 (rank : 433)	θ value	0.813845 (rank : 161)
Query Neighborhood Hits	331	Target Neighborhood Hits	771	Shared Neighborhood Hits	55
SwissProt Accessions	Q9BX82, O75260, Q8N3V1, Q9P2F1	Gene names	ZNF471, ERP1, KIAA1396
Domain Architecture
Description	Zinc finger protein 471 (EZFIT-related protein 1).

ALEX_HUMAN
NC score	0.021960 (rank : 434)	θ value	4.03905 (rank : 241)
Query Neighborhood Hits	331	Target Neighborhood Hits	361	Shared Neighborhood Hits	19
SwissProt Accessions	P84996	Gene names	GNAS, GNAS1
Domain Architecture	No domain graphic available
Description	Protein ALEX (Alternative gene product encoded by XL-exon).

TSH1_HUMAN
NC score	0.021846 (rank : 435)	θ value	6.88961 (rank : 301)
Query Neighborhood Hits	331	Target Neighborhood Hits	558	Shared Neighborhood Hits	46
SwissProt Accessions	Q6ZSZ6, O60534, Q4LE29, Q53EU4	Gene names	TSHZ1, SDCCAG33, TSH1
Domain Architecture	No domain graphic available
Description	Teashirt homolog 1 (Serologically defined colon cancer antigen 3) (Antigen NY-CO-33).

ZN441_HUMAN
NC score	0.021805 (rank : 436)	θ value	6.88961 (rank : 305)
Query Neighborhood Hits	331	Target Neighborhood Hits	754	Shared Neighborhood Hits	54
SwissProt Accessions	Q8N8Z8	Gene names	ZNF441
Domain Architecture	No domain graphic available
Description	Zinc finger protein 441.

BCL6_MOUSE
NC score	0.021184 (rank : 437)	θ value	8.99809 (rank : 307)
Query Neighborhood Hits	331	Target Neighborhood Hits	913	Shared Neighborhood Hits	60
SwissProt Accessions	P41183, Q61065	Gene names	Bcl6, Bcl-6
Domain Architecture
Description	B-cell lymphoma 6 protein homolog.

BCL6_HUMAN
NC score	0.020902 (rank : 438)	θ value	8.99809 (rank : 306)
Query Neighborhood Hits	331	Target Neighborhood Hits	922	Shared Neighborhood Hits	54
SwissProt Accessions	P41182	Gene names	BCL6, BCL5, LAZ3, ZBTB27, ZNF51
Domain Architecture
Description	B-cell lymphoma 6 protein (BCL-6) (Zinc finger protein 51) (LAZ-3 protein) (BCL-5) (Zinc finger and BTB domain-containing protein 27).

ZNF16_HUMAN
NC score	0.020369 (rank : 439)	θ value	5.27518 (rank : 281)
Query Neighborhood Hits	331	Target Neighborhood Hits	771	Shared Neighborhood Hits	54
SwissProt Accessions	P17020, Q96FG0	Gene names	ZNF16, KOX9
Domain Architecture	No domain graphic available
Description	Zinc finger protein 16 (Zinc finger protein KOX9).

ZN133_HUMAN
NC score	0.020362 (rank : 440)	θ value	1.81305 (rank : 186)
Query Neighborhood Hits	331	Target Neighborhood Hits	784	Shared Neighborhood Hits	56
SwissProt Accessions	P52736, Q9BUV2, Q9H443	Gene names	ZNF133
Domain Architecture
Description	Zinc finger protein 133.

SRCA_HUMAN
NC score	0.019727 (rank : 441)	θ value	4.03905 (rank : 257)
Query Neighborhood Hits	331	Target Neighborhood Hits	380	Shared Neighborhood Hits	18
SwissProt Accessions	Q86TD4	Gene names	SRL
Domain Architecture	No domain graphic available
Description	Sarcalumenin precursor.

CBP_MOUSE
NC score	0.019642 (rank : 442)	θ value	4.03905 (rank : 243)
Query Neighborhood Hits	331	Target Neighborhood Hits	1051	Shared Neighborhood Hits	36
SwissProt Accessions	P45481	Gene names	Crebbp, Cbp
Domain Architecture
Description	CREB-binding protein (EC 2.3.1.48).

