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Network neighborhood for query Sequence : PKNX1_HUMAN

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PKNX1_HUMAN
SwissProt Accessions	P55347, O00528, Q8IWT7	Gene names	PKNOX1, PREP1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1) (Homeobox protein PREP-1).
Rank Plots	Jump to hits sorted by θ Jump to hits sorted by NC score

Hits sorted by θ

PKNX1_HUMAN
θ value	0 (rank : 1)	NC score	0.999962 (rank : 1)
Query Neighborhood Hits	101	Target Neighborhood Hits	101	Shared Neighborhood Hits	101
SwissProt Accessions	P55347, O00528, Q8IWT7	Gene names	PKNOX1, PREP1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1) (Homeobox protein PREP-1).

PKNX1_MOUSE
θ value	0 (rank : 2)	NC score	0.998234 (rank : 2)
Query Neighborhood Hits	101	Target Neighborhood Hits	103	Shared Neighborhood Hits	94
SwissProt Accessions	O70477	Gene names	Pknox1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1).

PKNX2_MOUSE
θ value	3.4016e-132 (rank : 3)	NC score	0.976506 (rank : 4)
Query Neighborhood Hits	101	Target Neighborhood Hits	197	Shared Neighborhood Hits	86
SwissProt Accessions	Q8BG99, Q8R4B0	Gene names	Pknox2, Prep2
Domain Architecture	No domain graphic available
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

PKNX2_HUMAN
θ value	5.8157e-124 (rank : 4)	NC score	0.983917 (rank : 3)
Query Neighborhood Hits	101	Target Neighborhood Hits	133	Shared Neighborhood Hits	85
SwissProt Accessions	Q96KN3, Q63HL6, Q86XD1	Gene names	PKNOX2, PREP2
Domain Architecture
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

MEIS1_MOUSE
θ value	8.28633e-54 (rank : 5)	NC score	0.925175 (rank : 7)
Query Neighborhood Hits	101	Target Neighborhood Hits	115	Shared Neighborhood Hits	65
SwissProt Accessions	Q60954, Q5SVC8, Q60955, Q8CIL0	Gene names	Meis1
Domain Architecture
Description	Homeobox protein Meis1 (Myeloid ecotropic viral integration site 1).

MEIS2_HUMAN
θ value	8.28633e-54 (rank : 6)	NC score	0.912404 (rank : 9)
Query Neighborhood Hits	101	Target Neighborhood Hits	182	Shared Neighborhood Hits	67
SwissProt Accessions	O14770, Q96KI4, Q96KI5, Q9NRS1, Q9NRS2, Q9NRS3	Gene names	MEIS2, MRG1
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

MEIS2_MOUSE
θ value	8.28633e-54 (rank : 7)	NC score	0.908966 (rank : 10)
Query Neighborhood Hits	101	Target Neighborhood Hits	208	Shared Neighborhood Hits	67
SwissProt Accessions	P97367, O35676, O35677, P97403, P97404	Gene names	Meis2, Mrg1, Stra10
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

MEIS1_HUMAN
θ value	1.08223e-53 (rank : 8)	NC score	0.925100 (rank : 8)
Query Neighborhood Hits	101	Target Neighborhood Hits	115	Shared Neighborhood Hits	65
SwissProt Accessions	O00470	Gene names	MEIS1
Domain Architecture
Description	Homeobox protein Meis1.

MEIS3_MOUSE
θ value	4.54686e-52 (rank : 9)	NC score	0.928489 (rank : 5)
Query Neighborhood Hits	101	Target Neighborhood Hits	118	Shared Neighborhood Hits	68
SwissProt Accessions	P97368, Q99L81	Gene names	Meis3, Mrg2
Domain Architecture
Description	Homeobox protein Meis3 (Meis1-related protein 2).

MEIS3_HUMAN
θ value	1.91031e-50 (rank : 10)	NC score	0.926133 (rank : 6)
Query Neighborhood Hits	101	Target Neighborhood Hits	118	Shared Neighborhood Hits	65
SwissProt Accessions	Q99687, Q6NT73, Q8TC66, Q9NPW2	Gene names	MEIS3, MRG2
Domain Architecture	No domain graphic available
Description	Homeobox protein Meis3 (Meis1-related protein 2).

TF2LX_HUMAN
θ value	4.91457e-14 (rank : 11)	NC score	0.795077 (rank : 12)
Query Neighborhood Hits	101	Target Neighborhood Hits	108	Shared Neighborhood Hits	67
SwissProt Accessions	Q8IUE1	Gene names	TGIF2LX, TGIFLX
Domain Architecture
Description	Homeobox protein TGIF2LX (TGFB-induced factor 2-like protein, X- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the X).

TGIF2_HUMAN
θ value	6.41864e-14 (rank : 12)	NC score	0.764289 (rank : 13)
Query Neighborhood Hits	101	Target Neighborhood Hits	94	Shared Neighborhood Hits	59
SwissProt Accessions	Q9GZN2	Gene names	TGIF2
Domain Architecture
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

TGIF2_MOUSE
θ value	6.41864e-14 (rank : 13)	NC score	0.758412 (rank : 14)
Query Neighborhood Hits	101	Target Neighborhood Hits	127	Shared Neighborhood Hits	62
SwissProt Accessions	Q8C0Y1	Gene names	Tgif2
Domain Architecture	No domain graphic available
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

TF2LY_HUMAN
θ value	1.42992e-13 (rank : 14)	NC score	0.805756 (rank : 11)
Query Neighborhood Hits	101	Target Neighborhood Hits	90	Shared Neighborhood Hits	65
SwissProt Accessions	Q8IUE0	Gene names	TGIF2LY, TGIFLY
Domain Architecture
Description	Homeobox protein TGIF2LY (TGFB-induced factor 2-like protein, Y- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the Y).

TGIF_HUMAN
θ value	3.18553e-13 (rank : 15)	NC score	0.746984 (rank : 16)
Query Neighborhood Hits	101	Target Neighborhood Hits	109	Shared Neighborhood Hits	58
SwissProt Accessions	Q15583, Q6ICR0, Q8N5X9, Q9NRS0	Gene names	TGIF
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

TGIF_MOUSE
θ value	4.16044e-13 (rank : 16)	NC score	0.755676 (rank : 15)
Query Neighborhood Hits	101	Target Neighborhood Hits	125	Shared Neighborhood Hits	63
SwissProt Accessions	P70284, Q921F9, Q99JS3	Gene names	Tgif
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

IRX6_MOUSE
θ value	3.64472e-09 (rank : 17)	NC score	0.578316 (rank : 19)
Query Neighborhood Hits	101	Target Neighborhood Hits	256	Shared Neighborhood Hits	80
SwissProt Accessions	Q9ER75	Gene names	Irx6, Irxb3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

PBX3_HUMAN
θ value	3.64472e-09 (rank : 18)	NC score	0.534829 (rank : 35)
Query Neighborhood Hits	101	Target Neighborhood Hits	306	Shared Neighborhood Hits	85
SwissProt Accessions	P40426, Q96PF9, Q96PG0	Gene names	PBX3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX3_MOUSE
θ value	3.64472e-09 (rank : 19)	NC score	0.534863 (rank : 34)
Query Neighborhood Hits	101	Target Neighborhood Hits	306	Shared Neighborhood Hits	85
SwissProt Accessions	O35317, Q925W2	Gene names	Pbx3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX4_MOUSE
θ value	6.21693e-09 (rank : 20)	NC score	0.560634 (rank : 26)
Query Neighborhood Hits	101	Target Neighborhood Hits	324	Shared Neighborhood Hits	91
SwissProt Accessions	Q99NE9, Q8CFL2, Q99NE8	Gene names	Pbx4
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 4 (Homeobox protein PBX4).

PBX2_HUMAN
θ value	1.38499e-08 (rank : 21)	NC score	0.540409 (rank : 31)
Query Neighborhood Hits	101	Target Neighborhood Hits	350	Shared Neighborhood Hits	93
SwissProt Accessions	P40425	Gene names	PBX2, G17
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2) (Protein G17).

PBX2_MOUSE
θ value	1.38499e-08 (rank : 22)	NC score	0.540541 (rank : 30)
Query Neighborhood Hits	101	Target Neighborhood Hits	341	Shared Neighborhood Hits	93
SwissProt Accessions	O35984	Gene names	Pbx2
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2).

IRX6_HUMAN
θ value	1.80886e-08 (rank : 23)	NC score	0.577305 (rank : 20)
Query Neighborhood Hits	101	Target Neighborhood Hits	262	Shared Neighborhood Hits	77
SwissProt Accessions	P78412, Q7Z2K0	Gene names	IRX6, IRX7, IRXB3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

PBX1_HUMAN
θ value	1.80886e-08 (rank : 24)	NC score	0.537482 (rank : 32)
Query Neighborhood Hits	101	Target Neighborhood Hits	317	Shared Neighborhood Hits	93
SwissProt Accessions	P40424	Gene names	PBX1, PRL
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1) (Homeobox protein PRL).

PBX1_MOUSE
θ value	1.80886e-08 (rank : 25)	NC score	0.537482 (rank : 33)
Query Neighborhood Hits	101	Target Neighborhood Hits	317	Shared Neighborhood Hits	93
SwissProt Accessions	P41778	Gene names	Pbx1, Pbx-1
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1).

IRX2_MOUSE
θ value	2.36244e-08 (rank : 26)	NC score	0.567107 (rank : 25)
Query Neighborhood Hits	101	Target Neighborhood Hits	264	Shared Neighborhood Hits	78
SwissProt Accessions	P81066, O55121, Q9ERN1	Gene names	Irx2, Irxa2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

IRX1_HUMAN
θ value	3.08544e-08 (rank : 27)	NC score	0.579572 (rank : 17)
Query Neighborhood Hits	101	Target Neighborhood Hits	285	Shared Neighborhood Hits	82
SwissProt Accessions	P78414, Q7Z2F8, Q8N312	Gene names	IRX1, IRXA1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

IRX1_MOUSE
θ value	3.08544e-08 (rank : 28)	NC score	0.578616 (rank : 18)
Query Neighborhood Hits	101	Target Neighborhood Hits	269	Shared Neighborhood Hits	82
SwissProt Accessions	P81068, O55120, Q9JLL6	Gene names	Irx1, Irxa1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

IRX4_MOUSE
θ value	3.08544e-08 (rank : 29)	NC score	0.571955 (rank : 24)
Query Neighborhood Hits	101	Target Neighborhood Hits	286	Shared Neighborhood Hits	79
SwissProt Accessions	Q9QY61	Gene names	Irx4, Irxa3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

IRX4_HUMAN
θ value	5.26297e-08 (rank : 30)	NC score	0.575351 (rank : 22)
Query Neighborhood Hits	101	Target Neighborhood Hits	276	Shared Neighborhood Hits	78
SwissProt Accessions	P78413, Q9UHR2	Gene names	IRX4, IRXA3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

IRX5_HUMAN
θ value	5.26297e-08 (rank : 31)	NC score	0.557554 (rank : 27)
Query Neighborhood Hits	101	Target Neighborhood Hits	362	Shared Neighborhood Hits	78
SwissProt Accessions	P78411, P78416, Q7Z2E1	Gene names	IRX5, IRX2A, IRXB2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2) (IRX-2A).

IRX5_MOUSE
θ value	5.26297e-08 (rank : 32)	NC score	0.554601 (rank : 28)
Query Neighborhood Hits	101	Target Neighborhood Hits	324	Shared Neighborhood Hits	75
SwissProt Accessions	Q9JKQ4, Q80WV4, Q9JLL5	Gene names	Irx5, Irxb2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2).

IRX3_HUMAN
θ value	6.87365e-08 (rank : 33)	NC score	0.575259 (rank : 23)
Query Neighborhood Hits	101	Target Neighborhood Hits	342	Shared Neighborhood Hits	78
SwissProt Accessions	P78415, Q7Z4A4, Q7Z4A5, Q8IVC6	Gene names	IRX3, IRXB1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

IRX3_MOUSE
θ value	6.87365e-08 (rank : 34)	NC score	0.576079 (rank : 21)
Query Neighborhood Hits	101	Target Neighborhood Hits	303	Shared Neighborhood Hits	77
SwissProt Accessions	P81067	Gene names	Irx3, Irxb1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

IRX2_HUMAN
θ value	8.97725e-08 (rank : 35)	NC score	0.551289 (rank : 29)
Query Neighborhood Hits	101	Target Neighborhood Hits	358	Shared Neighborhood Hits	82
SwissProt Accessions	Q9BZI1, Q7Z2I7	Gene names	IRX2, IRXA2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

SIX5_MOUSE
θ value	7.1131e-05 (rank : 36)	NC score	0.375944 (rank : 45)
Query Neighborhood Hits	101	Target Neighborhood Hits	354	Shared Neighborhood Hits	83
SwissProt Accessions	P70178	Gene names	Six5, Dmahp
Domain Architecture
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein homolog).

LHX9_HUMAN
θ value	9.29e-05 (rank : 37)	NC score	0.111169 (rank : 56)
Query Neighborhood Hits	101	Target Neighborhood Hits	444	Shared Neighborhood Hits	72
SwissProt Accessions	Q9NQ69, Q5VUE3, Q9BYU6, Q9NQ70	Gene names	LHX9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

SIX5_HUMAN
θ value	0.00020696 (rank : 38)	NC score	0.377823 (rank : 44)
Query Neighborhood Hits	101	Target Neighborhood Hits	386	Shared Neighborhood Hits	93
SwissProt Accessions	Q8N196	Gene names	SIX5, DMAHP
Domain Architecture	No domain graphic available
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein).

SIX2_HUMAN
θ value	0.000270298 (rank : 39)	NC score	0.426926 (rank : 36)
Query Neighborhood Hits	101	Target Neighborhood Hits	345	Shared Neighborhood Hits	89
SwissProt Accessions	Q9NPC8, Q9BXH7	Gene names	SIX2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

SIX2_MOUSE
θ value	0.000270298 (rank : 40)	NC score	0.426257 (rank : 37)
Query Neighborhood Hits	101	Target Neighborhood Hits	376	Shared Neighborhood Hits	93
SwissProt Accessions	Q62232, P70179	Gene names	Six2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

SIX1_HUMAN
θ value	0.00035302 (rank : 41)	NC score	0.419186 (rank : 39)
Query Neighborhood Hits	101	Target Neighborhood Hits	343	Shared Neighborhood Hits	91
SwissProt Accessions	Q15475, Q96H64	Gene names	SIX1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

SIX1_MOUSE
θ value	0.00035302 (rank : 42)	NC score	0.419656 (rank : 38)
Query Neighborhood Hits	101	Target Neighborhood Hits	341	Shared Neighborhood Hits	91
SwissProt Accessions	Q62231, Q8CIL7	Gene names	Six1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

SIX4_HUMAN
θ value	0.00035302 (rank : 43)	NC score	0.374895 (rank : 46)
Query Neighborhood Hits	101	Target Neighborhood Hits	342	Shared Neighborhood Hits	88
SwissProt Accessions	Q9UIU6	Gene names	SIX4
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4).

LHX9_MOUSE
θ value	0.000602161 (rank : 44)	NC score	0.107209 (rank : 59)
Query Neighborhood Hits	101	Target Neighborhood Hits	445	Shared Neighborhood Hits	72
SwissProt Accessions	Q9WUH2, Q9QYQ5, Q9QYQ6, Q9QZ00, Q9WU44	Gene names	Lhx9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

SIX6_MOUSE
θ value	0.000602161 (rank : 45)	NC score	0.400767 (rank : 40)
Query Neighborhood Hits	101	Target Neighborhood Hits	267	Shared Neighborhood Hits	89
SwissProt Accessions	Q9QZ28, O88423	Gene names	Six6, Optx2, Six9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Six9 protein).

SIX3_HUMAN
θ value	0.00102713 (rank : 46)	NC score	0.395555 (rank : 42)
Query Neighborhood Hits	101	Target Neighborhood Hits	285	Shared Neighborhood Hits	86
SwissProt Accessions	O95343	Gene names	SIX3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX3_MOUSE
θ value	0.00102713 (rank : 47)	NC score	0.395505 (rank : 43)
Query Neighborhood Hits	101	Target Neighborhood Hits	289	Shared Neighborhood Hits	86
SwissProt Accessions	Q62233, P70176, P70177	Gene names	Six3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX6_HUMAN
θ value	0.00102713 (rank : 48)	NC score	0.400062 (rank : 41)
Query Neighborhood Hits	101	Target Neighborhood Hits	269	Shared Neighborhood Hits	88
SwissProt Accessions	O95475, Q9P1X8	Gene names	SIX6, OPTX2, SIX9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Homeodomain protein OPTX2).

SIX4_MOUSE
θ value	0.00298849 (rank : 49)	NC score	0.373390 (rank : 47)
Query Neighborhood Hits	101	Target Neighborhood Hits	341	Shared Neighborhood Hits	88
SwissProt Accessions	Q61321, Q61322, Q61323	Gene names	Six4, Arec3
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4) (Skeletal muscle-specific ARE-binding protein AREC3).

ZHX3_MOUSE
θ value	0.0563607 (rank : 50)	NC score	0.151110 (rank : 50)
Query Neighborhood Hits	101	Target Neighborhood Hits	321	Shared Neighborhood Hits	73
SwissProt Accessions	Q8C0Q2, Q80U14	Gene names	Zhx3, Kiaa0395, Tix1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

AATK_HUMAN
θ value	0.21417 (rank : 51)	NC score	0.005179 (rank : 231)
Query Neighborhood Hits	101	Target Neighborhood Hits	1243	Shared Neighborhood Hits	8
SwissProt Accessions	Q6ZMQ8, O75136, Q6ZN31, Q86X28	Gene names	AATK, KIAA0641
Domain Architecture	No domain graphic available
Description	Apoptosis-associated tyrosine-protein kinase (EC 2.7.10.2) (AATYK) (Brain apoptosis-associated tyrosine kinase) (CDK5-binding protein) (p35-binding protein) (p35BP).

CUTL2_HUMAN
θ value	0.279714 (rank : 52)	NC score	0.121635 (rank : 54)
Query Neighborhood Hits	101	Target Neighborhood Hits	906	Shared Neighborhood Hits	58
SwissProt Accessions	O14529	Gene names	CUTL2, KIAA0293
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

LHX2_MOUSE
θ value	0.279714 (rank : 53)	NC score	0.104614 (rank : 60)
Query Neighborhood Hits	101	Target Neighborhood Hits	431	Shared Neighborhood Hits	74
SwissProt Accessions	Q9Z0S2	Gene names	Lhx2
Domain Architecture
Description	LIM/homeobox protein Lhx2.

EMX2_HUMAN
θ value	0.365318 (rank : 54)	NC score	0.084426 (rank : 70)
Query Neighborhood Hits	101	Target Neighborhood Hits	341	Shared Neighborhood Hits	77
SwissProt Accessions	Q04743, Q96NN8, Q9BQF4	Gene names	EMX2
Domain Architecture
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

EMX2_MOUSE
θ value	0.365318 (rank : 55)	NC score	0.084775 (rank : 69)
Query Neighborhood Hits	101	Target Neighborhood Hits	340	Shared Neighborhood Hits	77
SwissProt Accessions	Q04744, Q80UE7	Gene names	Emx2, Emx-2
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

OTX2_MOUSE
θ value	0.47712 (rank : 56)	NC score	0.058769 (rank : 159)
Query Neighborhood Hits	101	Target Neighborhood Hits	345	Shared Neighborhood Hits	62
SwissProt Accessions	P80206	Gene names	Otx2, Otx-2
Domain Architecture
Description	Homeobox protein OTX2.

SOX11_MOUSE
θ value	0.47712 (rank : 57)	NC score	0.016864 (rank : 229)
Query Neighborhood Hits	101	Target Neighborhood Hits	96	Shared Neighborhood Hits	4
SwissProt Accessions	Q7M6Y2, O35178, O89036, Q04889, Q80XF0	Gene names	Sox11, Sox-11
Domain Architecture	No domain graphic available
Description	Transcription factor SOX-11.

OTX2_HUMAN
θ value	0.62314 (rank : 58)	NC score	0.057615 (rank : 167)
Query Neighborhood Hits	101	Target Neighborhood Hits	341	Shared Neighborhood Hits	59
SwissProt Accessions	P32243, Q6GTV3, Q9HAW3, Q9P2R1	Gene names	OTX2
Domain Architecture
Description	Homeobox protein OTX2.

