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Network neighborhood for query Sequence : UCRP_MOUSE

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UCRP_MOUSE
SwissProt Accessions	Q64339, Q8K0H3	Gene names	Isg15, G1p2, Ucrp
Domain Architecture
Description	Ubiquitin cross-reactive protein precursor (Interferon-stimulated protein 15) (IP17).
Rank Plots	Jump to hits sorted by θ Jump to hits sorted by NC score

Hits sorted by θ

UCRP_MOUSE
θ value	3.69378e-78 (rank : 1)	NC score	0.999962 (rank : 1)
Query Neighborhood Hits	28	Target Neighborhood Hits	28	Shared Neighborhood Hits	28
SwissProt Accessions	Q64339, Q8K0H3	Gene names	Isg15, G1p2, Ucrp
Domain Architecture
Description	Ubiquitin cross-reactive protein precursor (Interferon-stimulated protein 15) (IP17).

UCRP_HUMAN
θ value	4.55743e-44 (rank : 2)	NC score	0.923901 (rank : 2)
Query Neighborhood Hits	28	Target Neighborhood Hits	26	Shared Neighborhood Hits	18
SwissProt Accessions	P05161, Q7Z2G2, Q96GF0	Gene names	ISG15, G1P2, UCRP
Domain Architecture
Description	Interferon-induced 17 kDa protein precursor [Contains: Ubiquitin cross-reactive protein (hUCRP) (Interferon-induced 15 kDa protein)].

UBIQ_HUMAN
θ value	1.87187e-05 (rank : 3)	NC score	0.512914 (rank : 3)
Query Neighborhood Hits	28	Target Neighborhood Hits	49	Shared Neighborhood Hits	25
SwissProt Accessions	P62988, P02248, P02249, P02250, Q29120, Q6LBL4, Q6LDU5, Q91887, Q91888, Q9BWD6, Q9BX98, Q9UEF2, Q9UEG1, Q9UEK8, Q9UPK7	Gene names	RPS27A, UBA80, UBCEP1
Domain Architecture	No domain graphic available
Description	Ubiquitin.

UBIQ_MOUSE
θ value	1.87187e-05 (rank : 4)	NC score	0.512914 (rank : 4)
Query Neighborhood Hits	28	Target Neighborhood Hits	49	Shared Neighborhood Hits	25
SwissProt Accessions	P62991, P02248, P02249, P02250, Q29120, Q62317, Q64223, Q8VCH1, Q91887, Q91888, Q9CXY4, Q9CZM0, Q9D1R5, Q9D8D9, Q9ET23, Q9ET24, Q9Z0H9	Gene names	Rps27a, Uba80, Ubcep1
Domain Architecture	No domain graphic available
Description	Ubiquitin.

UBL4A_HUMAN
θ value	9.29e-05 (rank : 5)	NC score	0.460530 (rank : 5)
Query Neighborhood Hits	28	Target Neighborhood Hits	38	Shared Neighborhood Hits	23
SwissProt Accessions	P11441	Gene names	UBL4A, DXS254E, GDX, UBL4
Domain Architecture
Description	Ubiquitin-like protein 4A (Ubiquitin-like protein GDX).

UBL4A_MOUSE
θ value	0.00175202 (rank : 6)	NC score	0.442587 (rank : 6)
Query Neighborhood Hits	28	Target Neighborhood Hits	38	Shared Neighborhood Hits	23
SwissProt Accessions	P21126	Gene names	Ubl4a, Gdx, Ubl4
Domain Architecture
Description	Ubiquitin-like protein 4A (Ubiquitin-like protein GDX).

UBD_HUMAN
θ value	0.00228821 (rank : 7)	NC score	0.385314 (rank : 9)
Query Neighborhood Hits	28	Target Neighborhood Hits	26	Shared Neighborhood Hits	21
SwissProt Accessions	O15205, Q5SUK2, Q96EC7	Gene names	UBD, FAT10
Domain Architecture	No domain graphic available
Description	Ubiquitin D (Ubiquitin-like protein FAT10) (Diubiquitin).

UBQL3_HUMAN
θ value	0.0113563 (rank : 8)	NC score	0.239320 (rank : 13)
Query Neighborhood Hits	28	Target Neighborhood Hits	141	Shared Neighborhood Hits	23
SwissProt Accessions	Q9H347, Q9NRE0	Gene names	UBQLN3
Domain Architecture
Description	Ubiquilin-3.

BAT3_HUMAN
θ value	0.0431538 (rank : 9)	NC score	0.214819 (rank : 15)
Query Neighborhood Hits	28	Target Neighborhood Hits	490	Shared Neighborhood Hits	22
SwissProt Accessions	P46379, O95874, Q5SQ35, Q5SQ36, Q5SQ37, Q5SRP8, Q96SA6, Q9BCN4	Gene names	BAT3, G3
Domain Architecture
Description	Large proline-rich protein BAT3 (HLA-B-associated transcript 3) (Protein G3).

BAT3_MOUSE
θ value	0.0431538 (rank : 10)	NC score	0.207802 (rank : 19)
Query Neighborhood Hits	28	Target Neighborhood Hits	518	Shared Neighborhood Hits	20
SwissProt Accessions	Q9Z1R2, Q8SNA3	Gene names	Bat3
Domain Architecture	No domain graphic available
Description	Large proline-rich protein BAT3 (HLA-B-associated transcript 3).

NEDD8_HUMAN
θ value	0.0563607 (rank : 11)	NC score	0.415969 (rank : 7)
Query Neighborhood Hits	28	Target Neighborhood Hits	40	Shared Neighborhood Hits	24
SwissProt Accessions	Q15843, Q6LES6	Gene names	NEDD8
Domain Architecture
Description	NEDD8 precursor (Ubiquitin-like protein Nedd8) (Neddylin).