ZN442_HUMAN
NC score	0.019340 (rank : 443)	θ value	5.27518 (rank : 278)
Query Neighborhood Hits	331	Target Neighborhood Hits	744	Shared Neighborhood Hits	52
SwissProt Accessions	Q9H7R0	Gene names	ZNF442
Domain Architecture
Description	Zinc finger protein 442.

ZBTB1_HUMAN
NC score	0.018990 (rank : 444)	θ value	8.99809 (rank : 329)
Query Neighborhood Hits	331	Target Neighborhood Hits	805	Shared Neighborhood Hits	51
SwissProt Accessions	Q9Y2K1, Q86SW8	Gene names	ZBTB1, KIAA0997
Domain Architecture
Description	Zinc finger and BTB domain-containing protein 1.

ZBTB1_MOUSE
NC score	0.018879 (rank : 445)	θ value	8.99809 (rank : 330)
Query Neighborhood Hits	331	Target Neighborhood Hits	795	Shared Neighborhood Hits	51
SwissProt Accessions	Q91VL9, Q8CDP7, Q99LD2	Gene names	Zbtb1
Domain Architecture
Description	Zinc finger and BTB domain-containing protein 1.

ZN460_HUMAN
NC score	0.018616 (rank : 446)	θ value	4.03905 (rank : 261)
Query Neighborhood Hits	331	Target Neighborhood Hits	745	Shared Neighborhood Hits	52
SwissProt Accessions	Q14592, Q6VSF8	Gene names	ZNF460, ZNF272
Domain Architecture	No domain graphic available
Description	Zinc finger protein 460 (Zinc finger protein 272) (Zinc finger protein HZF8).

RGS3_MOUSE
NC score	0.017861 (rank : 447)	θ value	1.38821 (rank : 172)
Query Neighborhood Hits	331	Target Neighborhood Hits	1621	Shared Neighborhood Hits	49
SwissProt Accessions	Q9DC04, Q5SRB1, Q5SRB4, Q5SRB8, Q8CEE3, Q8VI25, Q925G9, Q9JL22, Q9JL23, Q9QXA2	Gene names	Rgs3
Domain Architecture
Description	Regulator of G-protein signaling 3 (RGS3) (C2PA).

MARCS_HUMAN
NC score	0.017698 (rank : 448)	θ value	4.03905 (rank : 251)
Query Neighborhood Hits	331	Target Neighborhood Hits	204	Shared Neighborhood Hits	10
SwissProt Accessions	P29966, Q2LA83, Q5TDB7	Gene names	MARCKS, MACS, PRKCSL
Domain Architecture	No domain graphic available
Description	Myristoylated alanine-rich C-kinase substrate (MARCKS) (Protein kinase C substrate, 80 kDa protein, light chain) (PKCSL) (80K-L protein).

ATN1_HUMAN
NC score	0.015710 (rank : 449)	θ value	5.27518 (rank : 262)
Query Neighborhood Hits	331	Target Neighborhood Hits	676	Shared Neighborhood Hits	27
SwissProt Accessions	P54259, Q99495, Q99621, Q9UEK7	Gene names	ATN1, DRPLA
Domain Architecture
Description	Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein).

IF4G3_MOUSE
NC score	0.014499 (rank : 450)	θ value	4.03905 (rank : 249)
Query Neighborhood Hits	331	Target Neighborhood Hits	279	Shared Neighborhood Hits	16
SwissProt Accessions	Q80XI3, Q80Y69, Q8BJ68, Q8BQF3, Q8C6Q3, Q8CIH0	Gene names	Eif4g3
Domain Architecture
Description	Eukaryotic translation initiation factor 4 gamma 3 (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII).

ZN541_HUMAN
NC score	0.013683 (rank : 451)	θ value	5.27518 (rank : 279)
Query Neighborhood Hits	331	Target Neighborhood Hits	203	Shared Neighborhood Hits	14
SwissProt Accessions	Q9H0D2, Q8NDK8	Gene names	ZNF541
Domain Architecture	No domain graphic available
Description	Zinc finger protein 541.