CUTL2_MOUSE
θ value	0.813845 (rank : 59)	NC score	0.129641 (rank : 53)
Query Neighborhood Hits	101	Target Neighborhood Hits	771	Shared Neighborhood Hits	58
SwissProt Accessions	P70298	Gene names	Cutl2
Domain Architecture
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

HLX1_HUMAN
θ value	0.813845 (rank : 60)	NC score	0.089737 (rank : 68)
Query Neighborhood Hits	101	Target Neighborhood Hits	370	Shared Neighborhood Hits	75
SwissProt Accessions	Q14774, Q15988	Gene names	HLX1
Domain Architecture
Description	Homeobox protein HLX1 (Homeobox protein HB24).

HLX1_MOUSE
θ value	0.813845 (rank : 61)	NC score	0.084359 (rank : 71)
Query Neighborhood Hits	101	Target Neighborhood Hits	362	Shared Neighborhood Hits	72
SwissProt Accessions	Q61670	Gene names	Hlx1, Hlx
Domain Architecture
Description	Homeobox protein HLX1.

HXA9_HUMAN
θ value	1.06291 (rank : 62)	NC score	0.071948 (rank : 97)
Query Neighborhood Hits	101	Target Neighborhood Hits	332	Shared Neighborhood Hits	72
SwissProt Accessions	P31269, O43369, O43429, Q99820	Gene names	HOXA9, HOX1G
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1G).

HXA9_MOUSE
θ value	1.06291 (rank : 63)	NC score	0.071943 (rank : 98)
Query Neighborhood Hits	101	Target Neighborhood Hits	334	Shared Neighborhood Hits	72
SwissProt Accessions	P09631, O70154, O70155	Gene names	Hoxa9, Hox-1.7, Hoxa-9
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1.7).

PITX3_HUMAN
θ value	1.06291 (rank : 64)	NC score	0.109638 (rank : 57)
Query Neighborhood Hits	101	Target Neighborhood Hits	366	Shared Neighborhood Hits	84
SwissProt Accessions	O75364	Gene names	PITX3, PTX3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

PITX3_MOUSE
θ value	1.06291 (rank : 65)	NC score	0.108815 (rank : 58)
Query Neighborhood Hits	101	Target Neighborhood Hits	380	Shared Neighborhood Hits	85
SwissProt Accessions	O35160	Gene names	Pitx3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

ZHX1_HUMAN
θ value	1.06291 (rank : 66)	NC score	0.102433 (rank : 61)
Query Neighborhood Hits	101	Target Neighborhood Hits	307	Shared Neighborhood Hits	61
SwissProt Accessions	Q9UKY1, Q8IWD8	Gene names	ZHX1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

CUTL1_MOUSE
θ value	1.38821 (rank : 67)	NC score	0.066145 (rank : 129)
Query Neighborhood Hits	101	Target Neighborhood Hits	1620	Shared Neighborhood Hits	62
SwissProt Accessions	P53564, O08994, P70301, Q571L6, Q91ZD2	Gene names	Cutl1, Cux, Cux1, Kiaa4047
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP) (Homeobox protein Cux).

LHX2_HUMAN
θ value	1.38821 (rank : 68)	NC score	0.101757 (rank : 62)
Query Neighborhood Hits	101	Target Neighborhood Hits	432	Shared Neighborhood Hits	75
SwissProt Accessions	P50458, O95860, Q8N1Z3	Gene names	LHX2, LH2
Domain Architecture
Description	LIM/homeobox protein Lhx2 (Homeobox protein LH-2).

OTX1_HUMAN
θ value	1.81305 (rank : 69)	NC score	0.060113 (rank : 149)
Query Neighborhood Hits	101	Target Neighborhood Hits	379	Shared Neighborhood Hits	67
SwissProt Accessions	P32242, Q53TG6	Gene names	OTX1
Domain Architecture
Description	Homeobox protein OTX1.

ZHX1_MOUSE
θ value	1.81305 (rank : 70)	NC score	0.099813 (rank : 63)
Query Neighborhood Hits	101	Target Neighborhood Hits	334	Shared Neighborhood Hits	58
SwissProt Accessions	P70121, Q8BQ68, Q8C6T4, Q8CJG3	Gene names	Zhx1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

CUTL1_HUMAN
θ value	2.36792 (rank : 71)	NC score	0.060611 (rank : 144)
Query Neighborhood Hits	101	Target Neighborhood Hits	1574	Shared Neighborhood Hits	60
SwissProt Accessions	P39880, Q6NYH4, Q9UEV5	Gene names	CUTL1
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP).

HNF6_HUMAN
θ value	2.36792 (rank : 72)	NC score	0.146851 (rank : 51)
Query Neighborhood Hits	101	Target Neighborhood Hits	127	Shared Neighborhood Hits	42
SwissProt Accessions	Q9UBC0, Q99744, Q9UMR6	Gene names	ONECUT1, HNF6, HNF6A
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

ZHX3_HUMAN
θ value	2.36792 (rank : 73)	NC score	0.121557 (rank : 55)
Query Neighborhood Hits	101	Target Neighborhood Hits	331	Shared Neighborhood Hits	66
SwissProt Accessions	Q9H4I2, O43145	Gene names	ZHX3, KIAA0395, TIX1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

CBP_HUMAN
θ value	3.0926 (rank : 74)	NC score	0.014799 (rank : 230)
Query Neighborhood Hits	101	Target Neighborhood Hits	941	Shared Neighborhood Hits	14
SwissProt Accessions	Q92793, O00147, Q16376	Gene names	CREBBP, CBP
Domain Architecture
Description	CREB-binding protein (EC 2.3.1.48).

DLX4_MOUSE
θ value	3.0926 (rank : 75)	NC score	0.073812 (rank : 84)
Query Neighborhood Hits	101	Target Neighborhood Hits	352	Shared Neighborhood Hits	74
SwissProt Accessions	P70436, Q3UM51, Q8R4I3	Gene names	Dlx4, Dlx7
Domain Architecture
Description	Homeobox protein DLX-4 (DLX-7).

EMX1_HUMAN
θ value	3.0926 (rank : 76)	NC score	0.068471 (rank : 114)
Query Neighborhood Hits	101	Target Neighborhood Hits	336	Shared Neighborhood Hits	77
SwissProt Accessions	Q04741, Q86XB0	Gene names	EMX1
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty spiracles- like protein 1).

HXB13_MOUSE
θ value	3.0926 (rank : 77)	NC score	0.071914 (rank : 99)
Query Neighborhood Hits	101	Target Neighborhood Hits	384	Shared Neighborhood Hits	76
SwissProt Accessions	P70321, Q80Y12	Gene names	Hoxb13
Domain Architecture
Description	Homeobox protein Hox-B13.

HXD10_HUMAN
θ value	3.0926 (rank : 78)	NC score	0.074063 (rank : 83)
Query Neighborhood Hits	101	Target Neighborhood Hits	392	Shared Neighborhood Hits	74
SwissProt Accessions	P28358	Gene names	HOXD10, HOX4D
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4D) (Hox-4E).

HXD10_MOUSE
θ value	3.0926 (rank : 79)	NC score	0.074499 (rank : 82)
Query Neighborhood Hits	101	Target Neighborhood Hits	392	Shared Neighborhood Hits	74
SwissProt Accessions	P28359, Q91WU9	Gene names	Hoxd10, Hox-4.5, Hoxd-10
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4.5) (Hox-5.3).

ONEC2_HUMAN
θ value	3.0926 (rank : 80)	NC score	0.162992 (rank : 48)
Query Neighborhood Hits	101	Target Neighborhood Hits	115	Shared Neighborhood Hits	37
SwissProt Accessions	O95948	Gene names	ONECUT2
Domain Architecture
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

ONEC2_MOUSE
θ value	3.0926 (rank : 81)	NC score	0.162150 (rank : 49)
Query Neighborhood Hits	101	Target Neighborhood Hits	123	Shared Neighborhood Hits	38
SwissProt Accessions	Q6XBJ3	Gene names	Onecut2, Oc2
Domain Architecture	No domain graphic available
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

OTX1_MOUSE
θ value	3.0926 (rank : 82)	NC score	0.059825 (rank : 151)
Query Neighborhood Hits	101	Target Neighborhood Hits	372	Shared Neighborhood Hits	68
SwissProt Accessions	P80205	Gene names	Otx1, Otx-1
Domain Architecture
Description	Homeobox protein OTX1.

VGLL4_HUMAN
θ value	3.0926 (rank : 83)	NC score	0.026650 (rank : 227)
Query Neighborhood Hits	101	Target Neighborhood Hits	28	Shared Neighborhood Hits	4
SwissProt Accessions	Q14135, Q7L5V0, Q9BQ78	Gene names	VGLL4, KIAA0121
Domain Architecture	No domain graphic available
Description	Transcription cofactor vestigial-like protein 4 (Vgl-4).

HNF6_MOUSE
θ value	4.03905 (rank : 84)	NC score	0.142494 (rank : 52)
Query Neighborhood Hits	101	Target Neighborhood Hits	124	Shared Neighborhood Hits	43
SwissProt Accessions	O08755	Gene names	Onecut1, Hnf6, Hnf6a
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

HXA13_HUMAN
θ value	4.03905 (rank : 85)	NC score	0.071979 (rank : 96)
Query Neighborhood Hits	101	Target Neighborhood Hits	353	Shared Neighborhood Hits	77
SwissProt Accessions	P31271, O43371	Gene names	HOXA13, HOX1J
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1J).

HXA13_MOUSE
θ value	4.03905 (rank : 86)	NC score	0.072398 (rank : 94)
Query Neighborhood Hits	101	Target Neighborhood Hits	351	Shared Neighborhood Hits	77
SwissProt Accessions	Q62424	Gene names	Hoxa13, Hox-1.10
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1.10).

HXB13_HUMAN
θ value	5.27518 (rank : 87)	NC score	0.076870 (rank : 78)
Query Neighborhood Hits	101	Target Neighborhood Hits	377	Shared Neighborhood Hits	77
SwissProt Accessions	Q92826, Q96QM4, Q99810	Gene names	HOXB13
Domain Architecture
Description	Homeobox protein Hox-B13.

HXB9_HUMAN
θ value	5.27518 (rank : 88)	NC score	0.058825 (rank : 157)
Query Neighborhood Hits	101	Target Neighborhood Hits	344	Shared Neighborhood Hits	63
SwissProt Accessions	P17482, Q9H1I1	Gene names	HOXB9, HOX2E
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5).

HXB9_MOUSE
θ value	5.27518 (rank : 89)	NC score	0.059335 (rank : 153)
Query Neighborhood Hits	101	Target Neighborhood Hits	344	Shared Neighborhood Hits	63
SwissProt Accessions	P20615	Gene names	Hoxb9, Hox-2.5, Hoxb-9
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2.5).

HXC10_HUMAN
θ value	5.27518 (rank : 90)	NC score	0.070240 (rank : 106)
Query Neighborhood Hits	101	Target Neighborhood Hits	417	Shared Neighborhood Hits	74
SwissProt Accessions	Q9NYD6, O15219, O15220, Q9BVD5	Gene names	HOXC10
Domain Architecture
Description	Homeobox protein Hox-C10.

HXC10_MOUSE
θ value	5.27518 (rank : 91)	NC score	0.071257 (rank : 103)
Query Neighborhood Hits	101	Target Neighborhood Hits	417	Shared Neighborhood Hits	75
SwissProt Accessions	P31257, P31312, Q7TMT7	Gene names	Hoxc10, Hox-3.6, Hoxc-10
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C10 (Hox-3.6).

HXC9_HUMAN
θ value	5.27518 (rank : 92)	NC score	0.065437 (rank : 132)
Query Neighborhood Hits	101	Target Neighborhood Hits	339	Shared Neighborhood Hits	68
SwissProt Accessions	P31274, Q9H1I0	Gene names	HOXC9, HOX3B
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3B).

HXC9_MOUSE
θ value	5.27518 (rank : 93)	NC score	0.065416 (rank : 133)
Query Neighborhood Hits	101	Target Neighborhood Hits	338	Shared Neighborhood Hits	68
SwissProt Accessions	P09633	Gene names	Hoxc9, Hox-3.2, Hoxc-9
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3.2).

HXD9_HUMAN
θ value	5.27518 (rank : 94)	NC score	0.061332 (rank : 140)
Query Neighborhood Hits	101	Target Neighborhood Hits	352	Shared Neighborhood Hits	68
SwissProt Accessions	P28356	Gene names	HOXD9, HOX4C
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2).

HXD9_MOUSE
θ value	5.27518 (rank : 95)	NC score	0.060651 (rank : 143)
Query Neighborhood Hits	101	Target Neighborhood Hits	359	Shared Neighborhood Hits	68
SwissProt Accessions	P28357, Q3UYS2	Gene names	Hoxd9, Hox-4.4, Hoxd-9
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4.4) (Hox-5.2).

MTMR3_HUMAN
θ value	5.27518 (rank : 96)	NC score	0.004466 (rank : 232)
Query Neighborhood Hits	101	Target Neighborhood Hits	163	Shared Neighborhood Hits	3
SwissProt Accessions	Q13615, Q9NYN5, Q9NYN6, Q9UDX6, Q9UEG3	Gene names	MTMR3, KIAA0371, ZFYVE10
Domain Architecture
Description	Myotubularin-related protein 3 (EC 3.1.3.48) (FYVE domain-containing dual specificity protein phosphatase 1) (FYVE-DSP1) (Zinc finger FYVE domain-containing protein 10).

PRRXL_MOUSE
θ value	5.27518 (rank : 97)	NC score	0.077313 (rank : 77)
Query Neighborhood Hits	101	Target Neighborhood Hits	350	Shared Neighborhood Hits	79
SwissProt Accessions	Q8BYH0, Q8K3F8	Gene names	Prrxl1, Drg11
Domain Architecture	No domain graphic available
Description	Paired-related homeobox protein-like 1 (Dorsal root ganglion 11) (Homeobox protein DRG11).

DLX4_HUMAN
θ value	6.88961 (rank : 98)	NC score	0.067902 (rank : 119)
Query Neighborhood Hits	101	Target Neighborhood Hits	350	Shared Neighborhood Hits	74
SwissProt Accessions	Q92988, O60480, Q13265, Q6PJK0, Q9HBE0	Gene names	DLX4, BP1, DLX7, DLX8
Domain Architecture	No domain graphic available
Description	Homeobox protein DLX-4 (DLX-7) (DLX-8) (Beta protein 1).

PITX1_HUMAN
θ value	8.99809 (rank : 99)	NC score	0.073397 (rank : 91)
Query Neighborhood Hits	101	Target Neighborhood Hits	353	Shared Neighborhood Hits	75
SwissProt Accessions	P78337, O14677, O60425, Q9BTI5	Gene names	PITX1, BFT, PTX1
Domain Architecture
Description	Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot).

PO2F1_HUMAN
θ value	8.99809 (rank : 100)	NC score	0.025731 (rank : 228)
Query Neighborhood Hits	101	Target Neighborhood Hits	426	Shared Neighborhood Hits	60
SwissProt Accessions	P14859, Q5TBT7, Q6PK46, Q8NEU9, Q9BPV1	Gene names	POU2F1, OCT1, OTF1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

PRRX2_HUMAN
θ value	8.99809 (rank : 101)	NC score	0.058157 (rank : 163)
Query Neighborhood Hits	101	Target Neighborhood Hits	348	Shared Neighborhood Hits	69
SwissProt Accessions	Q99811, Q9UIB3	Gene names	PRRX2, PMX2, PRX2
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Paired-related homeobox protein 2).

ALX3_HUMAN
θ value	θ > 10 (rank : 102)	NC score	0.073513 (rank : 87)
Query Neighborhood Hits	101	Target Neighborhood Hits	380	Shared Neighborhood Hits	78
SwissProt Accessions	O95076, O95075	Gene names	ALX3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

ALX3_MOUSE
θ value	θ > 10 (rank : 103)	NC score	0.073716 (rank : 85)
Query Neighborhood Hits	101	Target Neighborhood Hits	386	Shared Neighborhood Hits	77
SwissProt Accessions	O70137	Gene names	Alx3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

ALX4_HUMAN
θ value	θ > 10 (rank : 104)	NC score	0.066957 (rank : 124)
Query Neighborhood Hits	101	Target Neighborhood Hits	394	Shared Neighborhood Hits	76
SwissProt Accessions	Q9H161, Q96JN7, Q9H198, Q9HAY9	Gene names	ALX4, KIAA1788
Domain Architecture
Description	Homeobox protein aristaless-like 4.

ALX4_MOUSE
θ value	θ > 10 (rank : 105)	NC score	0.070489 (rank : 105)
Query Neighborhood Hits	101	Target Neighborhood Hits	369	Shared Neighborhood Hits	81
SwissProt Accessions	O35137	Gene names	Alx4
Domain Architecture
Description	Homeobox protein aristaless-like 4 (ALX-4).

ARX_HUMAN
θ value	θ > 10 (rank : 106)	NC score	0.051456 (rank : 210)
Query Neighborhood Hits	101	Target Neighborhood Hits	401	Shared Neighborhood Hits	68
SwissProt Accessions	Q96QS3	Gene names	ARX
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

ARX_MOUSE
θ value	θ > 10 (rank : 107)	NC score	0.051251 (rank : 213)
Query Neighborhood Hits	101	Target Neighborhood Hits	398	Shared Neighborhood Hits	68
SwissProt Accessions	O35085, Q9QYT4	Gene names	Arx
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

BARX2_HUMAN
θ value	θ > 10 (rank : 108)	NC score	0.071275 (rank : 102)
Query Neighborhood Hits	101	Target Neighborhood Hits	387	Shared Neighborhood Hits	72
SwissProt Accessions	Q9UMQ3, O43518	Gene names	BARX2
Domain Architecture
Description	Homeobox protein BarH-like 2.

BARX2_MOUSE
θ value	θ > 10 (rank : 109)	NC score	0.066820 (rank : 125)
Query Neighborhood Hits	101	Target Neighborhood Hits	335	Shared Neighborhood Hits	70
SwissProt Accessions	O08686	Gene names	Barx2
Domain Architecture
Description	Homeobox protein BarH-like 2.

BSH_MOUSE
θ value	θ > 10 (rank : 110)	NC score	0.081775 (rank : 75)
Query Neighborhood Hits	101	Target Neighborhood Hits	349	Shared Neighborhood Hits	77
SwissProt Accessions	Q810B3	Gene names	Bsx
Domain Architecture	No domain graphic available
Description	Brain-specific homeobox protein homolog.

CART1_HUMAN
θ value	θ > 10 (rank : 111)	NC score	0.054801 (rank : 193)
Query Neighborhood Hits	101	Target Neighborhood Hits	348	Shared Neighborhood Hits	75
SwissProt Accessions	Q15699, Q546C8, Q96FH4	Gene names	CART1
Domain Architecture
Description	Cartilage homeoprotein 1 (CART-1).

CART1_MOUSE
θ value	θ > 10 (rank : 112)	NC score	0.052779 (rank : 204)
Query Neighborhood Hits	101	Target Neighborhood Hits	344	Shared Neighborhood Hits	72
SwissProt Accessions	Q8C8B0, Q8C370	Gene names	Cart1
Domain Architecture	No domain graphic available
Description	Cartilage homeoprotein 1 (CART-1).

CDX1_MOUSE
θ value	θ > 10 (rank : 113)	NC score	0.050499 (rank : 220)
Query Neighborhood Hits	101	Target Neighborhood Hits	379	Shared Neighborhood Hits	59
SwissProt Accessions	P18111, Q8VCF7	Gene names	Cdx1, Cdx-1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

CDX4_HUMAN
θ value	θ > 10 (rank : 114)	NC score	0.050572 (rank : 219)
Query Neighborhood Hits	101	Target Neighborhood Hits	366	Shared Neighborhood Hits	71
SwissProt Accessions	O14627, Q5JS20	Gene names	CDX4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

CDX4_MOUSE
θ value	θ > 10 (rank : 115)	NC score	0.053762 (rank : 199)
Query Neighborhood Hits	101	Target Neighborhood Hits	378	Shared Neighborhood Hits	69
SwissProt Accessions	Q07424	Gene names	Cdx4, Cdx-4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

CRX_HUMAN
θ value	θ > 10 (rank : 116)	NC score	0.056745 (rank : 172)
Query Neighborhood Hits	101	Target Neighborhood Hits	360	Shared Neighborhood Hits	66
SwissProt Accessions	O43186	Gene names	CRX, CORD2
Domain Architecture
Description	Cone-rod homeobox protein.

CRX_MOUSE
θ value	θ > 10 (rank : 117)	NC score	0.053253 (rank : 201)
Query Neighborhood Hits	101	Target Neighborhood Hits	359	Shared Neighborhood Hits	62
SwissProt Accessions	O54751	Gene names	Crx
Domain Architecture
Description	Cone-rod homeobox protein.

DBX1_MOUSE
θ value	θ > 10 (rank : 118)	NC score	0.055085 (rank : 187)
Query Neighborhood Hits	101	Target Neighborhood Hits	346	Shared Neighborhood Hits	66
SwissProt Accessions	P52950	Gene names	Dbx1, Dbx
Domain Architecture
Description	Homeobox protein DBX1.