NEDD8_MOUSE
θ value	0.0563607 (rank : 12)	NC score	0.415671 (rank : 8)
Query Neighborhood Hits	28	Target Neighborhood Hits	40	Shared Neighborhood Hits	24
SwissProt Accessions	P29595	Gene names	Nedd8, Nedd-8
Domain Architecture
Description	NEDD8 precursor (Ubiquitin-like protein Nedd8) (Neddylin) (Neural precursor cell expressed developmentally down-regulated protein 8).

UBQL3_MOUSE
θ value	0.0961366 (rank : 13)	NC score	0.218789 (rank : 14)
Query Neighborhood Hits	28	Target Neighborhood Hits	120	Shared Neighborhood Hits	21
SwissProt Accessions	Q8C5U9	Gene names	Ubqln3
Domain Architecture
Description	Ubiquilin-3.

OASL_HUMAN
θ value	0.163984 (rank : 14)	NC score	0.165717 (rank : 23)
Query Neighborhood Hits	28	Target Neighborhood Hits	26	Shared Neighborhood Hits	11
SwissProt Accessions	Q15646, O75686, Q9Y6K6, Q9Y6K7	Gene names	OASL, TRIP14
Domain Architecture
Description	59 kDa 2'-5'-oligoadenylate synthetase-like protein (p59 OASL) (p59OASL) (Thyroid receptor-interacting protein 14) (TRIP14).

UBP48_HUMAN
θ value	0.21417 (rank : 15)	NC score	0.073148 (rank : 33)
Query Neighborhood Hits	28	Target Neighborhood Hits	101	Shared Neighborhood Hits	4
SwissProt Accessions	Q86UV5, Q2M3I4, Q5SZI4, Q5T3T5, Q6NX53, Q8N3F6, Q96F64, Q96IQ3, Q9H5N3, Q9H5T7, Q9NUJ6, Q9NXR0	Gene names	USP48
Domain Architecture	No domain graphic available
Description	Ubiquitin carboxyl-terminal hydrolase 48 (EC 3.1.2.15) (Ubiquitin thioesterase 48) (Ubiquitin-specific-processing protease 48) (Deubiquitinating enzyme 48).

UBP48_MOUSE
θ value	0.21417 (rank : 16)	NC score	0.073435 (rank : 31)
Query Neighborhood Hits	28	Target Neighborhood Hits	124	Shared Neighborhood Hits	4
SwissProt Accessions	Q3V0C5, Q3TM39, Q571J9, Q8VDJ1	Gene names	Usp48, Kiaa4202
Domain Architecture	No domain graphic available
Description	Ubiquitin carboxyl-terminal hydrolase 48 (EC 3.1.2.15) (Ubiquitin thioesterase 48) (Ubiquitin-specific-processing protease 48) (Deubiquitinating enzyme 48).

UBQL1_HUMAN
θ value	0.279714 (rank : 17)	NC score	0.209965 (rank : 17)
Query Neighborhood Hits	28	Target Neighborhood Hits	72	Shared Neighborhood Hits	20
SwissProt Accessions	Q9UMX0, Q8IXS9, Q8N2Q3, Q9H0T8, Q9H3R4, Q9HAZ5	Gene names	UBQLN1, DA41, PLIC1
Domain Architecture
Description	Ubiquilin-1 (Protein linking IAP with cytoskeleton 1) (PLIC-1) (hPLIC- 1).

UBQL4_HUMAN
θ value	0.279714 (rank : 18)	NC score	0.209712 (rank : 18)
Query Neighborhood Hits	28	Target Neighborhood Hits	117	Shared Neighborhood Hits	20
SwissProt Accessions	Q9NRR5, Q9BR98, Q9UHX4	Gene names	UBQLN4, C1orf6, UBIN
Domain Architecture
Description	Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein A1U).

UBQL4_MOUSE
θ value	0.365318 (rank : 19)	NC score	0.213158 (rank : 16)
Query Neighborhood Hits	28	Target Neighborhood Hits	99	Shared Neighborhood Hits	20
SwissProt Accessions	Q99NB8, Q8BP88	Gene names	Ubqln4, Ubin
Domain Architecture
Description	Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein A1U).

UBQL1_MOUSE
θ value	0.47712 (rank : 20)	NC score	0.203206 (rank : 20)
Query Neighborhood Hits	28	Target Neighborhood Hits	86	Shared Neighborhood Hits	20
SwissProt Accessions	Q8R317, Q80V10, Q8C7T4, Q8C835, Q8K141, Q91VI8, Q9D0Z0, Q9QZM1	Gene names	Ubqln1, Plic1
Domain Architecture
Description	Ubiquilin-1 (Protein linking IAP with cytoskeleton 1) (PLIC-1).

UBIM_HUMAN
θ value	1.06291 (rank : 21)	NC score	0.324512 (rank : 10)
Query Neighborhood Hits	28	Target Neighborhood Hits	19	Shared Neighborhood Hits	16
SwissProt Accessions	P35544, Q9H5V4	Gene names	FAU
Domain Architecture
Description	Ubiquitin-like protein FUBI.

PRKN2_HUMAN
θ value	1.38821 (rank : 22)	NC score	0.137523 (rank : 25)
Query Neighborhood Hits	28	Target Neighborhood Hits	65	Shared Neighborhood Hits	18
SwissProt Accessions	O60260, Q5TFV8, Q6Q2I6, Q8NI41, Q8NI43, Q8NI44, Q8WW07	Gene names	PARK2, PRKN
Domain Architecture	No domain graphic available
Description	Parkin (EC 6.3.2.-) (Ubiquitin E3 ligase PRKN) (Parkinson juvenile disease protein 2) (Parkinson disease protein 2).