TEP1_HUMAN
NC score	0.013429 (rank : 452)	θ value	0.163984 (rank : 103)
Query Neighborhood Hits	331	Target Neighborhood Hits	371	Shared Neighborhood Hits	2
SwissProt Accessions	Q99973	Gene names	TEP1, TLP1, TP1
Domain Architecture
Description	Telomerase protein component 1 (Telomerase-associated protein 1) (Telomerase protein 1) (p240) (p80 telomerase homolog).

CCD21_MOUSE
NC score	0.012612 (rank : 453)	θ value	5.27518 (rank : 264)
Query Neighborhood Hits	331	Target Neighborhood Hits	1135	Shared Neighborhood Hits	28
SwissProt Accessions	Q8BMK0, Q8BUF1, Q8K0E6	Gene names	Ccdc21
Domain Architecture	No domain graphic available
Description	Coiled-coil domain-containing protein 21.

HIP1R_HUMAN
NC score	0.012548 (rank : 454)	θ value	2.36792 (rank : 194)
Query Neighborhood Hits	331	Target Neighborhood Hits	809	Shared Neighborhood Hits	17
SwissProt Accessions	O75146, Q9UED9	Gene names	HIP1R, HIP12, KIAA0655
Domain Architecture
Description	Huntingtin-interacting protein 1-related protein (Hip1-related) (Hip 12).

SYDM_HUMAN
NC score	0.011470 (rank : 455)	θ value	6.88961 (rank : 300)
Query Neighborhood Hits	331	Target Neighborhood Hits	18	Shared Neighborhood Hits	3
SwissProt Accessions	Q6PI48	Gene names	DARS2
Domain Architecture	No domain graphic available
Description	Aspartyl-tRNA synthetase, mitochondrial precursor (EC 6.1.1.12) (Aspartate--tRNA ligase) (AspRS).

DYXC1_MOUSE
NC score	0.011297 (rank : 456)	θ value	5.27518 (rank : 266)
Query Neighborhood Hits	331	Target Neighborhood Hits	172	Shared Neighborhood Hits	8
SwissProt Accessions	Q8R368	Gene names	Dyx1c1, Ekn1
Domain Architecture
Description	Dyslexia susceptibility 1 candidate gene 1 protein homolog.

CCD41_MOUSE
NC score	0.010910 (rank : 457)	θ value	0.0736092 (rank : 69)
Query Neighborhood Hits	331	Target Neighborhood Hits	1399	Shared Neighborhood Hits	25
SwissProt Accessions	Q9D5R3, Q3U7X7, Q3UX57, Q80VF0	Gene names	Ccdc41
Domain Architecture	No domain graphic available
Description	Coiled-coil domain-containing protein 41.

PDE4D_HUMAN
NC score	0.009859 (rank : 458)	θ value	2.36792 (rank : 202)
Query Neighborhood Hits	331	Target Neighborhood Hits	122	Shared Neighborhood Hits	6
SwissProt Accessions	Q08499, O43433, Q13549, Q13550, Q13551, Q7Z2L8, Q8IV84, Q8IVA9, Q8IVD2, Q8IVD3, Q9HCX7	Gene names	PDE4D
Domain Architecture
Description	cAMP-specific 3',5'-cyclic phosphodiesterase 4D (EC 3.1.4.17) (DPDE3) (PDE43).

SMAL1_HUMAN
NC score	0.009402 (rank : 459)	θ value	4.03905 (rank : 256)
Query Neighborhood Hits	331	Target Neighborhood Hits	174	Shared Neighborhood Hits	10
SwissProt Accessions	Q9NZC9, Q96AY1, Q9NXQ5, Q9UFH3, Q9UI93	Gene names	SMARCAL1, HARP
Domain Architecture	No domain graphic available
Description	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 1) (HepA-related protein) (hHARP).