DLX1_HUMAN
θ value	θ > 10 (rank : 119)	NC score	0.069414 (rank : 109)
Query Neighborhood Hits	101	Target Neighborhood Hits	343	Shared Neighborhood Hits	80
SwissProt Accessions	P56177, Q53ZU4, Q8IYB2	Gene names	DLX1
Domain Architecture
Description	Homeobox protein DLX-1.

DLX1_MOUSE
θ value	θ > 10 (rank : 120)	NC score	0.069428 (rank : 108)
Query Neighborhood Hits	101	Target Neighborhood Hits	343	Shared Neighborhood Hits	80
SwissProt Accessions	Q64317	Gene names	Dlx1
Domain Architecture
Description	Homeobox protein DLX-1.

DLX2_HUMAN
θ value	θ > 10 (rank : 121)	NC score	0.056454 (rank : 180)
Query Neighborhood Hits	101	Target Neighborhood Hits	355	Shared Neighborhood Hits	76
SwissProt Accessions	Q07687	Gene names	DLX2
Domain Architecture
Description	Homeobox protein DLX-2.

DLX2_MOUSE
θ value	θ > 10 (rank : 122)	NC score	0.056607 (rank : 177)
Query Neighborhood Hits	101	Target Neighborhood Hits	352	Shared Neighborhood Hits	76
SwissProt Accessions	P40764	Gene names	Dlx2, Tes-1, Tes1
Domain Architecture
Description	Homeobox protein DLX-2 (Homeobox protein TES-1).

DLX3_HUMAN
θ value	θ > 10 (rank : 123)	NC score	0.067449 (rank : 121)
Query Neighborhood Hits	101	Target Neighborhood Hits	369	Shared Neighborhood Hits	78
SwissProt Accessions	O60479	Gene names	DLX3
Domain Architecture
Description	Homeobox protein DLX-3.

DLX3_MOUSE
θ value	θ > 10 (rank : 124)	NC score	0.063457 (rank : 138)
Query Neighborhood Hits	101	Target Neighborhood Hits	367	Shared Neighborhood Hits	78
SwissProt Accessions	Q64205	Gene names	Dlx3
Domain Architecture
Description	Homeobox protein DLX-3.

DLX5_HUMAN
θ value	θ > 10 (rank : 125)	NC score	0.063693 (rank : 137)
Query Neighborhood Hits	101	Target Neighborhood Hits	405	Shared Neighborhood Hits	78
SwissProt Accessions	P56178, Q9UPL1	Gene names	DLX5
Domain Architecture
Description	Homeobox protein DLX-5.

DLX5_MOUSE
θ value	θ > 10 (rank : 126)	NC score	0.068257 (rank : 116)
Query Neighborhood Hits	101	Target Neighborhood Hits	434	Shared Neighborhood Hits	78
SwissProt Accessions	P70396, O54876, O54877, O54878, Q9JJ45	Gene names	Dlx5
Domain Architecture
Description	Homeobox protein DLX-5.

DLX6_HUMAN
θ value	θ > 10 (rank : 127)	NC score	0.082920 (rank : 73)
Query Neighborhood Hits	101	Target Neighborhood Hits	341	Shared Neighborhood Hits	83
SwissProt Accessions	P56179, Q3ZAR6, Q9UPL2	Gene names	DLX6
Domain Architecture
Description	Homeobox protein DLX-6.

DUX1_HUMAN
θ value	θ > 10 (rank : 128)	NC score	0.075656 (rank : 79)
Query Neighborhood Hits	101	Target Neighborhood Hits	330	Shared Neighborhood Hits	69
SwissProt Accessions	O43812	Gene names	DUX1
Domain Architecture	No domain graphic available
Description	Double homeobox protein 1.

DUX3_HUMAN
θ value	θ > 10 (rank : 129)	NC score	0.068815 (rank : 112)
Query Neighborhood Hits	101	Target Neighborhood Hits	312	Shared Neighborhood Hits	69
SwissProt Accessions	Q96PT4, Q9UND2	Gene names	DUX3
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 3.

DUX4_HUMAN
θ value	θ > 10 (rank : 130)	NC score	0.071458 (rank : 100)
Query Neighborhood Hits	101	Target Neighborhood Hits	403	Shared Neighborhood Hits	69
SwissProt Accessions	Q9UBX2	Gene names	DUX4, DUX10
Domain Architecture	No domain graphic available
Description	Double homeobox protein 4 (Double homeobox protein 10) (Double homeobox protein 4/10).

DUX5_HUMAN
θ value	θ > 10 (rank : 131)	NC score	0.075283 (rank : 80)
Query Neighborhood Hits	101	Target Neighborhood Hits	330	Shared Neighborhood Hits	69
SwissProt Accessions	Q96PT3	Gene names	DUX5
Domain Architecture	No domain graphic available
Description	Double homeobox protein 5.

GSCL_HUMAN
θ value	θ > 10 (rank : 132)	NC score	0.055719 (rank : 184)
Query Neighborhood Hits	101	Target Neighborhood Hits	343	Shared Neighborhood Hits	64
SwissProt Accessions	O15499	Gene names	GSCL
Domain Architecture
Description	Homeobox protein goosecoid-like (GSC-2).

GSCL_MOUSE
θ value	θ > 10 (rank : 133)	NC score	0.055001 (rank : 189)
Query Neighborhood Hits	101	Target Neighborhood Hits	339	Shared Neighborhood Hits	64
SwissProt Accessions	P56916	Gene names	Gscl
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid-like (GSC-2).

GSC_HUMAN
θ value	θ > 10 (rank : 134)	NC score	0.068916 (rank : 110)
Query Neighborhood Hits	101	Target Neighborhood Hits	369	Shared Neighborhood Hits	78
SwissProt Accessions	P56915, Q86YR1	Gene names	GSC
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid.

GSC_MOUSE
θ value	θ > 10 (rank : 135)	NC score	0.068392 (rank : 115)
Query Neighborhood Hits	101	Target Neighborhood Hits	368	Shared Neighborhood Hits	75
SwissProt Accessions	Q02591	Gene names	Gsc
Domain Architecture
Description	Homeobox protein goosecoid.

GSH2_HUMAN
θ value	θ > 10 (rank : 136)	NC score	0.050740 (rank : 216)
Query Neighborhood Hits	101	Target Neighborhood Hits	324	Shared Neighborhood Hits	67
SwissProt Accessions	Q9BZM3	Gene names	GSH2
Domain Architecture
Description	Homeobox protein GSH-2.

GSH2_MOUSE
θ value	θ > 10 (rank : 137)	NC score	0.051165 (rank : 214)
Query Neighborhood Hits	101	Target Neighborhood Hits	319	Shared Neighborhood Hits	66
SwissProt Accessions	P31316	Gene names	Gsh2, Gsh-2
Domain Architecture
Description	Homeobox protein GSH-2.

HESX1_HUMAN
θ value	θ > 10 (rank : 138)	NC score	0.050734 (rank : 217)
Query Neighborhood Hits	101	Target Neighborhood Hits	326	Shared Neighborhood Hits	62
SwissProt Accessions	Q9UBX0, Q99667	Gene names	HESX1, HANF
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (hAnf).

HESX1_MOUSE
θ value	θ > 10 (rank : 139)	NC score	0.053714 (rank : 200)
Query Neighborhood Hits	101	Target Neighborhood Hits	331	Shared Neighborhood Hits	62
SwissProt Accessions	Q61658, Q61047	Gene names	Hesx1, Hes-1, Rpx
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (Anterior- restricted homeobox protein) (Rathke pouch homeo box).

HHEX_HUMAN
θ value	θ > 10 (rank : 140)	NC score	0.052463 (rank : 207)
Query Neighborhood Hits	101	Target Neighborhood Hits	358	Shared Neighborhood Hits	63
SwissProt Accessions	Q03014	Gene names	HHEX, HEX, PRH, PRHX
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

HHEX_MOUSE
θ value	θ > 10 (rank : 141)	NC score	0.050410 (rank : 223)
Query Neighborhood Hits	101	Target Neighborhood Hits	350	Shared Neighborhood Hits	66
SwissProt Accessions	P43120	Gene names	Hhex, Prhx
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

HLXB9_HUMAN
θ value	θ > 10 (rank : 142)	NC score	0.052362 (rank : 208)
Query Neighborhood Hits	101	Target Neighborhood Hits	336	Shared Neighborhood Hits	69
SwissProt Accessions	P50219, Q9Y648	Gene names	HLXB9
Domain Architecture
Description	Homeobox protein HB9.

HLXB9_MOUSE
θ value	θ > 10 (rank : 143)	NC score	0.050214 (rank : 225)
Query Neighborhood Hits	101	Target Neighborhood Hits	354	Shared Neighborhood Hits	73
SwissProt Accessions	Q9QZW9	Gene names	Hlxb9
Domain Architecture
Description	Homeobox protein HB9.

HMBX1_HUMAN
θ value	θ > 10 (rank : 144)	NC score	0.054467 (rank : 195)
Query Neighborhood Hits	101	Target Neighborhood Hits	118	Shared Neighborhood Hits	27
SwissProt Accessions	Q6NT76, Q3Y6P1, Q96GS5, Q9H701	Gene names	HMBOX1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

HME1_HUMAN
θ value	θ > 10 (rank : 145)	NC score	0.058385 (rank : 161)
Query Neighborhood Hits	101	Target Neighborhood Hits	384	Shared Neighborhood Hits	71
SwissProt Accessions	Q05925	Gene names	EN1
Domain Architecture
Description	Homeobox protein engrailed-1 (Hu-En-1).

HME1_MOUSE
θ value	θ > 10 (rank : 146)	NC score	0.058085 (rank : 164)
Query Neighborhood Hits	101	Target Neighborhood Hits	397	Shared Neighborhood Hits	71
SwissProt Accessions	P09065	Gene names	En1, En-1
Domain Architecture
Description	Homeobox protein engrailed-1 (Mo-En-1).

HME2_HUMAN
θ value	θ > 10 (rank : 147)	NC score	0.066497 (rank : 127)
Query Neighborhood Hits	101	Target Neighborhood Hits	355	Shared Neighborhood Hits	78
SwissProt Accessions	P19622	Gene names	EN2
Domain Architecture
Description	Homeobox protein engrailed-2 (Hu-En-2).

HME2_MOUSE
θ value	θ > 10 (rank : 148)	NC score	0.066313 (rank : 128)
Query Neighborhood Hits	101	Target Neighborhood Hits	352	Shared Neighborhood Hits	78
SwissProt Accessions	P09066	Gene names	En2, En-2
Domain Architecture
Description	Homeobox protein engrailed-2 (Mo-En-2).

HMX2_MOUSE
θ value	θ > 10 (rank : 149)	NC score	0.050413 (rank : 222)
Query Neighborhood Hits	101	Target Neighborhood Hits	354	Shared Neighborhood Hits	72
SwissProt Accessions	P43687, Q8R1Q2	Gene names	Hmx2, Nkx-5.2, Nkx5-2
Domain Architecture
Description	Homeobox protein HMX2 (Homeobox protein Nkx-5.2).

HXA10_HUMAN
θ value	θ > 10 (rank : 150)	NC score	0.056960 (rank : 170)
Query Neighborhood Hits	101	Target Neighborhood Hits	334	Shared Neighborhood Hits	68
SwissProt Accessions	P31260, O43370, O43605, Q15949	Gene names	HOXA10, HOX1H
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL).

HXA10_MOUSE
θ value	θ > 10 (rank : 151)	NC score	0.055943 (rank : 182)
Query Neighborhood Hits	101	Target Neighborhood Hits	365	Shared Neighborhood Hits	68
SwissProt Accessions	P31310, Q80Y22	Gene names	Hoxa10, Hox-1.8, Hoxa-10
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1.8).

HXA1_HUMAN
θ value	θ > 10 (rank : 152)	NC score	0.059157 (rank : 154)
Query Neighborhood Hits	101	Target Neighborhood Hits	334	Shared Neighborhood Hits	68
SwissProt Accessions	P49639, O43363	Gene names	HOXA1, HOX1F
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1F).

HXA1_MOUSE
θ value	θ > 10 (rank : 153)	NC score	0.060272 (rank : 146)
Query Neighborhood Hits	101	Target Neighborhood Hits	341	Shared Neighborhood Hits	70
SwissProt Accessions	P09022, P15463	Gene names	Hoxa1, Era-1, Hox-1.6, Hoxa-1
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399).

HXA6_HUMAN
θ value	θ > 10 (rank : 154)	NC score	0.055851 (rank : 183)
Query Neighborhood Hits	101	Target Neighborhood Hits	309	Shared Neighborhood Hits	64
SwissProt Accessions	P31267, Q9UPM0	Gene names	HOXA6, HOX1B
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A6 (Hox-1B).

HXA6_MOUSE
θ value	θ > 10 (rank : 155)	NC score	0.053973 (rank : 197)
Query Neighborhood Hits	101	Target Neighborhood Hits	304	Shared Neighborhood Hits	62
SwissProt Accessions	P09092, Q9JI98	Gene names	Hoxa6, Hox-1.2, Hoxa-6
Domain Architecture
Description	Homeobox protein Hox-A6 (Hox-1.2) (M5-4).

HXA7_HUMAN
θ value	θ > 10 (rank : 156)	NC score	0.052620 (rank : 206)
Query Neighborhood Hits	101	Target Neighborhood Hits	309	Shared Neighborhood Hits	61
SwissProt Accessions	P31268, O43368, O43486, O95655, Q9NSC8, Q9UDM1	Gene names	HOXA7, HOX1A
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1).

HXA7_MOUSE
θ value	θ > 10 (rank : 157)	NC score	0.060191 (rank : 148)
Query Neighborhood Hits	101	Target Neighborhood Hits	318	Shared Neighborhood Hits	63
SwissProt Accessions	P02830, Q544P0	Gene names	Hoxa7, Hox-1.1, Hoxa-7
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1.1) (M6-12) (M6).

HXB1_HUMAN
θ value	θ > 10 (rank : 158)	NC score	0.054812 (rank : 192)
Query Neighborhood Hits	101	Target Neighborhood Hits	356	Shared Neighborhood Hits	70
SwissProt Accessions	P14653	Gene names	HOXB1, HOX2I
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2I).

HXB1_MOUSE
θ value	θ > 10 (rank : 159)	NC score	0.055044 (rank : 188)
Query Neighborhood Hits	101	Target Neighborhood Hits	341	Shared Neighborhood Hits	70
SwissProt Accessions	P17919, Q3ZAY6, Q9CYH3	Gene names	Hoxb1, Hox-2.9, Hoxb-1
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2.9).

HXB6_HUMAN
θ value	θ > 10 (rank : 160)	NC score	0.051331 (rank : 211)
Query Neighborhood Hits	101	Target Neighborhood Hits	307	Shared Neighborhood Hits	62
SwissProt Accessions	P17509, P09068, Q9HB11, Q9UGH2	Gene names	HOXB6, HOX2B
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2).

HXB6_MOUSE
θ value	θ > 10 (rank : 161)	NC score	0.051324 (rank : 212)
Query Neighborhood Hits	101	Target Neighborhood Hits	309	Shared Neighborhood Hits	62
SwissProt Accessions	P09023	Gene names	Hoxb6, Hox-2.2, Hoxb-6
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2.2) (Homeobox protein MH-22A).

HXB7_HUMAN
θ value	θ > 10 (rank : 162)	NC score	0.056740 (rank : 173)
Query Neighborhood Hits	101	Target Neighborhood Hits	311	Shared Neighborhood Hits	62
SwissProt Accessions	P09629, Q15957	Gene names	HOXB7, HOX2C
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2C) (HHO.C1).

HXB7_MOUSE
θ value	θ > 10 (rank : 163)	NC score	0.058795 (rank : 158)
Query Neighborhood Hits	101	Target Neighborhood Hits	314	Shared Neighborhood Hits	62
SwissProt Accessions	P09024, Q3UW15	Gene names	Hoxb7, Hox-2.3, Hoxb-7
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2.3) (MUB1) (Homeobox protein MH-22B).

HXB8_HUMAN
θ value	θ > 10 (rank : 164)	NC score	0.068549 (rank : 113)
Query Neighborhood Hits	101	Target Neighborhood Hits	324	Shared Neighborhood Hits	65
SwissProt Accessions	P17481, Q9H1I2	Gene names	HOXB8, HOX2D
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4).

HXB8_MOUSE
θ value	θ > 10 (rank : 165)	NC score	0.068230 (rank : 117)
Query Neighborhood Hits	101	Target Neighborhood Hits	325	Shared Neighborhood Hits	66
SwissProt Accessions	P09632	Gene names	Hoxb8, Hox-2.4, Hoxb-8
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2.4).

HXC11_HUMAN
θ value	θ > 10 (rank : 166)	NC score	0.054727 (rank : 194)
Query Neighborhood Hits	101	Target Neighborhood Hits	349	Shared Neighborhood Hits	67
SwissProt Accessions	O43248, Q96DH2	Gene names	HOXC11
Domain Architecture
Description	Homeobox protein Hox-C11.

HXC13_HUMAN
θ value	θ > 10 (rank : 167)	NC score	0.056569 (rank : 178)
Query Neighborhood Hits	101	Target Neighborhood Hits	336	Shared Neighborhood Hits	74
SwissProt Accessions	P31276, Q96J32, Q9NR24, Q9NYD5	Gene names	HOXC13, HOX3G
Domain Architecture
Description	Homeobox protein Hox-C13 (Hox-3G).

HXC13_MOUSE
θ value	θ > 10 (rank : 168)	NC score	0.056564 (rank : 179)
Query Neighborhood Hits	101	Target Neighborhood Hits	337	Shared Neighborhood Hits	74
SwissProt Accessions	P50207, Q53Z78, Q920I7	Gene names	Hoxc13, Hoxc-13
Domain Architecture
Description	Homeobox protein Hox-C13.

HXC8_HUMAN
θ value	θ > 10 (rank : 169)	NC score	0.073425 (rank : 89)
Query Neighborhood Hits	101	Target Neighborhood Hits	327	Shared Neighborhood Hits	71
SwissProt Accessions	P31273, O15221, O15362	Gene names	HOXC8, HOX3A
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3A).

HXC8_MOUSE
θ value	θ > 10 (rank : 170)	NC score	0.073434 (rank : 88)
Query Neighborhood Hits	101	Target Neighborhood Hits	327	Shared Neighborhood Hits	71
SwissProt Accessions	P09025	Gene names	Hoxc8, Hox-3.1, Hoxc-8
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3.1) (M31).

HXD11_HUMAN
θ value	θ > 10 (rank : 171)	NC score	0.057141 (rank : 168)
Query Neighborhood Hits	101	Target Neighborhood Hits	353	Shared Neighborhood Hits	72
SwissProt Accessions	P31277, Q9NS02	Gene names	HOXD11, HOX4F
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4F).

HXD11_MOUSE
θ value	θ > 10 (rank : 172)	NC score	0.056125 (rank : 181)
Query Neighborhood Hits	101	Target Neighborhood Hits	376	Shared Neighborhood Hits	72
SwissProt Accessions	P23813	Gene names	Hoxd11, Hox-4.6, Hoxd-11
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5).

HXD13_HUMAN
θ value	θ > 10 (rank : 173)	NC score	0.065973 (rank : 131)
Query Neighborhood Hits	101	Target Neighborhood Hits	332	Shared Neighborhood Hits	74
SwissProt Accessions	P35453	Gene names	HOXD13, HOX4I
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4I).

HXD13_MOUSE
θ value	θ > 10 (rank : 174)	NC score	0.066021 (rank : 130)
Query Neighborhood Hits	101	Target Neighborhood Hits	324	Shared Neighborhood Hits	74
SwissProt Accessions	P70217, Q2VPB0, Q2VPB1, Q64177	Gene names	Hoxd13, Hox-4.8
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4.8).

HXD1_HUMAN
θ value	θ > 10 (rank : 175)	NC score	0.050466 (rank : 221)
Query Neighborhood Hits	101	Target Neighborhood Hits	337	Shared Neighborhood Hits	68
SwissProt Accessions	Q9GZZ0	Gene names	HOXD1
Domain Architecture
Description	Homeobox protein Hox-D1.

HXD1_MOUSE
θ value	θ > 10 (rank : 176)	NC score	0.053182 (rank : 202)
Query Neighborhood Hits	101	Target Neighborhood Hits	381	Shared Neighborhood Hits	66
SwissProt Accessions	Q01822	Gene names	Hoxd1, Hox-4.9, Hoxd-1
Domain Architecture
Description	Homeobox protein Hox-D1 (Hox-4.9).