PRKN2_MOUSE
θ value	1.81305 (rank : 23)	NC score	0.145637 (rank : 24)
Query Neighborhood Hits	28	Target Neighborhood Hits	69	Shared Neighborhood Hits	19
SwissProt Accessions	Q9WVS6, Q9ES22, Q9ES23	Gene names	Park2, Prkn
Domain Architecture	No domain graphic available
Description	Parkin (EC 6.3.2.-) (Ubiquitin E3 ligase PRKN).

UHRF1_MOUSE
θ value	2.36792 (rank : 24)	NC score	0.068663 (rank : 35)
Query Neighborhood Hits	28	Target Neighborhood Hits	278	Shared Neighborhood Hits	12
SwissProt Accessions	Q8VDF2, Q8C6F1, Q8VIA1, Q9Z1H6	Gene names	Uhrf1, Np95
Domain Architecture	No domain graphic available
Description	Ubiquitin-like PHD and RING finger domain-containing protein 1 (EC 6.3.2.-) (Ubiquitin-like-containing PHD and RING finger domains protein 1) (Nuclear zinc finger protein Np95) (Nuclear protein 95).

UBIM_MOUSE
θ value	3.0926 (rank : 25)	NC score	0.306705 (rank : 11)
Query Neighborhood Hits	28	Target Neighborhood Hits	16	Shared Neighborhood Hits	14
SwissProt Accessions	P35545, Q9JJ24	Gene names	Fau
Domain Architecture
Description	Ubiquitin-like protein FUBI (Monoclonal nonspecific suppressor factor beta) (MNSF-beta).

UBQL2_MOUSE
θ value	3.0926 (rank : 26)	NC score	0.192425 (rank : 21)
Query Neighborhood Hits	28	Target Neighborhood Hits	114	Shared Neighborhood Hits	20
SwissProt Accessions	Q9QZM0, Q7TSJ8, Q8VDH9	Gene names	Ubqln2, Plic2
Domain Architecture
Description	Ubiquilin-2 (Protein linking IAP with cytoskeleton 2) (PLIC-2) (Ubiquitin-like product Chap1/Dsk2) (DSK2 homolog) (Chap1).

CT086_HUMAN
θ value	4.03905 (rank : 27)	NC score	0.018139 (rank : 44)
Query Neighborhood Hits	28	Target Neighborhood Hits	277	Shared Neighborhood Hits	4
SwissProt Accessions	Q9BZ19, Q4VXE6	Gene names	C20orf86
Domain Architecture
Description	Putative uncharacterized protein C20orf86.

UBD_MOUSE
θ value	4.03905 (rank : 28)	NC score	0.305010 (rank : 12)
Query Neighborhood Hits	28	Target Neighborhood Hits	30	Shared Neighborhood Hits	23
SwissProt Accessions	P63072, Q9WV10	Gene names	Ubd, Fat10
Domain Architecture	No domain graphic available
Description	Ubiquitin D (Ubiquitin-like protein FAT10) (Diubiquitin).

RD23A_HUMAN
θ value	θ > 10 (rank : 29)	NC score	0.086774 (rank : 28)
Query Neighborhood Hits	28	Target Neighborhood Hits	73	Shared Neighborhood Hits	15
SwissProt Accessions	P54725	Gene names	RAD23A
Domain Architecture
Description	UV excision repair protein RAD23 homolog A (hHR23A).

RD23A_MOUSE
θ value	θ > 10 (rank : 30)	NC score	0.080164 (rank : 29)
Query Neighborhood Hits	28	Target Neighborhood Hits	84	Shared Neighborhood Hits	15
SwissProt Accessions	P54726	Gene names	Rad23a, Mhr23a
Domain Architecture
Description	UV excision repair protein RAD23 homolog A (mHR23A).

RD23B_HUMAN
θ value	θ > 10 (rank : 31)	NC score	0.105151 (rank : 26)
Query Neighborhood Hits	28	Target Neighborhood Hits	115	Shared Neighborhood Hits	16
SwissProt Accessions	P54727, Q8WUB0	Gene names	RAD23B
Domain Architecture
Description	UV excision repair protein RAD23 homolog B (hHR23B) (XP-C repair- complementing complex 58 kDa protein) (p58).

RD23B_MOUSE
θ value	θ > 10 (rank : 32)	NC score	0.099286 (rank : 27)
Query Neighborhood Hits	28	Target Neighborhood Hits	189	Shared Neighborhood Hits	16
SwissProt Accessions	P54728	Gene names	Rad23b, Mhr23b
Domain Architecture
Description	UV excision repair protein RAD23 homolog B (mHR23B) (XP-C repair- complementing complex 58 kDa protein) (p58).

SF3A1_HUMAN
θ value	θ > 10 (rank : 33)	NC score	0.058690 (rank : 38)
Query Neighborhood Hits	28	Target Neighborhood Hits	199	Shared Neighborhood Hits	12
SwissProt Accessions	Q15459	Gene names	SF3A1, SAP114
Domain Architecture
Description	Splicing factor 3 subunit 1 (Spliceosome-associated protein 114) (SAP 114) (SF3a120).