MLL3_HUMAN
NC score	0.009151 (rank : 460)	θ value	8.99809 (rank : 314)
Query Neighborhood Hits	331	Target Neighborhood Hits	1644	Shared Neighborhood Hits	52
SwissProt Accessions	Q8NEZ4, Q8NC02, Q8NDF6, Q9H9P4, Q9NR13, Q9P222, Q9UDR7	Gene names	MLL3, HALR, KIAA1506
Domain Architecture
Description	Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog (EC 2.1.1.43) (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (Homologous to ALR protein).

F10A4_HUMAN
NC score	0.008858 (rank : 461)	θ value	5.27518 (rank : 267)
Query Neighborhood Hits	331	Target Neighborhood Hits	249	Shared Neighborhood Hits	11
SwissProt Accessions	Q8IZP2	Gene names	FAM10A4
Domain Architecture	No domain graphic available
Description	Protein FAM10A4.

ATRX_HUMAN
NC score	0.008233 (rank : 462)	θ value	5.27518 (rank : 263)
Query Neighborhood Hits	331	Target Neighborhood Hits	842	Shared Neighborhood Hits	26
SwissProt Accessions	P46100, P51068, Q15886, Q59FB5, Q59H31, Q5H9A2, Q5JWI4, Q7Z2J1, Q9H0Z1, Q9NTS3	Gene names	ATRX, RAD54L, XH2
Domain Architecture
Description	Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent helicase ATRX) (X-linked helicase II) (X-linked nuclear protein) (XNP) (Znf- HX).

SDPR_HUMAN
NC score	0.008087 (rank : 463)	θ value	8.99809 (rank : 323)
Query Neighborhood Hits	331	Target Neighborhood Hits	337	Shared Neighborhood Hits	12
SwissProt Accessions	O95810	Gene names	SDPR
Domain Architecture	No domain graphic available
Description	Serum deprivation-response protein (Phosphatidylserine-binding protein) (PS-p68).

MAGE2_HUMAN
NC score	0.007526 (rank : 464)	θ value	3.0926 (rank : 224)
Query Neighborhood Hits	331	Target Neighborhood Hits	43	Shared Neighborhood Hits	2
SwissProt Accessions	Q8TD90	Gene names	MAGEE2, HCA3
Domain Architecture	No domain graphic available
Description	Melanoma-associated antigen E2 (MAGE-E2 antigen) (Hepatocellular carcinoma-associated protein 3).

KCNH8_HUMAN
NC score	0.006807 (rank : 465)	θ value	3.0926 (rank : 219)
Query Neighborhood Hits	331	Target Neighborhood Hits	104	Shared Neighborhood Hits	3
SwissProt Accessions	Q96L42	Gene names	KCNH8
Domain Architecture
Description	Potassium voltage-gated channel subfamily H member 8 (Voltage-gated potassium channel subunit Kv12.1) (Ether-a-go-go-like potassium channel 3) (ELK channel 3) (ELK3) (ELK1) (hElk1).

NIN_MOUSE
NC score	0.006547 (rank : 466)	θ value	3.0926 (rank : 226)
Query Neighborhood Hits	331	Target Neighborhood Hits	1376	Shared Neighborhood Hits	19
SwissProt Accessions	Q61043, Q6ZPM7	Gene names	Nin, Kiaa1565
Domain Architecture	No domain graphic available
Description	Ninein.

SARDH_MOUSE
NC score	0.006524 (rank : 467)	θ value	8.99809 (rank : 321)
Query Neighborhood Hits	331	Target Neighborhood Hits	26	Shared Neighborhood Hits	2
SwissProt Accessions	Q99LB7	Gene names	Sardh
Domain Architecture	No domain graphic available
Description	Sarcosine dehydrogenase, mitochondrial precursor (EC 1.5.99.1) (SarDH).

FOXP4_HUMAN
NC score	0.006433 (rank : 468)	θ value	6.88961 (rank : 286)
Query Neighborhood Hits	331	Target Neighborhood Hits	246	Shared Neighborhood Hits	16
SwissProt Accessions	Q8IVH2, Q96E19	Gene names	FOXP4, FKHLA
Domain Architecture
Description	Forkhead box protein P4 (Fork head-related protein-like A).