HXD8_HUMAN
θ value	θ > 10 (rank : 177)	NC score	0.067272 (rank : 123)
Query Neighborhood Hits	101	Target Neighborhood Hits	338	Shared Neighborhood Hits	67
SwissProt Accessions	P13378	Gene names	HOXD8, HOX4E
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4).

HXD8_MOUSE
θ value	θ > 10 (rank : 178)	NC score	0.068896 (rank : 111)
Query Neighborhood Hits	101	Target Neighborhood Hits	333	Shared Neighborhood Hits	66
SwissProt Accessions	P23463	Gene names	Hoxd8, Hox-4.3, Hoxd-8
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4).

ISL1_HUMAN
θ value	θ > 10 (rank : 179)	NC score	0.054984 (rank : 190)
Query Neighborhood Hits	101	Target Neighborhood Hits	421	Shared Neighborhood Hits	62
SwissProt Accessions	P61371, P20663, P47894	Gene names	ISL1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

ISL1_MOUSE
θ value	θ > 10 (rank : 180)	NC score	0.054984 (rank : 191)
Query Neighborhood Hits	101	Target Neighborhood Hits	421	Shared Neighborhood Hits	62
SwissProt Accessions	P61372, P20663, P47894, Q812D8	Gene names	Isl1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

ISL2_HUMAN
θ value	θ > 10 (rank : 181)	NC score	0.059498 (rank : 152)
Query Neighborhood Hits	101	Target Neighborhood Hits	435	Shared Neighborhood Hits	63
SwissProt Accessions	Q96A47	Gene names	ISL2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

ISL2_MOUSE
θ value	θ > 10 (rank : 182)	NC score	0.072668 (rank : 92)
Query Neighborhood Hits	101	Target Neighborhood Hits	426	Shared Neighborhood Hits	65
SwissProt Accessions	Q9CXV0	Gene names	Isl2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

LBX1_HUMAN
θ value	θ > 10 (rank : 183)	NC score	0.095087 (rank : 64)
Query Neighborhood Hits	101	Target Neighborhood Hits	357	Shared Neighborhood Hits	81
SwissProt Accessions	P52954	Gene names	LBX1
Domain Architecture
Description	Transcription factor LBX1.

LBX1_MOUSE
θ value	θ > 10 (rank : 184)	NC score	0.092248 (rank : 65)
Query Neighborhood Hits	101	Target Neighborhood Hits	349	Shared Neighborhood Hits	79
SwissProt Accessions	P52955	Gene names	Lbx1, Lbx1h
Domain Architecture
Description	Transcription factor LBX1.

LHX1_HUMAN
θ value	θ > 10 (rank : 185)	NC score	0.063875 (rank : 135)
Query Neighborhood Hits	101	Target Neighborhood Hits	453	Shared Neighborhood Hits	68
SwissProt Accessions	P48742, Q3MIW0	Gene names	LHX1, LIM1
Domain Architecture
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

LHX1_MOUSE
θ value	θ > 10 (rank : 186)	NC score	0.065093 (rank : 134)
Query Neighborhood Hits	101	Target Neighborhood Hits	453	Shared Neighborhood Hits	68
SwissProt Accessions	P63006, P36199	Gene names	Lhx1, Lim-1, Lim1
Domain Architecture	No domain graphic available
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

LHX3_HUMAN
θ value	θ > 10 (rank : 187)	NC score	0.057901 (rank : 166)
Query Neighborhood Hits	101	Target Neighborhood Hits	474	Shared Neighborhood Hits	84
SwissProt Accessions	Q9UBR4, Q9NZB5, Q9P0I8, Q9P0I9	Gene names	LHX3
Domain Architecture
Description	LIM/homeobox protein Lhx3.

LHX3_MOUSE
θ value	θ > 10 (rank : 188)	NC score	0.050783 (rank : 215)
Query Neighborhood Hits	101	Target Neighborhood Hits	451	Shared Neighborhood Hits	77
SwissProt Accessions	P50481, Q61800, Q61801	Gene names	Lhx3, Lim-3, Lim3, Plim
Domain Architecture
Description	LIM/homeobox protein Lhx3 (Homeobox protein LIM-3) (Homeobox protein P-LIM) (LIM homeobox protein 3).

LHX4_HUMAN
θ value	θ > 10 (rank : 189)	NC score	0.059052 (rank : 155)
Query Neighborhood Hits	101	Target Neighborhood Hits	455	Shared Neighborhood Hits	80
SwissProt Accessions	Q969G2, Q8NHE0, Q8TCJ1, Q8WWX2, Q969W2	Gene names	LHX4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

LHX4_MOUSE
θ value	θ > 10 (rank : 190)	NC score	0.059004 (rank : 156)
Query Neighborhood Hits	101	Target Neighborhood Hits	457	Shared Neighborhood Hits	80
SwissProt Accessions	P53776, O08916, Q9R280	Gene names	Lhx4, Gsh-4, Gsh4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

LHX5_HUMAN
θ value	θ > 10 (rank : 191)	NC score	0.068162 (rank : 118)
Query Neighborhood Hits	101	Target Neighborhood Hits	453	Shared Neighborhood Hits	68
SwissProt Accessions	Q9H2C1	Gene names	LHX5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

LHX5_MOUSE
θ value	θ > 10 (rank : 192)	NC score	0.067342 (rank : 122)
Query Neighborhood Hits	101	Target Neighborhood Hits	456	Shared Neighborhood Hits	68
SwissProt Accessions	P61375, P50459	Gene names	Lhx5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

LMX1A_HUMAN
θ value	θ > 10 (rank : 193)	NC score	0.052754 (rank : 205)
Query Neighborhood Hits	101	Target Neighborhood Hits	406	Shared Neighborhood Hits	65
SwissProt Accessions	Q8TE12, Q8TE11	Gene names	LMX1A
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

LMX1A_MOUSE
θ value	θ > 10 (rank : 194)	NC score	0.056984 (rank : 169)
Query Neighborhood Hits	101	Target Neighborhood Hits	405	Shared Neighborhood Hits	63
SwissProt Accessions	Q9JKU8	Gene names	Lmx1a
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

LMX1B_HUMAN
θ value	θ > 10 (rank : 195)	NC score	0.050338 (rank : 224)
Query Neighborhood Hits	101	Target Neighborhood Hits	404	Shared Neighborhood Hits	64
SwissProt Accessions	O60663, O75463	Gene names	LMX1B
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

NKX12_MOUSE
θ value	θ > 10 (rank : 196)	NC score	0.053947 (rank : 198)
Query Neighborhood Hits	101	Target Neighborhood Hits	332	Shared Neighborhood Hits	62
SwissProt Accessions	P42580, Q9JHF2, Q9JKW5, Q9JKW6, Q9JKW9, Q9JKX0, Q9JKX1	Gene names	Nkx1-2, Nkx1.1, Sax1
Domain Architecture
Description	NK1 transcription factor-related protein 2 (Homeobox protein SAX-1) (NKX-1.1).

NKX25_HUMAN
θ value	θ > 10 (rank : 197)	NC score	0.055291 (rank : 186)
Query Neighborhood Hits	101	Target Neighborhood Hits	338	Shared Neighborhood Hits	75
SwissProt Accessions	P52952	Gene names	NKX2-5, CSX, NKX2.5, NKX2E
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

NKX28_HUMAN
θ value	θ > 10 (rank : 198)	NC score	0.072431 (rank : 93)
Query Neighborhood Hits	101	Target Neighborhood Hits	352	Shared Neighborhood Hits	82
SwissProt Accessions	O15522	Gene names	NKX2-8, NKX-2.8, NKX2G, NKX2H
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H).

NKX28_MOUSE
θ value	θ > 10 (rank : 199)	NC score	0.074985 (rank : 81)
Query Neighborhood Hits	101	Target Neighborhood Hits	347	Shared Neighborhood Hits	81
SwissProt Accessions	O70584	Gene names	Nkx2-8, Nkx-2.9, Nkx2-9, Nkx2h
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H) (Homeobox protein Nkx-2.9).

NKX61_HUMAN
θ value	θ > 10 (rank : 200)	NC score	0.063815 (rank : 136)
Query Neighborhood Hits	101	Target Neighborhood Hits	431	Shared Neighborhood Hits	74
SwissProt Accessions	P78426	Gene names	NKX6-1, NKX6A
Domain Architecture
Description	Homeobox protein Nkx-6.1.

NKX61_MOUSE
θ value	θ > 10 (rank : 201)	NC score	0.066778 (rank : 126)
Query Neighborhood Hits	101	Target Neighborhood Hits	439	Shared Neighborhood Hits	74
SwissProt Accessions	Q99MA9, Q9ERQ7	Gene names	Nkx6-1, Nkx6.1, Nkx6a
Domain Architecture
Description	Homeobox protein Nkx-6.1.

OTP_MOUSE
θ value	θ > 10 (rank : 202)	NC score	0.070496 (rank : 104)
Query Neighborhood Hits	101	Target Neighborhood Hits	387	Shared Neighborhood Hits	77
SwissProt Accessions	O09113	Gene names	Otp
Domain Architecture
Description	Homeobox protein orthopedia.

PAX3_HUMAN
θ value	θ > 10 (rank : 203)	NC score	0.069651 (rank : 107)
Query Neighborhood Hits	101	Target Neighborhood Hits	513	Shared Neighborhood Hits	74
SwissProt Accessions	P23760, Q16448	Gene names	PAX3, HUP2
Domain Architecture
Description	Paired box protein Pax-3 (HUP2).

PAX3_MOUSE
θ value	θ > 10 (rank : 204)	NC score	0.067869 (rank : 120)
Query Neighborhood Hits	101	Target Neighborhood Hits	478	Shared Neighborhood Hits	74
SwissProt Accessions	P24610, Q3UFQ9, Q8BRE7, Q9CXI6	Gene names	Pax3, Pax-3
Domain Architecture
Description	Paired box protein Pax-3.

PAX4_HUMAN
θ value	θ > 10 (rank : 205)	NC score	0.055429 (rank : 185)
Query Neighborhood Hits	101	Target Neighborhood Hits	367	Shared Neighborhood Hits	76
SwissProt Accessions	O43316, O95161, Q6B0H0	Gene names	PAX4
Domain Architecture
Description	Paired box protein Pax-4.

PAX4_MOUSE
θ value	θ > 10 (rank : 206)	NC score	0.053003 (rank : 203)
Query Neighborhood Hits	101	Target Neighborhood Hits	370	Shared Neighborhood Hits	74
SwissProt Accessions	P32115, P97341, Q9QUR1, Q9R091	Gene names	Pax4, Pax-4
Domain Architecture
Description	Paired box protein Pax-4.

PAX7_HUMAN
θ value	θ > 10 (rank : 207)	NC score	0.072084 (rank : 95)
Query Neighborhood Hits	101	Target Neighborhood Hits	456	Shared Neighborhood Hits	85
SwissProt Accessions	P23759	Gene names	PAX7, HUP1
Domain Architecture
Description	Paired box protein Pax-7 (HUP1).

PAX7_MOUSE
θ value	θ > 10 (rank : 208)	NC score	0.071450 (rank : 101)
Query Neighborhood Hits	101	Target Neighborhood Hits	422	Shared Neighborhood Hits	85
SwissProt Accessions	P47239, Q9ES16	Gene names	Pax7, Pax-7
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-7.

PEPP1_HUMAN
θ value	θ > 10 (rank : 209)	NC score	0.060823 (rank : 141)
Query Neighborhood Hits	101	Target Neighborhood Hits	338	Shared Neighborhood Hits	65
SwissProt Accessions	Q8NHV9, O95030, Q3SYE0	Gene names	PEPP1, OTEX
Domain Architecture
Description	Paired-like homeobox protein PEPP-1 (Ovary-, testis- and epididymis- expressed gene protein).

PHX2A_HUMAN
θ value	θ > 10 (rank : 210)	NC score	0.056837 (rank : 171)
Query Neighborhood Hits	101	Target Neighborhood Hits	345	Shared Neighborhood Hits	66
SwissProt Accessions	O14813, Q8IVZ2	Gene names	PHOX2A, ARIX, PMX2A
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (Aristaless homeobox protein homolog) (ARIX1 homeodomain protein).

PHX2A_MOUSE
θ value	θ > 10 (rank : 211)	NC score	0.056679 (rank : 174)
Query Neighborhood Hits	101	Target Neighborhood Hits	338	Shared Neighborhood Hits	66
SwissProt Accessions	Q62066	Gene names	Phox2a, Arix, Phox2, Pmx2, Pmx2a
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (PHOX2A homeodomain protein) (Aristaless homeobox protein homolog).

PHX2B_HUMAN
θ value	θ > 10 (rank : 212)	NC score	0.056664 (rank : 175)
Query Neighborhood Hits	101	Target Neighborhood Hits	407	Shared Neighborhood Hits	67
SwissProt Accessions	Q99453, Q6PJD9	Gene names	PHOX2B, PMX2B
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

PHX2B_MOUSE
θ value	θ > 10 (rank : 213)	NC score	0.056664 (rank : 176)
Query Neighborhood Hits	101	Target Neighborhood Hits	407	Shared Neighborhood Hits	67
SwissProt Accessions	O35690	Gene names	Phox2b, Pmx2b
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

PITX1_MOUSE
θ value	θ > 10 (rank : 214)	NC score	0.081046 (rank : 76)
Query Neighborhood Hits	101	Target Neighborhood Hits	362	Shared Neighborhood Hits	79
SwissProt Accessions	P70314, O54742, P70427	Gene names	Pitx1, Bft, Potx, Ptx1
Domain Architecture
Description	Pituitary homeobox 1 (Homeobox protein P-OTX) (Pituitary OTX-related factor) (Hindlimb expressed homeobox protein backfoot) (Ptx1).

PITX2_HUMAN
θ value	θ > 10 (rank : 215)	NC score	0.092083 (rank : 66)
Query Neighborhood Hits	101	Target Neighborhood Hits	381	Shared Neighborhood Hits	83
SwissProt Accessions	Q99697, O60578, O60579, O60580, Q9BY17	Gene names	PITX2, ARP1, RGS, RIEG, RIEG1
Domain Architecture
Description	Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription factor) (Solurshin) (ALL1-responsive protein ARP1).

PITX2_MOUSE
θ value	θ > 10 (rank : 216)	NC score	0.091463 (rank : 67)
Query Neighborhood Hits	101	Target Neighborhood Hits	383	Shared Neighborhood Hits	83
SwissProt Accessions	P97474, O08646, O70336, P97933, Q9JLA0, Q9QXB8, Q9R1V9, Q9Z141	Gene names	Pitx2, Arp1, Brx1, Otlx2, Ptx2, Rgs
Domain Architecture
Description	Pituitary homeobox 2 (Orthodenticle-like homeobox 2) (Solurshin) (ALL1-responsive protein ARP1) (BRX1 homeoprotein) (Paired-like homeodomain transcription factor Munc 30).

PO6F1_HUMAN
θ value	θ > 10 (rank : 217)	NC score	0.059981 (rank : 150)
Query Neighborhood Hits	101	Target Neighborhood Hits	370	Shared Neighborhood Hits	68
SwissProt Accessions	Q14863	Gene names	POU6F1, BRN5, MPOU, TCFB1
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (mPOU homeobox protein) (Brain-specific homeobox/POU domain protein 5) (Brain-5) (Brn-5 protein).

PO6F1_MOUSE
θ value	θ > 10 (rank : 218)	NC score	0.058023 (rank : 165)
Query Neighborhood Hits	101	Target Neighborhood Hits	581	Shared Neighborhood Hits	70
SwissProt Accessions	Q07916, Q91XK3	Gene names	Pou6f1, Emb
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (Octamer-binding transcription factor EMB) (Transcription regulatory protein MCP-1).

PO6F2_HUMAN
θ value	θ > 10 (rank : 219)	NC score	0.060465 (rank : 145)
Query Neighborhood Hits	101	Target Neighborhood Hits	618	Shared Neighborhood Hits	64
SwissProt Accessions	P78424, P78425, Q75ME8, Q86UM6, Q9UDS7	Gene names	POU6F2, RPF1
Domain Architecture
Description	POU domain, class 6, transcription factor 2 (Retina-derived POU-domain factor 1) (RPF-1).

PO6F2_MOUSE
θ value	θ > 10 (rank : 220)	NC score	0.062411 (rank : 139)
Query Neighborhood Hits	101	Target Neighborhood Hits	639	Shared Neighborhood Hits	66
SwissProt Accessions	Q8BJI4	Gene names	Pou6f2
Domain Architecture	No domain graphic available
Description	POU domain, class 6, transcription factor 2.

PROP1_HUMAN
θ value	θ > 10 (rank : 221)	NC score	0.073575 (rank : 86)
Query Neighborhood Hits	101	Target Neighborhood Hits	354	Shared Neighborhood Hits	78
SwissProt Accessions	O75360	Gene names	PROP1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

PROP1_MOUSE
θ value	θ > 10 (rank : 222)	NC score	0.073423 (rank : 90)
Query Neighborhood Hits	101	Target Neighborhood Hits	361	Shared Neighborhood Hits	76
SwissProt Accessions	P97458	Gene names	Prop1, Prop-1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

PRRX1_HUMAN
θ value	θ > 10 (rank : 223)	NC score	0.060802 (rank : 142)
Query Neighborhood Hits	101	Target Neighborhood Hits	347	Shared Neighborhood Hits	71
SwissProt Accessions	P54821, O60807	Gene names	PRRX1, PMX1
Domain Architecture
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein PHOX1).

PRRX1_MOUSE
θ value	θ > 10 (rank : 224)	NC score	0.058454 (rank : 160)
Query Neighborhood Hits	101	Target Neighborhood Hits	346	Shared Neighborhood Hits	69
SwissProt Accessions	P63013, P43271, Q02810	Gene names	Prrx1, Pmx, Pmx1
Domain Architecture	No domain graphic available
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein mHox) (Homeobox protein K-2).

PRRX2_MOUSE
θ value	θ > 10 (rank : 225)	NC score	0.058381 (rank : 162)
Query Neighborhood Hits	101	Target Neighborhood Hits	351	Shared Neighborhood Hits	70
SwissProt Accessions	Q06348, Q61651	Gene names	Prrx2, Prx2, S8
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Homeobox protein S8).

RX_MOUSE
θ value	θ > 10 (rank : 226)	NC score	0.050006 (rank : 226)
Query Neighborhood Hits	101	Target Neighborhood Hits	429	Shared Neighborhood Hits	70
SwissProt Accessions	O35602, O08748	Gene names	Rax, Rx
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

SHOX_HUMAN
θ value	θ > 10 (rank : 227)	NC score	0.060252 (rank : 147)
Query Neighborhood Hits	101	Target Neighborhood Hits	363	Shared Neighborhood Hits	68
SwissProt Accessions	O15266, O00412, O00413, O15267	Gene names	SHOX, PHOG
Domain Architecture
Description	Short stature homeobox protein (Short stature homeobox-containing protein) (Pseudoautosomal homeobox-containing osteogenic protein).

TITF1_HUMAN
θ value	θ > 10 (rank : 228)	NC score	0.054095 (rank : 196)
Query Neighborhood Hits	101	Target Neighborhood Hits	332	Shared Neighborhood Hits	67
SwissProt Accessions	P43699, O14954, O14955, Q9BRJ8	Gene names	TITF1, NKX2-1, NKX2A, TTF1
Domain Architecture
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1) (Homeobox protein NK-2 homolog A).

TITF1_MOUSE
θ value	θ > 10 (rank : 229)	NC score	0.052329 (rank : 209)
Query Neighborhood Hits	101	Target Neighborhood Hits	335	Shared Neighborhood Hits	67
SwissProt Accessions	P50220	Gene names	Titf1, Nkx-2.1, Nkx2-1, Ttf1
Domain Architecture	No domain graphic available
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1).

TLX3_MOUSE
θ value	θ > 10 (rank : 230)	NC score	0.050671 (rank : 218)
Query Neighborhood Hits	101	Target Neighborhood Hits	346	Shared Neighborhood Hits	72
SwissProt Accessions	O55144	Gene names	Tlx3, Hox11l2, Rnx, Tlx1l2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox TLX-3) (Homeobox protein Hox-11L2) (Respiratory neuron homeobox protein).