SF3A1_MOUSE
θ value	θ > 10 (rank : 34)	NC score	0.057211 (rank : 40)
Query Neighborhood Hits	28	Target Neighborhood Hits	198	Shared Neighborhood Hits	12
SwissProt Accessions	Q8K4Z5, Q8C0M7, Q8C128, Q8C175, Q921T3	Gene names	Sf3a1
Domain Architecture	No domain graphic available
Description	Splicing factor 3 subunit 1 (SF3a120).

UBL7_HUMAN
θ value	θ > 10 (rank : 35)	NC score	0.072248 (rank : 34)
Query Neighborhood Hits	28	Target Neighborhood Hits	41	Shared Neighborhood Hits	12
SwissProt Accessions	Q96S82, Q96I03	Gene names	UBL7, BMSCUBP
Domain Architecture
Description	Ubiquitin-like protein 7 (Ubiquitin-like protein SB132) (Bone marrow stromal cell ubiquitin-like protein) (BMSC-UbP).

UBL7_MOUSE
θ value	θ > 10 (rank : 36)	NC score	0.075664 (rank : 30)
Query Neighborhood Hits	28	Target Neighborhood Hits	44	Shared Neighborhood Hits	13
SwissProt Accessions	Q91W67, Q9D7P5	Gene names	Ubl7
Domain Architecture
Description	Ubiquitin-like protein 7.

UBQL2_HUMAN
θ value	θ > 10 (rank : 37)	NC score	0.181534 (rank : 22)
Query Neighborhood Hits	28	Target Neighborhood Hits	103	Shared Neighborhood Hits	19
SwissProt Accessions	Q9UHD9, O94798, Q9H3W6, Q9HAZ4	Gene names	UBQLN2, PLIC2
Domain Architecture
Description	Ubiquilin-2 (Protein linking IAP with cytoskeleton 2) (PLIC-2) (hPLIC- 2) (Ubiquitin-like product Chap1/Dsk2) (DSK2 homolog) (Chap1).

UBTD1_HUMAN
θ value	θ > 10 (rank : 38)	NC score	0.058291 (rank : 39)
Query Neighborhood Hits	28	Target Neighborhood Hits	16	Shared Neighborhood Hits	6
SwissProt Accessions	Q9HAC8, Q53HI3	Gene names	UBTD1
Domain Architecture	No domain graphic available
Description	Ubiquitin domain-containing protein 1.

UBTD1_MOUSE
θ value	θ > 10 (rank : 39)	NC score	0.060236 (rank : 37)
Query Neighborhood Hits	28	Target Neighborhood Hits	15	Shared Neighborhood Hits	6
SwissProt Accessions	Q91WB7	Gene names	Ubtd1
Domain Architecture	No domain graphic available
Description	Ubiquitin domain-containing protein 1.

UBTD2_HUMAN
θ value	θ > 10 (rank : 40)	NC score	0.065919 (rank : 36)
Query Neighborhood Hits	28	Target Neighborhood Hits	12	Shared Neighborhood Hits	5
SwissProt Accessions	Q8WUN7, Q8TDQ3	Gene names	UBTD2, DCUBP
Domain Architecture	No domain graphic available
Description	Ubiquitin domain-containing protein 2 (Dendritic cell-derived ubiquitin-like protein) (DC-UbP) (Ubiquitin-like protein SB72).

UBTD2_MOUSE
θ value	θ > 10 (rank : 41)	NC score	0.073243 (rank : 32)
Query Neighborhood Hits	28	Target Neighborhood Hits	14	Shared Neighborhood Hits	6
SwissProt Accessions	Q6PGH0, Q8C5Y1	Gene names	Ubtd2
Domain Architecture	No domain graphic available
Description	Ubiquitin domain-containing protein 2.

UHRF1_HUMAN
θ value	θ > 10 (rank : 42)	NC score	0.053162 (rank : 43)
Query Neighborhood Hits	28	Target Neighborhood Hits	272	Shared Neighborhood Hits	8
SwissProt Accessions	Q96T88, Q8J022, Q9H6S6, Q9P115, Q9P1U7	Gene names	UHRF1, ICBP90, NP95, RNF106
Domain Architecture	No domain graphic available
Description	Ubiquitin-like PHD and RING finger domain-containing protein 1 (EC 6.3.2.-) (Ubiquitin-like-containing PHD and RING finger domains protein 1) (Inverted CCAAT box-binding protein of 90 kDa) (Transcription factor ICBP90) (Nuclear zinc finger protein Np95) (Nuclear protein 95) (HuNp95) (RING finger protein 106).

UHRF2_HUMAN
θ value	θ > 10 (rank : 43)	NC score	0.054157 (rank : 41)
Query Neighborhood Hits	28	Target Neighborhood Hits	269	Shared Neighborhood Hits	11
SwissProt Accessions	Q96PU4, Q5VYR1, Q5VYR3, Q659C8, Q8TAG7	Gene names	UHRF2, NIRF, RNF107
Domain Architecture	No domain graphic available
Description	Ubiquitin-like PHD and RING finger domain-containing protein 2 (EC 6.3.2.-) (Ubiquitin-like-containing PHD and RING finger domains protein 2) (Np95/ICBP90-like RING finger protein) (Np95-like RING finger protein) (Nuclear zinc finger protein Np97) (RING finger protein 107).

UHRF2_MOUSE
θ value	θ > 10 (rank : 44)	NC score	0.053986 (rank : 42)
Query Neighborhood Hits	28	Target Neighborhood Hits	275	Shared Neighborhood Hits	11
SwissProt Accessions	Q7TMI3, Q8BG56, Q8BJP6, Q8BY30, Q8K1I5	Gene names	Uhrf2, Nirf
Domain Architecture	No domain graphic available
Description	Ubiquitin-like PHD and RING finger domain-containing protein 2 (EC 6.3.2.-) (Ubiquitin-like-containing PHD and RING finger domains protein 2) (Np95-like ring finger protein) (Nuclear zinc finger protein Np97) (NIRF).