TAOK3_HUMAN
NC score	0.006036 (rank : 469)	θ value	0.00665767 (rank : 32)
Query Neighborhood Hits	331	Target Neighborhood Hits	1494	Shared Neighborhood Hits	21
SwissProt Accessions	Q9H2K8, Q658N1, Q8IUM4, Q9HC79, Q9NZM9, Q9UHG7	Gene names	TAOK3, DPK, JIK, KDS, MAP3K18
Domain Architecture	No domain graphic available
Description	Serine/threonine-protein kinase TAO3 (EC 2.7.11.1) (Thousand and one amino acid protein 3) (Jun kinase-inhibitory kinase) (JNK/SAPK- inhibitory kinase) (Dendritic cell-derived protein kinase) (Cutaneous T-cell lymphoma tumor antigen HD-CL-09) (CTCL tumor antigen HD-CL-09) (Kinase from chicken homolog A) (hKFC-A).

HCN4_HUMAN
NC score	0.005947 (rank : 470)	θ value	6.88961 (rank : 288)
Query Neighborhood Hits	331	Target Neighborhood Hits	303	Shared Neighborhood Hits	19
SwissProt Accessions	Q9Y3Q4, Q9UMQ7	Gene names	HCN4
Domain Architecture
Description	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4.

REST_HUMAN
NC score	0.005901 (rank : 471)	θ value	1.38821 (rank : 171)
Query Neighborhood Hits	331	Target Neighborhood Hits	1605	Shared Neighborhood Hits	22
SwissProt Accessions	P30622	Gene names	RSN, CYLN1
Domain Architecture
Description	Restin (Cytoplasmic linker protein 170 alpha-2) (CLIP-170) (Reed- Sternberg intermediate filament-associated protein) (Cytoplasmic linker protein 1).

MYOC_HUMAN
NC score	0.005873 (rank : 472)	θ value	4.03905 (rank : 252)
Query Neighborhood Hits	331	Target Neighborhood Hits	489	Shared Neighborhood Hits	8
SwissProt Accessions	Q99972, O00620, Q7Z6Q9	Gene names	MYOC, GLC1A, TIGR
Domain Architecture
Description	Myocilin precursor (Trabecular meshwork-induced glucocorticoid response protein).

SMCA4_HUMAN
NC score	0.005823 (rank : 473)	θ value	8.99809 (rank : 324)
Query Neighborhood Hits	331	Target Neighborhood Hits	597	Shared Neighborhood Hits	25
SwissProt Accessions	P51532, O95052, Q9HBD3	Gene names	SMARCA4, BRG1, SNF2B, SNF2L4
Domain Architecture
Description	Probable global transcription activator SNF2L4 (EC 3.6.1.-) (ATP- dependent helicase SMARCA4) (SNF2-beta) (BRG-1 protein) (Mitotic growth and transcription activator) (Brahma protein homolog 1) (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4).

UBP36_HUMAN
NC score	0.005498 (rank : 474)	θ value	8.99809 (rank : 326)
Query Neighborhood Hits	331	Target Neighborhood Hits	232	Shared Neighborhood Hits	11
SwissProt Accessions	Q9P275, Q8NDM8, Q9NVC8	Gene names	USP36, KIAA1453
Domain Architecture
Description	Ubiquitin carboxyl-terminal hydrolase 36 (EC 3.1.2.15) (Ubiquitin thioesterase 36) (Ubiquitin-specific-processing protease 36) (Deubiquitinating enzyme 36).

CCNB1_HUMAN
NC score	0.005157 (rank : 475)	θ value	8.99809 (rank : 308)
Query Neighborhood Hits	331	Target Neighborhood Hits	61	Shared Neighborhood Hits	6
SwissProt Accessions	P14635	Gene names	CCNB1, CCNB
Domain Architecture
Description	G2/mitotic-specific cyclin-B1.

PDE4D_MOUSE
NC score	0.005123 (rank : 476)	θ value	8.99809 (rank : 316)
Query Neighborhood Hits	331	Target Neighborhood Hits	98	Shared Neighborhood Hits	3
SwissProt Accessions	Q01063, Q6TRH9, Q8C4Q7, Q8CG05	Gene names	Pde4d
Domain Architecture	No domain graphic available
Description	cAMP-specific 3',5'-cyclic phosphodiesterase 4D (EC 3.1.4.17) (DPDE3).