ZHX2_HUMAN
θ value	θ > 10 (rank : 231)	NC score	0.084103 (rank : 72)
Query Neighborhood Hits	101	Target Neighborhood Hits	347	Shared Neighborhood Hits	53
SwissProt Accessions	Q9Y6X8	Gene names	ZHX2, AFR1, KIAA0854, RAF
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

ZHX2_MOUSE
θ value	θ > 10 (rank : 232)	NC score	0.082477 (rank : 74)
Query Neighborhood Hits	101	Target Neighborhood Hits	435	Shared Neighborhood Hits	55
SwissProt Accessions	Q8C0C0	Gene names	Zhx2, Afr1, Raf
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

Hits sorted by NC score

PKNX1_HUMAN
NC score	0.999962 (rank : 1)	θ value	0 (rank : 1)
Query Neighborhood Hits	101	Target Neighborhood Hits	101	Shared Neighborhood Hits	101
SwissProt Accessions	P55347, O00528, Q8IWT7	Gene names	PKNOX1, PREP1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1) (Homeobox protein PREP-1).

PKNX1_MOUSE
NC score	0.998234 (rank : 2)	θ value	0 (rank : 2)
Query Neighborhood Hits	101	Target Neighborhood Hits	103	Shared Neighborhood Hits	94
SwissProt Accessions	O70477	Gene names	Pknox1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1).

PKNX2_HUMAN
NC score	0.983917 (rank : 3)	θ value	5.8157e-124 (rank : 4)
Query Neighborhood Hits	101	Target Neighborhood Hits	133	Shared Neighborhood Hits	85
SwissProt Accessions	Q96KN3, Q63HL6, Q86XD1	Gene names	PKNOX2, PREP2
Domain Architecture
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

PKNX2_MOUSE
NC score	0.976506 (rank : 4)	θ value	3.4016e-132 (rank : 3)
Query Neighborhood Hits	101	Target Neighborhood Hits	197	Shared Neighborhood Hits	86
SwissProt Accessions	Q8BG99, Q8R4B0	Gene names	Pknox2, Prep2
Domain Architecture	No domain graphic available
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

MEIS3_MOUSE
NC score	0.928489 (rank : 5)	θ value	4.54686e-52 (rank : 9)
Query Neighborhood Hits	101	Target Neighborhood Hits	118	Shared Neighborhood Hits	68
SwissProt Accessions	P97368, Q99L81	Gene names	Meis3, Mrg2
Domain Architecture
Description	Homeobox protein Meis3 (Meis1-related protein 2).

MEIS3_HUMAN
NC score	0.926133 (rank : 6)	θ value	1.91031e-50 (rank : 10)
Query Neighborhood Hits	101	Target Neighborhood Hits	118	Shared Neighborhood Hits	65
SwissProt Accessions	Q99687, Q6NT73, Q8TC66, Q9NPW2	Gene names	MEIS3, MRG2
Domain Architecture	No domain graphic available
Description	Homeobox protein Meis3 (Meis1-related protein 2).

MEIS1_MOUSE
NC score	0.925175 (rank : 7)	θ value	8.28633e-54 (rank : 5)
Query Neighborhood Hits	101	Target Neighborhood Hits	115	Shared Neighborhood Hits	65
SwissProt Accessions	Q60954, Q5SVC8, Q60955, Q8CIL0	Gene names	Meis1
Domain Architecture
Description	Homeobox protein Meis1 (Myeloid ecotropic viral integration site 1).

MEIS1_HUMAN
NC score	0.925100 (rank : 8)	θ value	1.08223e-53 (rank : 8)
Query Neighborhood Hits	101	Target Neighborhood Hits	115	Shared Neighborhood Hits	65
SwissProt Accessions	O00470	Gene names	MEIS1
Domain Architecture
Description	Homeobox protein Meis1.

MEIS2_HUMAN
NC score	0.912404 (rank : 9)	θ value	8.28633e-54 (rank : 6)
Query Neighborhood Hits	101	Target Neighborhood Hits	182	Shared Neighborhood Hits	67
SwissProt Accessions	O14770, Q96KI4, Q96KI5, Q9NRS1, Q9NRS2, Q9NRS3	Gene names	MEIS2, MRG1
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

MEIS2_MOUSE
NC score	0.908966 (rank : 10)	θ value	8.28633e-54 (rank : 7)
Query Neighborhood Hits	101	Target Neighborhood Hits	208	Shared Neighborhood Hits	67
SwissProt Accessions	P97367, O35676, O35677, P97403, P97404	Gene names	Meis2, Mrg1, Stra10
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

TF2LY_HUMAN
NC score	0.805756 (rank : 11)	θ value	1.42992e-13 (rank : 14)
Query Neighborhood Hits	101	Target Neighborhood Hits	90	Shared Neighborhood Hits	65
SwissProt Accessions	Q8IUE0	Gene names	TGIF2LY, TGIFLY
Domain Architecture
Description	Homeobox protein TGIF2LY (TGFB-induced factor 2-like protein, Y- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the Y).

TF2LX_HUMAN
NC score	0.795077 (rank : 12)	θ value	4.91457e-14 (rank : 11)
Query Neighborhood Hits	101	Target Neighborhood Hits	108	Shared Neighborhood Hits	67
SwissProt Accessions	Q8IUE1	Gene names	TGIF2LX, TGIFLX
Domain Architecture
Description	Homeobox protein TGIF2LX (TGFB-induced factor 2-like protein, X- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the X).

TGIF2_HUMAN
NC score	0.764289 (rank : 13)	θ value	6.41864e-14 (rank : 12)
Query Neighborhood Hits	101	Target Neighborhood Hits	94	Shared Neighborhood Hits	59
SwissProt Accessions	Q9GZN2	Gene names	TGIF2
Domain Architecture
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

TGIF2_MOUSE
NC score	0.758412 (rank : 14)	θ value	6.41864e-14 (rank : 13)
Query Neighborhood Hits	101	Target Neighborhood Hits	127	Shared Neighborhood Hits	62
SwissProt Accessions	Q8C0Y1	Gene names	Tgif2
Domain Architecture	No domain graphic available
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

TGIF_MOUSE
NC score	0.755676 (rank : 15)	θ value	4.16044e-13 (rank : 16)
Query Neighborhood Hits	101	Target Neighborhood Hits	125	Shared Neighborhood Hits	63
SwissProt Accessions	P70284, Q921F9, Q99JS3	Gene names	Tgif
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

TGIF_HUMAN
NC score	0.746984 (rank : 16)	θ value	3.18553e-13 (rank : 15)
Query Neighborhood Hits	101	Target Neighborhood Hits	109	Shared Neighborhood Hits	58
SwissProt Accessions	Q15583, Q6ICR0, Q8N5X9, Q9NRS0	Gene names	TGIF
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

IRX1_HUMAN
NC score	0.579572 (rank : 17)	θ value	3.08544e-08 (rank : 27)
Query Neighborhood Hits	101	Target Neighborhood Hits	285	Shared Neighborhood Hits	82
SwissProt Accessions	P78414, Q7Z2F8, Q8N312	Gene names	IRX1, IRXA1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

IRX1_MOUSE
NC score	0.578616 (rank : 18)	θ value	3.08544e-08 (rank : 28)
Query Neighborhood Hits	101	Target Neighborhood Hits	269	Shared Neighborhood Hits	82
SwissProt Accessions	P81068, O55120, Q9JLL6	Gene names	Irx1, Irxa1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

IRX6_MOUSE
NC score	0.578316 (rank : 19)	θ value	3.64472e-09 (rank : 17)
Query Neighborhood Hits	101	Target Neighborhood Hits	256	Shared Neighborhood Hits	80
SwissProt Accessions	Q9ER75	Gene names	Irx6, Irxb3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

IRX6_HUMAN
NC score	0.577305 (rank : 20)	θ value	1.80886e-08 (rank : 23)
Query Neighborhood Hits	101	Target Neighborhood Hits	262	Shared Neighborhood Hits	77
SwissProt Accessions	P78412, Q7Z2K0	Gene names	IRX6, IRX7, IRXB3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

IRX3_MOUSE
NC score	0.576079 (rank : 21)	θ value	6.87365e-08 (rank : 34)
Query Neighborhood Hits	101	Target Neighborhood Hits	303	Shared Neighborhood Hits	77
SwissProt Accessions	P81067	Gene names	Irx3, Irxb1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

IRX4_HUMAN
NC score	0.575351 (rank : 22)	θ value	5.26297e-08 (rank : 30)
Query Neighborhood Hits	101	Target Neighborhood Hits	276	Shared Neighborhood Hits	78
SwissProt Accessions	P78413, Q9UHR2	Gene names	IRX4, IRXA3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

IRX3_HUMAN
NC score	0.575259 (rank : 23)	θ value	6.87365e-08 (rank : 33)
Query Neighborhood Hits	101	Target Neighborhood Hits	342	Shared Neighborhood Hits	78
SwissProt Accessions	P78415, Q7Z4A4, Q7Z4A5, Q8IVC6	Gene names	IRX3, IRXB1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

IRX4_MOUSE
NC score	0.571955 (rank : 24)	θ value	3.08544e-08 (rank : 29)
Query Neighborhood Hits	101	Target Neighborhood Hits	286	Shared Neighborhood Hits	79
SwissProt Accessions	Q9QY61	Gene names	Irx4, Irxa3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

IRX2_MOUSE
NC score	0.567107 (rank : 25)	θ value	2.36244e-08 (rank : 26)
Query Neighborhood Hits	101	Target Neighborhood Hits	264	Shared Neighborhood Hits	78
SwissProt Accessions	P81066, O55121, Q9ERN1	Gene names	Irx2, Irxa2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

PBX4_MOUSE
NC score	0.560634 (rank : 26)	θ value	6.21693e-09 (rank : 20)
Query Neighborhood Hits	101	Target Neighborhood Hits	324	Shared Neighborhood Hits	91
SwissProt Accessions	Q99NE9, Q8CFL2, Q99NE8	Gene names	Pbx4
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 4 (Homeobox protein PBX4).

IRX5_HUMAN
NC score	0.557554 (rank : 27)	θ value	5.26297e-08 (rank : 31)
Query Neighborhood Hits	101	Target Neighborhood Hits	362	Shared Neighborhood Hits	78
SwissProt Accessions	P78411, P78416, Q7Z2E1	Gene names	IRX5, IRX2A, IRXB2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2) (IRX-2A).

IRX5_MOUSE
NC score	0.554601 (rank : 28)	θ value	5.26297e-08 (rank : 32)
Query Neighborhood Hits	101	Target Neighborhood Hits	324	Shared Neighborhood Hits	75
SwissProt Accessions	Q9JKQ4, Q80WV4, Q9JLL5	Gene names	Irx5, Irxb2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2).

IRX2_HUMAN
NC score	0.551289 (rank : 29)	θ value	8.97725e-08 (rank : 35)
Query Neighborhood Hits	101	Target Neighborhood Hits	358	Shared Neighborhood Hits	82
SwissProt Accessions	Q9BZI1, Q7Z2I7	Gene names	IRX2, IRXA2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

PBX2_MOUSE
NC score	0.540541 (rank : 30)	θ value	1.38499e-08 (rank : 22)
Query Neighborhood Hits	101	Target Neighborhood Hits	341	Shared Neighborhood Hits	93
SwissProt Accessions	O35984	Gene names	Pbx2
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2).

PBX2_HUMAN
NC score	0.540409 (rank : 31)	θ value	1.38499e-08 (rank : 21)
Query Neighborhood Hits	101	Target Neighborhood Hits	350	Shared Neighborhood Hits	93
SwissProt Accessions	P40425	Gene names	PBX2, G17
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2) (Protein G17).

PBX1_HUMAN
NC score	0.537482 (rank : 32)	θ value	1.80886e-08 (rank : 24)
Query Neighborhood Hits	101	Target Neighborhood Hits	317	Shared Neighborhood Hits	93
SwissProt Accessions	P40424	Gene names	PBX1, PRL
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1) (Homeobox protein PRL).

PBX1_MOUSE
NC score	0.537482 (rank : 33)	θ value	1.80886e-08 (rank : 25)
Query Neighborhood Hits	101	Target Neighborhood Hits	317	Shared Neighborhood Hits	93
SwissProt Accessions	P41778	Gene names	Pbx1, Pbx-1
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1).

PBX3_MOUSE
NC score	0.534863 (rank : 34)	θ value	3.64472e-09 (rank : 19)
Query Neighborhood Hits	101	Target Neighborhood Hits	306	Shared Neighborhood Hits	85
SwissProt Accessions	O35317, Q925W2	Gene names	Pbx3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX3_HUMAN
NC score	0.534829 (rank : 35)	θ value	3.64472e-09 (rank : 18)
Query Neighborhood Hits	101	Target Neighborhood Hits	306	Shared Neighborhood Hits	85
SwissProt Accessions	P40426, Q96PF9, Q96PG0	Gene names	PBX3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

SIX2_HUMAN
NC score	0.426926 (rank : 36)	θ value	0.000270298 (rank : 39)
Query Neighborhood Hits	101	Target Neighborhood Hits	345	Shared Neighborhood Hits	89
SwissProt Accessions	Q9NPC8, Q9BXH7	Gene names	SIX2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

SIX2_MOUSE
NC score	0.426257 (rank : 37)	θ value	0.000270298 (rank : 40)
Query Neighborhood Hits	101	Target Neighborhood Hits	376	Shared Neighborhood Hits	93
SwissProt Accessions	Q62232, P70179	Gene names	Six2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

SIX1_MOUSE
NC score	0.419656 (rank : 38)	θ value	0.00035302 (rank : 42)
Query Neighborhood Hits	101	Target Neighborhood Hits	341	Shared Neighborhood Hits	91
SwissProt Accessions	Q62231, Q8CIL7	Gene names	Six1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

SIX1_HUMAN
NC score	0.419186 (rank : 39)	θ value	0.00035302 (rank : 41)
Query Neighborhood Hits	101	Target Neighborhood Hits	343	Shared Neighborhood Hits	91
SwissProt Accessions	Q15475, Q96H64	Gene names	SIX1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

SIX6_MOUSE
NC score	0.400767 (rank : 40)	θ value	0.000602161 (rank : 45)
Query Neighborhood Hits	101	Target Neighborhood Hits	267	Shared Neighborhood Hits	89
SwissProt Accessions	Q9QZ28, O88423	Gene names	Six6, Optx2, Six9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Six9 protein).

SIX6_HUMAN
NC score	0.400062 (rank : 41)	θ value	0.00102713 (rank : 48)
Query Neighborhood Hits	101	Target Neighborhood Hits	269	Shared Neighborhood Hits	88
SwissProt Accessions	O95475, Q9P1X8	Gene names	SIX6, OPTX2, SIX9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Homeodomain protein OPTX2).

SIX3_HUMAN
NC score	0.395555 (rank : 42)	θ value	0.00102713 (rank : 46)
Query Neighborhood Hits	101	Target Neighborhood Hits	285	Shared Neighborhood Hits	86
SwissProt Accessions	O95343	Gene names	SIX3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX3_MOUSE
NC score	0.395505 (rank : 43)	θ value	0.00102713 (rank : 47)
Query Neighborhood Hits	101	Target Neighborhood Hits	289	Shared Neighborhood Hits	86
SwissProt Accessions	Q62233, P70176, P70177	Gene names	Six3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX5_HUMAN
NC score	0.377823 (rank : 44)	θ value	0.00020696 (rank : 38)
Query Neighborhood Hits	101	Target Neighborhood Hits	386	Shared Neighborhood Hits	93
SwissProt Accessions	Q8N196	Gene names	SIX5, DMAHP
Domain Architecture	No domain graphic available
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein).

SIX5_MOUSE
NC score	0.375944 (rank : 45)	θ value	7.1131e-05 (rank : 36)
Query Neighborhood Hits	101	Target Neighborhood Hits	354	Shared Neighborhood Hits	83
SwissProt Accessions	P70178	Gene names	Six5, Dmahp
Domain Architecture
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein homolog).

SIX4_HUMAN
NC score	0.374895 (rank : 46)	θ value	0.00035302 (rank : 43)
Query Neighborhood Hits	101	Target Neighborhood Hits	342	Shared Neighborhood Hits	88
SwissProt Accessions	Q9UIU6	Gene names	SIX4
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4).

SIX4_MOUSE
NC score	0.373390 (rank : 47)	θ value	0.00298849 (rank : 49)
Query Neighborhood Hits	101	Target Neighborhood Hits	341	Shared Neighborhood Hits	88
SwissProt Accessions	Q61321, Q61322, Q61323	Gene names	Six4, Arec3
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4) (Skeletal muscle-specific ARE-binding protein AREC3).

ONEC2_HUMAN
NC score	0.162992 (rank : 48)	θ value	3.0926 (rank : 80)
Query Neighborhood Hits	101	Target Neighborhood Hits	115	Shared Neighborhood Hits	37
SwissProt Accessions	O95948	Gene names	ONECUT2
Domain Architecture
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

ONEC2_MOUSE
NC score	0.162150 (rank : 49)	θ value	3.0926 (rank : 81)
Query Neighborhood Hits	101	Target Neighborhood Hits	123	Shared Neighborhood Hits	38
SwissProt Accessions	Q6XBJ3	Gene names	Onecut2, Oc2
Domain Architecture	No domain graphic available
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

ZHX3_MOUSE
NC score	0.151110 (rank : 50)	θ value	0.0563607 (rank : 50)
Query Neighborhood Hits	101	Target Neighborhood Hits	321	Shared Neighborhood Hits	73
SwissProt Accessions	Q8C0Q2, Q80U14	Gene names	Zhx3, Kiaa0395, Tix1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

HNF6_HUMAN
NC score	0.146851 (rank : 51)	θ value	2.36792 (rank : 72)
Query Neighborhood Hits	101	Target Neighborhood Hits	127	Shared Neighborhood Hits	42
SwissProt Accessions	Q9UBC0, Q99744, Q9UMR6	Gene names	ONECUT1, HNF6, HNF6A
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

HNF6_MOUSE
NC score	0.142494 (rank : 52)	θ value	4.03905 (rank : 84)
Query Neighborhood Hits	101	Target Neighborhood Hits	124	Shared Neighborhood Hits	43
SwissProt Accessions	O08755	Gene names	Onecut1, Hnf6, Hnf6a
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

CUTL2_MOUSE
NC score	0.129641 (rank : 53)	θ value	0.813845 (rank : 59)
Query Neighborhood Hits	101	Target Neighborhood Hits	771	Shared Neighborhood Hits	58
SwissProt Accessions	P70298	Gene names	Cutl2
Domain Architecture
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

CUTL2_HUMAN
NC score	0.121635 (rank : 54)	θ value	0.279714 (rank : 52)
Query Neighborhood Hits	101	Target Neighborhood Hits	906	Shared Neighborhood Hits	58
SwissProt Accessions	O14529	Gene names	CUTL2, KIAA0293
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

ZHX3_HUMAN
NC score	0.121557 (rank : 55)	θ value	2.36792 (rank : 73)
Query Neighborhood Hits	101	Target Neighborhood Hits	331	Shared Neighborhood Hits	66
SwissProt Accessions	Q9H4I2, O43145	Gene names	ZHX3, KIAA0395, TIX1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

LHX9_HUMAN
NC score	0.111169 (rank : 56)	θ value	9.29e-05 (rank : 37)
Query Neighborhood Hits	101	Target Neighborhood Hits	444	Shared Neighborhood Hits	72
SwissProt Accessions	Q9NQ69, Q5VUE3, Q9BYU6, Q9NQ70	Gene names	LHX9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

PITX3_HUMAN
NC score	0.109638 (rank : 57)	θ value	1.06291 (rank : 64)
Query Neighborhood Hits	101	Target Neighborhood Hits	366	Shared Neighborhood Hits	84
SwissProt Accessions	O75364	Gene names	PITX3, PTX3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

PITX3_MOUSE
NC score	0.108815 (rank : 58)	θ value	1.06291 (rank : 65)
Query Neighborhood Hits	101	Target Neighborhood Hits	380	Shared Neighborhood Hits	85
SwissProt Accessions	O35160	Gene names	Pitx3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

LHX9_MOUSE
NC score	0.107209 (rank : 59)	θ value	0.000602161 (rank : 44)
Query Neighborhood Hits	101	Target Neighborhood Hits	445	Shared Neighborhood Hits	72
SwissProt Accessions	Q9WUH2, Q9QYQ5, Q9QYQ6, Q9QZ00, Q9WU44	Gene names	Lhx9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

LHX2_MOUSE
NC score	0.104614 (rank : 60)	θ value	0.279714 (rank : 53)
Query Neighborhood Hits	101	Target Neighborhood Hits	431	Shared Neighborhood Hits	74
SwissProt Accessions	Q9Z0S2	Gene names	Lhx2
Domain Architecture
Description	LIM/homeobox protein Lhx2.

ZHX1_HUMAN
NC score	0.102433 (rank : 61)	θ value	1.06291 (rank : 66)
Query Neighborhood Hits	101	Target Neighborhood Hits	307	Shared Neighborhood Hits	61
SwissProt Accessions	Q9UKY1, Q8IWD8	Gene names	ZHX1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

LHX2_HUMAN
NC score	0.101757 (rank : 62)	θ value	1.38821 (rank : 68)
Query Neighborhood Hits	101	Target Neighborhood Hits	432	Shared Neighborhood Hits	75
SwissProt Accessions	P50458, O95860, Q8N1Z3	Gene names	LHX2, LH2
Domain Architecture
Description	LIM/homeobox protein Lhx2 (Homeobox protein LH-2).