Hits sorted by NC score

UCRP_MOUSE
NC score	0.999962 (rank : 1)	θ value	3.69378e-78 (rank : 1)
Query Neighborhood Hits	28	Target Neighborhood Hits	28	Shared Neighborhood Hits	28
SwissProt Accessions	Q64339, Q8K0H3	Gene names	Isg15, G1p2, Ucrp
Domain Architecture
Description	Ubiquitin cross-reactive protein precursor (Interferon-stimulated protein 15) (IP17).

UCRP_HUMAN
NC score	0.923901 (rank : 2)	θ value	4.55743e-44 (rank : 2)
Query Neighborhood Hits	28	Target Neighborhood Hits	26	Shared Neighborhood Hits	18
SwissProt Accessions	P05161, Q7Z2G2, Q96GF0	Gene names	ISG15, G1P2, UCRP
Domain Architecture
Description	Interferon-induced 17 kDa protein precursor [Contains: Ubiquitin cross-reactive protein (hUCRP) (Interferon-induced 15 kDa protein)].

UBIQ_HUMAN
NC score	0.512914 (rank : 3)	θ value	1.87187e-05 (rank : 3)
Query Neighborhood Hits	28	Target Neighborhood Hits	49	Shared Neighborhood Hits	25
SwissProt Accessions	P62988, P02248, P02249, P02250, Q29120, Q6LBL4, Q6LDU5, Q91887, Q91888, Q9BWD6, Q9BX98, Q9UEF2, Q9UEG1, Q9UEK8, Q9UPK7	Gene names	RPS27A, UBA80, UBCEP1
Domain Architecture	No domain graphic available
Description	Ubiquitin.

UBIQ_MOUSE
NC score	0.512914 (rank : 4)	θ value	1.87187e-05 (rank : 4)
Query Neighborhood Hits	28	Target Neighborhood Hits	49	Shared Neighborhood Hits	25
SwissProt Accessions	P62991, P02248, P02249, P02250, Q29120, Q62317, Q64223, Q8VCH1, Q91887, Q91888, Q9CXY4, Q9CZM0, Q9D1R5, Q9D8D9, Q9ET23, Q9ET24, Q9Z0H9	Gene names	Rps27a, Uba80, Ubcep1
Domain Architecture	No domain graphic available
Description	Ubiquitin.

UBL4A_HUMAN
NC score	0.460530 (rank : 5)	θ value	9.29e-05 (rank : 5)
Query Neighborhood Hits	28	Target Neighborhood Hits	38	Shared Neighborhood Hits	23
SwissProt Accessions	P11441	Gene names	UBL4A, DXS254E, GDX, UBL4
Domain Architecture
Description	Ubiquitin-like protein 4A (Ubiquitin-like protein GDX).

UBL4A_MOUSE
NC score	0.442587 (rank : 6)	θ value	0.00175202 (rank : 6)
Query Neighborhood Hits	28	Target Neighborhood Hits	38	Shared Neighborhood Hits	23
SwissProt Accessions	P21126	Gene names	Ubl4a, Gdx, Ubl4
Domain Architecture
Description	Ubiquitin-like protein 4A (Ubiquitin-like protein GDX).

NEDD8_HUMAN
NC score	0.415969 (rank : 7)	θ value	0.0563607 (rank : 11)
Query Neighborhood Hits	28	Target Neighborhood Hits	40	Shared Neighborhood Hits	24
SwissProt Accessions	Q15843, Q6LES6	Gene names	NEDD8
Domain Architecture
Description	NEDD8 precursor (Ubiquitin-like protein Nedd8) (Neddylin).

NEDD8_MOUSE
NC score	0.415671 (rank : 8)	θ value	0.0563607 (rank : 12)
Query Neighborhood Hits	28	Target Neighborhood Hits	40	Shared Neighborhood Hits	24
SwissProt Accessions	P29595	Gene names	Nedd8, Nedd-8
Domain Architecture
Description	NEDD8 precursor (Ubiquitin-like protein Nedd8) (Neddylin) (Neural precursor cell expressed developmentally down-regulated protein 8).

UBD_HUMAN
NC score	0.385314 (rank : 9)	θ value	0.00228821 (rank : 7)
Query Neighborhood Hits	28	Target Neighborhood Hits	26	Shared Neighborhood Hits	21
SwissProt Accessions	O15205, Q5SUK2, Q96EC7	Gene names	UBD, FAT10
Domain Architecture	No domain graphic available
Description	Ubiquitin D (Ubiquitin-like protein FAT10) (Diubiquitin).

UBIM_HUMAN
NC score	0.324512 (rank : 10)	θ value	1.06291 (rank : 21)
Query Neighborhood Hits	28	Target Neighborhood Hits	19	Shared Neighborhood Hits	16
SwissProt Accessions	P35544, Q9H5V4	Gene names	FAU
Domain Architecture
Description	Ubiquitin-like protein FUBI.

UBIM_MOUSE
NC score	0.306705 (rank : 11)	θ value	3.0926 (rank : 25)
Query Neighborhood Hits	28	Target Neighborhood Hits	16	Shared Neighborhood Hits	14
SwissProt Accessions	P35545, Q9JJ24	Gene names	Fau
Domain Architecture
Description	Ubiquitin-like protein FUBI (Monoclonal nonspecific suppressor factor beta) (MNSF-beta).