CCD39_MOUSE
NC score	0.004895 (rank : 477)	θ value	6.88961 (rank : 284)
Query Neighborhood Hits	331	Target Neighborhood Hits	1026	Shared Neighborhood Hits	17
SwissProt Accessions	Q9D5Y1, Q8CDG6	Gene names	Ccdc39, D3Ertd789e
Domain Architecture	No domain graphic available
Description	Coiled-coil domain-containing protein 39.

GOGA3_HUMAN
NC score	0.004792 (rank : 478)	θ value	8.99809 (rank : 309)
Query Neighborhood Hits	331	Target Neighborhood Hits	1317	Shared Neighborhood Hits	25
SwissProt Accessions	Q08378, O43241, Q6P9C7, Q86XW3, Q8TDA9, Q8WZA3	Gene names	GOLGA3
Domain Architecture
Description	Golgin subfamily A member 3 (Golgin-160) (Golgi complex-associated protein of 170 kDa) (GCP170).

GOGA4_HUMAN
NC score	0.004665 (rank : 479)	θ value	5.27518 (rank : 268)
Query Neighborhood Hits	331	Target Neighborhood Hits	2034	Shared Neighborhood Hits	28
SwissProt Accessions	Q13439, Q13270, Q13654, Q14436	Gene names	GOLGA4
Domain Architecture
Description	Golgin subfamily A member 4 (Trans-Golgi p230) (256 kDa golgin) (Golgin-245) (Protein 72.1).

ITPR3_MOUSE
NC score	0.003725 (rank : 480)	θ value	8.99809 (rank : 312)
Query Neighborhood Hits	331	Target Neighborhood Hits	105	Shared Neighborhood Hits	3
SwissProt Accessions	P70227, Q5DWM4, Q8CED5, Q91Z08	Gene names	Itpr3
Domain Architecture	No domain graphic available
Description	Inositol 1,4,5-trisphosphate receptor type 3 (Type 3 inositol 1,4,5- trisphosphate receptor) (Type 3 InsP3 receptor) (IP3 receptor isoform 3) (InsP3R3).

GPVI_MOUSE
NC score	0.002595 (rank : 481)	θ value	8.99809 (rank : 310)
Query Neighborhood Hits	331	Target Neighborhood Hits	90	Shared Neighborhood Hits	2
SwissProt Accessions	P0C191	Gene names	Gp6
Domain Architecture	No domain graphic available
Description	Platelet glycoprotein VI precursor (GPVI).

K1C16_MOUSE
NC score	0.001934 (rank : 482)	θ value	3.0926 (rank : 218)
Query Neighborhood Hits	331	Target Neighborhood Hits	444	Shared Neighborhood Hits	13
SwissProt Accessions	Q9Z2K1	Gene names	Krt16, Krt1-16
Domain Architecture
Description	Keratin, type I cytoskeletal 16 (Cytokeratin-16) (CK-16) (Keratin-16) (K16).

SC10A_HUMAN
NC score	0.001231 (rank : 483)	θ value	8.99809 (rank : 322)
Query Neighborhood Hits	331	Target Neighborhood Hits	116	Shared Neighborhood Hits	3
SwissProt Accessions	Q9Y5Y9	Gene names	SCN10A, PN3
Domain Architecture	No domain graphic available
Description	Sodium channel protein type 10 subunit alpha (Sodium channel protein type X subunit alpha) (Voltage-gated sodium channel subunit alpha Nav1.8) (Peripheral nerve sodium channel 3) (hPN3).

USH2A_MOUSE
NC score	0.000561 (rank : 484)	θ value	4.03905 (rank : 258)
Query Neighborhood Hits	331	Target Neighborhood Hits	626	Shared Neighborhood Hits	11
SwissProt Accessions	Q2QI47, Q9JLP3	Gene names	Ush2A
Domain Architecture	No domain graphic available
Description	Usherin precursor (Usher syndrome type-2A protein homolog) (Usher syndrome type IIa protein homolog).