ZHX1_MOUSE
NC score	0.099813 (rank : 63)	θ value	1.81305 (rank : 70)
Query Neighborhood Hits	101	Target Neighborhood Hits	334	Shared Neighborhood Hits	58
SwissProt Accessions	P70121, Q8BQ68, Q8C6T4, Q8CJG3	Gene names	Zhx1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

LBX1_HUMAN
NC score	0.095087 (rank : 64)	θ value	θ > 10 (rank : 183)
Query Neighborhood Hits	101	Target Neighborhood Hits	357	Shared Neighborhood Hits	81
SwissProt Accessions	P52954	Gene names	LBX1
Domain Architecture
Description	Transcription factor LBX1.

LBX1_MOUSE
NC score	0.092248 (rank : 65)	θ value	θ > 10 (rank : 184)
Query Neighborhood Hits	101	Target Neighborhood Hits	349	Shared Neighborhood Hits	79
SwissProt Accessions	P52955	Gene names	Lbx1, Lbx1h
Domain Architecture
Description	Transcription factor LBX1.

PITX2_HUMAN
NC score	0.092083 (rank : 66)	θ value	θ > 10 (rank : 215)
Query Neighborhood Hits	101	Target Neighborhood Hits	381	Shared Neighborhood Hits	83
SwissProt Accessions	Q99697, O60578, O60579, O60580, Q9BY17	Gene names	PITX2, ARP1, RGS, RIEG, RIEG1
Domain Architecture
Description	Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription factor) (Solurshin) (ALL1-responsive protein ARP1).

PITX2_MOUSE
NC score	0.091463 (rank : 67)	θ value	θ > 10 (rank : 216)
Query Neighborhood Hits	101	Target Neighborhood Hits	383	Shared Neighborhood Hits	83
SwissProt Accessions	P97474, O08646, O70336, P97933, Q9JLA0, Q9QXB8, Q9R1V9, Q9Z141	Gene names	Pitx2, Arp1, Brx1, Otlx2, Ptx2, Rgs
Domain Architecture
Description	Pituitary homeobox 2 (Orthodenticle-like homeobox 2) (Solurshin) (ALL1-responsive protein ARP1) (BRX1 homeoprotein) (Paired-like homeodomain transcription factor Munc 30).

HLX1_HUMAN
NC score	0.089737 (rank : 68)	θ value	0.813845 (rank : 60)
Query Neighborhood Hits	101	Target Neighborhood Hits	370	Shared Neighborhood Hits	75
SwissProt Accessions	Q14774, Q15988	Gene names	HLX1
Domain Architecture
Description	Homeobox protein HLX1 (Homeobox protein HB24).

EMX2_MOUSE
NC score	0.084775 (rank : 69)	θ value	0.365318 (rank : 55)
Query Neighborhood Hits	101	Target Neighborhood Hits	340	Shared Neighborhood Hits	77
SwissProt Accessions	Q04744, Q80UE7	Gene names	Emx2, Emx-2
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

EMX2_HUMAN
NC score	0.084426 (rank : 70)	θ value	0.365318 (rank : 54)
Query Neighborhood Hits	101	Target Neighborhood Hits	341	Shared Neighborhood Hits	77
SwissProt Accessions	Q04743, Q96NN8, Q9BQF4	Gene names	EMX2
Domain Architecture
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

HLX1_MOUSE
NC score	0.084359 (rank : 71)	θ value	0.813845 (rank : 61)
Query Neighborhood Hits	101	Target Neighborhood Hits	362	Shared Neighborhood Hits	72
SwissProt Accessions	Q61670	Gene names	Hlx1, Hlx
Domain Architecture
Description	Homeobox protein HLX1.

ZHX2_HUMAN
NC score	0.084103 (rank : 72)	θ value	θ > 10 (rank : 231)
Query Neighborhood Hits	101	Target Neighborhood Hits	347	Shared Neighborhood Hits	53
SwissProt Accessions	Q9Y6X8	Gene names	ZHX2, AFR1, KIAA0854, RAF
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

DLX6_HUMAN
NC score	0.082920 (rank : 73)	θ value	θ > 10 (rank : 127)
Query Neighborhood Hits	101	Target Neighborhood Hits	341	Shared Neighborhood Hits	83
SwissProt Accessions	P56179, Q3ZAR6, Q9UPL2	Gene names	DLX6
Domain Architecture
Description	Homeobox protein DLX-6.

ZHX2_MOUSE
NC score	0.082477 (rank : 74)	θ value	θ > 10 (rank : 232)
Query Neighborhood Hits	101	Target Neighborhood Hits	435	Shared Neighborhood Hits	55
SwissProt Accessions	Q8C0C0	Gene names	Zhx2, Afr1, Raf
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

BSH_MOUSE
NC score	0.081775 (rank : 75)	θ value	θ > 10 (rank : 110)
Query Neighborhood Hits	101	Target Neighborhood Hits	349	Shared Neighborhood Hits	77
SwissProt Accessions	Q810B3	Gene names	Bsx
Domain Architecture	No domain graphic available
Description	Brain-specific homeobox protein homolog.

PITX1_MOUSE
NC score	0.081046 (rank : 76)	θ value	θ > 10 (rank : 214)
Query Neighborhood Hits	101	Target Neighborhood Hits	362	Shared Neighborhood Hits	79
SwissProt Accessions	P70314, O54742, P70427	Gene names	Pitx1, Bft, Potx, Ptx1
Domain Architecture
Description	Pituitary homeobox 1 (Homeobox protein P-OTX) (Pituitary OTX-related factor) (Hindlimb expressed homeobox protein backfoot) (Ptx1).

PRRXL_MOUSE
NC score	0.077313 (rank : 77)	θ value	5.27518 (rank : 97)
Query Neighborhood Hits	101	Target Neighborhood Hits	350	Shared Neighborhood Hits	79
SwissProt Accessions	Q8BYH0, Q8K3F8	Gene names	Prrxl1, Drg11
Domain Architecture	No domain graphic available
Description	Paired-related homeobox protein-like 1 (Dorsal root ganglion 11) (Homeobox protein DRG11).

HXB13_HUMAN
NC score	0.076870 (rank : 78)	θ value	5.27518 (rank : 87)
Query Neighborhood Hits	101	Target Neighborhood Hits	377	Shared Neighborhood Hits	77
SwissProt Accessions	Q92826, Q96QM4, Q99810	Gene names	HOXB13
Domain Architecture
Description	Homeobox protein Hox-B13.

DUX1_HUMAN
NC score	0.075656 (rank : 79)	θ value	θ > 10 (rank : 128)
Query Neighborhood Hits	101	Target Neighborhood Hits	330	Shared Neighborhood Hits	69
SwissProt Accessions	O43812	Gene names	DUX1
Domain Architecture	No domain graphic available
Description	Double homeobox protein 1.

DUX5_HUMAN
NC score	0.075283 (rank : 80)	θ value	θ > 10 (rank : 131)
Query Neighborhood Hits	101	Target Neighborhood Hits	330	Shared Neighborhood Hits	69
SwissProt Accessions	Q96PT3	Gene names	DUX5
Domain Architecture	No domain graphic available
Description	Double homeobox protein 5.

NKX28_MOUSE
NC score	0.074985 (rank : 81)	θ value	θ > 10 (rank : 199)
Query Neighborhood Hits	101	Target Neighborhood Hits	347	Shared Neighborhood Hits	81
SwissProt Accessions	O70584	Gene names	Nkx2-8, Nkx-2.9, Nkx2-9, Nkx2h
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H) (Homeobox protein Nkx-2.9).

HXD10_MOUSE
NC score	0.074499 (rank : 82)	θ value	3.0926 (rank : 79)
Query Neighborhood Hits	101	Target Neighborhood Hits	392	Shared Neighborhood Hits	74
SwissProt Accessions	P28359, Q91WU9	Gene names	Hoxd10, Hox-4.5, Hoxd-10
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4.5) (Hox-5.3).

HXD10_HUMAN
NC score	0.074063 (rank : 83)	θ value	3.0926 (rank : 78)
Query Neighborhood Hits	101	Target Neighborhood Hits	392	Shared Neighborhood Hits	74
SwissProt Accessions	P28358	Gene names	HOXD10, HOX4D
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4D) (Hox-4E).

DLX4_MOUSE
NC score	0.073812 (rank : 84)	θ value	3.0926 (rank : 75)
Query Neighborhood Hits	101	Target Neighborhood Hits	352	Shared Neighborhood Hits	74
SwissProt Accessions	P70436, Q3UM51, Q8R4I3	Gene names	Dlx4, Dlx7
Domain Architecture
Description	Homeobox protein DLX-4 (DLX-7).

ALX3_MOUSE
NC score	0.073716 (rank : 85)	θ value	θ > 10 (rank : 103)
Query Neighborhood Hits	101	Target Neighborhood Hits	386	Shared Neighborhood Hits	77
SwissProt Accessions	O70137	Gene names	Alx3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

PROP1_HUMAN
NC score	0.073575 (rank : 86)	θ value	θ > 10 (rank : 221)
Query Neighborhood Hits	101	Target Neighborhood Hits	354	Shared Neighborhood Hits	78
SwissProt Accessions	O75360	Gene names	PROP1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

ALX3_HUMAN
NC score	0.073513 (rank : 87)	θ value	θ > 10 (rank : 102)
Query Neighborhood Hits	101	Target Neighborhood Hits	380	Shared Neighborhood Hits	78
SwissProt Accessions	O95076, O95075	Gene names	ALX3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

HXC8_MOUSE
NC score	0.073434 (rank : 88)	θ value	θ > 10 (rank : 170)
Query Neighborhood Hits	101	Target Neighborhood Hits	327	Shared Neighborhood Hits	71
SwissProt Accessions	P09025	Gene names	Hoxc8, Hox-3.1, Hoxc-8
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3.1) (M31).

HXC8_HUMAN
NC score	0.073425 (rank : 89)	θ value	θ > 10 (rank : 169)
Query Neighborhood Hits	101	Target Neighborhood Hits	327	Shared Neighborhood Hits	71
SwissProt Accessions	P31273, O15221, O15362	Gene names	HOXC8, HOX3A
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3A).

PROP1_MOUSE
NC score	0.073423 (rank : 90)	θ value	θ > 10 (rank : 222)
Query Neighborhood Hits	101	Target Neighborhood Hits	361	Shared Neighborhood Hits	76
SwissProt Accessions	P97458	Gene names	Prop1, Prop-1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

PITX1_HUMAN
NC score	0.073397 (rank : 91)	θ value	8.99809 (rank : 99)
Query Neighborhood Hits	101	Target Neighborhood Hits	353	Shared Neighborhood Hits	75
SwissProt Accessions	P78337, O14677, O60425, Q9BTI5	Gene names	PITX1, BFT, PTX1
Domain Architecture
Description	Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot).

ISL2_MOUSE
NC score	0.072668 (rank : 92)	θ value	θ > 10 (rank : 182)
Query Neighborhood Hits	101	Target Neighborhood Hits	426	Shared Neighborhood Hits	65
SwissProt Accessions	Q9CXV0	Gene names	Isl2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

NKX28_HUMAN
NC score	0.072431 (rank : 93)	θ value	θ > 10 (rank : 198)
Query Neighborhood Hits	101	Target Neighborhood Hits	352	Shared Neighborhood Hits	82
SwissProt Accessions	O15522	Gene names	NKX2-8, NKX-2.8, NKX2G, NKX2H
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H).

HXA13_MOUSE
NC score	0.072398 (rank : 94)	θ value	4.03905 (rank : 86)
Query Neighborhood Hits	101	Target Neighborhood Hits	351	Shared Neighborhood Hits	77
SwissProt Accessions	Q62424	Gene names	Hoxa13, Hox-1.10
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1.10).

PAX7_HUMAN
NC score	0.072084 (rank : 95)	θ value	θ > 10 (rank : 207)
Query Neighborhood Hits	101	Target Neighborhood Hits	456	Shared Neighborhood Hits	85
SwissProt Accessions	P23759	Gene names	PAX7, HUP1
Domain Architecture
Description	Paired box protein Pax-7 (HUP1).

HXA13_HUMAN
NC score	0.071979 (rank : 96)	θ value	4.03905 (rank : 85)
Query Neighborhood Hits	101	Target Neighborhood Hits	353	Shared Neighborhood Hits	77
SwissProt Accessions	P31271, O43371	Gene names	HOXA13, HOX1J
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1J).

HXA9_HUMAN
NC score	0.071948 (rank : 97)	θ value	1.06291 (rank : 62)
Query Neighborhood Hits	101	Target Neighborhood Hits	332	Shared Neighborhood Hits	72
SwissProt Accessions	P31269, O43369, O43429, Q99820	Gene names	HOXA9, HOX1G
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1G).

HXA9_MOUSE
NC score	0.071943 (rank : 98)	θ value	1.06291 (rank : 63)
Query Neighborhood Hits	101	Target Neighborhood Hits	334	Shared Neighborhood Hits	72
SwissProt Accessions	P09631, O70154, O70155	Gene names	Hoxa9, Hox-1.7, Hoxa-9
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1.7).

HXB13_MOUSE
NC score	0.071914 (rank : 99)	θ value	3.0926 (rank : 77)
Query Neighborhood Hits	101	Target Neighborhood Hits	384	Shared Neighborhood Hits	76
SwissProt Accessions	P70321, Q80Y12	Gene names	Hoxb13
Domain Architecture
Description	Homeobox protein Hox-B13.

DUX4_HUMAN
NC score	0.071458 (rank : 100)	θ value	θ > 10 (rank : 130)
Query Neighborhood Hits	101	Target Neighborhood Hits	403	Shared Neighborhood Hits	69
SwissProt Accessions	Q9UBX2	Gene names	DUX4, DUX10
Domain Architecture	No domain graphic available
Description	Double homeobox protein 4 (Double homeobox protein 10) (Double homeobox protein 4/10).

PAX7_MOUSE
NC score	0.071450 (rank : 101)	θ value	θ > 10 (rank : 208)
Query Neighborhood Hits	101	Target Neighborhood Hits	422	Shared Neighborhood Hits	85
SwissProt Accessions	P47239, Q9ES16	Gene names	Pax7, Pax-7
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-7.

BARX2_HUMAN
NC score	0.071275 (rank : 102)	θ value	θ > 10 (rank : 108)
Query Neighborhood Hits	101	Target Neighborhood Hits	387	Shared Neighborhood Hits	72
SwissProt Accessions	Q9UMQ3, O43518	Gene names	BARX2
Domain Architecture
Description	Homeobox protein BarH-like 2.

HXC10_MOUSE
NC score	0.071257 (rank : 103)	θ value	5.27518 (rank : 91)
Query Neighborhood Hits	101	Target Neighborhood Hits	417	Shared Neighborhood Hits	75
SwissProt Accessions	P31257, P31312, Q7TMT7	Gene names	Hoxc10, Hox-3.6, Hoxc-10
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C10 (Hox-3.6).

OTP_MOUSE
NC score	0.070496 (rank : 104)	θ value	θ > 10 (rank : 202)
Query Neighborhood Hits	101	Target Neighborhood Hits	387	Shared Neighborhood Hits	77
SwissProt Accessions	O09113	Gene names	Otp
Domain Architecture
Description	Homeobox protein orthopedia.

ALX4_MOUSE
NC score	0.070489 (rank : 105)	θ value	θ > 10 (rank : 105)
Query Neighborhood Hits	101	Target Neighborhood Hits	369	Shared Neighborhood Hits	81
SwissProt Accessions	O35137	Gene names	Alx4
Domain Architecture
Description	Homeobox protein aristaless-like 4 (ALX-4).

HXC10_HUMAN
NC score	0.070240 (rank : 106)	θ value	5.27518 (rank : 90)
Query Neighborhood Hits	101	Target Neighborhood Hits	417	Shared Neighborhood Hits	74
SwissProt Accessions	Q9NYD6, O15219, O15220, Q9BVD5	Gene names	HOXC10
Domain Architecture
Description	Homeobox protein Hox-C10.

PAX3_HUMAN
NC score	0.069651 (rank : 107)	θ value	θ > 10 (rank : 203)
Query Neighborhood Hits	101	Target Neighborhood Hits	513	Shared Neighborhood Hits	74
SwissProt Accessions	P23760, Q16448	Gene names	PAX3, HUP2
Domain Architecture
Description	Paired box protein Pax-3 (HUP2).

DLX1_MOUSE
NC score	0.069428 (rank : 108)	θ value	θ > 10 (rank : 120)
Query Neighborhood Hits	101	Target Neighborhood Hits	343	Shared Neighborhood Hits	80
SwissProt Accessions	Q64317	Gene names	Dlx1
Domain Architecture
Description	Homeobox protein DLX-1.

DLX1_HUMAN
NC score	0.069414 (rank : 109)	θ value	θ > 10 (rank : 119)
Query Neighborhood Hits	101	Target Neighborhood Hits	343	Shared Neighborhood Hits	80
SwissProt Accessions	P56177, Q53ZU4, Q8IYB2	Gene names	DLX1
Domain Architecture
Description	Homeobox protein DLX-1.

GSC_HUMAN
NC score	0.068916 (rank : 110)	θ value	θ > 10 (rank : 134)
Query Neighborhood Hits	101	Target Neighborhood Hits	369	Shared Neighborhood Hits	78
SwissProt Accessions	P56915, Q86YR1	Gene names	GSC
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid.

HXD8_MOUSE
NC score	0.068896 (rank : 111)	θ value	θ > 10 (rank : 178)
Query Neighborhood Hits	101	Target Neighborhood Hits	333	Shared Neighborhood Hits	66
SwissProt Accessions	P23463	Gene names	Hoxd8, Hox-4.3, Hoxd-8
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4).

DUX3_HUMAN
NC score	0.068815 (rank : 112)	θ value	θ > 10 (rank : 129)
Query Neighborhood Hits	101	Target Neighborhood Hits	312	Shared Neighborhood Hits	69
SwissProt Accessions	Q96PT4, Q9UND2	Gene names	DUX3
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 3.

HXB8_HUMAN
NC score	0.068549 (rank : 113)	θ value	θ > 10 (rank : 164)
Query Neighborhood Hits	101	Target Neighborhood Hits	324	Shared Neighborhood Hits	65
SwissProt Accessions	P17481, Q9H1I2	Gene names	HOXB8, HOX2D
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4).

EMX1_HUMAN
NC score	0.068471 (rank : 114)	θ value	3.0926 (rank : 76)
Query Neighborhood Hits	101	Target Neighborhood Hits	336	Shared Neighborhood Hits	77
SwissProt Accessions	Q04741, Q86XB0	Gene names	EMX1
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty spiracles- like protein 1).

GSC_MOUSE
NC score	0.068392 (rank : 115)	θ value	θ > 10 (rank : 135)
Query Neighborhood Hits	101	Target Neighborhood Hits	368	Shared Neighborhood Hits	75
SwissProt Accessions	Q02591	Gene names	Gsc
Domain Architecture
Description	Homeobox protein goosecoid.

DLX5_MOUSE
NC score	0.068257 (rank : 116)	θ value	θ > 10 (rank : 126)
Query Neighborhood Hits	101	Target Neighborhood Hits	434	Shared Neighborhood Hits	78
SwissProt Accessions	P70396, O54876, O54877, O54878, Q9JJ45	Gene names	Dlx5
Domain Architecture
Description	Homeobox protein DLX-5.

HXB8_MOUSE
NC score	0.068230 (rank : 117)	θ value	θ > 10 (rank : 165)
Query Neighborhood Hits	101	Target Neighborhood Hits	325	Shared Neighborhood Hits	66
SwissProt Accessions	P09632	Gene names	Hoxb8, Hox-2.4, Hoxb-8
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2.4).

LHX5_HUMAN
NC score	0.068162 (rank : 118)	θ value	θ > 10 (rank : 191)
Query Neighborhood Hits	101	Target Neighborhood Hits	453	Shared Neighborhood Hits	68
SwissProt Accessions	Q9H2C1	Gene names	LHX5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

DLX4_HUMAN
NC score	0.067902 (rank : 119)	θ value	6.88961 (rank : 98)
Query Neighborhood Hits	101	Target Neighborhood Hits	350	Shared Neighborhood Hits	74
SwissProt Accessions	Q92988, O60480, Q13265, Q6PJK0, Q9HBE0	Gene names	DLX4, BP1, DLX7, DLX8
Domain Architecture	No domain graphic available
Description	Homeobox protein DLX-4 (DLX-7) (DLX-8) (Beta protein 1).