UBD_MOUSE
NC score	0.305010 (rank : 12)	θ value	4.03905 (rank : 28)
Query Neighborhood Hits	28	Target Neighborhood Hits	30	Shared Neighborhood Hits	23
SwissProt Accessions	P63072, Q9WV10	Gene names	Ubd, Fat10
Domain Architecture	No domain graphic available
Description	Ubiquitin D (Ubiquitin-like protein FAT10) (Diubiquitin).

UBQL3_HUMAN
NC score	0.239320 (rank : 13)	θ value	0.0113563 (rank : 8)
Query Neighborhood Hits	28	Target Neighborhood Hits	141	Shared Neighborhood Hits	23
SwissProt Accessions	Q9H347, Q9NRE0	Gene names	UBQLN3
Domain Architecture
Description	Ubiquilin-3.

UBQL3_MOUSE
NC score	0.218789 (rank : 14)	θ value	0.0961366 (rank : 13)
Query Neighborhood Hits	28	Target Neighborhood Hits	120	Shared Neighborhood Hits	21
SwissProt Accessions	Q8C5U9	Gene names	Ubqln3
Domain Architecture
Description	Ubiquilin-3.

BAT3_HUMAN
NC score	0.214819 (rank : 15)	θ value	0.0431538 (rank : 9)
Query Neighborhood Hits	28	Target Neighborhood Hits	490	Shared Neighborhood Hits	22
SwissProt Accessions	P46379, O95874, Q5SQ35, Q5SQ36, Q5SQ37, Q5SRP8, Q96SA6, Q9BCN4	Gene names	BAT3, G3
Domain Architecture
Description	Large proline-rich protein BAT3 (HLA-B-associated transcript 3) (Protein G3).

UBQL4_MOUSE
NC score	0.213158 (rank : 16)	θ value	0.365318 (rank : 19)
Query Neighborhood Hits	28	Target Neighborhood Hits	99	Shared Neighborhood Hits	20
SwissProt Accessions	Q99NB8, Q8BP88	Gene names	Ubqln4, Ubin
Domain Architecture
Description	Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein A1U).

UBQL1_HUMAN
NC score	0.209965 (rank : 17)	θ value	0.279714 (rank : 17)
Query Neighborhood Hits	28	Target Neighborhood Hits	72	Shared Neighborhood Hits	20
SwissProt Accessions	Q9UMX0, Q8IXS9, Q8N2Q3, Q9H0T8, Q9H3R4, Q9HAZ5	Gene names	UBQLN1, DA41, PLIC1
Domain Architecture
Description	Ubiquilin-1 (Protein linking IAP with cytoskeleton 1) (PLIC-1) (hPLIC- 1).

UBQL4_HUMAN
NC score	0.209712 (rank : 18)	θ value	0.279714 (rank : 18)
Query Neighborhood Hits	28	Target Neighborhood Hits	117	Shared Neighborhood Hits	20
SwissProt Accessions	Q9NRR5, Q9BR98, Q9UHX4	Gene names	UBQLN4, C1orf6, UBIN
Domain Architecture
Description	Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein A1U).

BAT3_MOUSE
NC score	0.207802 (rank : 19)	θ value	0.0431538 (rank : 10)
Query Neighborhood Hits	28	Target Neighborhood Hits	518	Shared Neighborhood Hits	20
SwissProt Accessions	Q9Z1R2, Q8SNA3	Gene names	Bat3
Domain Architecture	No domain graphic available
Description	Large proline-rich protein BAT3 (HLA-B-associated transcript 3).

UBQL1_MOUSE
NC score	0.203206 (rank : 20)	θ value	0.47712 (rank : 20)
Query Neighborhood Hits	28	Target Neighborhood Hits	86	Shared Neighborhood Hits	20
SwissProt Accessions	Q8R317, Q80V10, Q8C7T4, Q8C835, Q8K141, Q91VI8, Q9D0Z0, Q9QZM1	Gene names	Ubqln1, Plic1
Domain Architecture
Description	Ubiquilin-1 (Protein linking IAP with cytoskeleton 1) (PLIC-1).

UBQL2_MOUSE
NC score	0.192425 (rank : 21)	θ value	3.0926 (rank : 26)
Query Neighborhood Hits	28	Target Neighborhood Hits	114	Shared Neighborhood Hits	20
SwissProt Accessions	Q9QZM0, Q7TSJ8, Q8VDH9	Gene names	Ubqln2, Plic2
Domain Architecture
Description	Ubiquilin-2 (Protein linking IAP with cytoskeleton 2) (PLIC-2) (Ubiquitin-like product Chap1/Dsk2) (DSK2 homolog) (Chap1).

UBQL2_HUMAN
NC score	0.181534 (rank : 22)	θ value	θ > 10 (rank : 37)
Query Neighborhood Hits	28	Target Neighborhood Hits	103	Shared Neighborhood Hits	19
SwissProt Accessions	Q9UHD9, O94798, Q9H3W6, Q9HAZ4	Gene names	UBQLN2, PLIC2
Domain Architecture
Description	Ubiquilin-2 (Protein linking IAP with cytoskeleton 2) (PLIC-2) (hPLIC- 2) (Ubiquitin-like product Chap1/Dsk2) (DSK2 homolog) (Chap1).

OASL_HUMAN
NC score	0.165717 (rank : 23)	θ value	0.163984 (rank : 14)
Query Neighborhood Hits	28	Target Neighborhood Hits	26	Shared Neighborhood Hits	11
SwissProt Accessions	Q15646, O75686, Q9Y6K6, Q9Y6K7	Gene names	OASL, TRIP14
Domain Architecture
Description	59 kDa 2'-5'-oligoadenylate synthetase-like protein (p59 OASL) (p59OASL) (Thyroid receptor-interacting protein 14) (TRIP14).

PRKN2_MOUSE
NC score	0.145637 (rank : 24)	θ value	1.81305 (rank : 23)
Query Neighborhood Hits	28	Target Neighborhood Hits	69	Shared Neighborhood Hits	19
SwissProt Accessions	Q9WVS6, Q9ES22, Q9ES23	Gene names	Park2, Prkn
Domain Architecture	No domain graphic available
Description	Parkin (EC 6.3.2.-) (Ubiquitin E3 ligase PRKN).

PRKN2_HUMAN
NC score	0.137523 (rank : 25)	θ value	1.38821 (rank : 22)
Query Neighborhood Hits	28	Target Neighborhood Hits	65	Shared Neighborhood Hits	18
SwissProt Accessions	O60260, Q5TFV8, Q6Q2I6, Q8NI41, Q8NI43, Q8NI44, Q8WW07	Gene names	PARK2, PRKN
Domain Architecture	No domain graphic available
Description	Parkin (EC 6.3.2.-) (Ubiquitin E3 ligase PRKN) (Parkinson juvenile disease protein 2) (Parkinson disease protein 2).

RD23B_HUMAN
NC score	0.105151 (rank : 26)	θ value	θ > 10 (rank : 31)
Query Neighborhood Hits	28	Target Neighborhood Hits	115	Shared Neighborhood Hits	16
SwissProt Accessions	P54727, Q8WUB0	Gene names	RAD23B
Domain Architecture
Description	UV excision repair protein RAD23 homolog B (hHR23B) (XP-C repair- complementing complex 58 kDa protein) (p58).

RD23B_MOUSE
NC score	0.099286 (rank : 27)	θ value	θ > 10 (rank : 32)
Query Neighborhood Hits	28	Target Neighborhood Hits	189	Shared Neighborhood Hits	16
SwissProt Accessions	P54728	Gene names	Rad23b, Mhr23b
Domain Architecture
Description	UV excision repair protein RAD23 homolog B (mHR23B) (XP-C repair- complementing complex 58 kDa protein) (p58).

RD23A_HUMAN
NC score	0.086774 (rank : 28)	θ value	θ > 10 (rank : 29)
Query Neighborhood Hits	28	Target Neighborhood Hits	73	Shared Neighborhood Hits	15
SwissProt Accessions	P54725	Gene names	RAD23A
Domain Architecture
Description	UV excision repair protein RAD23 homolog A (hHR23A).

RD23A_MOUSE
NC score	0.080164 (rank : 29)	θ value	θ > 10 (rank : 30)
Query Neighborhood Hits	28	Target Neighborhood Hits	84	Shared Neighborhood Hits	15
SwissProt Accessions	P54726	Gene names	Rad23a, Mhr23a
Domain Architecture
Description	UV excision repair protein RAD23 homolog A (mHR23A).

UBL7_MOUSE
NC score	0.075664 (rank : 30)	θ value	θ > 10 (rank : 36)
Query Neighborhood Hits	28	Target Neighborhood Hits	44	Shared Neighborhood Hits	13
SwissProt Accessions	Q91W67, Q9D7P5	Gene names	Ubl7
Domain Architecture
Description	Ubiquitin-like protein 7.

UBP48_MOUSE
NC score	0.073435 (rank : 31)	θ value	0.21417 (rank : 16)
Query Neighborhood Hits	28	Target Neighborhood Hits	124	Shared Neighborhood Hits	4
SwissProt Accessions	Q3V0C5, Q3TM39, Q571J9, Q8VDJ1	Gene names	Usp48, Kiaa4202
Domain Architecture	No domain graphic available
Description	Ubiquitin carboxyl-terminal hydrolase 48 (EC 3.1.2.15) (Ubiquitin thioesterase 48) (Ubiquitin-specific-processing protease 48) (Deubiquitinating enzyme 48).

UBTD2_MOUSE
NC score	0.073243 (rank : 32)	θ value	θ > 10 (rank : 41)
Query Neighborhood Hits	28	Target Neighborhood Hits	14	Shared Neighborhood Hits	6
SwissProt Accessions	Q6PGH0, Q8C5Y1	Gene names	Ubtd2
Domain Architecture	No domain graphic available
Description	Ubiquitin domain-containing protein 2.

UBP48_HUMAN
NC score	0.073148 (rank : 33)	θ value	0.21417 (rank : 15)
Query Neighborhood Hits	28	Target Neighborhood Hits	101	Shared Neighborhood Hits	4
SwissProt Accessions	Q86UV5, Q2M3I4, Q5SZI4, Q5T3T5, Q6NX53, Q8N3F6, Q96F64, Q96IQ3, Q9H5N3, Q9H5T7, Q9NUJ6, Q9NXR0	Gene names	USP48
Domain Architecture	No domain graphic available
Description	Ubiquitin carboxyl-terminal hydrolase 48 (EC 3.1.2.15) (Ubiquitin thioesterase 48) (Ubiquitin-specific-processing protease 48) (Deubiquitinating enzyme 48).

UBL7_HUMAN
NC score	0.072248 (rank : 34)	θ value	θ > 10 (rank : 35)
Query Neighborhood Hits	28	Target Neighborhood Hits	41	Shared Neighborhood Hits	12
SwissProt Accessions	Q96S82, Q96I03	Gene names	UBL7, BMSCUBP
Domain Architecture
Description	Ubiquitin-like protein 7 (Ubiquitin-like protein SB132) (Bone marrow stromal cell ubiquitin-like protein) (BMSC-UbP).