PAX3_MOUSE
NC score	0.067869 (rank : 120)	θ value	θ > 10 (rank : 204)
Query Neighborhood Hits	101	Target Neighborhood Hits	478	Shared Neighborhood Hits	74
SwissProt Accessions	P24610, Q3UFQ9, Q8BRE7, Q9CXI6	Gene names	Pax3, Pax-3
Domain Architecture
Description	Paired box protein Pax-3.

DLX3_HUMAN
NC score	0.067449 (rank : 121)	θ value	θ > 10 (rank : 123)
Query Neighborhood Hits	101	Target Neighborhood Hits	369	Shared Neighborhood Hits	78
SwissProt Accessions	O60479	Gene names	DLX3
Domain Architecture
Description	Homeobox protein DLX-3.

LHX5_MOUSE
NC score	0.067342 (rank : 122)	θ value	θ > 10 (rank : 192)
Query Neighborhood Hits	101	Target Neighborhood Hits	456	Shared Neighborhood Hits	68
SwissProt Accessions	P61375, P50459	Gene names	Lhx5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

HXD8_HUMAN
NC score	0.067272 (rank : 123)	θ value	θ > 10 (rank : 177)
Query Neighborhood Hits	101	Target Neighborhood Hits	338	Shared Neighborhood Hits	67
SwissProt Accessions	P13378	Gene names	HOXD8, HOX4E
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4).

ALX4_HUMAN
NC score	0.066957 (rank : 124)	θ value	θ > 10 (rank : 104)
Query Neighborhood Hits	101	Target Neighborhood Hits	394	Shared Neighborhood Hits	76
SwissProt Accessions	Q9H161, Q96JN7, Q9H198, Q9HAY9	Gene names	ALX4, KIAA1788
Domain Architecture
Description	Homeobox protein aristaless-like 4.

BARX2_MOUSE
NC score	0.066820 (rank : 125)	θ value	θ > 10 (rank : 109)
Query Neighborhood Hits	101	Target Neighborhood Hits	335	Shared Neighborhood Hits	70
SwissProt Accessions	O08686	Gene names	Barx2
Domain Architecture
Description	Homeobox protein BarH-like 2.

NKX61_MOUSE
NC score	0.066778 (rank : 126)	θ value	θ > 10 (rank : 201)
Query Neighborhood Hits	101	Target Neighborhood Hits	439	Shared Neighborhood Hits	74
SwissProt Accessions	Q99MA9, Q9ERQ7	Gene names	Nkx6-1, Nkx6.1, Nkx6a
Domain Architecture
Description	Homeobox protein Nkx-6.1.

HME2_HUMAN
NC score	0.066497 (rank : 127)	θ value	θ > 10 (rank : 147)
Query Neighborhood Hits	101	Target Neighborhood Hits	355	Shared Neighborhood Hits	78
SwissProt Accessions	P19622	Gene names	EN2
Domain Architecture
Description	Homeobox protein engrailed-2 (Hu-En-2).

HME2_MOUSE
NC score	0.066313 (rank : 128)	θ value	θ > 10 (rank : 148)
Query Neighborhood Hits	101	Target Neighborhood Hits	352	Shared Neighborhood Hits	78
SwissProt Accessions	P09066	Gene names	En2, En-2
Domain Architecture
Description	Homeobox protein engrailed-2 (Mo-En-2).

CUTL1_MOUSE
NC score	0.066145 (rank : 129)	θ value	1.38821 (rank : 67)
Query Neighborhood Hits	101	Target Neighborhood Hits	1620	Shared Neighborhood Hits	62
SwissProt Accessions	P53564, O08994, P70301, Q571L6, Q91ZD2	Gene names	Cutl1, Cux, Cux1, Kiaa4047
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP) (Homeobox protein Cux).

HXD13_MOUSE
NC score	0.066021 (rank : 130)	θ value	θ > 10 (rank : 174)
Query Neighborhood Hits	101	Target Neighborhood Hits	324	Shared Neighborhood Hits	74
SwissProt Accessions	P70217, Q2VPB0, Q2VPB1, Q64177	Gene names	Hoxd13, Hox-4.8
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4.8).

HXD13_HUMAN
NC score	0.065973 (rank : 131)	θ value	θ > 10 (rank : 173)
Query Neighborhood Hits	101	Target Neighborhood Hits	332	Shared Neighborhood Hits	74
SwissProt Accessions	P35453	Gene names	HOXD13, HOX4I
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4I).

HXC9_HUMAN
NC score	0.065437 (rank : 132)	θ value	5.27518 (rank : 92)
Query Neighborhood Hits	101	Target Neighborhood Hits	339	Shared Neighborhood Hits	68
SwissProt Accessions	P31274, Q9H1I0	Gene names	HOXC9, HOX3B
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3B).

HXC9_MOUSE
NC score	0.065416 (rank : 133)	θ value	5.27518 (rank : 93)
Query Neighborhood Hits	101	Target Neighborhood Hits	338	Shared Neighborhood Hits	68
SwissProt Accessions	P09633	Gene names	Hoxc9, Hox-3.2, Hoxc-9
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3.2).

LHX1_MOUSE
NC score	0.065093 (rank : 134)	θ value	θ > 10 (rank : 186)
Query Neighborhood Hits	101	Target Neighborhood Hits	453	Shared Neighborhood Hits	68
SwissProt Accessions	P63006, P36199	Gene names	Lhx1, Lim-1, Lim1
Domain Architecture	No domain graphic available
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

LHX1_HUMAN
NC score	0.063875 (rank : 135)	θ value	θ > 10 (rank : 185)
Query Neighborhood Hits	101	Target Neighborhood Hits	453	Shared Neighborhood Hits	68
SwissProt Accessions	P48742, Q3MIW0	Gene names	LHX1, LIM1
Domain Architecture
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

NKX61_HUMAN
NC score	0.063815 (rank : 136)	θ value	θ > 10 (rank : 200)
Query Neighborhood Hits	101	Target Neighborhood Hits	431	Shared Neighborhood Hits	74
SwissProt Accessions	P78426	Gene names	NKX6-1, NKX6A
Domain Architecture
Description	Homeobox protein Nkx-6.1.

DLX5_HUMAN
NC score	0.063693 (rank : 137)	θ value	θ > 10 (rank : 125)
Query Neighborhood Hits	101	Target Neighborhood Hits	405	Shared Neighborhood Hits	78
SwissProt Accessions	P56178, Q9UPL1	Gene names	DLX5
Domain Architecture
Description	Homeobox protein DLX-5.

DLX3_MOUSE
NC score	0.063457 (rank : 138)	θ value	θ > 10 (rank : 124)
Query Neighborhood Hits	101	Target Neighborhood Hits	367	Shared Neighborhood Hits	78
SwissProt Accessions	Q64205	Gene names	Dlx3
Domain Architecture
Description	Homeobox protein DLX-3.

PO6F2_MOUSE
NC score	0.062411 (rank : 139)	θ value	θ > 10 (rank : 220)
Query Neighborhood Hits	101	Target Neighborhood Hits	639	Shared Neighborhood Hits	66
SwissProt Accessions	Q8BJI4	Gene names	Pou6f2
Domain Architecture	No domain graphic available
Description	POU domain, class 6, transcription factor 2.

HXD9_HUMAN
NC score	0.061332 (rank : 140)	θ value	5.27518 (rank : 94)
Query Neighborhood Hits	101	Target Neighborhood Hits	352	Shared Neighborhood Hits	68
SwissProt Accessions	P28356	Gene names	HOXD9, HOX4C
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2).

PEPP1_HUMAN
NC score	0.060823 (rank : 141)	θ value	θ > 10 (rank : 209)
Query Neighborhood Hits	101	Target Neighborhood Hits	338	Shared Neighborhood Hits	65
SwissProt Accessions	Q8NHV9, O95030, Q3SYE0	Gene names	PEPP1, OTEX
Domain Architecture
Description	Paired-like homeobox protein PEPP-1 (Ovary-, testis- and epididymis- expressed gene protein).

PRRX1_HUMAN
NC score	0.060802 (rank : 142)	θ value	θ > 10 (rank : 223)
Query Neighborhood Hits	101	Target Neighborhood Hits	347	Shared Neighborhood Hits	71
SwissProt Accessions	P54821, O60807	Gene names	PRRX1, PMX1
Domain Architecture
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein PHOX1).

HXD9_MOUSE
NC score	0.060651 (rank : 143)	θ value	5.27518 (rank : 95)
Query Neighborhood Hits	101	Target Neighborhood Hits	359	Shared Neighborhood Hits	68
SwissProt Accessions	P28357, Q3UYS2	Gene names	Hoxd9, Hox-4.4, Hoxd-9
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4.4) (Hox-5.2).

CUTL1_HUMAN
NC score	0.060611 (rank : 144)	θ value	2.36792 (rank : 71)
Query Neighborhood Hits	101	Target Neighborhood Hits	1574	Shared Neighborhood Hits	60
SwissProt Accessions	P39880, Q6NYH4, Q9UEV5	Gene names	CUTL1
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP).

PO6F2_HUMAN
NC score	0.060465 (rank : 145)	θ value	θ > 10 (rank : 219)
Query Neighborhood Hits	101	Target Neighborhood Hits	618	Shared Neighborhood Hits	64
SwissProt Accessions	P78424, P78425, Q75ME8, Q86UM6, Q9UDS7	Gene names	POU6F2, RPF1
Domain Architecture
Description	POU domain, class 6, transcription factor 2 (Retina-derived POU-domain factor 1) (RPF-1).

HXA1_MOUSE
NC score	0.060272 (rank : 146)	θ value	θ > 10 (rank : 153)
Query Neighborhood Hits	101	Target Neighborhood Hits	341	Shared Neighborhood Hits	70
SwissProt Accessions	P09022, P15463	Gene names	Hoxa1, Era-1, Hox-1.6, Hoxa-1
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399).

SHOX_HUMAN
NC score	0.060252 (rank : 147)	θ value	θ > 10 (rank : 227)
Query Neighborhood Hits	101	Target Neighborhood Hits	363	Shared Neighborhood Hits	68
SwissProt Accessions	O15266, O00412, O00413, O15267	Gene names	SHOX, PHOG
Domain Architecture
Description	Short stature homeobox protein (Short stature homeobox-containing protein) (Pseudoautosomal homeobox-containing osteogenic protein).

HXA7_MOUSE
NC score	0.060191 (rank : 148)	θ value	θ > 10 (rank : 157)
Query Neighborhood Hits	101	Target Neighborhood Hits	318	Shared Neighborhood Hits	63
SwissProt Accessions	P02830, Q544P0	Gene names	Hoxa7, Hox-1.1, Hoxa-7
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1.1) (M6-12) (M6).

OTX1_HUMAN
NC score	0.060113 (rank : 149)	θ value	1.81305 (rank : 69)
Query Neighborhood Hits	101	Target Neighborhood Hits	379	Shared Neighborhood Hits	67
SwissProt Accessions	P32242, Q53TG6	Gene names	OTX1
Domain Architecture
Description	Homeobox protein OTX1.

PO6F1_HUMAN
NC score	0.059981 (rank : 150)	θ value	θ > 10 (rank : 217)
Query Neighborhood Hits	101	Target Neighborhood Hits	370	Shared Neighborhood Hits	68
SwissProt Accessions	Q14863	Gene names	POU6F1, BRN5, MPOU, TCFB1
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (mPOU homeobox protein) (Brain-specific homeobox/POU domain protein 5) (Brain-5) (Brn-5 protein).

OTX1_MOUSE
NC score	0.059825 (rank : 151)	θ value	3.0926 (rank : 82)
Query Neighborhood Hits	101	Target Neighborhood Hits	372	Shared Neighborhood Hits	68
SwissProt Accessions	P80205	Gene names	Otx1, Otx-1
Domain Architecture
Description	Homeobox protein OTX1.

ISL2_HUMAN
NC score	0.059498 (rank : 152)	θ value	θ > 10 (rank : 181)
Query Neighborhood Hits	101	Target Neighborhood Hits	435	Shared Neighborhood Hits	63
SwissProt Accessions	Q96A47	Gene names	ISL2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

HXB9_MOUSE
NC score	0.059335 (rank : 153)	θ value	5.27518 (rank : 89)
Query Neighborhood Hits	101	Target Neighborhood Hits	344	Shared Neighborhood Hits	63
SwissProt Accessions	P20615	Gene names	Hoxb9, Hox-2.5, Hoxb-9
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2.5).

HXA1_HUMAN
NC score	0.059157 (rank : 154)	θ value	θ > 10 (rank : 152)
Query Neighborhood Hits	101	Target Neighborhood Hits	334	Shared Neighborhood Hits	68
SwissProt Accessions	P49639, O43363	Gene names	HOXA1, HOX1F
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1F).

LHX4_HUMAN
NC score	0.059052 (rank : 155)	θ value	θ > 10 (rank : 189)
Query Neighborhood Hits	101	Target Neighborhood Hits	455	Shared Neighborhood Hits	80
SwissProt Accessions	Q969G2, Q8NHE0, Q8TCJ1, Q8WWX2, Q969W2	Gene names	LHX4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

LHX4_MOUSE
NC score	0.059004 (rank : 156)	θ value	θ > 10 (rank : 190)
Query Neighborhood Hits	101	Target Neighborhood Hits	457	Shared Neighborhood Hits	80
SwissProt Accessions	P53776, O08916, Q9R280	Gene names	Lhx4, Gsh-4, Gsh4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

HXB9_HUMAN
NC score	0.058825 (rank : 157)	θ value	5.27518 (rank : 88)
Query Neighborhood Hits	101	Target Neighborhood Hits	344	Shared Neighborhood Hits	63
SwissProt Accessions	P17482, Q9H1I1	Gene names	HOXB9, HOX2E
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5).

HXB7_MOUSE
NC score	0.058795 (rank : 158)	θ value	θ > 10 (rank : 163)
Query Neighborhood Hits	101	Target Neighborhood Hits	314	Shared Neighborhood Hits	62
SwissProt Accessions	P09024, Q3UW15	Gene names	Hoxb7, Hox-2.3, Hoxb-7
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2.3) (MUB1) (Homeobox protein MH-22B).

OTX2_MOUSE
NC score	0.058769 (rank : 159)	θ value	0.47712 (rank : 56)
Query Neighborhood Hits	101	Target Neighborhood Hits	345	Shared Neighborhood Hits	62
SwissProt Accessions	P80206	Gene names	Otx2, Otx-2
Domain Architecture
Description	Homeobox protein OTX2.

PRRX1_MOUSE
NC score	0.058454 (rank : 160)	θ value	θ > 10 (rank : 224)
Query Neighborhood Hits	101	Target Neighborhood Hits	346	Shared Neighborhood Hits	69
SwissProt Accessions	P63013, P43271, Q02810	Gene names	Prrx1, Pmx, Pmx1
Domain Architecture	No domain graphic available
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein mHox) (Homeobox protein K-2).

HME1_HUMAN
NC score	0.058385 (rank : 161)	θ value	θ > 10 (rank : 145)
Query Neighborhood Hits	101	Target Neighborhood Hits	384	Shared Neighborhood Hits	71
SwissProt Accessions	Q05925	Gene names	EN1
Domain Architecture
Description	Homeobox protein engrailed-1 (Hu-En-1).

PRRX2_MOUSE
NC score	0.058381 (rank : 162)	θ value	θ > 10 (rank : 225)
Query Neighborhood Hits	101	Target Neighborhood Hits	351	Shared Neighborhood Hits	70
SwissProt Accessions	Q06348, Q61651	Gene names	Prrx2, Prx2, S8
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Homeobox protein S8).

PRRX2_HUMAN
NC score	0.058157 (rank : 163)	θ value	8.99809 (rank : 101)
Query Neighborhood Hits	101	Target Neighborhood Hits	348	Shared Neighborhood Hits	69
SwissProt Accessions	Q99811, Q9UIB3	Gene names	PRRX2, PMX2, PRX2
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Paired-related homeobox protein 2).

HME1_MOUSE
NC score	0.058085 (rank : 164)	θ value	θ > 10 (rank : 146)
Query Neighborhood Hits	101	Target Neighborhood Hits	397	Shared Neighborhood Hits	71
SwissProt Accessions	P09065	Gene names	En1, En-1
Domain Architecture
Description	Homeobox protein engrailed-1 (Mo-En-1).

PO6F1_MOUSE
NC score	0.058023 (rank : 165)	θ value	θ > 10 (rank : 218)
Query Neighborhood Hits	101	Target Neighborhood Hits	581	Shared Neighborhood Hits	70
SwissProt Accessions	Q07916, Q91XK3	Gene names	Pou6f1, Emb
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (Octamer-binding transcription factor EMB) (Transcription regulatory protein MCP-1).

LHX3_HUMAN
NC score	0.057901 (rank : 166)	θ value	θ > 10 (rank : 187)
Query Neighborhood Hits	101	Target Neighborhood Hits	474	Shared Neighborhood Hits	84
SwissProt Accessions	Q9UBR4, Q9NZB5, Q9P0I8, Q9P0I9	Gene names	LHX3
Domain Architecture
Description	LIM/homeobox protein Lhx3.

OTX2_HUMAN
NC score	0.057615 (rank : 167)	θ value	0.62314 (rank : 58)
Query Neighborhood Hits	101	Target Neighborhood Hits	341	Shared Neighborhood Hits	59
SwissProt Accessions	P32243, Q6GTV3, Q9HAW3, Q9P2R1	Gene names	OTX2
Domain Architecture
Description	Homeobox protein OTX2.

HXD11_HUMAN
NC score	0.057141 (rank : 168)	θ value	θ > 10 (rank : 171)
Query Neighborhood Hits	101	Target Neighborhood Hits	353	Shared Neighborhood Hits	72
SwissProt Accessions	P31277, Q9NS02	Gene names	HOXD11, HOX4F
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4F).

LMX1A_MOUSE
NC score	0.056984 (rank : 169)	θ value	θ > 10 (rank : 194)
Query Neighborhood Hits	101	Target Neighborhood Hits	405	Shared Neighborhood Hits	63
SwissProt Accessions	Q9JKU8	Gene names	Lmx1a
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

HXA10_HUMAN
NC score	0.056960 (rank : 170)	θ value	θ > 10 (rank : 150)
Query Neighborhood Hits	101	Target Neighborhood Hits	334	Shared Neighborhood Hits	68
SwissProt Accessions	P31260, O43370, O43605, Q15949	Gene names	HOXA10, HOX1H
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL).

PHX2A_HUMAN
NC score	0.056837 (rank : 171)	θ value	θ > 10 (rank : 210)
Query Neighborhood Hits	101	Target Neighborhood Hits	345	Shared Neighborhood Hits	66
SwissProt Accessions	O14813, Q8IVZ2	Gene names	PHOX2A, ARIX, PMX2A
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (Aristaless homeobox protein homolog) (ARIX1 homeodomain protein).

CRX_HUMAN
NC score	0.056745 (rank : 172)	θ value	θ > 10 (rank : 116)
Query Neighborhood Hits	101	Target Neighborhood Hits	360	Shared Neighborhood Hits	66
SwissProt Accessions	O43186	Gene names	CRX, CORD2
Domain Architecture
Description	Cone-rod homeobox protein.

HXB7_HUMAN
NC score	0.056740 (rank : 173)	θ value	θ > 10 (rank : 162)
Query Neighborhood Hits	101	Target Neighborhood Hits	311	Shared Neighborhood Hits	62
SwissProt Accessions	P09629, Q15957	Gene names	HOXB7, HOX2C
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2C) (HHO.C1).

PHX2A_MOUSE
NC score	0.056679 (rank : 174)	θ value	θ > 10 (rank : 211)
Query Neighborhood Hits	101	Target Neighborhood Hits	338	Shared Neighborhood Hits	66
SwissProt Accessions	Q62066	Gene names	Phox2a, Arix, Phox2, Pmx2, Pmx2a
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (PHOX2A homeodomain protein) (Aristaless homeobox protein homolog).

PHX2B_HUMAN
NC score	0.056664 (rank : 175)	θ value	θ > 10 (rank : 212)
Query Neighborhood Hits	101	Target Neighborhood Hits	407	Shared Neighborhood Hits	67
SwissProt Accessions	Q99453, Q6PJD9	Gene names	PHOX2B, PMX2B
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

PHX2B_MOUSE
NC score	0.056664 (rank : 176)	θ value	θ > 10 (rank : 213)
Query Neighborhood Hits	101	Target Neighborhood Hits	407	Shared Neighborhood Hits	67
SwissProt Accessions	O35690	Gene names	Phox2b, Pmx2b
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

DLX2_MOUSE
NC score	0.056607 (rank : 177)	θ value	θ > 10 (rank : 122)
Query Neighborhood Hits	101	Target Neighborhood Hits	352	Shared Neighborhood Hits	76
SwissProt Accessions	P40764	Gene names	Dlx2, Tes-1, Tes1
Domain Architecture
Description	Homeobox protein DLX-2 (Homeobox protein TES-1).

HXC13_HUMAN
NC score	0.056569 (rank : 178)	θ value	θ > 10 (rank : 167)
Query Neighborhood Hits	101	Target Neighborhood Hits	336	Shared Neighborhood Hits	74
SwissProt Accessions	P31276, Q96J32, Q9NR24, Q9NYD5	Gene names	HOXC13, HOX3G
Domain Architecture
Description	Homeobox protein Hox-C13 (Hox-3G).

HXC13_MOUSE
NC score	0.056564 (rank : 179)	θ value	θ > 10 (rank : 168)
Query Neighborhood Hits	101	Target Neighborhood Hits	337	Shared Neighborhood Hits	74
SwissProt Accessions	P50207, Q53Z78, Q920I7	Gene names	Hoxc13, Hoxc-13
Domain Architecture
Description	Homeobox protein Hox-C13.

DLX2_HUMAN
NC score	0.056454 (rank : 180)	θ value	θ > 10 (rank : 121)
Query Neighborhood Hits	101	Target Neighborhood Hits	355	Shared Neighborhood Hits	76
SwissProt Accessions	Q07687	Gene names	DLX2
Domain Architecture
Description	Homeobox protein DLX-2.

HXD11_MOUSE
NC score	0.056125 (rank : 181)	θ value	θ > 10 (rank : 172)
Query Neighborhood Hits	101	Target Neighborhood Hits	376	Shared Neighborhood Hits	72
SwissProt Accessions	P23813	Gene names	Hoxd11, Hox-4.6, Hoxd-11
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5).

HXA10_MOUSE
NC score	0.055943 (rank : 182)	θ value	θ > 10 (rank : 151)
Query Neighborhood Hits	101	Target Neighborhood Hits	365	Shared Neighborhood Hits	68
SwissProt Accessions	P31310, Q80Y22	Gene names	Hoxa10, Hox-1.8, Hoxa-10
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1.8).

HXA6_HUMAN
NC score	0.055851 (rank : 183)	θ value	θ > 10 (rank : 154)
Query Neighborhood Hits	101	Target Neighborhood Hits	309	Shared Neighborhood Hits	64
SwissProt Accessions	P31267, Q9UPM0	Gene names	HOXA6, HOX1B
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A6 (Hox-1B).

GSCL_HUMAN
NC score	0.055719 (rank : 184)	θ value	θ > 10 (rank : 132)
Query Neighborhood Hits	101	Target Neighborhood Hits	343	Shared Neighborhood Hits	64
SwissProt Accessions	O15499	Gene names	GSCL
Domain Architecture
Description	Homeobox protein goosecoid-like (GSC-2).

PAX4_HUMAN
NC score	0.055429 (rank : 185)	θ value	θ > 10 (rank : 205)
Query Neighborhood Hits	101	Target Neighborhood Hits	367	Shared Neighborhood Hits	76
SwissProt Accessions	O43316, O95161, Q6B0H0	Gene names	PAX4
Domain Architecture
Description	Paired box protein Pax-4.

NKX25_HUMAN
NC score	0.055291 (rank : 186)	θ value	θ > 10 (rank : 197)
Query Neighborhood Hits	101	Target Neighborhood Hits	338	Shared Neighborhood Hits	75
SwissProt Accessions	P52952	Gene names	NKX2-5, CSX, NKX2.5, NKX2E
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

DBX1_MOUSE
NC score	0.055085 (rank : 187)	θ value	θ > 10 (rank : 118)
Query Neighborhood Hits	101	Target Neighborhood Hits	346	Shared Neighborhood Hits	66
SwissProt Accessions	P52950	Gene names	Dbx1, Dbx
Domain Architecture
Description	Homeobox protein DBX1.

HXB1_MOUSE
NC score	0.055044 (rank : 188)	θ value	θ > 10 (rank : 159)
Query Neighborhood Hits	101	Target Neighborhood Hits	341	Shared Neighborhood Hits	70
SwissProt Accessions	P17919, Q3ZAY6, Q9CYH3	Gene names	Hoxb1, Hox-2.9, Hoxb-1
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2.9).

GSCL_MOUSE
NC score	0.055001 (rank : 189)	θ value	θ > 10 (rank : 133)
Query Neighborhood Hits	101	Target Neighborhood Hits	339	Shared Neighborhood Hits	64
SwissProt Accessions	P56916	Gene names	Gscl
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid-like (GSC-2).

ISL1_HUMAN
NC score	0.054984 (rank : 190)	θ value	θ > 10 (rank : 179)
Query Neighborhood Hits	101	Target Neighborhood Hits	421	Shared Neighborhood Hits	62
SwissProt Accessions	P61371, P20663, P47894	Gene names	ISL1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

ISL1_MOUSE
NC score	0.054984 (rank : 191)	θ value	θ > 10 (rank : 180)
Query Neighborhood Hits	101	Target Neighborhood Hits	421	Shared Neighborhood Hits	62
SwissProt Accessions	P61372, P20663, P47894, Q812D8	Gene names	Isl1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

HXB1_HUMAN
NC score	0.054812 (rank : 192)	θ value	θ > 10 (rank : 158)
Query Neighborhood Hits	101	Target Neighborhood Hits	356	Shared Neighborhood Hits	70
SwissProt Accessions	P14653	Gene names	HOXB1, HOX2I
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2I).

CART1_HUMAN
NC score	0.054801 (rank : 193)	θ value	θ > 10 (rank : 111)
Query Neighborhood Hits	101	Target Neighborhood Hits	348	Shared Neighborhood Hits	75
SwissProt Accessions	Q15699, Q546C8, Q96FH4	Gene names	CART1
Domain Architecture
Description	Cartilage homeoprotein 1 (CART-1).

HXC11_HUMAN
NC score	0.054727 (rank : 194)	θ value	θ > 10 (rank : 166)
Query Neighborhood Hits	101	Target Neighborhood Hits	349	Shared Neighborhood Hits	67
SwissProt Accessions	O43248, Q96DH2	Gene names	HOXC11
Domain Architecture
Description	Homeobox protein Hox-C11.

HMBX1_HUMAN
NC score	0.054467 (rank : 195)	θ value	θ > 10 (rank : 144)
Query Neighborhood Hits	101	Target Neighborhood Hits	118	Shared Neighborhood Hits	27
SwissProt Accessions	Q6NT76, Q3Y6P1, Q96GS5, Q9H701	Gene names	HMBOX1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

TITF1_HUMAN
NC score	0.054095 (rank : 196)	θ value	θ > 10 (rank : 228)
Query Neighborhood Hits	101	Target Neighborhood Hits	332	Shared Neighborhood Hits	67
SwissProt Accessions	P43699, O14954, O14955, Q9BRJ8	Gene names	TITF1, NKX2-1, NKX2A, TTF1
Domain Architecture
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1) (Homeobox protein NK-2 homolog A).

HXA6_MOUSE
NC score	0.053973 (rank : 197)	θ value	θ > 10 (rank : 155)
Query Neighborhood Hits	101	Target Neighborhood Hits	304	Shared Neighborhood Hits	62
SwissProt Accessions	P09092, Q9JI98	Gene names	Hoxa6, Hox-1.2, Hoxa-6
Domain Architecture
Description	Homeobox protein Hox-A6 (Hox-1.2) (M5-4).

NKX12_MOUSE
NC score	0.053947 (rank : 198)	θ value	θ > 10 (rank : 196)
Query Neighborhood Hits	101	Target Neighborhood Hits	332	Shared Neighborhood Hits	62
SwissProt Accessions	P42580, Q9JHF2, Q9JKW5, Q9JKW6, Q9JKW9, Q9JKX0, Q9JKX1	Gene names	Nkx1-2, Nkx1.1, Sax1
Domain Architecture
Description	NK1 transcription factor-related protein 2 (Homeobox protein SAX-1) (NKX-1.1).

CDX4_MOUSE
NC score	0.053762 (rank : 199)	θ value	θ > 10 (rank : 115)
Query Neighborhood Hits	101	Target Neighborhood Hits	378	Shared Neighborhood Hits	69
SwissProt Accessions	Q07424	Gene names	Cdx4, Cdx-4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

HESX1_MOUSE
NC score	0.053714 (rank : 200)	θ value	θ > 10 (rank : 139)
Query Neighborhood Hits	101	Target Neighborhood Hits	331	Shared Neighborhood Hits	62
SwissProt Accessions	Q61658, Q61047	Gene names	Hesx1, Hes-1, Rpx
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (Anterior- restricted homeobox protein) (Rathke pouch homeo box).

CRX_MOUSE
NC score	0.053253 (rank : 201)	θ value	θ > 10 (rank : 117)
Query Neighborhood Hits	101	Target Neighborhood Hits	359	Shared Neighborhood Hits	62
SwissProt Accessions	O54751	Gene names	Crx
Domain Architecture
Description	Cone-rod homeobox protein.

HXD1_MOUSE
NC score	0.053182 (rank : 202)	θ value	θ > 10 (rank : 176)
Query Neighborhood Hits	101	Target Neighborhood Hits	381	Shared Neighborhood Hits	66
SwissProt Accessions	Q01822	Gene names	Hoxd1, Hox-4.9, Hoxd-1
Domain Architecture
Description	Homeobox protein Hox-D1 (Hox-4.9).

PAX4_MOUSE
NC score	0.053003 (rank : 203)	θ value	θ > 10 (rank : 206)
Query Neighborhood Hits	101	Target Neighborhood Hits	370	Shared Neighborhood Hits	74
SwissProt Accessions	P32115, P97341, Q9QUR1, Q9R091	Gene names	Pax4, Pax-4
Domain Architecture
Description	Paired box protein Pax-4.

CART1_MOUSE
NC score	0.052779 (rank : 204)	θ value	θ > 10 (rank : 112)
Query Neighborhood Hits	101	Target Neighborhood Hits	344	Shared Neighborhood Hits	72
SwissProt Accessions	Q8C8B0, Q8C370	Gene names	Cart1
Domain Architecture	No domain graphic available
Description	Cartilage homeoprotein 1 (CART-1).

LMX1A_HUMAN
NC score	0.052754 (rank : 205)	θ value	θ > 10 (rank : 193)
Query Neighborhood Hits	101	Target Neighborhood Hits	406	Shared Neighborhood Hits	65
SwissProt Accessions	Q8TE12, Q8TE11	Gene names	LMX1A
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

HXA7_HUMAN
NC score	0.052620 (rank : 206)	θ value	θ > 10 (rank : 156)
Query Neighborhood Hits	101	Target Neighborhood Hits	309	Shared Neighborhood Hits	61
SwissProt Accessions	P31268, O43368, O43486, O95655, Q9NSC8, Q9UDM1	Gene names	HOXA7, HOX1A
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1).

HHEX_HUMAN
NC score	0.052463 (rank : 207)	θ value	θ > 10 (rank : 140)
Query Neighborhood Hits	101	Target Neighborhood Hits	358	Shared Neighborhood Hits	63
SwissProt Accessions	Q03014	Gene names	HHEX, HEX, PRH, PRHX
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

HLXB9_HUMAN
NC score	0.052362 (rank : 208)	θ value	θ > 10 (rank : 142)
Query Neighborhood Hits	101	Target Neighborhood Hits	336	Shared Neighborhood Hits	69
SwissProt Accessions	P50219, Q9Y648	Gene names	HLXB9
Domain Architecture
Description	Homeobox protein HB9.

TITF1_MOUSE
NC score	0.052329 (rank : 209)	θ value	θ > 10 (rank : 229)
Query Neighborhood Hits	101	Target Neighborhood Hits	335	Shared Neighborhood Hits	67
SwissProt Accessions	P50220	Gene names	Titf1, Nkx-2.1, Nkx2-1, Ttf1
Domain Architecture	No domain graphic available
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1).

ARX_HUMAN
NC score	0.051456 (rank : 210)	θ value	θ > 10 (rank : 106)
Query Neighborhood Hits	101	Target Neighborhood Hits	401	Shared Neighborhood Hits	68
SwissProt Accessions	Q96QS3	Gene names	ARX
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

HXB6_HUMAN
NC score	0.051331 (rank : 211)	θ value	θ > 10 (rank : 160)
Query Neighborhood Hits	101	Target Neighborhood Hits	307	Shared Neighborhood Hits	62
SwissProt Accessions	P17509, P09068, Q9HB11, Q9UGH2	Gene names	HOXB6, HOX2B
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2).

HXB6_MOUSE
NC score	0.051324 (rank : 212)	θ value	θ > 10 (rank : 161)
Query Neighborhood Hits	101	Target Neighborhood Hits	309	Shared Neighborhood Hits	62
SwissProt Accessions	P09023	Gene names	Hoxb6, Hox-2.2, Hoxb-6
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2.2) (Homeobox protein MH-22A).

ARX_MOUSE
NC score	0.051251 (rank : 213)	θ value	θ > 10 (rank : 107)
Query Neighborhood Hits	101	Target Neighborhood Hits	398	Shared Neighborhood Hits	68
SwissProt Accessions	O35085, Q9QYT4	Gene names	Arx
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

GSH2_MOUSE
NC score	0.051165 (rank : 214)	θ value	θ > 10 (rank : 137)
Query Neighborhood Hits	101	Target Neighborhood Hits	319	Shared Neighborhood Hits	66
SwissProt Accessions	P31316	Gene names	Gsh2, Gsh-2
Domain Architecture
Description	Homeobox protein GSH-2.

LHX3_MOUSE
NC score	0.050783 (rank : 215)	θ value	θ > 10 (rank : 188)
Query Neighborhood Hits	101	Target Neighborhood Hits	451	Shared Neighborhood Hits	77
SwissProt Accessions	P50481, Q61800, Q61801	Gene names	Lhx3, Lim-3, Lim3, Plim
Domain Architecture
Description	LIM/homeobox protein Lhx3 (Homeobox protein LIM-3) (Homeobox protein P-LIM) (LIM homeobox protein 3).

GSH2_HUMAN
NC score	0.050740 (rank : 216)	θ value	θ > 10 (rank : 136)
Query Neighborhood Hits	101	Target Neighborhood Hits	324	Shared Neighborhood Hits	67
SwissProt Accessions	Q9BZM3	Gene names	GSH2
Domain Architecture
Description	Homeobox protein GSH-2.

HESX1_HUMAN
NC score	0.050734 (rank : 217)	θ value	θ > 10 (rank : 138)
Query Neighborhood Hits	101	Target Neighborhood Hits	326	Shared Neighborhood Hits	62
SwissProt Accessions	Q9UBX0, Q99667	Gene names	HESX1, HANF
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (hAnf).

TLX3_MOUSE
NC score	0.050671 (rank : 218)	θ value	θ > 10 (rank : 230)
Query Neighborhood Hits	101	Target Neighborhood Hits	346	Shared Neighborhood Hits	72
SwissProt Accessions	O55144	Gene names	Tlx3, Hox11l2, Rnx, Tlx1l2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox TLX-3) (Homeobox protein Hox-11L2) (Respiratory neuron homeobox protein).

CDX4_HUMAN
NC score	0.050572 (rank : 219)	θ value	θ > 10 (rank : 114)
Query Neighborhood Hits	101	Target Neighborhood Hits	366	Shared Neighborhood Hits	71
SwissProt Accessions	O14627, Q5JS20	Gene names	CDX4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

CDX1_MOUSE
NC score	0.050499 (rank : 220)	θ value	θ > 10 (rank : 113)
Query Neighborhood Hits	101	Target Neighborhood Hits	379	Shared Neighborhood Hits	59
SwissProt Accessions	P18111, Q8VCF7	Gene names	Cdx1, Cdx-1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

HXD1_HUMAN
NC score	0.050466 (rank : 221)	θ value	θ > 10 (rank : 175)
Query Neighborhood Hits	101	Target Neighborhood Hits	337	Shared Neighborhood Hits	68
SwissProt Accessions	Q9GZZ0	Gene names	HOXD1
Domain Architecture
Description	Homeobox protein Hox-D1.

HMX2_MOUSE
NC score	0.050413 (rank : 222)	θ value	θ > 10 (rank : 149)
Query Neighborhood Hits	101	Target Neighborhood Hits	354	Shared Neighborhood Hits	72
SwissProt Accessions	P43687, Q8R1Q2	Gene names	Hmx2, Nkx-5.2, Nkx5-2
Domain Architecture
Description	Homeobox protein HMX2 (Homeobox protein Nkx-5.2).

HHEX_MOUSE
NC score	0.050410 (rank : 223)	θ value	θ > 10 (rank : 141)
Query Neighborhood Hits	101	Target Neighborhood Hits	350	Shared Neighborhood Hits	66
SwissProt Accessions	P43120	Gene names	Hhex, Prhx
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

LMX1B_HUMAN
NC score	0.050338 (rank : 224)	θ value	θ > 10 (rank : 195)
Query Neighborhood Hits	101	Target Neighborhood Hits	404	Shared Neighborhood Hits	64
SwissProt Accessions	O60663, O75463	Gene names	LMX1B
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

HLXB9_MOUSE
NC score	0.050214 (rank : 225)	θ value	θ > 10 (rank : 143)
Query Neighborhood Hits	101	Target Neighborhood Hits	354	Shared Neighborhood Hits	73
SwissProt Accessions	Q9QZW9	Gene names	Hlxb9
Domain Architecture
Description	Homeobox protein HB9.

RX_MOUSE
NC score	0.050006 (rank : 226)	θ value	θ > 10 (rank : 226)
Query Neighborhood Hits	101	Target Neighborhood Hits	429	Shared Neighborhood Hits	70
SwissProt Accessions	O35602, O08748	Gene names	Rax, Rx
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

VGLL4_HUMAN
NC score	0.026650 (rank : 227)	θ value	3.0926 (rank : 83)
Query Neighborhood Hits	101	Target Neighborhood Hits	28	Shared Neighborhood Hits	4
SwissProt Accessions	Q14135, Q7L5V0, Q9BQ78	Gene names	VGLL4, KIAA0121
Domain Architecture	No domain graphic available
Description	Transcription cofactor vestigial-like protein 4 (Vgl-4).

PO2F1_HUMAN
NC score	0.025731 (rank : 228)	θ value	8.99809 (rank : 100)
Query Neighborhood Hits	101	Target Neighborhood Hits	426	Shared Neighborhood Hits	60
SwissProt Accessions	P14859, Q5TBT7, Q6PK46, Q8NEU9, Q9BPV1	Gene names	POU2F1, OCT1, OTF1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

SOX11_MOUSE
NC score	0.016864 (rank : 229)	θ value	0.47712 (rank : 57)
Query Neighborhood Hits	101	Target Neighborhood Hits	96	Shared Neighborhood Hits	4
SwissProt Accessions	Q7M6Y2, O35178, O89036, Q04889, Q80XF0	Gene names	Sox11, Sox-11
Domain Architecture	No domain graphic available
Description	Transcription factor SOX-11.

CBP_HUMAN
NC score	0.014799 (rank : 230)	θ value	3.0926 (rank : 74)
Query Neighborhood Hits	101	Target Neighborhood Hits	941	Shared Neighborhood Hits	14
SwissProt Accessions	Q92793, O00147, Q16376	Gene names	CREBBP, CBP
Domain Architecture
Description	CREB-binding protein (EC 2.3.1.48).

AATK_HUMAN
NC score	0.005179 (rank : 231)	θ value	0.21417 (rank : 51)
Query Neighborhood Hits	101	Target Neighborhood Hits	1243	Shared Neighborhood Hits	8
SwissProt Accessions	Q6ZMQ8, O75136, Q6ZN31, Q86X28	Gene names	AATK, KIAA0641
Domain Architecture	No domain graphic available
Description	Apoptosis-associated tyrosine-protein kinase (EC 2.7.10.2) (AATYK) (Brain apoptosis-associated tyrosine kinase) (CDK5-binding protein) (p35-binding protein) (p35BP).

MTMR3_HUMAN
NC score	0.004466 (rank : 232)	θ value	5.27518 (rank : 96)
Query Neighborhood Hits	101	Target Neighborhood Hits	163	Shared Neighborhood Hits	3
SwissProt Accessions	Q13615, Q9NYN5, Q9NYN6, Q9UDX6, Q9UEG3	Gene names	MTMR3, KIAA0371, ZFYVE10
Domain Architecture
Description	Myotubularin-related protein 3 (EC 3.1.3.48) (FYVE domain-containing dual specificity protein phosphatase 1) (FYVE-DSP1) (Zinc finger FYVE domain-containing protein 10).