UHRF1_MOUSE
NC score	0.068663 (rank : 35)	θ value	2.36792 (rank : 24)
Query Neighborhood Hits	28	Target Neighborhood Hits	278	Shared Neighborhood Hits	12
SwissProt Accessions	Q8VDF2, Q8C6F1, Q8VIA1, Q9Z1H6	Gene names	Uhrf1, Np95
Domain Architecture	No domain graphic available
Description	Ubiquitin-like PHD and RING finger domain-containing protein 1 (EC 6.3.2.-) (Ubiquitin-like-containing PHD and RING finger domains protein 1) (Nuclear zinc finger protein Np95) (Nuclear protein 95).

UBTD2_HUMAN
NC score	0.065919 (rank : 36)	θ value	θ > 10 (rank : 40)
Query Neighborhood Hits	28	Target Neighborhood Hits	12	Shared Neighborhood Hits	5
SwissProt Accessions	Q8WUN7, Q8TDQ3	Gene names	UBTD2, DCUBP
Domain Architecture	No domain graphic available
Description	Ubiquitin domain-containing protein 2 (Dendritic cell-derived ubiquitin-like protein) (DC-UbP) (Ubiquitin-like protein SB72).

UBTD1_MOUSE
NC score	0.060236 (rank : 37)	θ value	θ > 10 (rank : 39)
Query Neighborhood Hits	28	Target Neighborhood Hits	15	Shared Neighborhood Hits	6
SwissProt Accessions	Q91WB7	Gene names	Ubtd1
Domain Architecture	No domain graphic available
Description	Ubiquitin domain-containing protein 1.

SF3A1_HUMAN
NC score	0.058690 (rank : 38)	θ value	θ > 10 (rank : 33)
Query Neighborhood Hits	28	Target Neighborhood Hits	199	Shared Neighborhood Hits	12
SwissProt Accessions	Q15459	Gene names	SF3A1, SAP114
Domain Architecture
Description	Splicing factor 3 subunit 1 (Spliceosome-associated protein 114) (SAP 114) (SF3a120).

UBTD1_HUMAN
NC score	0.058291 (rank : 39)	θ value	θ > 10 (rank : 38)
Query Neighborhood Hits	28	Target Neighborhood Hits	16	Shared Neighborhood Hits	6
SwissProt Accessions	Q9HAC8, Q53HI3	Gene names	UBTD1
Domain Architecture	No domain graphic available
Description	Ubiquitin domain-containing protein 1.

SF3A1_MOUSE
NC score	0.057211 (rank : 40)	θ value	θ > 10 (rank : 34)
Query Neighborhood Hits	28	Target Neighborhood Hits	198	Shared Neighborhood Hits	12
SwissProt Accessions	Q8K4Z5, Q8C0M7, Q8C128, Q8C175, Q921T3	Gene names	Sf3a1
Domain Architecture	No domain graphic available
Description	Splicing factor 3 subunit 1 (SF3a120).

UHRF2_HUMAN
NC score	0.054157 (rank : 41)	θ value	θ > 10 (rank : 43)
Query Neighborhood Hits	28	Target Neighborhood Hits	269	Shared Neighborhood Hits	11
SwissProt Accessions	Q96PU4, Q5VYR1, Q5VYR3, Q659C8, Q8TAG7	Gene names	UHRF2, NIRF, RNF107
Domain Architecture	No domain graphic available
Description	Ubiquitin-like PHD and RING finger domain-containing protein 2 (EC 6.3.2.-) (Ubiquitin-like-containing PHD and RING finger domains protein 2) (Np95/ICBP90-like RING finger protein) (Np95-like RING finger protein) (Nuclear zinc finger protein Np97) (RING finger protein 107).

UHRF2_MOUSE
NC score	0.053986 (rank : 42)	θ value	θ > 10 (rank : 44)
Query Neighborhood Hits	28	Target Neighborhood Hits	275	Shared Neighborhood Hits	11
SwissProt Accessions	Q7TMI3, Q8BG56, Q8BJP6, Q8BY30, Q8K1I5	Gene names	Uhrf2, Nirf
Domain Architecture	No domain graphic available
Description	Ubiquitin-like PHD and RING finger domain-containing protein 2 (EC 6.3.2.-) (Ubiquitin-like-containing PHD and RING finger domains protein 2) (Np95-like ring finger protein) (Nuclear zinc finger protein Np97) (NIRF).

UHRF1_HUMAN
NC score	0.053162 (rank : 43)	θ value	θ > 10 (rank : 42)
Query Neighborhood Hits	28	Target Neighborhood Hits	272	Shared Neighborhood Hits	8
SwissProt Accessions	Q96T88, Q8J022, Q9H6S6, Q9P115, Q9P1U7	Gene names	UHRF1, ICBP90, NP95, RNF106
Domain Architecture	No domain graphic available
Description	Ubiquitin-like PHD and RING finger domain-containing protein 1 (EC 6.3.2.-) (Ubiquitin-like-containing PHD and RING finger domains protein 1) (Inverted CCAAT box-binding protein of 90 kDa) (Transcription factor ICBP90) (Nuclear zinc finger protein Np95) (Nuclear protein 95) (HuNp95) (RING finger protein 106).

CT086_HUMAN
NC score	0.018139 (rank : 44)	θ value	4.03905 (rank : 27)
Query Neighborhood Hits	28	Target Neighborhood Hits	277	Shared Neighborhood Hits	4
SwissProt Accessions	Q9BZ19, Q4VXE6	Gene names	C20orf86
Domain Architecture
Description	Putative uncharacterized protein C20orf86.